BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146649.9 - phase: 0 /pseudo
(1684 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza s... 141 2e-31
ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sati... 141 2e-31
ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sati... 139 6e-31
gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cult... 139 8e-31
emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa (japonica cultivar... 136 5e-30
emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultiva... 134 2e-29
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 132 1e-28
gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japon... 130 4e-28
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 130 4e-28
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 129 7e-28
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 129 9e-28
gb|AAX92911.1| retrotransposon protein, putative, unclassified [... 129 1e-27
gb|AAX96502.1| Transposable element protein, putative [Oryza sat... 129 1e-27
gb|AAP52474.1| putative polyprotein [Oryza sativa (japonica cult... 128 1e-27
emb|CAI44607.1| P0650D04.11 [Oryza sativa (japonica cultivar-gro... 128 2e-27
emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar... 128 2e-27
emb|CAD41679.1| OSJNBa0019K04.26 [Oryza sativa (japonica cultiva... 127 4e-27
emb|CAE02851.4| OSJNBa0014F04.17 [Oryza sativa (japonica cultiva... 127 4e-27
gb|AAP51904.1| putative copia-type pol polyprotein [Oryza sativa... 126 6e-27
ref|XP_474806.1| OSJNBa0014F04.17 [Oryza sativa (japonica cultiv... 126 6e-27
>gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 141 bits (356), Expect = 2e-31
Identities = 121/434 (27%), Positives = 199/434 (44%), Gaps = 61/434 (14%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
SGKAP FNG +++ WK M ++ ++ +W I+E G + +K P
Sbjct: 33 SGKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGY-----------VLQKPEDPT 79
Query: 69 QKKTYKKHHKIRG--IIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALML 126
++ +H + +I++++ +E+ ++ D +AK ++ +L +EG+ VRE+K +L
Sbjct: 80 KEDDENEHKNAQAANVILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRESKVEIL 139
Query: 127 VHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKVTA 185
Q+E F M D ES +MY +V+ ++ L +T + +V K++R++ R VT
Sbjct: 140 KGQFERFVMLDGESPSDMYDHLSKIVNEIKGLGSKDMTDEVVVKKMVRAITLRNSTLVTI 199
Query: 186 IEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEE 245
I E D TL+ DL+ + H+M + ES + + I S K A KA E EE
Sbjct: 200 IRERPDYKTLTPHDLLGRILAHDMLV--QESKEVIQYINQSSTTSIKKEDLALKAKEEEE 257
Query: 246 ESPDGDSDED-HSVKMAMLSNKLEYLARKQ---KKFLSKRNGYKNWKREDQKGCFNCKKP 301
ES S E+ +M + K R+ K SK + K R + C+ CK+P
Sbjct: 258 ESRKSKSKEEIDDEEMTLFVKKFGKFMRRSGFFKGSSSKHHSNKLSGRHSARVCYVCKEP 317
Query: 302 GHFIADCPDLQ--------KEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDK 353
GHFIADCP L+ K K KK SK R++ ++ + DSES S
Sbjct: 318 GHFIADCPYLKDGSHIKEDKMGEKKDEKKEKHKHSK-RERYGQAHLGKIFGSDSESSSSD 376
Query: 354 EE-------------------ADDDAKAAMRL--------VATVSSEAVSESESDSEDE- 385
EE +D+DA + + + + + VS+ E D EDE
Sbjct: 377 EEGIATFAVKPSSPPRLFNYSSDEDAPICLMAKEPKVPSSLKSFNVDLVSDEEDDVEDEV 436
Query: 386 --NEVYSKIPRQEL 397
E++ I ++ L
Sbjct: 437 MDEELFKSITKESL 450
>ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|30017555|gb|AAP12977.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1896
Score = 141 bits (356), Expect = 2e-31
Identities = 110/396 (27%), Positives = 188/396 (46%), Gaps = 43/396 (10%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVD----DLDLDEEGAAIDRKI 64
SG+AP F+G ++ WK M +I+ L +W ++ G+D D++L E
Sbjct: 48 SGRAPHFDGT--HYAAWKHKMKLHIISLHPSIWKVVCTGIDVPHDDMELTSE-------- 97
Query: 65 HTPAQKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKAL 124
Q++ ++ ++ I++++ E+ K+ AKA++ +L +EGS VREAK
Sbjct: 98 ----QEQLIHRNDQVSNAILSALSPEEFNKVDRLEEAKAIWDTLQLAHEGSPAVREAKIE 153
Query: 125 MLVHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKV 183
+L + F M D E+ +EMY R LV+ ++ L +T+ +V ++LR+ R V
Sbjct: 154 LLEGRLGRFVMDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLV 213
Query: 184 TAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASES 243
+ I E KD L+ D++ + HEM E ++ A K + A KA +
Sbjct: 214 SMIHERKDFKRLTPSDILGRIVSHEMQEEEAREVRQMVKNAAMIKNQ----EVALKAKQE 269
Query: 244 EEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGH 303
EE S + DE+ MA++ + ++ R+ +++ K KR+ ++ CFNC + GH
Sbjct: 270 EESSCEESKDEE----MALIVKRFKHFLRRSGYGKERKDDDKG-KRQSKRACFNCGEYGH 324
Query: 304 FIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMA-TWEDLDSESGSDKEEADDDAKA 362
FIADCP + K K KKP + + ++ MA W D E K + + +
Sbjct: 325 FIADCPKTNEAKGKGGKKKPECA------HVAEAHMAEVWYSEDEEDPKPKPKDKVEGEG 378
Query: 363 AMRLVATVSSEAVSE--------SESDSEDENEVYS 390
+ VA SS + E + SD D++ YS
Sbjct: 379 GVATVAFKSSSSSKERLFMAQGHNLSDDNDDSYHYS 414
>ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|29126367|gb|AAO66559.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 139 bits (351), Expect = 6e-31
Identities = 114/386 (29%), Positives = 175/386 (44%), Gaps = 26/386 (6%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
SGKAP FNG +++ WK M ++ ++ +W I+E G + + D H A
Sbjct: 33 SGKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPENPTKEDDENEHKNA 90
Query: 69 QKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVH 128
Q I++++ +E+ ++ D +AK ++ +L +EG+ VRE+K +L
Sbjct: 91 QAAN---------AILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRESKVEILKG 141
Query: 129 QYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKVTAIE 187
Q+E F M D ES +MY R +V+ ++ L +T + +V K++R++ R VT I
Sbjct: 142 QFERFIMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIR 201
Query: 188 EAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEES 247
E D TL+ DL+ + H+M + ES + I S K A KA E EEE+
Sbjct: 202 ERPDYKTLTPHDLLGRILAHDMLV--QESKDVIQYINQSSTTNIKKEDLALKAKEEEEEN 259
Query: 248 PDGDSD-EDHSVKMAMLSNKLEYLARKQKKF---LSKRNGYKNWKREDQKGCFNCKKPGH 303
S E +MA+ K R+ F SK K+ R + C+ CK+PGH
Sbjct: 260 RKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYSNKSSGRHSARMCYVCKEPGH 319
Query: 304 FIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWE-----DLDSESGSDKEEADD 358
FIADCP L K S K+ K ++ +K + WE L GSD E +
Sbjct: 320 FIADCPHL---KDGSHIKEDKKKGEKKDEKKEKHKYSKWEHYGQAHLGMIFGSDSESSSS 376
Query: 359 DAKAAMRLVATVSSEAVSESESDSED 384
D + SS S ED
Sbjct: 377 DEEGVATFAVKPSSPPRLFDYSSDED 402
>gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1362
Score = 139 bits (350), Expect = 8e-31
Identities = 113/396 (28%), Positives = 185/396 (46%), Gaps = 43/396 (10%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVD----DLDLDEEGAAIDRKI 64
SG AP+F+G ++ WK M +++ L +W ++ GVD D++L E ++ I
Sbjct: 49 SGHAPQFDGT--HYAAWKHKMKLHLISLHPSIWKVVCTGVDVPHDDMELTSEQ---EQLI 103
Query: 65 HTPAQKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKAL 124
H AQ I++++ E+ K+ AK ++ +L +EGS VREAK
Sbjct: 104 HRNAQASN---------AILSALSPEEFNKVDGLEEAKEIWDTLQLAHEGSPAVREAKIE 154
Query: 125 MLVHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKV 183
+L + F M D E+ +EMY R LV+ ++ L +T+ +V ++LR+ R V
Sbjct: 155 LLEGRLGRFVMGDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLV 214
Query: 184 TAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASES 243
+ I E KD L+ D++ + HEM E ++ A K + A KA +
Sbjct: 215 SMIRERKDFKRLTPSDILGRIVSHEMQEEEAREVRQMVKNAAMIKNQEI----ALKAKQE 270
Query: 244 EEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGH 303
EE S + DE+ MA + + ++ RK +++ K KR+ ++ CFNC + GH
Sbjct: 271 EESSCEESEDEE----MAFIVKRFKHFLRKSGYGKGRKDDDKG-KRQSKRACFNCGEYGH 325
Query: 304 FIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMA-TWEDLDSE--------SGSDKE 354
FIADCP + K+K KKP R + ++ MA W D E DK
Sbjct: 326 FIADCPKSNEAKAKGGKKKPE------RAHVAEAHMAEVWYSRDEEDPEVKPKPKPKDKV 379
Query: 355 EADDDAKAAMRLVATVSSEAVSESESDSEDENEVYS 390
E + ++ S E + + SD +D++ YS
Sbjct: 380 EGEGGVATVAFKSSSSSKERLFNNLSDDDDDSYHYS 415
>emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa (japonica cultivar-group)]
gi|38346854|emb|CAD39936.2| OSJNBa0091C12.14 [Oryza
sativa (japonica cultivar-group)]
gi|50921857|ref|XP_471289.1| OSJNBa0091C12.14 [Oryza
sativa (japonica cultivar-group)]
Length = 393
Score = 136 bits (343), Expect = 5e-30
Identities = 106/357 (29%), Positives = 170/357 (46%), Gaps = 24/357 (6%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
S KAP FNG +++ WK M ++ ++ +W I+E G + ++ D H A
Sbjct: 33 SSKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDDENKHKNA 90
Query: 69 QKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVH 128
Q I++++ +E+ ++ +AK ++ +L +EG+ VRE+K +
Sbjct: 91 QAAN---------AILSALSGSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESKVEIFKG 141
Query: 129 QYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKVTAIE 187
Q+E F M D ES +MY R +V+ ++ L +T + +V K++R++ R VT I
Sbjct: 142 QFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIR 201
Query: 188 EAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEES 247
E D TL+ DL+ + H++ + ES + + I S K A KA E EEES
Sbjct: 202 ERPDYKTLTPHDLLGRILAHDILV--QESKEVIQYINQSSTTSIKKEDLALKAKEEEEES 259
Query: 248 PDGDSDED-HSVKMAMLSNKLEYLARKQKKF---LSKRNGYKNWKREDQKGCFNCKKPGH 303
S E+ +M + K R+ F SK + K+ R + C+ CK+PGH
Sbjct: 260 HKSKSKEEIDDEEMVLFVKKFGKFMRRSGFFKGNSSKHHSSKSSGRHSARVCYVCKEPGH 319
Query: 304 FIADCPDLQ-----KEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEE 355
FIADCP L+ KE K KK + SK R+ ++ + DSES S E
Sbjct: 320 FIADCPHLKDGSHIKEDKKKDEKKEKYKHSK-REHYGQAHLGMIFSSDSESSSSDGE 375
>emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultivar-group)]
gi|50922011|ref|XP_471366.1| OSJNBb0052B05.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1549
Score = 134 bits (338), Expect = 2e-29
Identities = 116/414 (28%), Positives = 190/414 (45%), Gaps = 51/414 (12%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
SGKAP FNG +++ WK M ++ ++ +W I+E G + +E D H A
Sbjct: 33 SGKAPYFNGT--DYAAWKHKMKMHLKSINPLIWRIVEKGYVLQNPEEPTKENDENEHKNA 90
Query: 69 QKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVH 128
Q I++++ +E+ ++ +AK ++ +L +EG+ VRE+ +L
Sbjct: 91 QAAN---------AILSALSGSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESMVEILKG 141
Query: 129 QYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKVTAIE 187
Q+E F M D ES +MY R +V+ ++ L +T + +V K+++++ R VT I
Sbjct: 142 QFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVQAITPRNSTLVTIIR 201
Query: 188 EAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEES 247
E D TL+ DL+ + H+M E ES + + I K + A KA E EE+S
Sbjct: 202 ERPDYKTLTPHDLLGRILAHDML--EQESKEVIQYINQTLTTSIKKENLALKAKEEEEQS 259
Query: 248 PDGDSD-EDHSVKMAMLSNKLEYLARKQ---KKFLSKRNGYKNWKREDQKGCFNCKKPGH 303
S E +MA+ K + ++ K SK + K+ R + C+ CK+PGH
Sbjct: 260 RKSKSKAEIDDEEMALFVKKFDKFMKQSGFFKGSSSKHSSNKSSGRHSARLCYVCKEPGH 319
Query: 304 FIADCPDLQ-----KEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEE--- 355
FIADCP ++ K+ +K KK SK + + L + DSES S EE
Sbjct: 320 FIADCPHIKDCPHFKKDNKKLEKKEKHKHSKHDRYGQTHLGMIFGS-DSESSSSDEEGVA 378
Query: 356 ----------------ADDDAKAAM--------RLVATVSSEAVSESESDSEDE 385
+D+DA + + + + + VS+ E D EDE
Sbjct: 379 TFAVKPSSPPRLFNYSSDEDAPICLMAKEPKVPSALKSFNVDLVSDEEEDVEDE 432
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 132 bits (331), Expect = 1e-28
Identities = 109/428 (25%), Positives = 193/428 (44%), Gaps = 57/428 (13%)
Query: 10 GKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQ 69
GKAP FNG +S WK M +++ + +W I++ G AI T
Sbjct: 9 GKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEID 56
Query: 70 KKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQ 129
+ + + + + S+ + E+ ++S+ TA ++ L +EG+ + ++AK L Q
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 130 YELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEA 189
YE F M ES+ +MY R +V+ L+ L +Y ++ K+LR+LP ++ VT + +
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTMLINS 176
Query: 190 KDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPD 249
D++ ++ L+ + ++M ++ KK A PSK K E + +S
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEIEEASPSK----KCIALQAEVEDQSKSKV 227
Query: 250 GDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQK-----GCFNCKKPGHF 304
+ +ED +M +L+ + L ++K+ N + R K CF C + GHF
Sbjct: 228 NEVNEDLEEEMVLLARRFNDLLGRRKERGRGSNSNRRKNRRPNKTLSNLRCFECGEKGHF 287
Query: 305 IADCPDLQKEKSKSRPKKPSFSSSKFRKQIKK------SLMATW---EDLDSESGSDKEE 355
+ CP + KS KK K K++KK + + W E+ + SGS++E
Sbjct: 288 ASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEG 345
Query: 356 ADDDAK-----------------AAMRLVATVSSEAVSESESDSEDENEVYSKIPRQELI 398
DD + A + L+A SS+ S S+S+S+D+ + + EL+
Sbjct: 346 GDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDELV 402
Query: 399 DSLETLIT 406
E L T
Sbjct: 403 SMFEELHT 410
Score = 43.1 bits (100), Expect = 0.081
Identities = 78/357 (21%), Positives = 141/357 (38%), Gaps = 67/357 (18%)
Query: 1 DTAERKSDSGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAI 60
+ E+ + K P + D ++ S K+ Y + L +E I E + + D +EE +A
Sbjct: 280 ECGEKGHFASKCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKI-EAFIGEWDSNEESSAS 338
Query: 61 DRKIHTPAQKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVRE 120
+ KK K+ + + P ++FA LC +GS KV
Sbjct: 339 SGSEEEGGDDASSKKK-KMAVVAIKEAP--------------SLFAPLCLMAKGSSKVTS 383
Query: 121 AKALMLVHQYELFKMKDDESIEEMYSRFQTL-------VSGLQILKKSYVTSDLVSKILR 173
+ E DD S +E+ S F+ L + + LKK + + +++ + L+
Sbjct: 384 ------LSDSESDDDCDDVSYDELVSMFEELHTYSEKEIVKFKALKKDHASLEVLYEELK 437
Query: 174 SLPSRWRPKVTAIEEAKDLNTLSVE------DLVSSLKVHEMSLNEHESSKKSKSIA--- 224
+ R ++EA D N LS D+ S + + S H + S SI+
Sbjct: 438 TTHERLTISHEKLKEAHD-NLLSTTQHGAHIDVDISCDLLDDSATCHIAHVASSSISTSC 496
Query: 225 -----LPSKGKSSKS-------SKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLAR 272
+PS SS S S + +E +E+ + + K N L+ +
Sbjct: 497 DNLMDMPSPCSSSSSCVSICDASLVVENNELKEQVSKLNKSLERCFKG---KNTLDKILS 553
Query: 273 KQKKFLSK-------RNGYK------NWKREDQKGCFNCKKPGHFIADCPDLQKEKS 316
+Q+ L+K + G K + + + K C C++ GH ++DCP + K+
Sbjct: 554 EQRCILNKEGLGFIPKKGKKPSHHATRFVKRNGKYCSKCREVGHLVSDCPGSKPPKT 610
>gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530636|ref|NP_919620.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042890|gb|AAM08718.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 1627
Score = 130 bits (327), Expect = 4e-28
Identities = 107/426 (25%), Positives = 193/426 (45%), Gaps = 57/426 (13%)
Query: 10 GKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQ 69
GKAP FNG +S WK M +++ + +W I++ G AI T
Sbjct: 9 GKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEID 56
Query: 70 KKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQ 129
+ + + + S + E+ ++S+ TA ++ L +EG+ + ++AK L Q
Sbjct: 57 HCNLQLNAQAMNALFNSFSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 130 YELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEA 189
YE F M ES+ +MY R +V+ L+ L +Y ++ K+LR+LP ++ VT + +
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRALPKKYETLVTMLINS 176
Query: 190 KDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPD 249
D++ ++ L+ + ++M ++ KK A PSK K E + +S
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSK----KCIALQAEVEDKGKSKV 227
Query: 250 GDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQK-----GCFNCKKPGHF 304
++++D ++A+L+ + L ++K+ + N + R K CF C + GHF
Sbjct: 228 NEANDDLKEEIALLARRFNDLLGRRKERVRGSNSNRRRNRRPNKTLSNLRCFECGEKGHF 287
Query: 305 IADCPDLQKEKSKSRPKKPSFSSSKFRKQIKK------SLMATW---EDLDSESGSDKEE 355
+ CP + KS KK K K++KK + + W E+ + SGS++E
Sbjct: 288 ASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEG 345
Query: 356 ADDDAK-----------------AAMRLVATVSSEAVSESESDSEDENEVYSKIPRQELI 398
DD + A + L+A SS+ S S+S+S+D+ + + EL+
Sbjct: 346 GDDASSKKKKMAVVVIKEAPTLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDELV 402
Query: 399 DSLETL 404
E L
Sbjct: 403 SMFEEL 408
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 130 bits (327), Expect = 4e-28
Identities = 106/426 (24%), Positives = 199/426 (45%), Gaps = 59/426 (13%)
Query: 10 GKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQ 69
GKAP FNG +S WK M +++ + +W I++ G AI T
Sbjct: 9 GKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEID 56
Query: 70 KKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQ 129
+ + + + + S+ + E+ ++S+ TA ++ L +EG+ + ++AK L Q
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQ 116
Query: 130 YELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEA 189
YE F M ES+ +MY R +V+ L+ L +Y ++ K+LR+LP ++ VT + +
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTMLINS 176
Query: 190 KDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPD 249
D++ ++ L+ + ++M ++ KK A PSK + +E E++
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSKKCIALQ------AEVEDKGKV 225
Query: 250 GDSDEDHSVKMAMLSNKL-EYLARKQKKFLSKRNGYKNWKREDQK----GCFNCKKPGHF 304
D +++ ++A+L+ + ++L R++++ + + KR ++ CF C + GHF
Sbjct: 226 NDVNKNLEEEIALLARRFNDFLGRRKERGKGSNSNRRRNKRPNKTLSNLRCFECGEKGHF 285
Query: 305 IADCPDLQKEKSKSRPKKPSFSSSKFRKQIKK------SLMATW---EDLDSESGSDKEE 355
+ CP + KS KK K K++KK + + W E+ + SGS +E+
Sbjct: 286 ASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEED 343
Query: 356 ADDDAK-----------------AAMRLVATVSSEAVSESESDSEDENEVYSKIPRQELI 398
DD + A + L+A SS+ S S+S+S+D+ + I EL+
Sbjct: 344 GDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DISYDELV 400
Query: 399 DSLETL 404
E L
Sbjct: 401 SMFEEL 406
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 129 bits (325), Expect = 7e-28
Identities = 106/405 (26%), Positives = 184/405 (45%), Gaps = 45/405 (11%)
Query: 18 DPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----KIHTPAQKKT 72
D + +WK M +++ LD W + G + LD EG D + T + +
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYEL 132
+ K + + + + ++ + AK L + +EG+ KV+ ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEAKDL 192
KMK++E I + + + + L + LV KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ + KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DEDHSVKMAMLSNK----LEYLARKQKKFLSK-----RNGYKNWKREDQK-------GCF 296
DE + + +L + L + ++QK + R G K KR D K C
Sbjct: 244 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCH 303
Query: 297 NCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKK---SLMATWEDLDSESGSDK 353
C+ GH IA+CP K+ K S + S+ + +L+ +E + S +D
Sbjct: 304 GCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALIGIFETAEDSSDTDS 363
Query: 354 EEADDDAKAAMRLVATVSSEAVSESE-------SDSEDENEVYSK 391
E D+ A+ R + + SE + + E +D E E E + +
Sbjct: 364 EITFDELAASYRKLC-IKSEKILQQEAQLKKVIADLEAEKEAHKE 407
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 129 bits (324), Expect = 9e-28
Identities = 106/405 (26%), Positives = 183/405 (45%), Gaps = 45/405 (11%)
Query: 18 DPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----KIHTPAQKKT 72
D + +WK M +++ LD W + G + LD EG D + T + +
Sbjct: 17 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYEL 132
+ K + + + + ++ + AK + L +EG+ KV+ ++ +L ++E
Sbjct: 77 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 136
Query: 133 FKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEAKDL 192
KMK++E I + + + + L + LV KILRSLP R+ KVTAIEEA+D+
Sbjct: 137 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196
Query: 193 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDS 252
+ V++L+ SL+ E+ L++ + KKSK++A S E EE+ D D+
Sbjct: 197 CNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEYDLDT 243
Query: 253 DEDHSVKMAMLSNK----LEYLARKQKKFLSK-----RNGYKNWKREDQK-------GCF 296
DE + + +L + L + ++QK + R G K KR D K C
Sbjct: 244 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCH 303
Query: 297 NCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKK---SLMATWEDLDSESGSDK 353
C+ GH IA+CP K+ K S + S+ + +L +E + S +D
Sbjct: 304 GCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALTGIFETAEDSSDTDS 363
Query: 354 EEADDDAKAAMRLVATVSSEAVSESE-------SDSEDENEVYSK 391
E D+ A+ R + + SE + + E +D E E E + +
Sbjct: 364 EITFDELAASYRKLC-IKSEKILQQEAQLKKVIADLEAEKEAHEE 407
>gb|AAX92911.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1323
Score = 129 bits (323), Expect = 1e-27
Identities = 102/408 (25%), Positives = 190/408 (46%), Gaps = 49/408 (12%)
Query: 18 DPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKTYKKHH 77
D +F W + M SYIM D ++W + I I+T A+K +++
Sbjct: 15 DGTDFFHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEAINTAAEKTAFEQIC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYELFKMKD 137
K R I+++ I R+ Y +++ TA ++ +L ++G+ ++E + +Y F+MK
Sbjct: 65 KARNILLSGISRSGYDRVAHLQTAHEIWVALSNFHQGTNNIKELHRDLFKTEYIKFEMKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRFVDSSYDANYPESEISRHFLNGLDMSIWEMKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSI-----ALPSKGKSSKSSKAYKASESEEES 247
+TL+++ L + LK HEM++ ++ KS ++ +L SSK S + + ++
Sbjct: 185 STLTLDSLYTKLKTHEMNVLSRKADSKSSALVSSSSSLDVDASSSKPSFIVVFNATSDDQ 244
Query: 248 PDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIAD 307
+ +ED LA + N +N KR CF C H +
Sbjct: 245 LEQIEEED--------------LALDANRIARAMNNARNRKRGGPNRCFECGSIDHLRSH 290
Query: 308 CPDLQK--------EKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 359
CP L + EK+ + K S + KF++ ++++ + + S D E DDD
Sbjct: 291 CPKLGRGKRKDKDGEKTNNNKLKGSSQARKFKENLRRAFDQVYAVFEPSSDVDGESGDDD 350
Query: 360 AKAAMRLVATVSSEAVSESESDSEDE--NEVYSKIPRQELIDSLETLI 405
+ ++ V A ES + ED ++Y K ++ +I+SL++ I
Sbjct: 351 KG---KNISGVCFMARGESNIEYEDHECEKMYRK--QEFIIESLKSEI 393
>gb|AAX96502.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 655
Score = 129 bits (323), Expect = 1e-27
Identities = 101/389 (25%), Positives = 185/389 (46%), Gaps = 46/389 (11%)
Query: 18 DPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKTYKKHH 77
D +FS W + M SYIM D ++W + I +I+T A K ++++
Sbjct: 13 DGTDFSHWCSRMQSYIMAKDYDIWRKVSHPY----------VIPEEINTTALKLEFEQNC 62
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYELFKMKD 137
K R I+++ I R++Y +++ A ++ +L ++G+ ++E + + +Y F+MK
Sbjct: 63 KARNILLSGISRSDYDRVAHLQAAHEIWIALSNFHQGTYNIKELRRGLFKKEYIKFEMKP 122
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSL-----PSRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY + S+I R S W KVT+I+E+ ++
Sbjct: 123 GEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTSIQESVNM 182
Query: 193 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKG-----KSSKSSKAYKASESEEES 247
+TL+++ L + LK HEM++ + KS ++ S SSKSS + + ++
Sbjct: 183 STLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSSSSLDVDTSSSKSSILTLFNATSDDQ 242
Query: 248 PDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIAD 307
+ ED +A+++N+ +AR ++ G N CF C H +
Sbjct: 243 LEQFEKED----LALVANR---IARAMNNASFRKRGGPN-------RCFECGSIDHLRSH 288
Query: 308 CPDLQK--------EKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 359
CP L + EK+ K +F K ++ +KK+ + + S D + DDD
Sbjct: 289 CPKLGRGKREDKDGEKTNDNKPKGTFKGRKIKENLKKAFDQVYAAFEPLSDVDGDSGDDD 348
Query: 360 AKAAMRLVATVSSEAVSESESDSEDENEV 388
+ + V A ES+S+ ED NEV
Sbjct: 349 KG---KNIFGVRFMARGESDSECED-NEV 373
>gb|AAP52474.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531770|ref|NP_920187.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657016|gb|AAL78103.1| Putative polyprotein [Oryza
sativa]
Length = 669
Score = 128 bits (322), Expect = 1e-27
Identities = 108/412 (26%), Positives = 190/412 (45%), Gaps = 62/412 (15%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
S K FNG +FS W + M SYIM D ++W + I I+T A
Sbjct: 8 STKPHVFNGT--DFSHWCSRMQSYIMAEDYDIWRKVSHAY----------VIPEVINTAA 55
Query: 69 QKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVH 128
+K ++++ K R I+++ I R++Y ++ TA ++ +L ++G+ ++E + +
Sbjct: 56 EKTAFEQNCKARNILLSGISRSDYDRVPHLETAHEIWNALKNFHQGTNNIKELRRDLFKK 115
Query: 129 QYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSL-----PSRWRPKV 183
+Y F+MK E++++ SRF ++S L+ + SY + S+I R S W V
Sbjct: 116 EYIKFEMKYREALDDYLSRFNKILSDLRSVDSSYDVNYPQSEISRHFLNGLDMSIWEMNV 175
Query: 184 TAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASES 243
T+I+E+ +++TL+++ L + LK HEM++ + KS ++ SS SS AS S
Sbjct: 176 TSIQESVNMSTLTLDSLYTKLKTHEMNIRSRKVDSKSSALV------SSSSSLVVDASSS 229
Query: 244 E-------EESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCF 296
+ D ++ +A+++N+ +AR N +N KR CF
Sbjct: 230 MPSFLAAFNATSDDQLEQIEEEDLALVANR---IARAM-------NNARNRKRGGPNRCF 279
Query: 297 NCKKPGHFIADCPDL------QKEKSKSRPKKPSFSSSKFRKQIKK---------SLMAT 341
C H + CP L K+ K+ KP+++ SK Q +K + A
Sbjct: 280 ECGSIDHLRSHCPKLGRGKREDKDGEKTNNNKPNYNKSKGSNQGRKMENLRKAFQQVCAA 339
Query: 342 WE---DLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESES----DSEDEN 386
+E D+D ESG + + A+ R+V S + +S D + EN
Sbjct: 340 FEPLSDVDGESGDEDKGKKSPMFASWRVVNLTQSMKIMRLKSLIPNDDDCEN 391
>emb|CAI44607.1| P0650D04.11 [Oryza sativa (japonica cultivar-group)]
Length = 347
Score = 128 bits (321), Expect = 2e-27
Identities = 96/324 (29%), Positives = 158/324 (48%), Gaps = 23/324 (7%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
SGKAP FNG ++++ WK M ++ ++ +W I+E G + ++ T
Sbjct: 33 SGKAPYFNG--KDYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDP---------TKE 81
Query: 69 QKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVH 128
+ K+ + I++++ R+E+ ++ +AK ++ +L +EG+ VRE+K +L
Sbjct: 82 DNENEHKNAQAANAILSALSRSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESKVEILKG 141
Query: 129 QYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKVTAIE 187
Q+E F M D E +MY R +V+ ++ L +T + +V K++R++ R VT I
Sbjct: 142 QFERFVMLDGEIPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIR 201
Query: 188 EAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEES 247
E D TL+ DL+ + H+M + +S + I S K A KA E EEE+
Sbjct: 202 ERPDYKTLTPYDLLGRILAHDMLV--QDSKDVIQYINQSSTASIKKEDLALKAEEEEEEN 259
Query: 248 PDGDSD-EDHSVKMAMLSNKLEYLARKQ---KKFLSKRNGYKNWKREDQKGCFNCKKPGH 303
S E +MA+ K R+ K SK K+ R + C+ CK+PGH
Sbjct: 260 RKSKSKVEIDDEEMALFVKKFGKFMRQSGFFKGSSSKHYSNKSSGRHSARVCYVCKEPGH 319
Query: 304 FIADCPDLQ-----KEKSKSRPKK 322
FIA+CP L+ KE K KK
Sbjct: 320 FIAECPHLKDGSHLKEDKKKGEKK 343
>emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar-group)]
gi|50923981|ref|XP_472351.1| OSJNBb0014D23.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1475
Score = 128 bits (321), Expect = 2e-27
Identities = 106/426 (24%), Positives = 189/426 (43%), Gaps = 57/426 (13%)
Query: 10 GKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQ 69
GKAP FNG +S WK M +++ + +W I++ G AI T
Sbjct: 9 GKAPMFNGT--NYSTWKIKMSTHLKAMSFYIWSIVDVGF----------AITGTPLTEID 56
Query: 70 KKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQ 129
+ + + + + S+ + E+ ++S+ TA ++ L +EG+ + ++AK L Q
Sbjct: 57 HRNLQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQ 116
Query: 130 YELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEA 189
YE F M ES+ +MY R +V+ L+ L +Y ++ K+LR+L ++ VT + +
Sbjct: 117 YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALSEKYETLVTMLINS 176
Query: 190 KDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPD 249
D++ ++ L+ + ++M ++ KK A PSK K E + +S
Sbjct: 177 -DMSRMTPASLLGKINTNDM----YKLKKKEMKEASPSK----KCIALQAEVEDKSKSKV 227
Query: 250 GDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQK-----GCFNCKKPGHF 304
+ +ED +M +L+ K L ++K+ N + R K CF C + GHF
Sbjct: 228 NEVNEDLEEEMVLLARKFNDLLGRRKERGRGSNSNRRRNRRPNKTLSNLRCFECGEKGHF 287
Query: 305 IADCPDLQKEKSKSRPKKPSFSSSKFRKQIKK------SLMATWEDLDSESGSD--KEEA 356
+ CP + KS KK K K++KK + + W+ + S S +E+
Sbjct: 288 ASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGFEEQC 345
Query: 357 DDDAKAAMRLVATV------------------SSEAVSESESDSEDENEVYSKIPRQELI 398
DDA + + +A V SS+ S S+S+S+D+ + + EL+
Sbjct: 346 SDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDELV 402
Query: 399 DSLETL 404
E L
Sbjct: 403 SMFEEL 408
>emb|CAD41679.1| OSJNBa0019K04.26 [Oryza sativa (japonica cultivar-group)]
gi|50928129|ref|XP_473592.1| OSJNBa0019K04.26 [Oryza
sativa (japonica cultivar-group)]
Length = 559
Score = 127 bits (318), Expect = 4e-27
Identities = 104/392 (26%), Positives = 183/392 (46%), Gaps = 46/392 (11%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
SG+AP F+G ++ WK M +++ L +W ++ G+D + D E T
Sbjct: 48 SGRAPHFDGT--HYAAWKHKMKLHLISLHPSIWKVVCTGIDVPNDDME--------LTSE 97
Query: 69 QKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVH 128
Q++ ++ + I++++ E+ K AK ++ +L +EGS VRE K +L
Sbjct: 98 QEQLIHRNAQASNTILSALSPKEFNKFDGLEEAKEIWDTLQLAHEGSPAVREDKIELLEG 157
Query: 129 QYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSK-ILRSLPSRWRPKVTAIE 187
+ F M D E+ +EMY R LV+ ++ +T+ V K +LR+ R V+ I
Sbjct: 158 RLGRFVMDDKETPQEMYDRMMILVNKIKGFGSEDMTNHFVVKRLLRAFGPRNPTLVSMIR 217
Query: 188 EAKDLNTLSVEDLVSSLKVHEMSLNE-HESSKKSKSIALPSKGKSSKSSKAYKASESEEE 246
E KD L+ D++ + HEM E E + K+ A+ + + ++K + S EE
Sbjct: 218 ERKDFKRLTPSDILGRIVSHEMQEEEAREVRQMVKNAAMIKNQEVALNAKQEEESSCEE- 276
Query: 247 SPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIA 306
K++ L+ ++ + +++ K KR+ ++ CFNC + GHFIA
Sbjct: 277 -------------------KIQALSSQEWLWQGRKDDDKG-KRQSERACFNCGEYGHFIA 316
Query: 307 DCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDK-EEADDDAKAAMR 365
DCP + K+K KKP + +K ++ W D E+ DK + D
Sbjct: 317 DCPKTNEAKAKGDKKKPERA-----HVVKAHMVEVWYSEDEEASEDKPKPKPKDKIEGEG 371
Query: 366 LVATVSSEAVSESE-------SDSEDENEVYS 390
+ATV+ ++ S S+ SD +D++ YS
Sbjct: 372 GIATVAFKSSSSSKECLFNNLSDDDDDSYHYS 403
>emb|CAE02851.4| OSJNBa0014F04.17 [Oryza sativa (japonica cultivar-group)]
Length = 491
Score = 127 bits (318), Expect = 4e-27
Identities = 107/383 (27%), Positives = 169/383 (43%), Gaps = 20/383 (5%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
SGKA FNG ++ WK M ++ ++ +W I+E G + ++ D H A
Sbjct: 33 SGKASYFNGT--DYVAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDDENEHKNA 90
Query: 69 QKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVH 128
Q I++++ +E+ + +AK ++ +L +EG+ VRE+K +L
Sbjct: 91 QAAN---------AILSALSESEFNCVDGIESAKVIWDTLQNLHEGTNSVRESKVEILKG 141
Query: 129 QYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKVTAIE 187
Q+E F M D ES +MY R +V+ ++ L +T + +V K++R++ R VT I
Sbjct: 142 QFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIR 201
Query: 188 EAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEES 247
E D TL+ DL+ + H+M + ES + I S K A KA + EEE+
Sbjct: 202 ERPDYKTLTPHDLLGHILAHDMLV--QESKDVIQYINQSSTTSIKKEDLALKAKKEEEEN 259
Query: 248 PDGDSD-EDHSVKMAMLSNKLEYLARKQKKFL-SKRNGYKNWK--REDQKGCFNCKKPGH 303
S E +MA+ K R+ F N Y N R + C+ CK+PGH
Sbjct: 260 RKSKSKAEIDDEEMALFVKKFSKFMRRSGFFKGGSSNHYSNKSSGRHSTRVCYVCKEPGH 319
Query: 304 FIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATW--EDLDSESGSDKEEADDDAK 361
FI DCP L+ KK + +++ K S + L GSD + + D +
Sbjct: 320 FITDCPHLKDGSHIKEDKKKGEKKDEKKEKHKHSKREHYGQAHLGMIFGSDSKLSSSDEE 379
Query: 362 AAMRLVATVSSEAVSESESDSED 384
A SS S ED
Sbjct: 380 GAATFTVKPSSPPRLFDHSSDED 402
>gb|AAP51904.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530630|ref|NP_919617.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042887|gb|AAM08715.1| Putative
copia-type pol polyprotein [Oryza sativa]
gi|16924049|gb|AAL31661.1| Putative copia-type pol
polyprotein [Oryza sativa]
Length = 998
Score = 126 bits (317), Expect = 6e-27
Identities = 101/389 (25%), Positives = 188/389 (47%), Gaps = 46/389 (11%)
Query: 18 DPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPAQKKTYKKHH 77
D +FS W + M SYIM D ++W + I I+T A K ++++
Sbjct: 15 DGTDFSHWCSRMQSYIMAEDYDIWRKVSHPY----------VIPEVINTAAAKTKFEQNC 64
Query: 78 KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYELFKMKD 137
K R I+++ I R++Y +++ TA ++ +L ++G+ ++E + + +Y F++K
Sbjct: 65 KARNILLSGISRSDYDRVAHFQTAHEIWNALSNFHQGTNNIKELRRAIFKKEYIKFEIKP 124
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVT----SDLVSKILRSLP-SRWRPKVTAIEEAKDL 192
E++++ SRF ++S L+ + SY S++ L L S W KVT+I+E+ ++
Sbjct: 125 GEALDDYLSRFNKILSDLRSVDFSYYANYPQSEISHHFLNGLDMSIWEIKVTSIQESVNM 184
Query: 193 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSI-----ALPSKGKSSKSSKAYKASESEEES 247
+TL+++ L + LK HEM++ + KS ++ +L SSKSS + + ++
Sbjct: 185 STLTLDSLYTKLKTHEMNVLSRKVDSKSSALVSSSSSLDVDASSSKSSFLAIFNATSDDQ 244
Query: 248 PDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIAD 307
+ +ED +A+++N+ +AR N +N KR CF C H
Sbjct: 245 LEQIEEED----LALVANR---IARAM-------NNARNRKRCGPNRCFECGSIDHLRLH 290
Query: 308 CPDLQK--------EKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD 359
CP L + EK+ K +F K ++ +KK+ + + S D + D+
Sbjct: 291 CPKLGRGKREDKDGEKTNDNKPKGTFKGRKIKENLKKAFDQVYVAFEPLSDVDGDSGDE- 349
Query: 360 AKAAMRLVATVSSEAVSESESDSEDENEV 388
A + ++ V A ES+S+ E+ NEV
Sbjct: 350 --AKGKNISGVCFMARGESDSECEN-NEV 375
>ref|XP_474806.1| OSJNBa0014F04.17 [Oryza sativa (japonica cultivar-group)]
Length = 491
Score = 126 bits (317), Expect = 6e-27
Identities = 107/383 (27%), Positives = 168/383 (42%), Gaps = 20/383 (5%)
Query: 9 SGKAPKFNGDPEEFSWWKTNMYSYIMGLDEELWDILEDGVDDLDLDEEGAAIDRKIHTPA 68
SGKA FNG ++ WK M ++ ++ +W I+E G + ++ D H A
Sbjct: 33 SGKASYFNGT--DYVAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDDENEHKNA 90
Query: 69 QKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVH 128
Q I++++ +E+ + +AK ++ +L +EG+ VRE+K +L
Sbjct: 91 QAAN---------AILSALSESEFNCVDGIESAKVIWDTLQNLHEGTNSVRESKVEILKG 141
Query: 129 QYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSD-LVSKILRSLPSRWRPKVTAIE 187
Q+E F M D ES +MY R +V+ ++ L +T + +V K++R++ R VT I
Sbjct: 142 QFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIR 201
Query: 188 EAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEES 247
E D TL+ DL+ + H+M + ES + I S K A KA + EEE
Sbjct: 202 ERPDYKTLTPHDLLGHILAHDMLV--QESKDVIQYINQSSTTSIKKEDLALKAKKEEEEX 259
Query: 248 PDGDSD-EDHSVKMAMLSNKLEYLARKQKKFL-SKRNGYKNWK--REDQKGCFNCKKPGH 303
S E +MA+ K R+ F N Y N R + C+ CK+PGH
Sbjct: 260 RKSKSKAEIDDEEMALFVKKFSKFMRRSGFFKGGSSNHYSNKSSGRHSTRVCYVCKEPGH 319
Query: 304 FIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATW--EDLDSESGSDKEEADDDAK 361
FI DCP L+ KK + +++ K S + L GSD + + D +
Sbjct: 320 FITDCPHLKDGSHIKEDKKKGEKKDEKKEKHKHSKREHYGQAHLGMIFGSDSKLSSSDEE 379
Query: 362 AAMRLVATVSSEAVSESESDSED 384
A SS S ED
Sbjct: 380 GAATFTVKPSSPPRLFDHSSDED 402
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.361 0.158 0.581
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,221,450,652
Number of Sequences: 2540612
Number of extensions: 80697828
Number of successful extensions: 690665
Number of sequences better than 10.0: 1671
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 1392
Number of HSP's that attempted gapping in prelim test: 677037
Number of HSP's gapped (non-prelim): 8706
length of query: 1684
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1542
effective length of database: 502,593,490
effective search space: 774999161580
effective search space used: 774999161580
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 82 (36.2 bits)
Medicago: description of AC146649.9