BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146681.8 + phase: 0
(173 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD21768.1| unknown protein [Arabidopsis thaliana] gi|2537129... 131 9e-30
ref|NP_179611.2| leucine-rich repeat family protein [Arabidopsis... 131 9e-30
ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium... 35 0.66
dbj|BAB76154.1| alr4455 [Nostoc sp. PCC 7120] gi|25534022|pir||A... 34 1.9
emb|CAB11063.2| SPAC6B12.01 [Schizosaccharomyces pombe] 33 2.5
ref|NP_593756.1| hypothetical protein SPAC6B12.01 [Schizosacchar... 33 2.5
sp|O14206|YDD3_SCHPO Hypothetical protein C1B9.03c in chromosome I 33 2.5
gb|AAL64094.1| valyl-tRNA synthetase [Pyrobaculum aerophilum str... 33 3.3
gb|EAL33416.1| GA17965-PA [Drosophila pseudoobscura] 33 3.3
ref|XP_322028.2| ENSANGP00000004153 [Anopheles gambiae str. PEST... 33 4.3
gb|AAV63269.1| unknown protein [Streptococcus thermophilus CNRZ1... 33 4.3
ref|YP_140165.1| hypothetical protein stu1751 [Streptococcus the... 33 4.3
ref|YP_037110.1| hypothetical protein BT9727_2786 [Bacillus thur... 32 5.6
gb|EAA75031.1| hypothetical protein FG06089.1 [Gibberella zeae P... 32 7.3
ref|XP_532232.1| PREDICTED: similar to Midasin (MIDAS-containing... 32 7.3
ref|NP_861720.1| gp61 DNA primase subunit [Enterobacteria phage ... 32 7.3
emb|CAC18279.2| related to the component Tra1 of the SAGA comple... 32 7.3
gb|AAH38417.1| DEAH (Asp-Glu-Ala-His) box polypeptide 30, isofor... 32 7.3
gb|AAM91556.1| unknown protein [Arabidopsis thaliana] gi|3069935... 32 7.3
dbj|BAA74913.2| KIAA0890 protein [Homo sapiens] 32 7.3
>gb|AAD21768.1| unknown protein [Arabidopsis thaliana] gi|25371297|pir||E84586
hypothetical protein At2g20220 [imported] - Arabidopsis
thaliana
Length = 190
Score = 131 bits (329), Expect = 9e-30
Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 6/154 (3%)
Query: 9 SLITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQDV 68
SL LCI L QLL ++ IP +YELPS LLD +++ L AL F +MPF +
Sbjct: 6 SLAFLCIQSLKIQLLESDNP----IPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCL 61
Query: 69 NEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQ-PSDWQKAYWEAHLQNC 127
+ + D RKR+R+ L ++W+ LF+LRWPD +++++ P+DWQ+ YWE HLQNC
Sbjct: 62 DSYESGDDCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNC 121
Query: 128 LDEAAEIALISPFKGRLADINISGTMLSCFLCNE 161
+DEAAE+AL F GR+ IN+S +L ++C+E
Sbjct: 122 VDEAAEVALRPTFSGRICSINVSDNILR-YICHE 154
>ref|NP_179611.2| leucine-rich repeat family protein [Arabidopsis thaliana]
Length = 604
Score = 131 bits (329), Expect = 9e-30
Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 6/154 (3%)
Query: 9 SLITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQDV 68
SL LCI L QLL ++ IP +YELPS LLD +++ L AL F +MPF +
Sbjct: 6 SLAFLCIQSLKIQLLESDNP----IPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCL 61
Query: 69 NEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQ-PSDWQKAYWEAHLQNC 127
+ + D RKR+R+ L ++W+ LF+LRWPD +++++ P+DWQ+ YWE HLQNC
Sbjct: 62 DSYESGDDCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNC 121
Query: 128 LDEAAEIALISPFKGRLADINISGTMLSCFLCNE 161
+DEAAE+AL F GR+ IN+S +L ++C+E
Sbjct: 122 VDEAAEVALRPTFSGRICSINVSDNILR-YICHE 154
>ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease
subunit A [Mesorhizobium loti MAFF303099]
Length = 1170
Score = 35.4 bits (80), Expect = 0.66
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 4 EAPPSSLITLCIDHLANQLLFGEDEVIAII-----PVIYELPSHLLDDLISRLT 52
E PP+ L+ L + Q L+ EV A + P + ELP+H++DD ++RLT
Sbjct: 1115 EVPPAYLLQLALYRALLQPLYPGREVKAALLFTEAPRLIELPAHVMDDALARLT 1168
>dbj|BAB76154.1| alr4455 [Nostoc sp. PCC 7120] gi|25534022|pir||AG2362 hypothetical
protein alr4455 [imported] - Nostoc sp. (strain PCC
7120) gi|17231947|ref|NP_488495.1| hypothetical protein
alr4455 [Nostoc sp. PCC 7120]
Length = 253
Score = 33.9 bits (76), Expect = 1.9
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 94 AWQKLFELRWPDLINQIQPSDWQKAYWEAH--LQNCLDEAAEIALISPFKG 142
AW + E+ +P L + P +W K YWE LQN LD E+ +IS G
Sbjct: 70 AW--MAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLD--IEVPVISAVNG 116
>emb|CAB11063.2| SPAC6B12.01 [Schizosaccharomyces pombe]
Length = 372
Score = 33.5 bits (75), Expect = 2.5
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 19 ANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQDVNEEDFSRDDS 78
A+QLL + + I +I + + L+ + LYH H+H +++ ++D + S
Sbjct: 259 ASQLLKPKQQAIKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNFHEQS 318
Query: 79 TNNKRKRSRDWNLN 92
K KR ++ + N
Sbjct: 319 RALKEKRKKEQDEN 332
>ref|NP_593756.1| hypothetical protein SPAC6B12.01 [Schizosaccharomyces pombe 972h-]
gi|7492705|pir||T39008 probable mating protein - fission
yeast (Schizosaccharomyces pombe)
Length = 361
Score = 33.5 bits (75), Expect = 2.5
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 19 ANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQDVNEEDFSRDDS 78
A+QLL + + I +I + + L+ + LYH H+H +++ ++D + S
Sbjct: 248 ASQLLKPKQQAIKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNFHEQS 307
Query: 79 TNNKRKRSRDWNLN 92
K KR ++ + N
Sbjct: 308 RALKEKRKKEQDEN 321
>sp|O14206|YDD3_SCHPO Hypothetical protein C1B9.03c in chromosome I
Length = 389
Score = 33.5 bits (75), Expect = 2.5
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 19 ANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQDVNEEDFSRDDS 78
A+QLL + + I +I + + L+ + LYH H+H +++ ++D + S
Sbjct: 276 ASQLLKPKQQAIKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNFHEQS 335
Query: 79 TNNKRKRSRDWNLN 92
K KR ++ + N
Sbjct: 336 RALKEKRKKEQDEN 349
>gb|AAL64094.1| valyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
gi|18313245|ref|NP_559912.1| valyl-tRNA synthetase
[Pyrobaculum aerophilum str. IM2]
Length = 799
Score = 33.1 bits (74), Expect = 3.3
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 54 HALYHFHLHMPFQD-----VNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLIN 108
HALY+F H F D V ++R+ + +R+ W L TAW+ +L P
Sbjct: 638 HALYNFIWH-EFADHYIELVKSRAYNREGVFTEEEQRAAIWTLYTAWRYSLKLLAP---- 692
Query: 109 QIQPSDWQKAYWEAHLQNCLDEAAE 133
I P K + EA+ ++ DE E
Sbjct: 693 -IMPFVTDKIWREAYGRSIHDEMIE 716
>gb|EAL33416.1| GA17965-PA [Drosophila pseudoobscura]
Length = 1059
Score = 33.1 bits (74), Expect = 3.3
Identities = 18/64 (28%), Positives = 32/64 (49%), Gaps = 11/64 (17%)
Query: 78 STNNKRKRSRDWNL------NTAWQKLFE--LRWPDLINQIQP---SDWQKAYWEAHLQN 126
S + +KR+++W + N+ ++LF L W L+ + P + WE HL++
Sbjct: 165 SKDKLQKRAKEWKVSEETLRNSVMEELFRTNLSWSQLLEDLAPPICEQIRSCKWENHLES 224
Query: 127 CLDE 130
CL E
Sbjct: 225 CLGE 228
>ref|XP_322028.2| ENSANGP00000004153 [Anopheles gambiae str. PEST]
gi|55234199|gb|EAA01007.2| ENSANGP00000004153 [Anopheles
gambiae str. PEST]
Length = 1161
Score = 32.7 bits (73), Expect = 4.3
Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 10/64 (15%)
Query: 104 PDLINQIQPSDWQKAY------WEAHLQNCLDEAAEIALISPFKGRLADINISGTMLSCF 157
PD I I P + Q+AY ++ L + L + EIA + F+GR DI I +SC
Sbjct: 775 PDQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIII----MSCV 830
Query: 158 LCNE 161
NE
Sbjct: 831 RANE 834
>gb|AAV63269.1| unknown protein [Streptococcus thermophilus CNRZ1066]
gi|55823643|ref|YP_142084.1| hypothetical protein
str1751 [Streptococcus thermophilus CNRZ1066]
Length = 293
Score = 32.7 bits (73), Expect = 4.3
Identities = 30/108 (27%), Positives = 48/108 (43%), Gaps = 7/108 (6%)
Query: 41 SHLLDDLISRLTPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFE 100
SH DDL R T + H L +D+ + D + + + R ++ LN Q L+
Sbjct: 110 SHFTDDLNCRRTSFLILH-DLITSSEDLTKWDLPLQNEFLDLKSRHKE--LNAKDQTLYS 166
Query: 101 LRWPDLINQIQPSDWQKAYWEAHLQNCLDEAAEIALISPFKGRLADIN 148
L + D IN D KA+ EA L+ + L+S F+ D++
Sbjct: 167 LLFGDNINYQSTDDLLKAWKEAGLK----FLENVKLLSVFQNSPGDVS 210
>ref|YP_140165.1| hypothetical protein stu1751 [Streptococcus thermophilus LMG 18311]
gi|55737708|gb|AAV61350.1| unknown protein
[Streptococcus thermophilus LMG 18311]
Length = 293
Score = 32.7 bits (73), Expect = 4.3
Identities = 30/108 (27%), Positives = 48/108 (43%), Gaps = 7/108 (6%)
Query: 41 SHLLDDLISRLTPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFE 100
SH DDL R T + H L +D+ + D + + + R ++ LN Q L+
Sbjct: 110 SHFTDDLNCRRTSFLILH-DLITSSEDLTKWDLPLQNEFLDLKSRHKE--LNAKDQTLYS 166
Query: 101 LRWPDLINQIQPSDWQKAYWEAHLQNCLDEAAEIALISPFKGRLADIN 148
L + D IN D KA+ EA L+ + L+S F+ D++
Sbjct: 167 LLFGDNINYQSTDDLLKAWKEAGLK----FLENVKLLSVFQNSPGDVS 210
>ref|YP_037110.1| hypothetical protein BT9727_2786 [Bacillus thuringiensis serovar
konkukian str. 97-27] gi|49329506|gb|AAT60152.1|
conserved hypothetical protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
Length = 310
Score = 32.3 bits (72), Expect = 5.6
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 53 PHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQI 110
P+ L H+ M F+ +N ++ +D T K N A + + +W L+N++
Sbjct: 132 PYDLVHYKNTMKFKHINLSEYHFEDETEENEKIVEGIENNPALENIIPPKWYSLVNEL 189
>gb|EAA75031.1| hypothetical protein FG06089.1 [Gibberella zeae PH-1]
gi|46123423|ref|XP_386265.1| hypothetical protein
FG06089.1 [Gibberella zeae PH-1]
Length = 3880
Score = 32.0 bits (71), Expect = 7.3
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 11 ITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLH 62
+ LC+D+L L D ++A PVI EL + L D L PH HFH H
Sbjct: 852 LELCVDNLTADYL---DPIMA--PVIDELMTALFD----HLKPHPYSHFHAH 894
>ref|XP_532232.1| PREDICTED: similar to Midasin (MIDAS-containing protein) [Canis
familiaris]
Length = 5501
Score = 32.0 bits (71), Expect = 7.3
Identities = 25/87 (28%), Positives = 42/87 (47%), Gaps = 12/87 (13%)
Query: 72 DFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQI----QPSDWQKAYWEAHLQNC 127
D S++++ N K +RSRD ++TA Q L + + + I Q + Q W+ H
Sbjct: 5148 DLSQEETENEKPERSRDSTIHTAHQFLMDTVFQPFLKDISELRQELERQLEMWQPHESGN 5207
Query: 128 LDE---AAE-----IALISPFKGRLAD 146
+E AAE +AL +P +L +
Sbjct: 5208 PEEEKAAAEMWQSYLALTAPLSQQLCE 5234
>ref|NP_861720.1| gp61 DNA primase subunit [Enterobacteria phage RB69]
gi|32350333|gb|AAP75932.1| gp61 DNA primase subunit
[Enterobacteria phage RB69]
Length = 340
Score = 32.0 bits (71), Expect = 7.3
Identities = 14/32 (43%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
Query: 94 AWQKL-FELRWPDLINQIQPSDWQKAYWEAHL 124
+W +L F L WP L+N+IQP ++K E L
Sbjct: 147 SWNRLWFTLEWPKLVNKIQPGTYKKEIPEPRL 178
>emb|CAC18279.2| related to the component Tra1 of the SAGA complex [Neurospora
crassa]
Length = 3940
Score = 32.0 bits (71), Expect = 7.3
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 11 ITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLH 62
+ LC+D+L L D ++A PVI EL + L D L PH HFH H
Sbjct: 881 LELCVDNLTADYL---DPIMA--PVIDELMAALFD----HLKPHPYNHFHAH 923
>gb|AAH38417.1| DEAH (Asp-Glu-Ala-His) box polypeptide 30, isoform 2 [Homo sapiens]
gi|31455196|gb|AAH15029.1| DEAH (Asp-Glu-Ala-His) box
polypeptide 30, isoform 2 [Homo sapiens]
gi|20336290|ref|NP_055781.2| DEAH (Asp-Glu-Ala-His) box
polypeptide 30 isoform 2 [Homo sapiens]
Length = 1155
Score = 32.0 bits (71), Expect = 7.3
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 24 FGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
FG VI + +Y + H L+D++++L H H H H +D
Sbjct: 564 FGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESED 607
>gb|AAM91556.1| unknown protein [Arabidopsis thaliana] gi|30699356|ref|NP_178000.2|
expressed protein [Arabidopsis thaliana]
gi|24899661|gb|AAN65045.1| unknown protein [Arabidopsis
thaliana]
Length = 104
Score = 32.0 bits (71), Expect = 7.3
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 105 DLINQIQPSDWQKAYWEAHLQNCLDEA-AEIALISPFKGRLADINISGTMLSCFL 158
DLI+ I W + + E + +D AE+AL + K RLA N + LSC L
Sbjct: 10 DLIHAIFKHIWARRFRERERSDAIDATEAEVALGTTKKNRLASANANALKLSCEL 64
>dbj|BAA74913.2| KIAA0890 protein [Homo sapiens]
Length = 1210
Score = 32.0 bits (71), Expect = 7.3
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 24 FGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
FG VI + +Y + H L+D++++L H H H H +D
Sbjct: 619 FGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESED 662
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,900,906
Number of Sequences: 2540612
Number of extensions: 13049827
Number of successful extensions: 29066
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 29049
Number of HSP's gapped (non-prelim): 29
length of query: 173
length of database: 863,360,394
effective HSP length: 119
effective length of query: 54
effective length of database: 561,027,566
effective search space: 30295488564
effective search space used: 30295488564
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 70 (31.6 bits)
Medicago: description of AC146681.8