BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146683.12 - phase: 0
(480 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sati... 143 1e-32
gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza s... 142 2e-32
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 139 3e-31
ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sati... 138 3e-31
gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cult... 136 2e-30
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 135 2e-30
emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar... 133 1e-29
emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultiva... 132 2e-29
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 130 7e-29
emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa (japonica cultivar... 129 2e-28
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 127 6e-28
gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japon... 127 6e-28
gb|AAL66759.1| putative pol protein [Zea mays] 126 1e-27
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 126 2e-27
gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678... 125 3e-27
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 124 5e-27
emb|CAD41679.1| OSJNBa0019K04.26 [Oryza sativa (japonica cultiva... 124 9e-27
emb|CAE02851.4| OSJNBa0014F04.17 [Oryza sativa (japonica cultiva... 124 9e-27
ref|XP_474806.1| OSJNBa0014F04.17 [Oryza sativa (japonica cultiv... 123 1e-26
gb|AAX96502.1| Transposable element protein, putative [Oryza sat... 122 2e-26
>ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|29126367|gb|AAO66559.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 143 bits (361), Expect = 1e-32
Identities = 131/487 (26%), Positives = 216/487 (43%), Gaps = 52/487 (10%)
Query: 11 KYTSVKHDY---DTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGV 67
K + +DY T+ T SGKAP FNG +++ WK M + ++ +W I+E G
Sbjct: 13 KRATFPYDYPPTSTSYVSTYSGKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGY 70
Query: 68 DDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASL 127
+ + D H AQ I++++ +E+ ++ D +AK ++ +L
Sbjct: 71 VLQNPENPTKEDDENEHKNAQAA---------NAILSALSGSEFNRVDDIESAKVIWDTL 121
Query: 128 CANFEGSKKVKEAKALMLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQIL-KKSYVASDH 186
EG+ V+E+K +L Q+E F M D S +MY R +V+ ++ L K
Sbjct: 122 RNLHEGTDSVRESKVEILKGQFERFIMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVV 181
Query: 187 VSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPS 246
V K++R++ R VT I E D TL+ DL+ + H+M + E + + I S
Sbjct: 182 VKKMVRAITPRNSTLVTIIRERPDYKTLTPHDLLGRILAHDMLVQE--SKDVIQYINQSS 239
Query: 247 KGKTSKSSKAYKASESEEESPDGDSD-EDQSVKMAMLSNKLEYLARKQKKFL---SKRGS 302
K A KA E EEE+ S E +MA+ K R+ F SK S
Sbjct: 240 TTNIKKEDLALKAKEEEEENRKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYS 299
Query: 303 YKNSKKEDQKGCFNCKKPGHFIADCPDL------QKEKYKGKSKKSSFSSSKFRK--QIK 354
K+S + + C+ CK+PGHFIADCP L +++K KG+ K K+ K
Sbjct: 300 NKSSGRHSARMCYVCKEPGHFIADCPHLKDGSHIKEDKKKGEKKDEKKEKHKYSKWEHYG 359
Query: 355 KSLMATWEDLDSESGSDKEE-------------------ADDDAKAAMRLVATVSSEAVS 395
++ + DSES S EE +D+DA + +
Sbjct: 360 QAHLGMIFGSDSESSSSDEEGVATFAVKPSSPPRLFDYSSDEDAPICLMAKEPKVPSPLK 419
Query: 396 EAESD--SEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKTTLL 453
D S++E+EV ++ EL+ S+ + H + L ++++Y L +Q++ +
Sbjct: 420 SFNVDFVSDEEDEVEDEVMDDELLKSITK--ESIPHLSELLGRIEDQYATLERQEELLIH 477
Query: 454 ELKASEE 460
E + S E
Sbjct: 478 EKEQSHE 484
>gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 142 bits (358), Expect = 2e-32
Identities = 137/492 (27%), Positives = 222/492 (44%), Gaps = 56/492 (11%)
Query: 11 KYTSVKHDY---DTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGV 67
K + +DY T+ T SGKAP FNG +++ WK M + ++ +W I+E G
Sbjct: 13 KGATFPYDYPSTSTSYVSTYSGKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGY 70
Query: 68 DDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASL 127
++ D H AQ +I++++ +E+ ++ D +AK ++ +L
Sbjct: 71 VLQKPEDPTKEDDENEHKNAQAA---------NVILSALSGSEFNRVDDIESAKVIWDTL 121
Query: 128 CANFEGSKKVKEAKALMLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQIL-KKSYVASDH 186
EG+ V+E+K +L Q+E F M D S +MY +V+ ++ L K
Sbjct: 122 RNLHEGTDSVRESKVEILKGQFERFVMLDGESPSDMYDHLSKIVNEIKGLGSKDMTDEVV 181
Query: 187 VSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPS 246
V K++R++ R VT I E D TL+ DL+ + H+M + E+ + + I S
Sbjct: 182 VKKMVRAITLRNSTLVTIIRERPDYKTLTPHDLLGRILAHDMLV--QESKEVIQYINQSS 239
Query: 247 KGKTSKSSKAYKASESEEESPDGDSDED-QSVKMAMLSNKLEYLARKQ---KKFLSKRGS 302
K A KA E EEES S E+ +M + K R+ K SK S
Sbjct: 240 TTSIKKEDLALKAKEEEEESRKSKSKEEIDDEEMTLFVKKFGKFMRRSGFFKGSSSKHHS 299
Query: 303 YKNSKKEDQKGCFNCKKPGHFIADCPDLQ-----KEKYKGK---SKKSSFSSSKFRKQIK 354
K S + + C+ CK+PGHFIADCP L+ KE G+ KK SK R++
Sbjct: 300 NKLSGRHSARVCYVCKEPGHFIADCPYLKDGSHIKEDKMGEKKDEKKEKHKHSK-RERYG 358
Query: 355 KSLMATWEDLDSESGSDKEE-------------------ADDDAKAAMRLVATVSSEAVS 395
++ + DSES S EE +D+DA + ++
Sbjct: 359 QAHLGKIFGSDSESSSSDEEGIATFAVKPSSPPRLFNYSSDEDAPICLMAKEPKVPSSLK 418
Query: 396 EAESD--SEDENEVYSKIPRQELVDSL-KELLSLFEHRTNELTDLKEKYVDLMKQQKTTL 452
D S++E++V ++ +EL S+ KE L H + L ++++Y L ++Q+ L
Sbjct: 419 SFNVDLVSDEEDDVEDEVMDEELFKSITKESL---PHLSELLGRIEDQYATL-ERQEALL 474
Query: 453 LELKASEEELKG 464
+ K ELKG
Sbjct: 475 IREKERSHELKG 486
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 139 bits (349), Expect = 3e-31
Identities = 127/481 (26%), Positives = 217/481 (44%), Gaps = 66/481 (13%)
Query: 29 GKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQ 88
GKAP FNG +S WK M + + + +W I++ G AI T
Sbjct: 9 GKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEID 56
Query: 89 KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQ 148
+ + + + + S+ + E+ ++S+ TA ++ L EG+ + K+AK L Q
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 149 YELFRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEA 208
YE F M S+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT + +
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTMLINS 176
Query: 209 KDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPD 268
D++ ++ L+ + ++M ++ KK A PSK K E + +S
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEIEEASPSK----KCIALQAEVEDQSKSKV 227
Query: 269 GDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------CFNCKKPG 321
+ +ED +M +L+ + L ++K+ RGS N +K + CF C + G
Sbjct: 228 NEVNEDLEEEMVLLARRFNDLLGRRKE--RGRGSNSNRRKNRRPNKTLSNLRCFECGEKG 285
Query: 322 HFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK------SLMATW---EDLDSESGSDK 372
HF + CP + K KKS K K++KK + + W E+ + SGS++
Sbjct: 286 HFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEE 343
Query: 373 EEADDDAK-----------------AAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQE 415
E DD + A + L+A SS+ S ++S+S+D+ + + E
Sbjct: 344 EGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDE 400
Query: 416 LVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKTTLLELKASEEELKGF--NLIST 470
LV +EL + E + LK+ + L ++ KTT L S E+LK NL+ST
Sbjct: 401 LVSMFEELHTYSEKEIVKFKALKKDHASLEVLYEELKTTHERLTISHEKLKEAHDNLLST 460
Query: 471 T 471
T
Sbjct: 461 T 461
Score = 39.7 bits (91), Expect = 0.21
Identities = 82/357 (22%), Positives = 137/357 (37%), Gaps = 67/357 (18%)
Query: 19 YDTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAA 78
++ +K + K P + D ++ S K+ Y + L +E I E + + D +EE +A
Sbjct: 279 FECGEKGHFASKCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKI-EAFIGEWDSNEESSA 337
Query: 79 IDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVK 138
KK K+ + + P ++FA LC +GS KV
Sbjct: 338 SSGSEEEGGDDASSKKK-KMAVVAIKEAP--------------SLFAPLCLMAKGSSKVT 382
Query: 139 EAKALMLVHQYELFRMKDDGSIEEMYSRFQTL--VSGLQILKKSYVASDHVS-----KIL 191
+ E DD S +E+ S F+ L S +I+K + DH S + L
Sbjct: 383 S------LSDSESDDDCDDVSYDELVSMFEELHTYSEKEIVKFKALKKDHASLEVLYEEL 436
Query: 192 RSLPSRWRPKVTAIEEAKDLNTLSVE------DLVSSLKGHEMSLNEHETSKKSKSIA-- 243
++ R ++EA D N LS D+ S + S H S SI+
Sbjct: 437 KTTHERLTISHEKLKEAHD-NLLSTTQHGAHIDVDISCDLLDDSATCHIAHVASSSISTS 495
Query: 244 ------LPSKGKTSKS-------SKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLA 290
+PS +S S S + +E +E+ + ++ K N L+ +
Sbjct: 496 CDNLMDMPSPCSSSSSCVSICDASLVVENNELKEQVSKLNKSLERCFKG---KNTLDKIL 552
Query: 291 RKQKKFLSKRG----SYKNSK---------KEDQKGCFNCKKPGHFIADCPDLQKEK 334
+Q+ L+K G K K K + K C C++ GH ++DCP + K
Sbjct: 553 SEQRCILNKEGLGFIPKKGKKPSHHATRFVKRNGKYCSKCREVGHLVSDCPGSKPPK 609
>ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|30017555|gb|AAP12977.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1896
Score = 138 bits (348), Expect = 3e-31
Identities = 126/463 (27%), Positives = 205/463 (44%), Gaps = 66/463 (14%)
Query: 28 SGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVD----DLDLDEEGAAIDRRI 83
SG+AP F+G ++ WK M I+ L +W ++ G+D D++L E
Sbjct: 48 SGRAPHFDGT--HYAAWKHKMKLHIISLHPSIWKVVCTGIDVPHDDMELTSE-------- 97
Query: 84 HTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKAL 143
Q++L ++ ++ I++++ E+ K+ AKA++ +L EGS V+EAK
Sbjct: 98 ----QEQLIHRNDQVSNAILSALSPEEFNKVDRLEEAKAIWDTLQLAHEGSPAVREAKIE 153
Query: 144 MLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSK-ILRSLPSRWRPKV 202
+L + F M D + +EMY R LV+ ++ L + + V K +LR+ R V
Sbjct: 154 LLEGRLGRFVMDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLV 213
Query: 203 TAIEEAKDLNTLSVEDLVSSLKGHEMSLNE-HETSKKSKSIALPSKGKTSKSSKAYKASE 261
+ I E KD L+ D++ + HEM E E + K+ A+ A KA +
Sbjct: 214 SMIHERKDFKRLTPSDILGRIVSHEMQEEEAREVRQMVKNAAM-----IKNQEVALKAKQ 268
Query: 262 SEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------C 314
EE S + DE+ ++ + ++ K FL +R Y +K+D KG C
Sbjct: 269 EEESSCEESKDEEMAL-----------IVKRFKHFL-RRSGYGKERKDDDKGKRQSKRAC 316
Query: 315 FNCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMA-TWEDLDSESGSDKE 373
FNC + GHFIADCP + K KG KK + + ++ MA W D E K
Sbjct: 317 FNCGEYGHFIADCPKTNEAKGKGGKKKPECA------HVAEAHMAEVWYSEDEEDPKPKP 370
Query: 374 EADDDAKAAMRLVATVSSEAVSEA--------ESDSEDENEVYS-------KIPRQELVD 418
+ + + + VA SS + E SD D++ YS K+ Q+L
Sbjct: 371 KDKVEGEGGVATVAFKSSSSSKERLFMAQGHNLSDDNDDSYHYSCFMAQGRKVMTQKLSH 430
Query: 419 SLKELLSLFEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEE 461
+ S E NEL D+ + + Q L+ S+E+
Sbjct: 431 TSLNDDSSDEESDNELDDVLKSFSKPAMQHLAKLMRALDSKEQ 473
>gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1362
Score = 136 bits (342), Expect = 2e-30
Identities = 125/463 (26%), Positives = 203/463 (42%), Gaps = 66/463 (14%)
Query: 28 SGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVD----DLDLDEEGAAIDRRI 83
SG AP+F+G ++ WK M ++ L +W ++ GVD D++L E
Sbjct: 49 SGHAPQFDGT--HYAAWKHKMKLHLISLHPSIWKVVCTGVDVPHDDMELTSE-------- 98
Query: 84 HTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKAL 143
Q++L ++ + I++++ E+ K+ AK ++ +L EGS V+EAK
Sbjct: 99 ----QEQLIHRNAQASNAILSALSPEEFNKVDGLEEAKEIWDTLQLAHEGSPAVREAKIE 154
Query: 144 MLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSK-ILRSLPSRWRPKV 202
+L + F M D + +EMY R LV+ ++ L + + V K +LR+ R V
Sbjct: 155 LLEGRLGRFVMGDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLV 214
Query: 203 TAIEEAKDLNTLSVEDLVSSLKGHEMSLNE-HETSKKSKSIALPSKGKTSKSSKAYKASE 261
+ I E KD L+ D++ + HEM E E + K+ A+ A KA +
Sbjct: 215 SMIRERKDFKRLTPSDILGRIVSHEMQEEEAREVRQMVKNAAM-----IKNQEIALKAKQ 269
Query: 262 SEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------C 314
EE S + DE+ + ++ ++ K FL K G Y +K+D KG C
Sbjct: 270 EEESSCEESEDEEMA-----------FIVKRFKHFLRKSG-YGKGRKDDDKGKRQSKRAC 317
Query: 315 FNCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMA-TWEDLDSE------ 367
FNC + GHFIADCP + K KG KK R + ++ MA W D E
Sbjct: 318 FNCGEYGHFIADCPKSNEAKAKGGKKKPE------RAHVAEAHMAEVWYSRDEEDPEVKP 371
Query: 368 --SGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSEDENEVYS-------KIPRQELVD 418
DK E + ++ S E + SD +D++ YS K+ Q+
Sbjct: 372 KPKPKDKVEGEGGVATVAFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSH 431
Query: 419 SLKELLSLFEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEE 461
+ ++ S E NEL D+ + + Q L+ S+E+
Sbjct: 432 TSLDVDSSDEESDNELDDVLKSFSKPAMQHLAKLMRALYSKEQ 474
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 135 bits (341), Expect = 2e-30
Identities = 122/484 (25%), Positives = 223/484 (45%), Gaps = 64/484 (13%)
Query: 29 GKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQ 88
GKAP FNG +S WK M + + + +W I++ G AI T
Sbjct: 9 GKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEID 56
Query: 89 KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQ 148
+ + + + + S+ + E+ ++S+ TA ++ L EG+ + K+AK L Q
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQ 116
Query: 149 YELFRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEA 208
YE F M S+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT + +
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTMLINS 176
Query: 209 KDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPD 268
D++ ++ L+ + ++M ++ KK A PSK + +E E++
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSKKCIALQ------AEVEDKGKV 225
Query: 269 GDSDEDQSVKMAMLSNKL-EYLARKQKKFLSKRGSYKNSKKEDQK----GCFNCKKPGHF 323
D +++ ++A+L+ + ++L R++++ + + +K+ ++ CF C + GHF
Sbjct: 226 NDVNKNLEEEIALLARRFNDFLGRRKERGKGSNSNRRRNKRPNKTLSNLRCFECGEKGHF 285
Query: 324 IADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK------SLMATW---EDLDSESGSDKEE 374
+ CP + K KKS K K++KK + + W E+ + SGS +E+
Sbjct: 286 ASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEED 343
Query: 375 ADDDAK-----------------AAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQELV 417
DD + A + L+A SS+ S ++S+S+D+ + I ELV
Sbjct: 344 GDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DISYDELV 400
Query: 418 DSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKTTLLELKASEEELKGF--NLISTTY 472
+EL + E + LK+ + L ++ KT+ L S E+LK NL+STT
Sbjct: 401 SMFEELHAYSEKEIVKFKALKKDHASLEVLYEELKTSHERLTISHEKLKEAHDNLLSTTQ 460
Query: 473 EDRL 476
L
Sbjct: 461 HGAL 464
>emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar-group)]
gi|50923981|ref|XP_472351.1| OSJNBb0014D23.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1475
Score = 133 bits (334), Expect = 1e-29
Identities = 123/481 (25%), Positives = 214/481 (43%), Gaps = 66/481 (13%)
Query: 29 GKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQ 88
GKAP FNG +S WK M + + + +W I++ G AI T
Sbjct: 9 GKAPMFNGT--NYSTWKIKMSTHLKAMSFYIWSIVDVGF----------AITGTPLTEID 56
Query: 89 KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQ 148
+ + + + + S+ + E+ ++S+ TA ++ L EG+ + K+AK L Q
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 149 YELFRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEA 208
YE F M S+ +MY R +V+ L+ L +Y + K+LR+L ++ VT + +
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALSEKYETLVTMLINS 176
Query: 209 KDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPD 268
D++ ++ L+ + ++M ++ KK A PSK K E + +S
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEMKEASPSK----KCIALQAEVEDKSKSKV 227
Query: 269 GDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------CFNCKKPG 321
+ +ED +M +L+ K L ++K+ RGS N ++ + CF C + G
Sbjct: 228 NEVNEDLEEEMVLLARKFNDLLGRRKE--RGRGSNSNRRRNRRPNKTLSNLRCFECGEKG 285
Query: 322 HFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK------SLMATWEDLDSESGSD--KE 373
HF + CP + K KKS K K++KK + + W+ + S S +E
Sbjct: 286 HFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGFEE 343
Query: 374 EADDDAKAAMRLVATV------------------SSEAVSEAESDSEDENEVYSKIPRQE 415
+ DDA + + +A V SS+ S ++S+S+D+ + + E
Sbjct: 344 QCSDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDE 400
Query: 416 LVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKTTLLELKASEEELKGF--NLIST 470
LV +EL + E + LK+ + L ++ KT+ L S E+LK NL+ST
Sbjct: 401 LVSMFEELHAYSEKEIVKFKALKKDHASLEVLYEELKTSHERLTISHEKLKEAHDNLLST 460
Query: 471 T 471
T
Sbjct: 461 T 461
>emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultivar-group)]
gi|50922011|ref|XP_471366.1| OSJNBb0052B05.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1549
Score = 132 bits (333), Expect = 2e-29
Identities = 134/500 (26%), Positives = 218/500 (42%), Gaps = 63/500 (12%)
Query: 11 KYTSVKHDY---DTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGV 67
K + +DY T+ T SGKAP FNG +++ WK M + ++ +W I+E G
Sbjct: 13 KGATFPYDYPSTSTSYVSTYSGKAPYFNGT--DYAAWKHKMKMHLKSINPLIWRIVEKGY 70
Query: 68 DDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASL 127
+ +E D H AQ I++++ +E+ ++ +AK ++ +L
Sbjct: 71 VLQNPEEPTKENDENEHKNAQAA---------NAILSALSGSEFNRVDGIESAKVIWDTL 121
Query: 128 CANFEGSKKVKEAKALMLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQIL-KKSYVASDH 186
EG+ V+E+ +L Q+E F M D S +MY R +V+ ++ L K
Sbjct: 122 RNLHEGTDSVRESMVEILKGQFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVV 181
Query: 187 VSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPS 246
V K+++++ R VT I E D TL+ DL+ + H+M E E+ + + I
Sbjct: 182 VKKMVQAITPRNSTLVTIIRERPDYKTLTPHDLLGRILAHDML--EQESKEVIQYINQTL 239
Query: 247 KGKTSKSSKAYKASESEEESPDGDSD-EDQSVKMAMLSNKLEYLARKQKKFL---SKRGS 302
K + A KA E EE+S S E +MA+ K + ++ F SK S
Sbjct: 240 TTSIKKENLALKAKEEEEQSRKSKSKAEIDDEEMALFVKKFDKFMKQSGFFKGSSSKHSS 299
Query: 303 YKNSKKEDQKGCFNCKKPGHFIADCPDLQ-----KEKYKGKSKKSSFSSSKFRKQIKKSL 357
K+S + + C+ CK+PGHFIADCP ++ K+ K KK SK + + L
Sbjct: 300 NKSSGRHSARLCYVCKEPGHFIADCPHIKDCPHFKKDNKKLEKKEKHKHSKHDRYGQTHL 359
Query: 358 MATWEDLDSESGSDKEE-------------------ADDDAKAAM--------RLVATVS 390
+ DSES S EE +D+DA + + + +
Sbjct: 360 GMIFGS-DSESSSSDEEGVATFAVKPSSPPRLFNYSSDEDAPICLMAKEPKVPSALKSFN 418
Query: 391 SEAVSEAESDSEDENEVYSKIPRQELVDSLKELLS------LFEHRTNEL-TDLKEKYVD 443
+ VS+ E D ED E++ I ++ + K S L R N L + E V
Sbjct: 419 VDLVSDEEEDVED--ELFKSIAKESIPHLSKRNCSFVRKSGLMNSRVNLLRREKNEALVR 476
Query: 444 LMKQQKTTLLELKASEEELK 463
L KQ K + L+ + +L+
Sbjct: 477 LYKQTKESHANLEVANAQLQ 496
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 130 bits (328), Expect = 7e-29
Identities = 124/481 (25%), Positives = 215/481 (43%), Gaps = 66/481 (13%)
Query: 29 GKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQ 88
GKAP FNG +S WK M + + + +W I+ G AI T
Sbjct: 9 GKAPIFNGT--NYSTWKIKMSTHLKAMSFHIWSIVYVGF----------AITGTPLTEID 56
Query: 89 KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQ 148
+ + + + + S+ + E+ ++S+ TA ++ L EG+ + K+AK L Q
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 149 YELFRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEA 208
YE F M S+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT + +
Sbjct: 117 YETFYMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINS 176
Query: 209 KDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPD 268
D++ ++ L+ + ++M ++ KK A PSK K E + +S
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSK----KCIALQAEVEDKSKSKV 227
Query: 269 GDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------CFNCKKPG 321
+ +ED +M +L+ + L ++K+ RGS N ++ + CF + G
Sbjct: 228 NEVNEDLEEEMILLARRFNDLLERRKE--RGRGSNSNRRRNRRLNKTLSNLRCFEYGEKG 285
Query: 322 HFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK------SLMATW---EDLDSESGSDK 372
HF + CP + K KKS K K++KK + + W E+ + SGS++
Sbjct: 286 HFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEE 343
Query: 373 EEADDDAK-----------------AAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQE 415
E DD + A + L+A SS+ S ++S+S+D+ + + +E
Sbjct: 344 EGGDDASSKKKKMVVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYEE 400
Query: 416 LVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKTTLLELKASEEELKGF--NLIST 470
LV +EL + E + L + Y L ++ KT+ L S E+LK NL+ST
Sbjct: 401 LVSMFEELHAYSEKEIVKFKALNKDYASLDVLYEELKTSNERLTISHEKLKEAHDNLLST 460
Query: 471 T 471
T
Sbjct: 461 T 461
>emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa (japonica cultivar-group)]
gi|38346854|emb|CAD39936.2| OSJNBa0091C12.14 [Oryza
sativa (japonica cultivar-group)]
gi|50921857|ref|XP_471289.1| OSJNBa0091C12.14 [Oryza
sativa (japonica cultivar-group)]
Length = 393
Score = 129 bits (324), Expect = 2e-28
Identities = 106/364 (29%), Positives = 168/364 (46%), Gaps = 24/364 (6%)
Query: 21 TADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAID 80
T+ T S KAP FNG +++ WK M + ++ +W I+E G + ++ D
Sbjct: 26 TSYVSTYSSKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDD 83
Query: 81 RRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEA 140
H AQ I++++ +E+ ++ +AK ++ +L EG+ V+E+
Sbjct: 84 ENKHKNAQAA---------NAILSALSGSEFNRVDGIESAKVIWDTLRNLHEGTDSVRES 134
Query: 141 KALMLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQIL-KKSYVASDHVSKILRSLPSRWR 199
K + Q+E F M D S +MY R +V+ ++ L K V K++R++ R
Sbjct: 135 KVEIFKGQFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNS 194
Query: 200 PKVTAIEEAKDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKA 259
VT I E D TL+ DL+ + H++ + E + + + I S K A KA
Sbjct: 195 TLVTIIRERPDYKTLTPHDLLGRILAHDILVQE--SKEVIQYINQSSTTSIKKEDLALKA 252
Query: 260 SESEEESPDGDSDED-QSVKMAMLSNKLEYLARKQKKFL---SKRGSYKNSKKEDQKGCF 315
E EEES S E+ +M + K R+ F SK S K+S + + C+
Sbjct: 253 KEEEEESHKSKSKEEIDDEEMVLFVKKFGKFMRRSGFFKGNSSKHHSSKSSGRHSARVCY 312
Query: 316 NCKKPGHFIADCPDLQ-----KEKYKGKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGS 370
CK+PGHFIADCP L+ KE K KK + SK R+ ++ + DSES S
Sbjct: 313 VCKEPGHFIADCPHLKDGSHIKEDKKKDEKKEKYKHSK-REHYGQAHLGMIFSSDSESSS 371
Query: 371 DKEE 374
E
Sbjct: 372 SDGE 375
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 127 bits (320), Expect = 6e-28
Identities = 121/461 (26%), Positives = 201/461 (43%), Gaps = 49/461 (10%)
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK L + EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFEN 136
Query: 152 FRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++ I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 272 DEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGSYKNSKKEDQK-------GCF 315
DE + + +L + L + ++QK + R K K+ D K C
Sbjct: 244 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCH 303
Query: 316 NCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK---SLMATWEDLDSESGSDK 372
C+ GH IA+CP K+ KG S S + S+ + +L+ +E + S +D
Sbjct: 304 GCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALIGIFETAEDSSDTDS 363
Query: 373 EEADDDAKAAMRLVATVSSEAVSEAE-------SDSEDENEVYSKIPRQELVDSLKELLS 425
E D+ A+ R + + SE + + E +D E E E + K EL + L S
Sbjct: 364 EITFDELAASYRKLC-IKSEKILQQEAQLKKVIADLEAEKEAH-KEEISELKGEVGFLNS 421
Query: 426 LFEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEELKGFN 466
E+ T + L + L + LL A + GFN
Sbjct: 422 KLENMTKSIKMLNKGSDTL---DEVLLLGKNAGNQRGLGFN 459
>gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530636|ref|NP_919620.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042890|gb|AAM08718.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 1627
Score = 127 bits (320), Expect = 6e-28
Identities = 118/467 (25%), Positives = 207/467 (44%), Gaps = 65/467 (13%)
Query: 29 GKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQ 88
GKAP FNG +S WK M + + + +W I++ G AI T
Sbjct: 9 GKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEID 56
Query: 89 KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQ 148
+ + + + S + E+ ++S+ TA ++ L EG+ + K+AK L Q
Sbjct: 57 HCNLQLNAQAMNALFNSFSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 149 YELFRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEA 208
YE F M S+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT + +
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRALPKKYETLVTMLINS 176
Query: 209 KDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPD 268
D++ ++ L+ + ++M ++ KK A PSK K E + +S
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSK----KCIALQAEVEDKGKSKV 227
Query: 269 GDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------CFNCKKPG 321
++++D ++A+L+ + L ++K+ + RGS N ++ + CF C + G
Sbjct: 228 NEANDDLKEEIALLARRFNDLLGRRKERV--RGSNSNRRRNRRPNKTLSNLRCFECGEKG 285
Query: 322 HFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK------SLMATW---EDLDSESGSDK 372
HF + CP + K KKS K K++KK + + W E+ + SGS++
Sbjct: 286 HFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEE 343
Query: 373 EEADDDAK-----------------AAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQE 415
E DD + A + L+A SS+ S ++S+S+D+ + + E
Sbjct: 344 EGGDDASSKKKKMAVVVIKEAPTLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDE 400
Query: 416 LVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEEL 462
LV +EL + E + LK + L + ELK S E L
Sbjct: 401 LVSMFEELHAYSEKEIVKFKALKMDHASL----EVLYEELKTSHERL 443
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 126 bits (317), Expect = 1e-27
Identities = 127/482 (26%), Positives = 216/482 (44%), Gaps = 64/482 (13%)
Query: 12 YTSVKHDYDTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD 71
Y+ + H ++ GK P F+G E++ +W M S + L +W+I+E+G+ D
Sbjct: 81 YSRIPHSSNSHLLSIPLGKPPHFDG--EDYGFWSHKMRSHLFSLHPSIWEIVENGMK-FD 137
Query: 72 LDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANF 131
+ I+ +IH AQ +++AS+ R EY K+S AK ++ +L +
Sbjct: 138 SSDSPMLINEQIHRNAQATT---------VLLASLCREEYNKVSGLDNAKQIWDTLKISH 188
Query: 132 EGSKKVKEAKALMLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQILKKS-YVASDHVSKI 190
EG+ K ++ + F M + Y+R +TLV+ ++ + + D V +
Sbjct: 189 EGNDVTMLTKMELVEGELGRFAMIRGEEPTQTYNRLKTLVNKIRSYGSTRWTDHDVVRLM 248
Query: 191 LRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIAL----PS 246
LRS V I E +S E+++ M + E + + + P
Sbjct: 249 LRSFTVLDPHLVNNIRENPRYTKMSPEEILGKFVSGRMMIKEARYVDDALNGPIHEPQPI 308
Query: 247 KGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNS 306
K S+S +A + ++ E+ G +DE+ MA++ + + R +K+ +K +
Sbjct: 309 ALKASRSKEALPSKVAQIEAA-GLNDEE----MALIIKRFKTALRGRKEHPNK------T 357
Query: 307 KKEDQKGCFNCKKPGHFIADCP--DLQKEKYKGK-SKKSSFSSSKFRKQIKKSLMATWED 363
K + ++ CF C K GHFIA+CP D +EK GK KK ++ +K I K W+
Sbjct: 358 KTKGKRSCFKCGKIGHFIANCPDNDSDQEKKSGKWEKKKNYKKAKGEAHIGKE----WDS 413
Query: 364 LDSESGSDKE---------------EADDDAKAAMRLVATVSSEAVSEAESDSEDENEV- 407
S S SD E E A + V T +S S +E +S DE+EV
Sbjct: 414 DCSSSDSDNEGLAATAFNKSTLFPNERHTCLMAKEKKVCTRNSTYASSSEDESSDEDEVD 473
Query: 408 ---------YSKIPR-QELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKTTLLELKA 457
SKI + EL+D+L E L E + + L + +K+V+ QK+ LE+K
Sbjct: 474 YSCLFKGLDRSKIDKINELIDALNEKNILLEKQEDSLYEEHDKFVE---AQKSLALEIKR 530
Query: 458 SE 459
+E
Sbjct: 531 NE 532
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 126 bits (316), Expect = 2e-27
Identities = 118/466 (25%), Positives = 202/466 (43%), Gaps = 59/466 (12%)
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 136
Query: 152 FRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++ I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 272 DEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGSYKNSKKEDQK-------GCF 315
DE + + +L + L + ++QK + R K K+ D K C
Sbjct: 244 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCH 303
Query: 316 NCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK---SLMATWEDLDSESGSDK 372
C+ GH IA+CP K+ KG S S + S+ + +L +E + S +D
Sbjct: 304 GCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDS 363
Query: 373 EEADDDAKAAMRLVATVSSEAVSEAE-------SDSEDENEVYSKIPRQELVDSLKELLS 425
E D+ A+ R + + SE + + E +D E E E + +E + LK +
Sbjct: 364 EITFDELAASYRKLC-IKSEKILQQEAQLKKVIADLEAEKEAH-----EEEISELKGEVG 417
Query: 426 LFEHRTNELTDLKEKYVDLMKQQKTTLLEL-----KASEEELKGFN 466
N + +K + ++ + TL E+ A + GFN
Sbjct: 418 FL----NSKLETMKKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFN 459
>gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
gag-proteinase polyprotein - soybean retrovirus-like
element
Length = 640
Score = 125 bits (314), Expect = 3e-27
Identities = 117/450 (26%), Positives = 195/450 (43%), Gaps = 73/450 (16%)
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 91
D + +WK M +F+ LD W +++D LD EG D T + +L
Sbjct: 17 DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 76
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 136
Query: 152 FRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++ I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
L V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 197 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 272 DEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNSKKEDQK-------GC 314
DE + + +L + L + R+QK F ++GS + K+ D+K C
Sbjct: 244 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKRSDEKPSHSKGFQC 302
Query: 315 FNCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH A+CP K++ KG S S +D +SE SD +
Sbjct: 303 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESDSDR 344
Query: 375 ADDDAKAAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
A++ +ED ++ S+I EL S +EL E +
Sbjct: 345 ---------------DVNALTGRFESAEDSSDTDSEITFDELATSYRELCIKSEKILQQE 389
Query: 435 TDLKEKYVDLMKQQKTTLLELKASEEELKG 464
LK+ +L +++ E+ ELKG
Sbjct: 390 AQLKKVIANLEAEKEAHEEEI----SELKG 415
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 124 bits (312), Expect = 5e-27
Identities = 120/461 (26%), Positives = 199/461 (43%), Gaps = 49/461 (10%)
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFEN 136
Query: 152 FRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++ I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D ++
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLNT 243
Query: 272 DEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGSYKNSKKEDQK-------GCF 315
DE + + +L + L + ++QK + R K KK D K C
Sbjct: 244 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKGIQCH 303
Query: 316 NCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKK---SLMATWEDLDSESGSDK 372
C+ GH IA+CP K+ KG S S + S+ + +L +E + S +D
Sbjct: 304 GCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDS 363
Query: 373 EEADDDAKAAMRLVATVSSEAVSEAE-------SDSEDENEVYSKIPRQELVDSLKELLS 425
E D+ + R + + SE + + E +D E E E + K EL + L S
Sbjct: 364 EITFDELATSYRKLC-IKSEKILQQEAQLKKVIADLEAEKEAH-KEEISELKGEVGFLNS 421
Query: 426 LFEHRTNELTDLKEKYVDLMKQQKTTLLELKASEEELKGFN 466
E+ T + L + L + LL A + GFN
Sbjct: 422 KLENMTKSIKMLNKGSDTL---DEVLLLGKNAGNQRGLGFN 459
>emb|CAD41679.1| OSJNBa0019K04.26 [Oryza sativa (japonica cultivar-group)]
gi|50928129|ref|XP_473592.1| OSJNBa0019K04.26 [Oryza
sativa (japonica cultivar-group)]
Length = 559
Score = 124 bits (310), Expect = 9e-27
Identities = 114/456 (25%), Positives = 206/456 (45%), Gaps = 50/456 (10%)
Query: 28 SGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPA 87
SG+AP F+G ++ WK M ++ L +W ++ G+D + D E T
Sbjct: 48 SGRAPHFDGT--HYAAWKHKMKLHLISLHPSIWKVVCTGIDVPNDDME--------LTSE 97
Query: 88 QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVH 147
Q++L ++ + I++++ E+ K AK ++ +L EGS V+E K +L
Sbjct: 98 QEQLIHRNAQASNTILSALSPKEFNKFDGLEEAKEIWDTLQLAHEGSPAVREDKIELLEG 157
Query: 148 QYELFRMKDDGSIEEMYSRFQTLVSGLQILKKSYVASDHVSK-ILRSLPSRWRPKVTAIE 206
+ F M D + +EMY R LV+ ++ + + V K +LR+ R V+ I
Sbjct: 158 RLGRFVMDDKETPQEMYDRMMILVNKIKGFGSEDMTNHFVVKRLLRAFGPRNPTLVSMIR 217
Query: 207 EAKDLNTLSVEDLVSSLKGHEMSLNE-HETSKKSKSIALPSKGKTSKSSKAYKASESEEE 265
E KD L+ D++ + HEM E E + K+ A+ + + ++K + S EE
Sbjct: 218 ERKDFKRLTPSDILGRIVSHEMQEEEAREVRQMVKNAAMIKNQEVALNAKQEEESSCEE- 276
Query: 266 SPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIA 325
K++ L+ ++ + ++ K K++ ++ CFNC + GHFIA
Sbjct: 277 -------------------KIQALSSQEWLWQGRKDDDKG-KRQSERACFNCGEYGHFIA 316
Query: 326 DCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADD----DAKA 381
DCP + K KG KK + +K ++ W D E+ DK + + +
Sbjct: 317 DCPKTNEAKAKGDKKKPERA-----HVVKAHMVEVWYSEDEEASEDKPKPKPKDKIEGEG 371
Query: 382 AMRLVATVSSEAVSEA----ESDSEDENEVYSKIPRQ--ELVDSLKELLSLFEHRTNELT 435
+ VA SS + E SD +D++ YS Q +++ SL + ++E T
Sbjct: 372 GIATVAFKSSSSSKECLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLDDDSSDEET 431
Query: 436 DLKEKYVDLMKQQKTTLLELKASEEELKGFNLISTT 471
L++ V+ Q+K +L+ + E++ L S+T
Sbjct: 432 SLRD--VNETLQEKFAILDKSHKDLEVQLDTLWSST 465
>emb|CAE02851.4| OSJNBa0014F04.17 [Oryza sativa (japonica cultivar-group)]
Length = 491
Score = 124 bits (310), Expect = 9e-27
Identities = 126/481 (26%), Positives = 204/481 (42%), Gaps = 44/481 (9%)
Query: 11 KYTSVKHDY---DTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGV 67
K + +DY T+ T SGKA FNG ++ WK M + ++ +W I+E G
Sbjct: 13 KGAKIPYDYPPTSTSYVSTFSGKASYFNGT--DYVAWKHKMKMHLKSINPSIWRIVEKGY 70
Query: 68 DDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASL 127
+ ++ D H AQ I++++ +E+ + +AK ++ +L
Sbjct: 71 VLQNPEDPTKEDDENEHKNAQAA---------NAILSALSESEFNCVDGIESAKVIWDTL 121
Query: 128 CANFEGSKKVKEAKALMLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQIL-KKSYVASDH 186
EG+ V+E+K +L Q+E F M D S +MY R +V+ ++ L K
Sbjct: 122 QNLHEGTNSVRESKVEILKGQFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVV 181
Query: 187 VSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPS 246
V K++R++ R VT I E D TL+ DL+ + H+M + E + + I S
Sbjct: 182 VKKMVRAITPRNSTLVTIIRERPDYKTLTPHDLLGHILAHDMLVQE--SKDVIQYINQSS 239
Query: 247 KGKTSKSSKAYKASESEEESPDGDSD-EDQSVKMAMLSNKLEYLARKQKKFL---SKRGS 302
K A KA + EEE+ S E +MA+ K R+ F S S
Sbjct: 240 TTSIKKEDLALKAKKEEEENRKSKSKAEIDDEEMALFVKKFSKFMRRSGFFKGGSSNHYS 299
Query: 303 YKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMATW- 361
K+S + + C+ CK+PGHFI DCP L+ + + KK + +++ K S +
Sbjct: 300 NKSSGRHSTRVCYVCKEPGHFITDCPHLKDGSHIKEDKKKGEKKDEKKEKHKHSKREHYG 359
Query: 362 -EDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSEDE----NEVYSKIPRQE- 415
L GSD + + D + A SS S ED SK+P
Sbjct: 360 QAHLGMIFGSDSKLSSSDEEGAATFTVKPSSPPRLFDHSSDEDAPICLMAKESKVPSPHK 419
Query: 416 ------LVDSLKELL--SLFEHRTNE--------LTDLKEKYVDLMKQQKTTLLELKASE 459
+ D E+L LF+ T E L ++++Y L +Q+ + E + S
Sbjct: 420 SFNVDLVSDEEDEVLDDELFKSITKESLPHLSELLGRIEDQYATLERQEALLIREKERSY 479
Query: 460 E 460
E
Sbjct: 480 E 480
>ref|XP_474806.1| OSJNBa0014F04.17 [Oryza sativa (japonica cultivar-group)]
Length = 491
Score = 123 bits (309), Expect = 1e-26
Identities = 126/481 (26%), Positives = 203/481 (42%), Gaps = 44/481 (9%)
Query: 11 KYTSVKHDY---DTADKKTDSGKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGV 67
K + +DY T+ T SGKA FNG ++ WK M + ++ +W I+E G
Sbjct: 13 KGAKIPYDYPPTSTSYVSTFSGKASYFNGT--DYVAWKHKMKMHLKSINPSIWRIVEKGY 70
Query: 68 DDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASL 127
+ ++ D H AQ I++++ +E+ + +AK ++ +L
Sbjct: 71 VLQNPEDPTKEDDENEHKNAQAA---------NAILSALSESEFNCVDGIESAKVIWDTL 121
Query: 128 CANFEGSKKVKEAKALMLVHQYELFRMKDDGSIEEMYSRFQTLVSGLQIL-KKSYVASDH 186
EG+ V+E+K +L Q+E F M D S +MY R +V+ ++ L K
Sbjct: 122 QNLHEGTNSVRESKVEILKGQFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVV 181
Query: 187 VSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPS 246
V K++R++ R VT I E D TL+ DL+ + H+M + E + + I S
Sbjct: 182 VKKMVRAITPRNSTLVTIIRERPDYKTLTPHDLLGHILAHDMLVQE--SKDVIQYINQSS 239
Query: 247 KGKTSKSSKAYKASESEEESPDGDSD-EDQSVKMAMLSNKLEYLARKQKKFL---SKRGS 302
K A KA + EEE S E +MA+ K R+ F S S
Sbjct: 240 TTSIKKEDLALKAKKEEEEXRKSKSKAEIDDEEMALFVKKFSKFMRRSGFFKGGSSNHYS 299
Query: 303 YKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKYKGKSKKSSFSSSKFRKQIKKSLMATW- 361
K+S + + C+ CK+PGHFI DCP L+ + + KK + +++ K S +
Sbjct: 300 NKSSGRHSTRVCYVCKEPGHFITDCPHLKDGSHIKEDKKKGEKKDEKKEKHKHSKREHYG 359
Query: 362 -EDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSEAESDSEDE----NEVYSKIPRQE- 415
L GSD + + D + A SS S ED SK+P
Sbjct: 360 QAHLGMIFGSDSKLSSSDEEGAATFTVKPSSPPRLFDHSSDEDAPICLMAKESKVPSPHK 419
Query: 416 ------LVDSLKELL--SLFEHRTNE--------LTDLKEKYVDLMKQQKTTLLELKASE 459
+ D E+L LF+ T E L ++++Y L +Q+ + E + S
Sbjct: 420 SFNVDLVSDEEDEVLDDELFKSITKESLPHLSELLGRIEDQYATLERQEALLIREKERSY 479
Query: 460 E 460
E
Sbjct: 480 E 480
>gb|AAX96502.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 655
Score = 122 bits (307), Expect = 2e-26
Identities = 108/445 (24%), Positives = 198/445 (44%), Gaps = 63/445 (14%)
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 96
D +FS W + M S+IM D ++W + I I+T A K ++++
Sbjct: 13 DGTDFSHWCSRMQSYIMAKDYDIWRKVSHPY----------VIPEEINTTALKLEFEQNC 62
Query: 97 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYELFRMKD 156
K R I+++ I R++Y +++ A ++ +L +G+ +KE + + +Y F MK
Sbjct: 63 KARNILLSGISRSDYDRVAHLQAAHEIWIALSNFHQGTYNIKELRRGLFKKEYIKFEMKP 122
Query: 157 DGSIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSL-----PSRWRPKVTAIEEAKDL 211
++++ SRF ++S L+ + SY A+ S+I R S W KVT+I+E+ ++
Sbjct: 123 GEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTSIQESVNM 182
Query: 212 NTLSVEDLVSSLKGHEMSLNEHETSKKSKSIALPSKG-----KTSKSSKAYKASESEEES 266
+TL+++ L + LK HEM++ + KS ++ S +SKSS + + ++
Sbjct: 183 STLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSSSSLDVDTSSSKSSILTLFNATSDDQ 242
Query: 267 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 326
+ ED +A+++N++ A F + G + CF C H +
Sbjct: 243 LEQFEKED----LALVANRIA-RAMNNASFRKRGGPNR---------CFECGSIDHLRSH 288
Query: 327 CPDLQK--------EKYKGKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 378
CP L + EK K +F K ++ +KK+ + + S D + DDD
Sbjct: 289 CPKLGRGKREDKDGEKTNDNKPKGTFKGRKIKENLKKAFDQVYAAFEPLSDVDGDSGDDD 348
Query: 379 AKAAMRLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLK 438
+ + V A E++S+ ED NEV S FE N L+
Sbjct: 349 KG---KNIFGVRFMARGESDSECED-NEV-----------------SAFEEAINILSAKN 387
Query: 439 EKYVDLMKQQKTTLLELKASEEELK 463
+K + ++Q+ + L + LK
Sbjct: 388 KKCEKMYRKQEFIIESLNSEIARLK 412
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.308 0.126 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 757,966,271
Number of Sequences: 2540612
Number of extensions: 31806561
Number of successful extensions: 190105
Number of sequences better than 10.0: 3673
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 3253
Number of HSP's that attempted gapping in prelim test: 177379
Number of HSP's gapped (non-prelim): 9968
length of query: 480
length of database: 863,360,394
effective HSP length: 132
effective length of query: 348
effective length of database: 527,999,610
effective search space: 183743864280
effective search space used: 183743864280
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 77 (34.3 bits)
Medicago: description of AC146683.12