BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146705.10 - phase: 0
(146 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sa... 236 7e-62
emb|CAB78427.1| glycine-rich RNA-binding protein AtGRP2-like [Ar... 187 6e-47
ref|NP_849377.1| glycine-rich RNA-binding protein (GRP2) [Arabid... 186 1e-46
emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana] 184 3e-46
gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana] gi|9759... 180 6e-45
gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum] 171 3e-42
dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidops... 169 2e-41
gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabi... 167 6e-41
emb|CAA49174.1| glycine-rich RNA-binding protein [Arabidopsis th... 164 5e-40
gb|AAP13423.1| At1g74230 [Arabidopsis thaliana] gi|15221187|ref|... 163 9e-40
pir||S46286 RNA-binding protein - wood tobacco gi|624925|dbj|BAA... 163 9e-40
gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum] 162 1e-39
pir||T15047 RNA binding protein 3 - wood tobacco gi|2366750|dbj|... 155 2e-37
ref|NP_914833.1| putative glycine-rich RNA-binding protein 2 [Or... 152 2e-36
pir||T16961 RNA-binding protein RGP-3 - wood tobacco (fragment) ... 141 3e-33
gb|AAT85299.1| glycine-rich RNA-binding protein, putative [Oryza... 135 3e-31
gb|AAA75104.1| single-stranded nucleic acid binding protein [Tri... 135 3e-31
gb|AAB07749.1| low temperature-responsive RNA-binding protein gi... 134 5e-31
emb|CAA05728.1| OsGRP1 [Oryza sativa (japonica cultivar-group)] ... 133 1e-30
gb|AAB66884.1| glycine-rich protein [Oryza sativa] 132 2e-30
>gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
gi|7439994|pir||T06796 glycine-rich RNA-binding protein
- garden pea
Length = 146
Score = 236 bits (603), Expect = 7e-62
Identities = 122/149 (81%), Positives = 131/149 (87%), Gaps = 6/149 (4%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNK+GNLLRQGATQS+ APVSSMLNYLRHMSSSKLFIGGLSY VDDQSL+DAF +YG
Sbjct: 1 MAFCNKLGNLLRQGATQSSHAPVSSMLNYLRHMSSSKLFIGGLSYGVDDQSLKDAFASYG 60
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALS-MDGQDLNGRNIRVSYANDRQAGGP 119
+VVEARVITDR+TGRSRGFGFVNFTS+ESATSALS MDGQDLNGRNIRVSYANDR +
Sbjct: 61 EVVEARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDLNGRNIRVSYANDRPSAPR 120
Query: 120 RPGGGYGG--GGGYSGGGGGYSGGGGGGW 146
GGGYGG G G+S GG GGGGGGW
Sbjct: 121 GGGGGYGGGYGDGFSNRGG---GGGGGGW 146
>emb|CAB78427.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|4455314|emb|CAB36849.1| glycine-rich RNA-binding
protein AtGRP2-like [Arabidopsis thaliana]
gi|21553749|gb|AAM62842.1| glycine-rich RNA-binding
protein AtGRP2-like [Arabidopsis thaliana]
gi|18252853|gb|AAL62353.1| glycine-rich RNA-binding
protein AtGRP2 - like [Arabidopsis thaliana]
gi|25084267|gb|AAN72208.1| glycine-rich RNA-binding
protein AtGRP2 - like [Arabidopsis thaliana]
gi|25090505|sp|Q9SVM8|GRP2_ARATH Glycine-rich
RNA-binding protein 2, mitochondrial precursor (AtGRP2)
gi|15236359|ref|NP_193121.1| glycine-rich RNA-binding
protein (GRP2) [Arabidopsis thaliana]
Length = 158
Score = 187 bits (474), Expect = 6e-47
Identities = 100/149 (67%), Positives = 117/149 (78%), Gaps = 7/149 (4%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNK+G LLRQ + + PV+SML LR MS+ KLFIGGLS+ DD SLRDAF +G
Sbjct: 1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFG 59
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALS-MDGQDLNGRNIRVSYANDRQAGGP 119
DVV+A+VI DRETGRSRGFGFVNF E +AT+A+S MDG++LNGR+IRV+ ANDR + P
Sbjct: 60 DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS-AP 118
Query: 120 RP---GGGY-GGGGGYSGGGGGYSGGGGG 144
R GGGY GGGGGY GGGGGY GGGGG
Sbjct: 119 RAYGGGGGYSGGGGGYGGGGGGYGGGGGG 147
>ref|NP_849377.1| glycine-rich RNA-binding protein (GRP2) [Arabidopsis thaliana]
Length = 153
Score = 186 bits (471), Expect = 1e-46
Identities = 100/152 (65%), Positives = 117/152 (76%), Gaps = 9/152 (5%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNK+G LLRQ + + PV+SML LR MS+ KLFIGGLS+ DD SLRDAF +G
Sbjct: 1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFG 59
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALS-MDGQDLNGRNIRVSYANDRQAGGP 119
DVV+A+VI DRETGRSRGFGFVNF E +AT+A+S MDG++LNGR+IRV+ ANDR + P
Sbjct: 60 DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS-AP 118
Query: 120 RP---GGGY---GGGGGYSGGGGGYSGGGGGG 145
R GGGY GGGGGY GGGGGY GGG GG
Sbjct: 119 RAYGGGGGYSYGGGGGGYGGGGGGYGGGGDGG 150
>emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana]
Length = 150
Score = 184 bits (468), Expect = 3e-46
Identities = 99/152 (65%), Positives = 117/152 (76%), Gaps = 8/152 (5%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNK+G LLRQ + + PV+SML LR MS+ KLFIGGLS+ DD SLRDAF +G
Sbjct: 1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFG 59
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALS-MDGQDLNGRNIRVSYANDRQAGGP 119
DVV+A+VI DRETGRSRGFGFVNF E +AT+A+S MDG++LNGR+IRV+ ANDR + P
Sbjct: 60 DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS-AP 118
Query: 120 RP---GGGY--GGGGGYSGGGGGYSGGGGGGW 146
R GGGY GGGGGY GGGG Y GG GGG+
Sbjct: 119 RAYGGGGGYSGGGGGGYGGGGGSYGGGDGGGY 150
>gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|9759450|dbj|BAB10366.1| unnamed protein product
[Arabidopsis thaliana] gi|15239505|ref|NP_200911.1|
RNA-binding protein, putative [Arabidopsis thaliana]
gi|16974556|gb|AAL31194.1| AT5g61030/maf19_30
[Arabidopsis thaliana]
Length = 309
Score = 180 bits (457), Expect = 6e-45
Identities = 90/149 (60%), Positives = 115/149 (76%), Gaps = 5/149 (3%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVS----SMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAF 56
MAF +K GN+L+Q + A VS S+ +R MSSSKLFIGG++Y++D+ SLR+AF
Sbjct: 1 MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60
Query: 57 TTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQ 115
T YG+VV+ RVI DRETGRSRGFGFV FTS E+A+SA+ ++DG+DL+GR ++V+YANDR
Sbjct: 61 TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120
Query: 116 AGGPRPGGGYGGGGGYSGGGGGYSGGGGG 144
+GG GGGYGGGGG GG GGY GG GG
Sbjct: 121 SGGGFGGGGYGGGGGGYGGSGGYGGGAGG 149
>gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 171 bits (433), Expect = 3e-42
Identities = 89/158 (56%), Positives = 115/158 (72%), Gaps = 12/158 (7%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVS----SMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAF 56
MAF NKIGN+L+ G ++T +S S+ +R MSSSKLF+GGLSY D+ SL++ F
Sbjct: 1 MAFLNKIGNILKHGVGKNTNLELSASNGSLFQTIRSMSSSKLFVGGLSYGTDESSLKETF 60
Query: 57 TTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQ 115
+ YG+V+EARVI DRETGRSRGFGF++F S E ATSA+ +MDGQDL+GR I+V+YA +++
Sbjct: 61 SQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQAMDGQDLHGRRIKVNYATEKR 120
Query: 116 A---GGPRPGGGYGGGGGYSGGGGGYS----GGGGGGW 146
GG GG YGG GG GGGGY+ GGGGGG+
Sbjct: 121 RDGFGGGYGGGNYGGEGGNFAGGGGYAASNYGGGGGGF 158
Score = 30.4 bits (67), Expect = 9.3
Identities = 23/71 (32%), Positives = 30/71 (41%), Gaps = 12/71 (16%)
Query: 78 GFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGG---GYSGG 134
G G F+S S+ S G + +Y N+ P GG YG +SG
Sbjct: 205 GGGGTEFSSGNSSAGGYSSYGGGSS------NYGNN---SSPVEGGNYGSSTPNINHSGQ 255
Query: 135 GGGYSGGGGGG 145
G +SGG GGG
Sbjct: 256 GSSFSGGYGGG 266
>dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana]
gi|20453303|gb|AAM19890.1| AT3g23830/F14O13_2
[Arabidopsis thaliana] gi|17979516|gb|AAL50093.1|
AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding
protein, putative [Arabidopsis thaliana]
gi|15229525|ref|NP_189025.1| glycine-rich RNA-binding
protein, putative [Arabidopsis thaliana]
Length = 136
Score = 169 bits (427), Expect = 2e-41
Identities = 84/138 (60%), Positives = 107/138 (76%), Gaps = 5/138 (3%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNK+ +LRQG +QS+ PV+SML LR+MSS KLF+GGLS+ DD SL+ AFT++G
Sbjct: 1 MAFCNKLSGILRQGVSQSSNGPVTSMLGSLRYMSS-KLFVGGLSWGTDDSSLKQAFTSFG 59
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQAGGP 119
+V EA VI DRETGRSRGFGFV+F+ E+SA +A+ MDG++LNGR IRV+ A +R +
Sbjct: 60 EVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSA-- 117
Query: 120 RPGGGYGGGGGYSGGGGG 137
P +GGGGGY GGGGG
Sbjct: 118 -PRSSFGGGGGYGGGGGG 134
>gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 167 bits (422), Expect = 6e-41
Identities = 83/138 (60%), Positives = 106/138 (76%), Gaps = 5/138 (3%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAFCNK+ +LRQG + S+ PV+SML LR+MSS KLF+GGLS+ DD SL+ AFT++G
Sbjct: 1 MAFCNKLSGILRQGVSHSSNGPVTSMLGSLRYMSS-KLFVGGLSWGTDDSSLKQAFTSFG 59
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQAGGP 119
+V EA VI DRETGRSRGFGFV+F+ E+SA +A+ MDG++LNGR IRV+ A +R +
Sbjct: 60 EVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSA-- 117
Query: 120 RPGGGYGGGGGYSGGGGG 137
P +GGGGGY GGGGG
Sbjct: 118 -PRSSFGGGGGYGGGGGG 134
>emb|CAA49174.1| glycine-rich RNA-binding protein [Arabidopsis thaliana]
Length = 139
Score = 164 bits (414), Expect = 5e-40
Identities = 89/128 (69%), Positives = 103/128 (79%), Gaps = 7/128 (5%)
Query: 22 PVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGF 81
PV+SML LR MS+ KLFIGGLS+ DD SLRDAF +GDVV+A+VI DRETGRSRGFGF
Sbjct: 3 PVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 61
Query: 82 VNFTSEESATSALS-MDGQDLNGRNIRVSYANDRQAGGPRP---GGGY-GGGGGYSGGGG 136
VNF E +AT+A+S MDG++LNGR+IRV+ ANDR + PR GGGY GGGGGY GGGG
Sbjct: 62 VNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS-APRAYGGGGGYSGGGGGYGGGGG 120
Query: 137 GYSGGGGG 144
GY GGGGG
Sbjct: 121 GYGGGGGG 128
>gb|AAP13423.1| At1g74230 [Arabidopsis thaliana] gi|15221187|ref|NP_177563.1|
glycine-rich RNA-binding protein [Arabidopsis thaliana]
gi|25083154|gb|AAN72048.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|12324900|gb|AAG52402.1|
putative RNA-binding protein; 37609-36098 [Arabidopsis
thaliana] gi|25294324|pir||F96770 protein RNA-binding
protein F1O17.10 [imported] - Arabidopsis thaliana
Length = 289
Score = 163 bits (412), Expect = 9e-40
Identities = 90/167 (53%), Positives = 116/167 (68%), Gaps = 23/167 (13%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYG 60
MAF +K+G L Q ++ T + SSML +R MSSSK+F+GG+SY+ D+ LR+AF+ YG
Sbjct: 1 MAFLSKVGRLFSQTSSHVTAS--SSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYG 58
Query: 61 DVVEARVITDRETGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAG-GP 119
+VV+A++I DRETGRSRGF FV FTS E A++A+ +DGQDL+GR IRV+YA +R +G G
Sbjct: 59 EVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATERGSGFGG 118
Query: 120 R----PGGGYG---GG-----GGYSGGGGGYSG--------GGGGGW 146
R PGGGYG GG GGY GG GGY G GGGGG+
Sbjct: 119 RGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGY 165
>pir||S46286 RNA-binding protein - wood tobacco gi|624925|dbj|BAA05170.1|
RNA-binding glycine rich protein (RGP-2) [Nicotiana
sylvestris]
Length = 259
Score = 163 bits (412), Expect = 9e-40
Identities = 84/148 (56%), Positives = 110/148 (73%), Gaps = 7/148 (4%)
Query: 1 MAFCNKIGNLLRQGATQSTQ----APVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAF 56
MAF NKIGN+L+Q ++ A +S+ +R MSSSKLF+GGLS+ D+ SL++AF
Sbjct: 1 MAFVNKIGNMLKQIVSRHANLELCASRTSLYQAIRSMSSSKLFVGGLSWGTDETSLKEAF 60
Query: 57 TTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQ 115
+ +G+V+EARVI DR+TGRSRGFGFV+FTS E A SAL ++DGQDL+GR IRV+YA ++
Sbjct: 61 SQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASALTALDGQDLHGRQIRVNYATEKL 120
Query: 116 AGGPRPGGGYGGGGGYSGGGGGYSGGGG 143
G GGGYG GGGY GG G ++G GG
Sbjct: 121 RGS--FGGGYGSGGGYGGGDGSFAGAGG 146
>gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 162 bits (411), Expect = 1e-39
Identities = 84/151 (55%), Positives = 111/151 (72%), Gaps = 10/151 (6%)
Query: 1 MAFCNKIGNLLRQGATQSTQAPVS----SMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAF 56
MAF N++G++L+Q ++ + +S S+ +R MSSSKLF+GGLSY D+ SL++AF
Sbjct: 1 MAFFNRVGSILKQSVSKHSNLELSASNASLFQAIRSMSSSKLFVGGLSYGTDESSLKEAF 60
Query: 57 TTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQ 115
+ YGDV+EARVI DR+TGRSRGFGF++F S E A SAL +MDGQDL+GR IRV+YA +++
Sbjct: 61 SQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQAMDGQDLHGRRIRVNYATEKR 120
Query: 116 AGGPRPGGGYGGGGG---YSGGGGGYSGGGG 143
G GGGYGGGGG Y G GG +G GG
Sbjct: 121 RAG--FGGGYGGGGGGFNYGGEGGNSAGAGG 149
>pir||T15047 RNA binding protein 3 - wood tobacco gi|2366750|dbj|BAA22083.1| RNA
binding protein [Nicotiana sylvestris]
Length = 144
Score = 155 bits (392), Expect = 2e-37
Identities = 85/140 (60%), Positives = 104/140 (73%), Gaps = 8/140 (5%)
Query: 1 MAFCNKIGNLLRQ---GATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFT 57
MAF NK+G LLRQ G S +P+ SML+ +R MS+ KLF+GGLS+ DDQSLRDAF
Sbjct: 1 MAFYNKLGGLLRQSISGNAVSATSPMPSMLDAVRCMST-KLFVGGLSWGTDDQSLRDAFA 59
Query: 58 TYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQA 116
T+GDVV+ARVI DR++GRSRGFGFVNF+ +E A A+ +MDGQ+L GRNIRVS A +R
Sbjct: 60 TFGDVVDARVIVDRDSGRSRGFGFVNFSDDECANEAIKAMDGQELQGRNIRVSIAQER-- 117
Query: 117 GGPRPGGGYGGGGGYSGGGG 136
PR GG G GGG+ GG G
Sbjct: 118 -APRSGGFGGSGGGFGGGYG 136
>ref|NP_914833.1| putative glycine-rich RNA-binding protein 2 [Oryza sativa (japonica
cultivar-group)] gi|2624328|emb|CAA05729.1| OsGRP2
[Oryza sativa (japonica cultivar-group)]
gi|19386753|dbj|BAB86134.1| OsGRP2 [Oryza sativa
(japonica cultivar-group)] gi|20805007|dbj|BAB92683.1|
OsGRP2 [Oryza sativa (japonica cultivar-group)]
gi|7439986|pir||T03586 glycine-rich RNA-binding protein
2 - rice
Length = 150
Score = 152 bits (383), Expect = 2e-36
Identities = 80/146 (54%), Positives = 104/146 (70%), Gaps = 3/146 (2%)
Query: 1 MAFCNKIGNLLRQ-GATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTY 59
MA NK+G+ LR G T S A S + + S+KLF+GGLS+N +D SL++AFT++
Sbjct: 1 MAAFNKLGSFLRHSGLTSSASAGSSPAMFNAARLMSTKLFVGGLSWNTNDDSLKEAFTSF 60
Query: 60 GDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQAGG 118
GDV EARVI DRE+GRSRGFGFV+F + + A SA+ +MDG++L GR+IRV++AN+R G
Sbjct: 61 GDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANERPPGN 120
Query: 119 PRPGGGYGGGGGYSGGGGGYSGGGGG 144
R GGGYGGGGG G GGY G G
Sbjct: 121 -RGGGGYGGGGGGYGNQGGYGDGNRG 145
>pir||T16961 RNA-binding protein RGP-3 - wood tobacco (fragment)
gi|1009363|dbj|BAA11089.1| RGP-3 [Nicotiana sylvestris]
Length = 144
Score = 141 bits (356), Expect = 3e-33
Identities = 79/131 (60%), Positives = 98/131 (74%), Gaps = 9/131 (6%)
Query: 1 MAFCNKIGNLLRQ---GATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFT 57
MAF NK+G LLRQ G S +P+ SML+ +R MS+ KLF+GGLS+ DDQSLRDAF
Sbjct: 1 MAFYNKLGGLLRQSISGNAVSATSPMKSMLDAVRCMST-KLFVGGLSWGTDDQSLRDAFA 59
Query: 58 TYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQA 116
T+GDVV+ARVI DR++GRSRGFGFVNF+ +E A A+ +MDGQ+L GRNIRV A +R
Sbjct: 60 TFGDVVDARVIVDRDSGRSRGFGFVNFSDDECANEAIKAMDGQELQGRNIRVRIAQER-- 117
Query: 117 GGPRPGGGYGG 127
PR GG+GG
Sbjct: 118 -APR-SGGFGG 126
>gb|AAT85299.1| glycine-rich RNA-binding protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 162
Score = 135 bits (339), Expect = 3e-31
Identities = 66/114 (57%), Positives = 90/114 (78%), Gaps = 6/114 (5%)
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ DD+SL AF+TYG+++++++I DRETGRSRGFGFV F+SE+S A+
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGY-GGGGGYSG--GGGGYSGGGGGGW 146
M+G++L+GRNI V+ A R++GG GGGY GGGGGY G GGGGY GGGGGG+
Sbjct: 69 MNGKELDGRNITVNEAQSRRSGG--GGGGYGGGGGGYGGGRGGGGYGGGGGGGY 120
>gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
gi|7439981|pir||S71779 glycine-rich RNA-binding protein
GRP1 - wheat
Length = 167
Score = 135 bits (339), Expect = 3e-31
Identities = 65/122 (53%), Positives = 87/122 (71%), Gaps = 12/122 (9%)
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ DD +L+ AF+ YG++++A++I DRETGRSRGFGFV F SEES A+
Sbjct: 7 RCFVGGLAWATDDNNLQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEE 66
Query: 96 MDGQDLNGRNIRVSYANDRQAGG-----------PRPGGGYGGGGGYSGGGGGYSGGGGG 144
M+G++L+GRNI V+ A R++GG GGGYGGGGGY GGGGGY G GGG
Sbjct: 67 MNGKELDGRNITVNEAQSRRSGGGGGGGGGYGGQRGGGGGYGGGGGYGGGGGGYGGQGGG 126
Query: 145 GW 146
G+
Sbjct: 127 GY 128
>gb|AAB07749.1| low temperature-responsive RNA-binding protein
gi|7439979|pir||S71453 glycine-rich RNA-binding protein,
low-temperature-responsive - barley
Length = 161
Score = 134 bits (337), Expect = 5e-31
Identities = 66/115 (57%), Positives = 87/115 (75%), Gaps = 10/115 (8%)
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL + DDQSL++AF+ YGDV+++++ITDRETGRSRGFGFV F S+E+ A+ +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGG------YSGGGGGYSGGGGG 144
M+GQDL+GRNI V+ A R++ G GGG+GGGGG GGGGGY GGGGG
Sbjct: 67 MNGQDLDGRNITVNEAQSRRSDG---GGGFGGGGGGYGGQRREGGGGGYGGGGGG 118
>emb|CAA05728.1| OsGRP1 [Oryza sativa (japonica cultivar-group)]
gi|7439987|pir||T04346 glycine-rich RNA-binding protein
- rice
Length = 160
Score = 133 bits (334), Expect = 1e-30
Identities = 64/113 (56%), Positives = 89/113 (78%), Gaps = 4/113 (3%)
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ DD+SL AF+T+G+++E+++I DRETGRSRGFGFV F+SE++ A+
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEG 68
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGYG--GGGGYSGGGGGYSGGGGGGW 146
M+G++L+GRNI V+ A R++GG GGGYG GGGG GGGGGY GGGGGG+
Sbjct: 69 MNGKELDGRNITVNEAQSRRSGG-GGGGGYGQRGGGGGYGGGGGYGGGGGGGY 120
>gb|AAB66884.1| glycine-rich protein [Oryza sativa]
Length = 162
Score = 132 bits (331), Expect = 2e-30
Identities = 64/114 (56%), Positives = 89/114 (77%), Gaps = 6/114 (5%)
Query: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-S 95
+ F+GGL++ DD+SL AF+TYG+++++++I DRETGRS GFGF+ F+SE+S A+
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSLGFGFITFSSEQSMRDAIEG 68
Query: 96 MDGQDLNGRNIRVSYANDRQAGGPRPGGGY-GGGGGYSG--GGGGYSGGGGGGW 146
M+G++L+GRNI V+ A R++GG GGGY GGGGGY G GGGGY GGGGGG+
Sbjct: 69 MNGKELDGRNITVNEAQSRRSGG--GGGGYGGGGGGYGGGRGGGGYGGGGGGGY 120
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,676,441
Number of Sequences: 2540612
Number of extensions: 14301848
Number of successful extensions: 519905
Number of sequences better than 10.0: 13439
Number of HSP's better than 10.0 without gapping: 10258
Number of HSP's successfully gapped in prelim test: 3333
Number of HSP's that attempted gapping in prelim test: 168309
Number of HSP's gapped (non-prelim): 129535
length of query: 146
length of database: 863,360,394
effective HSP length: 122
effective length of query: 24
effective length of database: 553,405,730
effective search space: 13281737520
effective search space used: 13281737520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146705.10