BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146588.1 - phase: 0 /pseudo
(191 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR06341.1| putative polyprotein [Oryza sativa (japonica cult... 56 6e-07
gb|AAX62244.1| reverse transcriptase [Nymphaea tetragona] 56 6e-07
gb|AAV32171.1| putative polyprotein [Oryza sativa (japonica cult... 56 6e-07
gb|AAT85771.1| hypothetical protein [Oryza sativa (japonica cult... 56 6e-07
gb|AAT77831.1| putative pol polyprotein [Oryza sativa (japonica ... 56 6e-07
ref|XP_468851.1| putative polyprotein [Oryza sativa (japonica cu... 55 1e-06
gb|AAD22153.1| polyprotein [Sorghum bicolor] 55 1e-06
gb|AAX96700.1| retrotransposon protein, putative, Ty3-gypsy sub-... 55 1e-06
ref|XP_471644.1| OSJNBb0068N06.8 [Oryza sativa (japonica cultiva... 55 1e-06
gb|AAV43999.1| putative polyprotein [Oryza sativa (japonica cult... 55 1e-06
ref|XP_462885.1| putative polyprotein [Oryza sativa (japonica cu... 54 2e-06
gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cul... 54 2e-06
gb|AAP53044.1| putative retroelement [Oryza sativa (japonica cul... 54 2e-06
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 54 2e-06
gb|AAP53015.1| putative polyprotein [Oryza sativa (japonica cult... 54 2e-06
gb|AAP52926.1| putative polyprotein [Oryza sativa (japonica cult... 54 2e-06
gb|AAP52906.1| putative polyprotein [Oryza sativa (japonica cult... 54 2e-06
gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cult... 54 2e-06
gb|AAP52669.1| putative polyprotein [Oryza sativa (japonica cult... 54 2e-06
gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cult... 54 2e-06
>gb|AAR06341.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50901310|ref|XP_463088.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1116
Score = 55.8 bits (133), Expect = 6e-07
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF TQ
Sbjct: 778 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTQ 819
>gb|AAX62244.1| reverse transcriptase [Nymphaea tetragona]
Length = 114
Score = 55.8 bits (133), Expect = 6e-07
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L+GA V SKI+ R YH ++ K ED+PKTAFRT+
Sbjct: 27 RIDDLFDQLSGAKVFSKIDLRPGYHQVKVKKEDIPKTAFRTR 68
>gb|AAV32171.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1310
Score = 55.8 bits (133), Expect = 6e-07
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RSRYH ++ + ED+PKTAF T+
Sbjct: 556 RIDDLFDQLEGATVFSKIDLRSRYHQLRIREEDIPKTAFTTR 597
>gb|AAT85771.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1169
Score = 55.8 bits (133), Expect = 6e-07
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RSRYH ++ + ED+PKTAF T+
Sbjct: 318 RIDDLFDQLKGATVFSKIDLRSRYHQLRIREEDIPKTAFTTR 359
>gb|AAT77831.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 922
Score = 55.8 bits (133), Expect = 6e-07
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RSRYH ++ + ED+PKTAF T+
Sbjct: 222 RIDDLFDQLKGATVFSKIDLRSRYHQLRIREEDIPKTAFTTR 263
>ref|XP_468851.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|40736990|gb|AAR89003.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 934
Score = 55.1 bits (131), Expect = 1e-06
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RSRYH ++ + ED+PKTAF T+
Sbjct: 143 RIDDLFDQLKGAKVFSKIDLRSRYHQLRIREEDIPKTAFTTR 184
>gb|AAD22153.1| polyprotein [Sorghum bicolor]
Length = 1484
Score = 55.1 bits (131), Expect = 1e-06
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GACV SKI+ RS YH ++ + D+PKTAF T+
Sbjct: 632 RIDDLFDQLRGACVFSKIDLRSGYHQLKIRNSDIPKTAFTTR 673
>gb|AAX96700.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1071
Score = 55.1 bits (131), Expect = 1e-06
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA + SKI+ SRYH +Q + ED+PKTAF T+
Sbjct: 649 RIDDLFDQLEGATIFSKIDLHSRYHQLQIREEDIPKTAFMTR 690
>ref|XP_471644.1| OSJNBb0068N06.8 [Oryza sativa (japonica cultivar-group)]
gi|38567989|emb|CAE04032.2| OSJNBb0068N06.8 [Oryza
sativa (japonica cultivar-group)]
Length = 947
Score = 54.7 bits (130), Expect = 1e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ + ED+PKTAF TQ
Sbjct: 476 RIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTQ 517
>gb|AAV43999.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1092
Score = 54.7 bits (130), Expect = 1e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ + ED+PKTAF TQ
Sbjct: 420 RIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTQ 461
>ref|XP_462885.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|14018106|gb|AAK52169.1| putative polyprotein [Oryza
sativa] gi|24796793|gb|AAN64470.1| putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1473
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 765 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 806
>gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533104|ref|NP_920854.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22539088|gb|AAN01260.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1683
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 883 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 924
>gb|AAP53044.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532910|ref|NP_920757.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1094
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 608 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 649
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1679
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 578 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 619
>gb|AAP53015.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532852|ref|NP_920728.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22655733|gb|AAN04150.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16905211|gb|AAL31081.1| putative polyprotein [Oryza
sativa]
Length = 1416
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 575 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 616
>gb|AAP52926.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532674|ref|NP_920639.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22725934|gb|AAN04944.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1078
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 826 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 867
>gb|AAP52906.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532634|ref|NP_920619.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19881555|gb|AAM00956.1| Putative polyprotein [Oryza
sativa]
Length = 1167
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 349 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 390
>gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532218|ref|NP_920411.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225021|gb|AAL86497.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 857 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 898
>gb|AAP52669.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532160|ref|NP_920382.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|23266289|gb|AAN16328.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1263
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 848 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 889
>gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531994|ref|NP_920299.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1715
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 850 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 891
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.365 0.164 0.594
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,113,485
Number of Sequences: 2540612
Number of extensions: 7024366
Number of successful extensions: 29960
Number of sequences better than 10.0: 899
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 28579
Number of HSP's gapped (non-prelim): 1387
length of query: 191
length of database: 863,360,394
effective HSP length: 121
effective length of query: 70
effective length of database: 555,946,342
effective search space: 38916243940
effective search space used: 38916243940
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 71 (32.0 bits)
Medicago: description of AC146588.1