BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146588.13 - phase: 0
(107 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK93691.1| unknown protein [Arabidopsis thaliana] gi|1343057... 171 4e-42
gb|AAB61100.1| ESTs gb|R30459,gb|N38441 come from this gene. [Ar... 165 3e-40
ref|XP_482474.1| unknown protein [Oryza sativa (japonica cultiva... 153 1e-36
ref|XP_450882.1| unknown protein [Oryza sativa (japonica cultiva... 150 7e-36
ref|NP_915761.1| P0684C02.5 [Oryza sativa (japonica cultivar-gro... 138 3e-32
dbj|BAD53001.1| unknown protein [Oryza sativa (japonica cultivar... 138 3e-32
emb|CAB79557.1| putative protein [Arabidopsis thaliana] gi|23505... 128 3e-29
gb|AAP68255.1| At5g54870 [Arabidopsis thaliana] gi|14596223|gb|A... 124 4e-28
dbj|BAB08766.1| unnamed protein product [Arabidopsis thaliana] g... 124 4e-28
gb|AAL09800.1| AT4g27020/F10M23_360 [Arabidopsis thaliana] 55 5e-07
gb|AAM37418.1| conserved hypothetical protein [Xanthomonas axono... 33 1.3
dbj|BAB69717.1| hypothetical protein [Macaca fascicularis] 32 3.8
gb|AAV45955.1| A/G-specific adenine glycosylase [Haloarcula mari... 31 6.4
ref|NP_870991.1| gamma isoform of regulatory subunit B55, protei... 31 6.4
ref|NP_280331.1| A/G specific adenine glycosylase, repair protei... 31 8.4
>gb|AAK93691.1| unknown protein [Arabidopsis thaliana] gi|13430576|gb|AAK25910.1|
unknown protein [Arabidopsis thaliana]
gi|18409461|ref|NP_564985.1| expressed protein
[Arabidopsis thaliana]
Length = 523
Score = 171 bits (433), Expect = 4e-42
Identities = 85/112 (75%), Positives = 92/112 (81%), Gaps = 6/112 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
MPSGMLGTLLS ID +PLFS+TAWG NL FL KHMGAT RSQPWR+ +P DVHSG
Sbjct: 163 MPSGMLGTLLSLIDVLPLFSNTAWGQNANLAFLTKHMGATFEKRSQPWRSMINPEDVHSG 222
Query: 58 DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
DFLAVSKI GRWGGFETLEK VT A H AVCLKD++G+LWVGESGHENEK
Sbjct: 223 DFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDDLGNLWVGESGHENEK 274
>gb|AAB61100.1| ESTs gb|R30459,gb|N38441 come from this gene. [Arabidopsis
thaliana] gi|25333937|pir||D96724 hypothetical protein
F20P5.12 [imported] - Arabidopsis thaliana
Length = 551
Score = 165 bits (417), Expect = 3e-40
Identities = 82/109 (75%), Positives = 89/109 (81%), Gaps = 6/109 (5%)
Query: 4 GMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSGDFL 60
GMLGTLLS ID +PLFS+TAWG NL FL KHMGAT RSQPWR+ +P DVHSGDFL
Sbjct: 194 GMLGTLLSLIDVLPLFSNTAWGQNANLAFLTKHMGATFEKRSQPWRSMINPEDVHSGDFL 253
Query: 61 AVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
AVSKI GRWGGFETLEK VT A H AVCLKD++G+LWVGESGHENEK
Sbjct: 254 AVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDDLGNLWVGESGHENEK 302
>ref|XP_482474.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|37572928|dbj|BAC98558.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|37806295|dbj|BAC99810.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 547
Score = 153 bits (386), Expect = 1e-36
Identities = 77/112 (68%), Positives = 86/112 (76%), Gaps = 6/112 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
MPSGMLGTLLS ID +PLFS+T WG NL FL KHMGA+ R+QPW A DVHSG
Sbjct: 187 MPSGMLGTLLSLIDVIPLFSNTIWGQDANLAFLQKHMGASFEKRTQPWSANIRKEDVHSG 246
Query: 58 DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
DFLA+SKI GRWGGF+TLEK VT A H AVCLKDE G+LWV ESG+EN+K
Sbjct: 247 DFLALSKIRGRWGGFQTLEKWVTGAFAGHTAVCLKDENGTLWVAESGYENKK 298
>ref|XP_450882.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|49389223|dbj|BAD26533.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 546
Score = 150 bits (379), Expect = 7e-36
Identities = 77/112 (68%), Positives = 83/112 (73%), Gaps = 6/112 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
MPSGMLGTLLS ID +PLFS+T WG NL FL KHMGA+ RSQPW T D+HSG
Sbjct: 186 MPSGMLGTLLSLIDVLPLFSNTGWGQHSNLAFLEKHMGASFEKRSQPWVTTIRKEDIHSG 245
Query: 58 DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
DFLA+SKI GRWG FETLEK VT A H AVCLKDE G +WV ESG ENEK
Sbjct: 246 DFLALSKIRGRWGAFETLEKWVTGAFAGHTAVCLKDEKGEVWVAESGFENEK 297
>ref|NP_915761.1| P0684C02.5 [Oryza sativa (japonica cultivar-group)]
gi|20146267|dbj|BAB89049.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 545
Score = 138 bits (348), Expect = 3e-32
Identities = 69/112 (61%), Positives = 80/112 (70%), Gaps = 6/112 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
MPSG +GTL + D PLF++T WG NL FL KHMGAT R +PW + + D+HSG
Sbjct: 183 MPSGTIGTLRALWDVFPLFTNTQWGENSNLAFLKKHMGATFEERPKPWVSELNVDDIHSG 242
Query: 58 DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
DFL +SKI GRWGGFETLEK VT A H AVCL+D G LWVGESGHENE+
Sbjct: 243 DFLVLSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENEQ 294
>dbj|BAD53001.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 539
Score = 138 bits (348), Expect = 3e-32
Identities = 69/112 (61%), Positives = 80/112 (70%), Gaps = 6/112 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
MPSG +GTL + D PLF++T WG NL FL KHMGAT R +PW + + D+HSG
Sbjct: 177 MPSGTIGTLRALWDVFPLFTNTQWGENSNLAFLKKHMGATFEERPKPWVSELNVDDIHSG 236
Query: 58 DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
DFL +SKI GRWGGFETLEK VT A H AVCL+D G LWVGESGHENE+
Sbjct: 237 DFLVLSKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSEGKLWVGESGHENEQ 288
>emb|CAB79557.1| putative protein [Arabidopsis thaliana] gi|23505979|gb|AAN28849.1|
At4g27020/F10M23_360 [Arabidopsis thaliana]
gi|4455225|emb|CAB36548.1| putative protein [Arabidopsis
thaliana] gi|18650639|gb|AAL75889.1|
AT4g27020/F10M23_360 [Arabidopsis thaliana]
gi|15236947|ref|NP_194432.1| expressed protein
[Arabidopsis thaliana] gi|7452424|pir||T04825
hypothetical protein F10M23.360 - Arabidopsis thaliana
Length = 523
Score = 128 bits (322), Expect = 3e-29
Identities = 64/112 (57%), Positives = 76/112 (67%), Gaps = 6/112 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
M +GMLGTL + D PLF++T WG N+ FL HMGA R +PW ++HSG
Sbjct: 161 MEAGMLGTLRALWDVFPLFTNTGWGENSNIAFLKNHMGANFYPRPKPWVTNITTDEIHSG 220
Query: 58 DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
D LA+SKI GRWGGFETLEK V+ A H AVCL+D G LWVGESG+ENEK
Sbjct: 221 DLLAISKIRGRWGGFETLEKWVSGAYAGHTAVCLRDSEGKLWVGESGNENEK 272
>gb|AAP68255.1| At5g54870 [Arabidopsis thaliana] gi|14596223|gb|AAK68839.1| Unknown
protein [Arabidopsis thaliana]
Length = 318
Score = 124 bits (312), Expect = 4e-28
Identities = 64/112 (57%), Positives = 75/112 (66%), Gaps = 6/112 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
M +GMLGTL + D PLFS+T WG NL FL KHMGA R +PW + SG
Sbjct: 169 MHAGMLGTLQALWDVFPLFSNTGWGESSNLAFLEKHMGANFEPRPEPWVTNVTTDQIQSG 228
Query: 58 DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
D LA+SKI GRWGGFETLEK V+ A H+AV L+D G LWVGESG+EN+K
Sbjct: 229 DLLAISKIRGRWGGFETLEKWVSGAYAGHSAVALRDSEGKLWVGESGNENDK 280
>dbj|BAB08766.1| unnamed protein product [Arabidopsis thaliana]
gi|15239765|ref|NP_200298.1| expressed protein
[Arabidopsis thaliana]
Length = 531
Score = 124 bits (312), Expect = 4e-28
Identities = 64/112 (57%), Positives = 75/112 (66%), Gaps = 6/112 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHSG 57
M +GMLGTL + D PLFS+T WG NL FL KHMGA R +PW + SG
Sbjct: 169 MHAGMLGTLQALWDVFPLFSNTGWGESSNLAFLEKHMGANFEPRPEPWVTNVTTDQIQSG 228
Query: 58 DFLAVSKICGRWGGFETLEKLVT---ADHAAVCLKDEMGSLWVGESGHENEK 106
D LA+SKI GRWGGFETLEK V+ A H+AV L+D G LWVGESG+EN+K
Sbjct: 229 DLLAISKIRGRWGGFETLEKWVSGAYAGHSAVALRDSEGKLWVGESGNENDK 280
>gb|AAL09800.1| AT4g27020/F10M23_360 [Arabidopsis thaliana]
Length = 222
Score = 54.7 bits (130), Expect = 5e-07
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1 MPSGMLGTLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGAT---RSQPWRATTDPADVHS 56
M +GMLGTL + D PLF++T WG N+ FL HMGA R +PW ++HS
Sbjct: 161 MEAGMLGTLRALWDVFPLFTNTGWGENSNIAFLKNHMGANFYPRPKPWVTNITTDEIHS 219
>gb|AAM37418.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306] gi|21243300|ref|NP_642882.1| hypothetical
protein XAC2568 [Xanthomonas axonopodis pv. citri str.
306]
Length = 384
Score = 33.5 bits (75), Expect = 1.3
Identities = 24/86 (27%), Positives = 41/86 (46%), Gaps = 3/86 (3%)
Query: 13 IDAVPLFSDTAW-GHKVNLDFLNKHMGATRSQPWRATTDPADVHSGDFLAVSKICGRWGG 71
+ A+P + D+A ++ F+N + T W P ++ + A ++ RWGG
Sbjct: 159 VTALPYYRDSATLAGRLLAQFVNNNAALTYLG-WLPFAAPLTINGMCYAARTEQLRRWGG 217
Query: 72 FETLEKLVTADHA-AVCLKDEMGSLW 96
F L + +T D A A ++D G LW
Sbjct: 218 FTALLEQLTDDLAFATLVRDRGGRLW 243
>dbj|BAB69717.1| hypothetical protein [Macaca fascicularis]
Length = 447
Score = 32.0 bits (71), Expect = 3.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 28 VNLDFLNKHMGATRSQPWRATTDPADV-------HSGDFLAVSKICGRWGGFETLEKLVT 80
+ L F +KH+ QPW + T PAD+ H+G+ LA GR F+ +
Sbjct: 1 MGLSFFSKHLPIQEGQPWASKT-PADIISTVEFNHTGELLATGDKGGRVVIFQREPESKN 59
Query: 81 ADHA 84
A H+
Sbjct: 60 APHS 63
>gb|AAV45955.1| A/G-specific adenine glycosylase [Haloarcula marismortui ATCC
43049] gi|55377811|ref|YP_135661.1| A/G-specific adenine
glycosylase [Haloarcula marismortui ATCC 43049]
Length = 311
Score = 31.2 bits (69), Expect = 6.4
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 41 RSQPWRATTDPADVHSGDFLA----VSKICGRWGGFETLEKLVTADHAAVCLKDEMGSLW 96
RS PWR TTDP ++ + ++ + ++ W F L++ TA A + ++ W
Sbjct: 34 RSYPWRETTDPYEILVSEVMSQQTQLDRVVDAWEDF--LDRWPTAAALAEADRSDVVGFW 91
Query: 97 VGES-GHEN 104
S G+ N
Sbjct: 92 TSHSLGYNN 100
>ref|NP_870991.1| gamma isoform of regulatory subunit B55, protein phosphatase 2
isoform b [Homo sapiens]
Length = 447
Score = 31.2 bits (69), Expect = 6.4
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 28 VNLDFLNKHMGATRSQPWRATTDPADV-------HSGDFLAVSKICGRWGGFETLEKLVT 80
+ L F +KH+ QPW T PAD+ H+G+ LA GR F+ +
Sbjct: 1 MGLSFFSKHLPIQEGQPWALKT-PADIISTVEFNHTGELLATGDKGGRVVIFQREPESKN 59
Query: 81 ADHA 84
A H+
Sbjct: 60 APHS 63
>ref|NP_280331.1| A/G specific adenine glycosylase, repair protein [Halobacterium sp.
NRC-1] gi|10581009|gb|AAG19811.1| A/G specific adenine
glycosylase, repair protein; MutY [Halobacterium sp.
NRC-1] gi|25410165|pir||G84305 hypothetical protein mutY
[imported] - Halobacterium sp. NRC-1
Length = 312
Score = 30.8 bits (68), Expect = 8.4
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 41 RSQPWRATTDPADVHSGDFLA----VSKICGRWGGFETLEKLVTADHAAVCLKDEMGSLW 96
RS PWR TTDP ++ + ++ +S++ W F L++ T A + ++ W
Sbjct: 34 RSFPWRETTDPYEILVSEVMSQQTQLSRVIDAWRAF--LDRWPTTAALAAADRSDVVGFW 91
Query: 97 VGES-GHEN 104
S G+ N
Sbjct: 92 SAHSLGYNN 100
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,462,165
Number of Sequences: 2540612
Number of extensions: 6635120
Number of successful extensions: 11220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11192
Number of HSP's gapped (non-prelim): 15
length of query: 107
length of database: 863,360,394
effective HSP length: 83
effective length of query: 24
effective length of database: 652,489,598
effective search space: 15659750352
effective search space used: 15659750352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146588.13