BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146651.2 - phase: 0
(384 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC79140.1| human Mi-2 autoantigen-like protein [Arabidopsis ... 191 3e-47
ref|XP_478218.1| chromodomain helicase DNA binding protein-like ... 141 3e-32
ref|XP_546747.1| PREDICTED: similar to chromodomain helicase DNA... 83 1e-14
emb|CAI19891.1| chromodomain helicase DNA binding protein 5 [Hom... 82 2e-14
emb|CAI19890.1| chromodomain helicase DNA binding protein 5 [Hom... 82 2e-14
ref|XP_525165.1| PREDICTED: similar to chromodomain helicase DNA... 82 2e-14
dbj|BAC86802.1| unnamed protein product [Homo sapiens] 82 2e-14
ref|XP_534909.1| PREDICTED: similar to Mi-2 protein [Canis famil... 82 3e-14
ref|XP_603530.1| PREDICTED: similar to chromodomain helicase DNA... 82 3e-14
ref|XP_617790.1| PREDICTED: similar to chromodomain helicase DNA... 82 3e-14
gb|AAH46866.1| B230399n07-prov protein [Xenopus laevis] 80 1e-13
emb|CAF97831.1| unnamed protein product [Tetraodon nigroviridis] 80 1e-13
ref|NP_666091.1| chromodomain helicase DNA binding protein 4 [Mu... 79 2e-13
ref|XP_232354.3| PREDICTED: chromodomain helicase DNA binding pr... 79 2e-13
ref|XP_536627.1| PREDICTED: similar to Chromodomain helicase-DNA... 79 2e-13
dbj|BAD90499.1| mKIAA4075 protein [Mus musculus] 79 2e-13
ref|XP_423840.1| PREDICTED: similar to chromodomain helicase DNA... 79 2e-13
ref|XP_416503.1| PREDICTED: similar to Chromodomain helicase DNA... 79 2e-13
emb|CAF92234.1| unnamed protein product [Tetraodon nigroviridis] 79 2e-13
dbj|BAC28749.1| unnamed protein product [Mus musculus] 79 2e-13
>gb|AAC79140.1| human Mi-2 autoantigen-like protein [Arabidopsis thaliana]
gi|9758384|dbj|BAB08833.1| helicase-like protein
[Arabidopsis thaliana] gi|15241584|ref|NP_199293.1|
chromodomain-helicase-DNA-binding family protein / CHD
family protein [Arabidopsis thaliana]
Length = 2228
Score = 191 bits (485), Expect = 3e-47
Identities = 128/354 (36%), Positives = 189/354 (53%), Gaps = 9/354 (2%)
Query: 19 LKRKRRKLPIGPDQSSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHD 78
+K+KRRKLP D K S+ D+ + SS+ + K+ LKT+ + SSK+KG+D
Sbjct: 1 MKQKRRKLPSILDILDQKVDSSMAFDSPEYTSSSKPS--KQRLKTDSTPERNSSKRKGND 58
Query: 79 GYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNL 138
G ++ECVICDLGG+LLCCDSCPRTYH CL+PPLKRIP GKW CP C ++ LKP+N L
Sbjct: 59 GNYFECVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKCSPNSEALKPVNRL 118
Query: 139 DSISRRARTKTVPVKSKAGVNPVNLEKVSGIFGNKHISKKRST-KAKSISTMGGKFFGMK 197
D+I++RARTKT SKAG E+ S I+ + IS ++S+ K KSIS K G +
Sbjct: 119 DAIAKRARTKTKKRNSKAG---PKCERASQIYCSSIISGEQSSEKGKSISAEESKSTGKE 175
Query: 198 PVLSPVDATCSDKPMDPSLESCMEGTSCADADEKNLNLSPTV-APMDRMSVSPDKEVLSP 256
SP+D CS + + +S D+ + PT P D E LS
Sbjct: 176 VYSSPMDG-CSTAELGHASADDRPDSSSHGEDDLGKPVIPTADLPSDAGLTLLSCEDLSE 234
Query: 257 SKITNLDANDDLLEEKPDLSCDKIPFRKTLVLAITVGGEEMGKRKHKVIGDNANQKKRRT 316
SK+++ + + EK + + +I KT V + G + KRK ++ + ++ +
Sbjct: 235 SKLSDTEKTHEAPVEKLEHASSEIVENKT-VAEMETGKGKRKKRKRELNDGESLERCKTD 293
Query: 317 EKGKKVVITPIKSKSGNNKVQTKQKSKTHKISISASKGDVGKKKSDAQQKDKVL 370
+K K ++ + S S K K K K ++ + K++ +K K L
Sbjct: 294 KKRAKKSLSKVGSSSQTTKSPESSKKKKKKNRVTLKSLSKPQSKTETPEKVKKL 347
>ref|XP_478218.1| chromodomain helicase DNA binding protein-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 2259
Score = 141 bits (356), Expect = 3e-32
Identities = 71/151 (47%), Positives = 91/151 (60%), Gaps = 10/151 (6%)
Query: 1 MKKESKSSAPTMLNKNWVLK--RKRRKLPIGPDQSSGKEQSNGKEDNSVASESSRSASAK 58
M KE S + + +WVLK RKR KL + P S + + + S K
Sbjct: 1 MMKERSSLCESAADGSWVLKYKRKRSKLTVSPS-------SEHDASSPILDSQMNNGSIK 53
Query: 59 RMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMG 118
+ +K + + + K +GHDGYFYECV CDLGGNLLCCDSCPRTYHL+CL+PPLKR P G
Sbjct: 54 KKIKHDTNISPSTKKIRGHDGYFYECVECDLGGNLLCCDSCPRTYHLECLNPPLKRAPPG 113
Query: 119 KWQCPSCFEENDQLKPLNNLDS-ISRRARTK 148
WQCP C + LK L+N D+ S+R RT+
Sbjct: 114 NWQCPRCRTKKVSLKLLDNADADTSKRERTR 144
>ref|XP_546747.1| PREDICTED: similar to chromodomain helicase DNA binding protein 5
[Canis familiaris]
Length = 2175
Score = 83.2 bits (204), Expect = 1e-14
Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 25 KLPIGPDQSSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTA------QFSSKKKGHD 78
K G + K+ S+ +ED S+ ++ +++E TA + KK+ D
Sbjct: 404 KFRFGGISNKRKKGSSSEEDEREESDLDSASIHSSSVRSEGSTALGKKSKRRRKKKRIDD 463
Query: 79 GYFYE------CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQL 132
G YE C +C GG ++ CD+CPR YHL CLDP L++ P GKW CP C +E Q
Sbjct: 464 GDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQW 523
Query: 133 KPLNNLD 139
+P ++ D
Sbjct: 524 EPKDDDD 530
Score = 72.4 bits (176), Expect = 2e-11
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 62 KTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQ 121
K ++ + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IP G+W
Sbjct: 526 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 585
Query: 122 CPSC 125
CP C
Sbjct: 586 CPRC 589
>emb|CAI19891.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
gi|56203111|emb|CAI19450.1| chromodomain helicase DNA
binding protein 5 [Homo sapiens]
gi|19773960|gb|AAL98962.1| chromodomain helicase DNA
binding protein 5 [Homo sapiens]
gi|51701343|sp|Q8TDI0|CHD5_HUMAN Chromodomain
helicase-DNA-binding protein 5 (CHD-5)
gi|24308089|ref|NP_056372.1| chromodomain helicase DNA
binding protein 5 [Homo sapiens]
Length = 1954
Score = 82.4 bits (202), Expect = 2e-14
Identities = 42/113 (37%), Positives = 60/113 (52%), Gaps = 6/113 (5%)
Query: 33 SSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYE------CVI 86
SS +E + D AS S S ++ + + + KK+ DG YE C +
Sbjct: 289 SSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEV 348
Query: 87 CDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNLD 139
C GG ++ CD+CPR YHL CLDP L++ P GKW CP C +E Q +P ++ D
Sbjct: 349 CQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDD 401
Score = 72.4 bits (176), Expect = 2e-11
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 62 KTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQ 121
K ++ + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IP G+W
Sbjct: 397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 456
Query: 122 CPSC 125
CP C
Sbjct: 457 CPRC 460
>emb|CAI19890.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
gi|56203110|emb|CAI19449.1| chromodomain helicase DNA
binding protein 5 [Homo sapiens]
Length = 1225
Score = 82.4 bits (202), Expect = 2e-14
Identities = 42/113 (37%), Positives = 60/113 (52%), Gaps = 6/113 (5%)
Query: 33 SSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYE------CVI 86
SS +E + D AS S S ++ + + + KK+ DG YE C +
Sbjct: 289 SSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEV 348
Query: 87 CDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNLD 139
C GG ++ CD+CPR YHL CLDP L++ P GKW CP C +E Q +P ++ D
Sbjct: 349 CQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDD 401
Score = 72.4 bits (176), Expect = 2e-11
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 62 KTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQ 121
K ++ + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IP G+W
Sbjct: 397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 456
Query: 122 CPSC 125
CP C
Sbjct: 457 CPRC 460
>ref|XP_525165.1| PREDICTED: similar to chromodomain helicase DNA binding protein 5
[Pan troglodytes]
Length = 2473
Score = 82.4 bits (202), Expect = 2e-14
Identities = 42/113 (37%), Positives = 60/113 (52%), Gaps = 6/113 (5%)
Query: 33 SSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYE------CVI 86
SS +E + D AS S S ++ + + + KK+ DG YE C +
Sbjct: 600 SSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEV 659
Query: 87 CDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNLD 139
C GG ++ CD+CPR YHL CLDP L++ P GKW CP C +E Q +P ++ D
Sbjct: 660 CQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDD 712
Score = 72.8 bits (177), Expect = 2e-11
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 73 KKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEE 128
+++ D + C +C GG LLCCD+CP +YHL CL+PPL IP G+W CP C E
Sbjct: 720 EEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTVE 775
>dbj|BAC86802.1| unnamed protein product [Homo sapiens]
Length = 1225
Score = 82.4 bits (202), Expect = 2e-14
Identities = 42/113 (37%), Positives = 60/113 (52%), Gaps = 6/113 (5%)
Query: 33 SSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYE------CVI 86
SS +E + D AS S S ++ + + + KK+ DG YE C +
Sbjct: 289 SSSEEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEV 348
Query: 87 CDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNLD 139
C GG ++ CD+CPR YHL CLDP L++ P GKW CP C +E Q +P ++ D
Sbjct: 349 CQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDD 401
Score = 72.4 bits (176), Expect = 2e-11
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 62 KTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQ 121
K ++ + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IP G+W
Sbjct: 397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWL 456
Query: 122 CPSC 125
CP C
Sbjct: 457 CPRC 460
>ref|XP_534909.1| PREDICTED: similar to Mi-2 protein [Canis familiaris]
Length = 2933
Score = 82.0 bits (201), Expect = 3e-14
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 20 KRKR---RKLPIGPDQSSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKG 76
KRKR R PI + + + +D S+ S S S R ++ + KKKG
Sbjct: 304 KRKRSSVRAQPIPLSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTTKKKKKG 363
Query: 77 H------DGYFYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCF 126
DGY + C +C GG ++ CD+CPR YH+ CLDP +++ P GKW CP C
Sbjct: 364 EEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE 423
Query: 127 EENDQ 131
+E Q
Sbjct: 424 KEGIQ 428
Score = 71.2 bits (173), Expect = 5e-11
Identities = 35/88 (39%), Positives = 45/88 (50%), Gaps = 14/88 (15%)
Query: 38 QSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCD 97
Q KEDNS E + E G ++ D + C +C GG LLCCD
Sbjct: 428 QWEAKEDNSEGEE----------ILEEVG----GDPEEEDDHHMEFCRVCKDGGELLCCD 473
Query: 98 SCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
+CP +YH+ CL+PPL IP G+W CP C
Sbjct: 474 TCPSSYHIHCLNPPLPEIPNGEWLCPRC 501
>ref|XP_603530.1| PREDICTED: similar to chromodomain helicase DNA binding protein 5,
partial [Bos taurus]
Length = 460
Score = 82.0 bits (201), Expect = 3e-14
Identities = 42/113 (37%), Positives = 60/113 (52%), Gaps = 6/113 (5%)
Query: 33 SSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYE------CVI 86
SS +E + D AS S S ++ + + + KK+ DG YE C +
Sbjct: 148 SSSEEDEREESDFDSASIHSSSMRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEV 207
Query: 87 CDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNLD 139
C GG ++ CD+CPR YHL CLDP L++ P GKW CP C +E Q +P ++ D
Sbjct: 208 CQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDD 260
Score = 72.0 bits (175), Expect = 3e-11
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 78 DGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
D + C +C GG LLCCD+CP +YHL CL+PPL IP G+W CP C
Sbjct: 272 DDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 319
>ref|XP_617790.1| PREDICTED: similar to chromodomain helicase DNA binding protein 5,
partial [Bos taurus]
Length = 756
Score = 82.0 bits (201), Expect = 3e-14
Identities = 42/113 (37%), Positives = 60/113 (52%), Gaps = 6/113 (5%)
Query: 33 SSGKEQSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYE------CVI 86
SS +E + D AS S S ++ + + + KK+ DG YE C +
Sbjct: 232 SSSEEDEREESDFDSASIHSSSMRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEV 291
Query: 87 CDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNLD 139
C GG ++ CD+CPR YHL CLDP L++ P GKW CP C +E Q +P ++ D
Sbjct: 292 CQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDD 344
Score = 72.0 bits (175), Expect = 3e-11
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 78 DGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
D + C +C GG LLCCD+CP +YHL CL+PPL IP G+W CP C
Sbjct: 356 DDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 403
>gb|AAH46866.1| B230399n07-prov protein [Xenopus laevis]
Length = 1893
Score = 80.1 bits (196), Expect = 1e-13
Identities = 48/125 (38%), Positives = 61/125 (48%), Gaps = 20/125 (16%)
Query: 20 KRKRRK-----LPIGPDQSSGKEQSNGKEDNSVASESSRSA----SAKRMLKTEEGTAQF 70
KRKR + D G S D S S+SSRS + K+ K EEG A
Sbjct: 294 KRKRSSSEEEDIDADSDYDEGSMNSLSVSDGST-SKSSRSRKKLKATKKKKKEEEGAAA- 351
Query: 71 SSKKKGHDGYFYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCF 126
G DGY + C +C GG ++ CD+CPR YH+ CLDP + + P GKW CP C
Sbjct: 352 -----GADGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMDKAPEGKWSCPHCE 406
Query: 127 EENDQ 131
+E Q
Sbjct: 407 KEGVQ 411
Score = 69.7 bits (169), Expect = 1e-10
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 78 DGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
D + C +C GG LLCCD CP +YH+ CL+PPL IP G+W CP C
Sbjct: 436 DHHMEFCRVCKDGGELLCCDVCPSSYHIHCLNPPLPEIPNGEWLCPRC 483
>emb|CAF97831.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1989
Score = 79.7 bits (195), Expect = 1e-13
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 39 SNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDS 98
S+G +S + +S+ K+ ++TE+G + H Y C +C GG ++ CD+
Sbjct: 269 SDGSSRSSRPKKKPKSSKKKKKVETEDGDGY----ETDHQDY---CEVCQQGGEIILCDT 321
Query: 99 CPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQLKPLNNL 138
CPR YH+ CLDP +++ P GKW CP C +E Q + ++L
Sbjct: 322 CPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEARDDL 361
Score = 70.5 bits (171), Expect = 8e-11
Identities = 26/48 (54%), Positives = 33/48 (68%)
Query: 78 DGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
D + C +C GG LLCCD+CP +YH+ CL+PPL IP G+W CP C
Sbjct: 382 DHHIEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWICPRC 429
>ref|NP_666091.1| chromodomain helicase DNA binding protein 4 [Mus musculus]
gi|35193271|gb|AAH58578.1| Chromodomain helicase DNA
binding protein 4 [Mus musculus]
gi|51701319|sp|Q6PDQ2|CHD4_MOUSE Chromodomain
helicase-DNA-binding protein 4 (CHD-4)
Length = 1915
Score = 79.0 bits (193), Expect = 2e-13
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 20 KRKRRK-----LPIGPDQSSGKEQSNGKEDNSVASESSRSA----SAKRMLKTEEGTAQF 70
KRKR L + D S D S S SSRS +AK+ K EE
Sbjct: 297 KRKRSSSEDDDLDVESDFDDASINSYSVSDGST-SRSSRSRKKLRTAKKKKKGEEEVTAV 355
Query: 71 SSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEEND 130
+ H Y C +C GG ++ CD+CPR YH+ CLDP +++ P GKW CP C +E
Sbjct: 356 DGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGI 412
Query: 131 Q 131
Q
Sbjct: 413 Q 413
Score = 71.2 bits (173), Expect = 5e-11
Identities = 35/88 (39%), Positives = 45/88 (50%), Gaps = 14/88 (15%)
Query: 38 QSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCD 97
Q KEDNS E + E G ++ D + C +C GG LLCCD
Sbjct: 413 QWEAKEDNSEGEE----------ILEEVG----GDPEEEDDHHMEFCRVCKDGGELLCCD 458
Query: 98 SCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
+CP +YH+ CL+PPL IP G+W CP C
Sbjct: 459 TCPSSYHIHCLNPPLPEIPNGEWLCPRC 486
>ref|XP_232354.3| PREDICTED: chromodomain helicase DNA binding protein 4 [Rattus
norvegicus]
Length = 1960
Score = 79.0 bits (193), Expect = 2e-13
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 20 KRKRRK-----LPIGPDQSSGKEQSNGKEDNSVASESSRSA----SAKRMLKTEEGTAQF 70
KRKR L + D S D S S SSRS +AK+ K EE
Sbjct: 297 KRKRSSSEDDDLDVESDFDDASINSYSVSDGST-SRSSRSRKKLRTAKKKKKGEEEVTAV 355
Query: 71 SSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEEND 130
+ H Y C +C GG ++ CD+CPR YH+ CLDP +++ P GKW CP C +E
Sbjct: 356 DGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGI 412
Query: 131 Q 131
Q
Sbjct: 413 Q 413
Score = 71.2 bits (173), Expect = 5e-11
Identities = 35/88 (39%), Positives = 45/88 (50%), Gaps = 14/88 (15%)
Query: 38 QSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCD 97
Q KEDNS E + E G ++ D + C +C GG LLCCD
Sbjct: 413 QWEAKEDNSEGEE----------ILEEVG----GDPEEEDDHHMEFCRVCKDGGELLCCD 458
Query: 98 SCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
+CP +YH+ CL+PPL IP G+W CP C
Sbjct: 459 TCPSSYHIHCLNPPLPEIPNGEWLCPRC 486
>ref|XP_536627.1| PREDICTED: similar to Chromodomain helicase-DNA-binding protein 3
(CHD-3) (Mi-2 autoantigen 240 kDa protein) (Mi2-alpha)
[Canis familiaris]
Length = 602
Score = 79.0 bits (193), Expect = 2e-13
Identities = 38/102 (37%), Positives = 51/102 (49%), Gaps = 4/102 (3%)
Query: 31 DQSSGKEQS-NGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDL 89
D SG S +G+ D V ++ + R + G + + H Y C +C
Sbjct: 303 DLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKRKVAGEEEVDGYETDHQDY---CEVCQQ 359
Query: 90 GGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQ 131
GG ++ CD+CPR YHL CLDP L R P GKW CP C +E Q
Sbjct: 360 GGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 401
>dbj|BAD90499.1| mKIAA4075 protein [Mus musculus]
Length = 1945
Score = 79.0 bits (193), Expect = 2e-13
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 20 KRKRRK-----LPIGPDQSSGKEQSNGKEDNSVASESSRSA----SAKRMLKTEEGTAQF 70
KRKR L + D S D S S SSRS +AK+ K EE
Sbjct: 325 KRKRSSSEDDDLDVESDFDDASINSYSVSDGST-SRSSRSRKKLRTAKKKKKGEEEVTAV 383
Query: 71 SSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEEND 130
+ H Y C +C GG ++ CD+CPR YH+ CLDP +++ P GKW CP C +E
Sbjct: 384 DGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGI 440
Query: 131 Q 131
Q
Sbjct: 441 Q 441
Score = 71.2 bits (173), Expect = 5e-11
Identities = 35/88 (39%), Positives = 45/88 (50%), Gaps = 14/88 (15%)
Query: 38 QSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCD 97
Q KEDNS E + E G ++ D + C +C GG LLCCD
Sbjct: 441 QWEAKEDNSEGEE----------ILEEVG----GDPEEEDDHHMEFCRVCKDGGELLCCD 486
Query: 98 SCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
+CP +YH+ CL+PPL IP G+W CP C
Sbjct: 487 TCPSSYHIHCLNPPLPEIPNGEWLCPRC 514
>ref|XP_423840.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4;
Mi-2b, partial [Gallus gallus]
Length = 416
Score = 79.0 bits (193), Expect = 2e-13
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 3/93 (3%)
Query: 39 SNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDS 98
S+G S S A K+ E+ T + H Y C +C GG ++ CD+
Sbjct: 23 SDGSTSRSSRSRKKLKAGKKKKKGEEDSTVAVDGYETDHQDY---CEVCQQGGEIILCDT 79
Query: 99 CPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQ 131
CPR YH+ CLDP +++ P GKW CP C +E Q
Sbjct: 80 CPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 112
Score = 72.8 bits (177), Expect = 2e-11
Identities = 36/88 (40%), Positives = 47/88 (52%), Gaps = 14/88 (15%)
Query: 38 QSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCD 97
Q KEDNS E +L+ G A+ + D + C +C GG LLCCD
Sbjct: 112 QWEAKEDNSEGEE---------ILEDVVGDAE-----EEDDHHMEFCRVCKDGGELLCCD 157
Query: 98 SCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
+CP +YH+ CL+PPL IP G+W CP C
Sbjct: 158 ACPSSYHIHCLNPPLPEIPNGEWLCPRC 185
>ref|XP_416503.1| PREDICTED: similar to Chromodomain helicase DNA binding protein 4
[Gallus gallus]
Length = 2761
Score = 79.0 bits (193), Expect = 2e-13
Identities = 34/93 (36%), Positives = 47/93 (49%), Gaps = 3/93 (3%)
Query: 39 SNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDS 98
S+G S S A K+ E+ T + H Y C +C GG ++ CD+
Sbjct: 619 SDGSTSRSSRSRKKLKAGKKKKKGEEDSTVAVDGYETDHQDY---CEVCQQGGEIILCDT 675
Query: 99 CPRTYHLQCLDPPLKRIPMGKWQCPSCFEENDQ 131
CPR YH+ CLDP +++ P GKW CP C +E Q
Sbjct: 676 CPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 708
Score = 73.6 bits (179), Expect = 1e-11
Identities = 36/88 (40%), Positives = 47/88 (52%), Gaps = 14/88 (15%)
Query: 38 QSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCD 97
Q KEDNS E +L+ G A+ + D + C +C GG LLCCD
Sbjct: 708 QWEAKEDNSEGEE---------ILEDVVGDAE-----EEDDHHMEFCXVCKDGGELLCCD 753
Query: 98 SCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
+CP +YH+ CL+PPL IP G+W CP C
Sbjct: 754 ACPSSYHIHCLNPPLPEIPNGEWLCPRC 781
>emb|CAF92234.1| unnamed protein product [Tetraodon nigroviridis]
Length = 361
Score = 79.0 bits (193), Expect = 2e-13
Identities = 35/78 (44%), Positives = 45/78 (56%), Gaps = 7/78 (8%)
Query: 48 ASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQC 107
A+ RS S ++ KTEEG + H Y C +C GG ++ CD+CPR YHL C
Sbjct: 272 ATAKKRSKSGRKKKKTEEGDGY----ETDHQDY---CEVCQQGGEIILCDTCPRAYHLVC 324
Query: 108 LDPPLKRIPMGKWQCPSC 125
LDP L++ P GKW CP C
Sbjct: 325 LDPELEKAPEGKWSCPHC 342
>dbj|BAC28749.1| unnamed protein product [Mus musculus]
Length = 1045
Score = 79.0 bits (193), Expect = 2e-13
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 20 KRKRRK-----LPIGPDQSSGKEQSNGKEDNSVASESSRSA----SAKRMLKTEEGTAQF 70
KRKR L + D S D S S SSRS +AK+ K EE
Sbjct: 49 KRKRSSSEDDDLDVESDFDDASINSYSVSDGST-SRSSRSRKKLRTAKKKKKGEEEVTAV 107
Query: 71 SSKKKGHDGYFYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPMGKWQCPSCFEEND 130
+ H Y C +C GG ++ CD+CPR YH+ CLDP +++ P GKW CP C +E
Sbjct: 108 DGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGI 164
Query: 131 Q 131
Q
Sbjct: 165 Q 165
Score = 71.2 bits (173), Expect = 5e-11
Identities = 35/88 (39%), Positives = 45/88 (50%), Gaps = 14/88 (15%)
Query: 38 QSNGKEDNSVASESSRSASAKRMLKTEEGTAQFSSKKKGHDGYFYECVICDLGGNLLCCD 97
Q KEDNS E + E G ++ D + C +C GG LLCCD
Sbjct: 165 QWEAKEDNSEGEE----------ILEEVG----GDPEEEDDHHMEFCRVCKDGGELLCCD 210
Query: 98 SCPRTYHLQCLDPPLKRIPMGKWQCPSC 125
+CP +YH+ CL+PPL IP G+W CP C
Sbjct: 211 TCPSSYHIHCLNPPLPEIPNGEWLCPRC 238
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.311 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 652,872,712
Number of Sequences: 2540612
Number of extensions: 28278468
Number of successful extensions: 76472
Number of sequences better than 10.0: 1281
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 457
Number of HSP's that attempted gapping in prelim test: 74231
Number of HSP's gapped (non-prelim): 2311
length of query: 384
length of database: 863,360,394
effective HSP length: 130
effective length of query: 254
effective length of database: 533,080,834
effective search space: 135402531836
effective search space used: 135402531836
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)
Medicago: description of AC146651.2