BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146573.8 + phase: 0
(964 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54977.1| putative gag-pol polyprotein [Oryza sativa (japon... 629 e-178
gb|AAC02664.1| polyprotein [Arabidopsis thaliana] 620 e-176
gb|AAC02666.1| polyprotein [Arabidopsis thaliana] 617 e-175
gb|AAC02669.1| polyprotein [Arabidopsis thaliana] 616 e-174
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 613 e-173
emb|CAB46043.1| retrotransposon like protein [Arabidopsis thalia... 611 e-173
emb|CAB77781.1| putative polyprotein of LTR transposon [Arabidop... 610 e-173
dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] 610 e-173
gb|AAK43485.1| polyprotein, putative [Arabidopsis thaliana] 609 e-172
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana] 606 e-171
dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] 604 e-171
dbj|BAB84015.1| polyprotein [Arabidopsis thaliana] gi|14475941|g... 602 e-170
gb|AAK62793.1| polyprotein, putative [Arabidopsis thaliana] 601 e-170
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana] 600 e-170
gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana] 593 e-168
gb|AAP53968.1| putative gag-pol polyprotein [Oryza sativa (japon... 578 e-163
gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein ... 554 e-156
pir||E71436 hypothetical protein - Arabidopsis thaliana 554 e-156
gb|AAC02672.1| polyprotein [Arabidopsis arenosa] gi|7522104|pir|... 548 e-154
ref|XP_507316.1| PREDICTED P0623F08.22 gene product [Oryza sativ... 536 e-150
>gb|AAP54977.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536776|ref|NP_922690.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|14165328|gb|AAK55460.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1031
Score = 629 bits (1622), Expect = e-178
Identities = 360/975 (36%), Positives = 546/975 (55%), Gaps = 78/975 (8%)
Query: 30 DYNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERL 89
+Y W QD+ +L I SS+ ++ + + + AW++++ MF+ K++A +++ L
Sbjct: 78 EYKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAGTINVLLAL 137
Query: 90 TRTSKGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRT--R 147
T T KG S+SEY+ +++++DE+A KP+D+++LV + NGL SEF L R
Sbjct: 138 TTTQKGPMSISEYIAKMRSLADEMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATAR 197
Query: 148 ENAIAFDELHDILVDHETFLQRDQEPTIIPTAQVAYRGKPKYHKNGSFHNHIN------- 200
++ ++ L+ +E + R ++ + +A A RG + + S N
Sbjct: 198 IAPVSISHVYSQLLSYENRI-RIRQAYLTTSANAANRGGGRGGRGSSTGNRGGRRGGFGR 256
Query: 201 -------PSVNNISDSQGQQKQVMCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYT 253
PS + +G + +CQ C K GH A +C+ H Y A
Sbjct: 257 GGRGRGAPSGASQGRGRGNDTRPVCQVCHKRGHVASDCW--HRYDDSYVPDEKLGGAATY 314
Query: 254 PHTDETDWILDSGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVD--------- 304
+ +T+W +D+GAT H+T LD L Y G+D+I G + I HV
Sbjct: 315 AYGVDTNWYVDTGATDHITGQLDKLTTKERYKGTDQIHTASGEGMSIKHVGHAIVPTPSR 374
Query: 305 ----------PKTNKIYTSRHVVFHDN------HFPYPTINQNAHAANL---PINISLIP 345
P+ K S H + DN H Y I A + P L P
Sbjct: 375 PLHLKNVLHVPEAAKNLVSVHKLVADNYAFLEIHGKYFLIKDKATRRTILEGPCRRGLYP 434
Query: 346 PHTILSLNPTIPPPQAPNSLMATTPPTPEAILQEAPLSPSTS---SGNESSPSPSPTNNS 402
LSL + +AT P+ E I Q+ + G + S P
Sbjct: 435 LPARLSLR---------QAFVAT--PSFERISQKCEFRYTGGIWPGGAQQSHQPG----- 478
Query: 403 IALTNPPADSNATNHII---TRSQNNIFKPKKFFYASNHP--LPENLEPSNVRQAMQHPH 457
++ P++S + ++ TR Q+ I K K + + + EP + +A+ +
Sbjct: 479 ---SSAPSESAQLSEVMRPKTRLQSGIRKEKIYTDGTVRYSCFTSSGEPQTLHEALGDKN 535
Query: 458 WRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQ 517
W++A+ E+ AL++N TW VP K +NI+DCKW++++KR DG++D YKARLVAKGF Q
Sbjct: 536 WKEAMDSEYQALMKNKTWHRVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARLVAKGFKQ 595
Query: 518 CPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLK 577
G+D+++TF PVV+ TI+ IL+IA+++GW + QLDV NAFL G L E+V+M QPPG +
Sbjct: 596 RYGIDYEDTFRPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYE 655
Query: 578 DSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFL 637
Q+ YVCKL KA+YGL+QAPRAW+ L T + GF +S+SD SLF Y+ G + L
Sbjct: 656 --QKDGYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVTIFML 713
Query: 638 VYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRD 697
VYVDD+++ + + +++L+ F+LK +G HYFLGIE+ + L+Q K+ D
Sbjct: 714 VYVDDIIVASSSIVATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNDGIVLTQEKYAMD 773
Query: 698 ILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAA--DSTLYRQIIGALQYLNLTRPDLSFAI 755
+L+R +M K TPLS + L+ ++G DST YR ++GALQYL LTRPDLSF++
Sbjct: 774 VLKRVNMSDCKAVNTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSV 833
Query: 756 NKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTS 815
NK+ Q++H T+ H+ KR+LRYLK T+ G+ + K+N+L + ++DADW G +DDR S
Sbjct: 834 NKVCQYLHAATTKHWVAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRRS 893
Query: 816 TSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPP 875
T + ++ G N +SW +RKQ TV+RSSTEAEY+A+A ATAEIMWI LL EL I + K
Sbjct: 894 TGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWIQTLLHELGIQVPKIA 953
Query: 876 LLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPL 935
+ CDN+GA Y+ +NPV H++ KHI +DYHFVRE+V LQV ++STKDQ+AD TK L
Sbjct: 954 KVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKLLQVEYISTKDQVADGFTKTL 1013
Query: 936 PRAKFEELRSKMKVT 950
+ E R+ + +T
Sbjct: 1014 SVRQLEMFRNNLNLT 1028
>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 620 bits (1599), Expect = e-176
Identities = 332/715 (46%), Positives = 459/715 (63%), Gaps = 68/715 (9%)
Query: 303 VDPKTNKIYTSRHVVFHDNHFPY------------PTINQNAHAANLPI----------- 339
+D T ++YTSRHV F ++ FP+ P ++Q+ ++P+
Sbjct: 731 LDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTRPVSVPLLARPLTTAPPS 790
Query: 340 -------------NISLIPPHTI---LSLNPTIP---PPQAPNSLMA---------TTPP 371
+ +L PP + LSL+PT P P + SL+ ++PP
Sbjct: 791 SPSCSAPHRSPSQSENLSPPAPLQPSLSLSPTSPITSPSLSEESLVGHNSETGPTGSSPP 850
Query: 372 TPEAILQEAPLSPSTSSGNESSPSP-------SPTNNSIALTNPPADSNATN-------H 417
+ P SP ++S + SSP P SP + + LT+ P+ S N H
Sbjct: 851 LSPQPQRPQPQSPQSTSPHSSSPQPNSPNPQHSPRSLTPTLTSSPSPSPPPNPNPPPIQH 910
Query: 418 II-TRSQNNIFKPK-KFFYASNHPLP-ENLEPSNVRQAMQHPHWRQAISEEFNALIRNGT 474
+ TRS+NNI KP KF + P P + + P V +A+ P+WRQA+ +E NA RNGT
Sbjct: 911 TMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVVEALLDPNWRQAMCDEINAQTRNGT 970
Query: 475 WSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQ 534
+ LVPP N+N+V CKW+F +K +G +D YKARLVAKGF Q G DFKETF+PV++
Sbjct: 971 FDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKST 1030
Query: 535 TIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYG 594
T++ +L IA++KGW + Q+DVNNAFLQG+L++EVY+ QPPG D +VC+L+KA+YG
Sbjct: 1031 TVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYG 1090
Query: 595 LRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLH 654
L+QAPRAW+ L++++ + GF S +D SLF T+ Y LVYVDD+L+TG+D + +
Sbjct: 1091 LKQAPRAWYQELRSYLLTQGFVNSVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIIT 1150
Query: 655 HFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPL 714
FI +L+ RFSLK +G YFLGIE + L L Q +++ D+L++ +M AA P TP+
Sbjct: 1151 RFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPM 1210
Query: 715 STTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLK 774
S T L+L G + YR ++G+LQYL TRPD+++A+N+LSQ+MH PT LH+Q K
Sbjct: 1211 SPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAK 1270
Query: 775 RLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRK 834
R+LRYL T + GI ++ LTL Y+DADW G+ID+ ST+AY++Y G NPISW S+K
Sbjct: 1271 RILRYLAGTPSHGIFIRADTPLTLHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKK 1330
Query: 835 QRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLH 894
Q+ VARSSTEAEYRAVA AT+EI W+ +LL+EL I LS PP++ CDNVGATYL +NPV H
Sbjct: 1331 QKGVARSSTEAEYRAVANATSEIRWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFH 1390
Query: 895 SKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
S+MKHI+LD+HFVRE V+ G L+V+HVSTKDQLAD LTKPLPR F L SK+ V
Sbjct: 1391 SRMKHIALDFHFVRESVQAGALRVTHVSTKDQLADALTKPLPRQPFTTLISKIGV 1445
Score = 180 bits (456), Expect = 2e-43
Identities = 108/332 (32%), Positives = 170/332 (50%), Gaps = 32/332 (9%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEKHV----------DYNYWRRQDKLILHAILSSVEAS 52
Q +ALL GYDL G+VDG+ P P DY W+RQDKLI A+L ++ S
Sbjct: 43 QVHALLDGYDLAGYVDGSIPIPTPTRTTADGVVTTNNDYTLWKRQDKLIYSALLGAISLS 102
Query: 53 IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
+ +L S + W+ L+ FA+ + A + L+++L + +KG+KS+ Y Q D
Sbjct: 103 VQPLLSKANTSAEIWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSIVTYFQGFTTRFDH 162
Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
LA++ K + ++ + GL ++K + + REN A E+ + L++HE L E
Sbjct: 163 LALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRENPPALTEVLEKLINHEVKLAAKAE 222
Query: 173 PTIIPTA--QVAYRGKPKYH----KNGSFHNHINPSVNNISDSQGQQK------QVMCQF 220
T +P V YRG + NG ++ N S N + +Q+ Q CQ
Sbjct: 223 ATSVPVTANAVNYRGNNNNNNNSRSNGRNNSRGNTSWQNSQSTSNRQQYTPRPYQGKCQI 282
Query: 221 CDKSGHTAKECYKI--HGYPSKNGVRSAAHSARYTPHT--------DETDWILDSGATHH 270
C GH+A+ C ++ H + S+A A + P + +W+LDSGATHH
Sbjct: 283 CSVHGHSARRCPQLQQHAGSYASNQSSSASYAPWQPRANMVSATPYNSGNWLLDSGATHH 342
Query: 271 LTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
LT+NL++L + PY+G +++ I DG+ LPISH
Sbjct: 343 LTSNLNNLALHQPYNGDEEVTIADGSGLPISH 374
>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 617 bits (1590), Expect = e-175
Identities = 331/715 (46%), Positives = 458/715 (63%), Gaps = 68/715 (9%)
Query: 303 VDPKTNKIYTSRHVVFHDNHFPY------------PTINQNAHAANLPI----------- 339
+D T ++YTSRHV F ++ FP+ P ++Q+ ++P+
Sbjct: 731 LDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTRPVSVPLLARPLTTAPPS 790
Query: 340 -------------NISLIPPHTI---LSLNPTIP---PPQAPNSLMA---------TTPP 371
+ +L PP + LSL+PT P P + SL+ ++PP
Sbjct: 791 SPSCSAPHRSPSQSENLSPPAPLQPSLSLSPTSPITSPSLSEESLVGHNSETGPTGSSPP 850
Query: 372 TPEAILQEAPLSPSTSSGNESSPSP-------SPTNNSIALTNPPADSNATN-------H 417
+ P SP ++S + SSP P SP + + LT+ P+ S N H
Sbjct: 851 LSPQPQRPQPQSPQSTSPHSSSPQPNSPNPQHSPRSLTPTLTSSPSPSPPPNPNPPPIQH 910
Query: 418 II-TRSQNNIFKPK-KFFYASNHPLP-ENLEPSNVRQAMQHPHWRQAISEEFNALIRNGT 474
+ TRS+NNI KP KF + P P + + P V +A+ P+WRQA+ +E NA RNGT
Sbjct: 911 TMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVVEALLDPNWRQAMCDEINAQTRNGT 970
Query: 475 WSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQ 534
+ LVPP N+N+V CKW+F +K +G +D YKARLVAKGF Q G DFKETF+PV++
Sbjct: 971 FDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKST 1030
Query: 535 TIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYG 594
T++ +L IA++KGW + Q+DVNNAFLQG+L++EVY+ QPPG D +VC+L+KA+YG
Sbjct: 1031 TVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYG 1090
Query: 595 LRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLH 654
L+QAPRAW+ L++++ + GF S +D SLF T+ Y LVYVDD+L+TG+D + +
Sbjct: 1091 LKQAPRAWYQELRSYLLTQGFVNSVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIIT 1150
Query: 655 HFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPL 714
FI +L+ RFSLK +G YFLGIE + L L Q +++ D+L++ +M AA P TP+
Sbjct: 1151 RFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPM 1210
Query: 715 STTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLK 774
S T L+L G + YR ++G+LQYL TRPD+++A+N+LSQ+MH PT LH+Q K
Sbjct: 1211 SPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAK 1270
Query: 775 RLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRK 834
R+LRYL T + GI ++ LTL Y+DADW G+ID+ ST+AY++Y G NPISW S+K
Sbjct: 1271 RILRYLAGTPSHGIFIRADTPLTLHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKK 1330
Query: 835 QRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLH 894
Q+ VARSSTEAEYRAVA AT+EI W+ +LL+EL I LS PP++ CDNVGATYL +NPV
Sbjct: 1331 QKGVARSSTEAEYRAVANATSEIRWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFD 1390
Query: 895 SKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
S+MKHI+LD+HFVRE V+ G L+V+HVSTKDQLAD LTKPLPR F L SK+ V
Sbjct: 1391 SRMKHIALDFHFVRESVQAGALRVTHVSTKDQLADALTKPLPRQPFTTLISKIGV 1445
Score = 177 bits (450), Expect = 1e-42
Identities = 106/332 (31%), Positives = 170/332 (50%), Gaps = 32/332 (9%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEKHV----------DYNYWRRQDKLILHAILSSVEAS 52
Q +ALL GYDL G++DG+ P P DY W+RQDKLI A+L ++ S
Sbjct: 43 QVHALLDGYDLAGYIDGSIPIPTPTRTTADGVVTTNNDYTLWKRQDKLIYSALLGAISLS 102
Query: 53 IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
+ +L S + W+ L+ FA+ + A + L+++L + +KG+KS+ Y Q D
Sbjct: 103 VQPLLSKANTSAEIWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSIVTYFQGFTTRFDH 162
Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
LA++ K + ++ + GL ++K + + REN A E+ + L++HE L E
Sbjct: 163 LALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRENPPALTEVLEKLINHEVKLAAKAE 222
Query: 173 PTIIPTA--QVAYRGKPKYH----KNGSFHNHINPSVNNISDSQGQQK------QVMCQF 220
T +P V YRG + NG ++ N S N + +Q+ Q CQ
Sbjct: 223 ATSVPVTANAVNYRGNNNNNNNSRSNGRNNSRGNTSWQNSQSTSNRQQYTPRPYQGKCQI 282
Query: 221 CDKSGHTAKECYKI--HGYPSKNGVRSAAHSARYTPHT--------DETDWILDSGATHH 270
C GH+A+ C ++ H + S+A A + P + +W+LDSGATHH
Sbjct: 283 CSVHGHSARRCPQLQQHAGSYASNQSSSASYAPWQPRANMVSATPYNSGNWLLDSGATHH 342
Query: 271 LTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
LT++L++L + PY+G +++ I DG+ LPISH
Sbjct: 343 LTSDLNNLALHQPYNGDEEVTIADGSGLPISH 374
>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 616 bits (1588), Expect = e-174
Identities = 331/715 (46%), Positives = 458/715 (63%), Gaps = 68/715 (9%)
Query: 303 VDPKTNKIYTSRHVVFHDNHFPY------------PTINQNAHAANLPI----------- 339
+D T ++YTSRHV F ++ FP+ P ++Q+ ++P+
Sbjct: 731 LDRATGRVYTSRHVQFAESSFPFSTTSPSVTPPSDPPLSQDTRPVSVPLLARPLTTAPPS 790
Query: 340 -------------NISLIPPHTI---LSLNPTIP---PPQAPNSLMA---------TTPP 371
+ +L PP + LSL+PT P P + SL+ ++PP
Sbjct: 791 SPSCSAPHRSPSQSENLSPPAPLQPSLSLSPTSPITSPSLSEESLVGHNSETGPTGSSPP 850
Query: 372 TPEAILQEAPLSPSTSSGNESSPSP-------SPTNNSIALTNPPADSNATN-------H 417
+ P SP ++S + SSP P SP + + LT+ P+ S N H
Sbjct: 851 LSPQPQRPQPQSPQSTSPHSSSPQPNSPNPQHSPRSLTPTLTSSPSPSPPPNPNPPPIQH 910
Query: 418 II-TRSQNNIFKPK-KFFYASNHPLP-ENLEPSNVRQAMQHPHWRQAISEEFNALIRNGT 474
+ TRS+NNI KP KF + P P + + P V +A+ P+WRQA+ +E NA RNGT
Sbjct: 911 TMRTRSKNNIVKPNPKFANLATKPTPLKPIIPKTVVEALLDPNWRQAMCDEINAQTRNGT 970
Query: 475 WSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQ 534
+ LVPP N+N+V CKW+F +K +G +D YKARLVAKGF Q G DFKETF+PV++
Sbjct: 971 FDLVPPAPNQNVVGCKWVFTLKYLSNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKLT 1030
Query: 535 TIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYG 594
T++ +L IA++KGW + Q+DVNNAFLQG+L++EVY+ QPPG D +VC+L+KA+YG
Sbjct: 1031 TVRSVLHIAVSKGWSIRQIDVNNAFLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYG 1090
Query: 595 LRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLH 654
L+QAPRAW+ L++++ + GF S +D SLF T+ Y LVYVDD+L+TG+D + +
Sbjct: 1091 LKQAPRAWYQELRSYLLTQGFVNSVADTSLFTLRHERTILYVLVYVDDMLITGSDTNIIT 1150
Query: 655 HFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPL 714
FI +L+ RFSLK +G YFLGIE + L L Q +++ D+L++ +M AA P TP+
Sbjct: 1151 RFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPM 1210
Query: 715 STTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLK 774
S T L+L G + YR ++G+LQYL TRPD+++A+N+LSQ+MH PT LH+Q K
Sbjct: 1211 SPTPKLSLTSGKPLDKPSEYRAVLGSLQYLLFTRPDIAYAVNRLSQYMHCPTDLHWQAAK 1270
Query: 775 RLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRK 834
R+LRYL T + GI ++ LTL Y+DADW G+ID+ ST+AY++Y G NPISW S+K
Sbjct: 1271 RILRYLAGTPSHGIFIRADTPLTLHAYSDADWAGDIDNYNSTNAYILYLGSNPISWSSKK 1330
Query: 835 QRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLH 894
Q+ VARSSTEAEYRAVA AT+EI W+ +LL+EL I LS PP++ CDNVGATYL +NPV
Sbjct: 1331 QKGVARSSTEAEYRAVANATSEIRWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFD 1390
Query: 895 SKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
S+MKHI+LD+HFVRE V+ G L+V+HVSTKDQLAD LTKPLPR F L SK+ V
Sbjct: 1391 SRMKHIALDFHFVRESVQAGALRVTHVSTKDQLADALTKPLPRQPFTTLISKIGV 1445
Score = 178 bits (451), Expect = 9e-43
Identities = 107/332 (32%), Positives = 170/332 (50%), Gaps = 32/332 (9%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEKHV----------DYNYWRRQDKLILHAILSSVEAS 52
Q +ALL GYDL G+VDG+ P P DY W+RQDKLI A+L ++ S
Sbjct: 43 QVHALLDGYDLAGYVDGSIPIPTPTRTTADGVVTTNNDYTLWKRQDKLIYSALLGAISLS 102
Query: 53 IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
+ +L S + W+ L+ FA+ + A + L+++L + +KG+KS+ Y Q D
Sbjct: 103 VQPLLSKANTSAEIWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSIVTYFQGFTTRFDH 162
Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
LA++ K + ++ + GL ++K + + REN A E+ + L++HE L E
Sbjct: 163 LALLGKAPEREEQIELILGGLPEDYKTVVDQIEGRENPPALTEVLEKLINHEVKLAAKAE 222
Query: 173 PTIIPTA--QVAYRGKPKYH----KNGSFHNHINPSVNNISDSQGQQK------QVMCQF 220
T +P V YRG + NG ++ N S N + +Q+ Q CQ
Sbjct: 223 ATSVPVTANAVNYRGNNNNNNNSRSNGRNNSRGNTSWQNSQSTSNRQQYTPRPYQGKCQI 282
Query: 221 CDKSGHTAKECYKI--HGYPSKNGVRSAAHSARYTPHT--------DETDWILDSGATHH 270
C GH+A+ C ++ H + S+A A + P + +W+LDSGATHH
Sbjct: 283 CSVHGHSARRCPQLQQHAGSYASNQSSSASYAPWQPRANMVSATPYNSGNWLLDSGATHH 342
Query: 271 LTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
LT++L++L + PY+G +++ I DG+ LPISH
Sbjct: 343 LTSDLNNLALHQPYNGDEEVTIADGSGLPISH 374
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 613 bits (1580), Expect = e-173
Identities = 324/718 (45%), Positives = 452/718 (62%), Gaps = 73/718 (10%)
Query: 303 VDPKTNKIYTSRHVVFHDNHFPYPTIN----QNAHAANLPINISLIP---------PHTI 349
+D TN+IYTSRHV F ++ FP+ + + + P ++IP P T
Sbjct: 712 LDIATNRIYTSRHVQFVESSFPFASPRTSETDSTQTMSQPTTTNVIPLLQRPPHIAPPTA 771
Query: 350 LSLNPTI-PPPQAPNSLMA----------------------------------------T 368
L L P PP +P+S + T
Sbjct: 772 LPLCPIFHSPPHSPSSPASPPSEHVPLTAASSSSNAINDDNISSTGQVSVSGPTSQSPHT 831
Query: 369 TP-----------PTPEAILQEAPLSPSTS---SGNESSPSPSPTNNSIALTNPPADSNA 414
TP P P Q +P TS S ++ SP+PSP + L PP + +
Sbjct: 832 TPTNQNTSPLSKSPNPTNTNQSQNSTPPTSPTTSVHQHSPTPSPLPQNPPLPPPPQNDHP 891
Query: 415 TNHIITRSQNNIFKPK-KFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNG 473
TR++N I KPK KF ++ + P+ V QA++ P+WR A+SEE NA ++N
Sbjct: 892 MR---TRAKNQITKPKTKFNLTTSLTSSKPTIPTTVAQALKDPNWRNAMSEEINAQMKNH 948
Query: 474 TWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRP 533
TW LV P + K+++ CKW+F +K N DG+I YKARLVA+GF Q G+D+ ETF+PV++
Sbjct: 949 TWDLVSPEEAKHVISCKWIFTLKYNVDGSIARYKARLVARGFNQQYGIDYSETFSPVIKS 1008
Query: 534 QTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIY 593
TI+ +L +A+ + W +HQ+D+NNAFLQG+LNEEVY++QPPG D +P++VC+L+KA+Y
Sbjct: 1009 TTIRTVLEVAVKRNWSIHQVDINNAFLQGTLNEEVYVSQPPGFIDRDRPSHVCRLNKALY 1068
Query: 594 GLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFL 653
GL+QAPRAW+ L+ F+ GF S +D SLFIY T Y LVYVDD+++ G +A +
Sbjct: 1069 GLKQAPRAWYQELRRFLLQAGFVNSLADASLFIYNRHNTFMYVLVYVDDIIIAGENA-LV 1127
Query: 654 HHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTP 713
F SL++RFSLK +G YFLGIE + L L Q K+I D+L++ +M KP TP
Sbjct: 1128 QAFNASLASRFSLKDLGPLSYFLGIEATRTSRGLHLMQRKYITDLLKKHNMLDTKPVSTP 1187
Query: 714 LSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHL 773
+S T L+L GTA D+T YR ++G+LQYL TRPD++FA+N+LSQFMH+PT+ H+Q
Sbjct: 1188 MSPTPKLSLLSGTALDDATEYRTVLGSLQYLAFTRPDIAFAVNRLSQFMHRPTNEHWQAA 1247
Query: 774 KRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSR 833
KR+LRYL T + GI L+ LT+ ++DADW ++D ST+AY++YFGG+P+SW S+
Sbjct: 1248 KRILRYLAGTKSHGIFLRSDTPLTIHAFSDADWGCDLDAYLSTNAYIVYFGGSPVSWSSK 1307
Query: 834 KQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVL 893
KQR+VARSSTEAEYRAVA +E+ W+ +LL E+ I + P++ CDN+GATYLC+NPV
Sbjct: 1308 KQRSVARSSTEAEYRAVANTASELRWLCSLLLEMGISQTTVPVIYCDNIGATYLCANPVF 1367
Query: 894 HSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKVTD 951
HS+MKH++LDYHFVR ++ G L+VSHVSTKDQLAD LTKPLPR +F EL SK+ V +
Sbjct: 1368 HSRMKHVALDYHFVRGYIQSGALRVSHVSTKDQLADALTKPLPRPRFTELNSKIGVQE 1425
Score = 159 bits (403), Expect = 3e-37
Identities = 98/338 (28%), Positives = 165/338 (47%), Gaps = 38/338 (11%)
Query: 3 QFNALLIGYDLFGFVDGTKPEP---------AEKHVDYNYWRRQDKLILHAILSSVEASI 53
Q +ALL GYDL G+VDG+ EP + +Y W+RQDKLI ++ ++ ++
Sbjct: 18 QVHALLDGYDLAGYVDGSIEEPHTTVTVHGVTSPNPEYKLWKRQDKLIYSGLIGAISVAV 77
Query: 54 ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
+L S W L +A+ +R ++E++ + KGS+S+ +Y+ + D+L
Sbjct: 78 QPLLSQATTSAQIWRKLVDTYANPSRGHKQQIREQIKQWKKGSRSIDDYVLGLTTRFDQL 137
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
A++ + I +D + + GL +++ + + R+ + + ELH+ L++ E LQ
Sbjct: 138 ALLEEAIPHEDQIAYILGGLSDDYRRVIDQIEGRDISPSITELHEKLINFELKLQAMVPD 197
Query: 174 TIIP-TAQVA----------YRGKPKYHKNGSF-HNHINPSVNNISDSQGQQKQVMCQFC 221
+ P TA A R + ++N + N S +N SQG+ Q CQ C
Sbjct: 198 SSTPVTANAASYNNNNNGRNNRSSSRGNQNNQWQQNQTQQSRSNNRGSQGKGYQGRCQIC 257
Query: 222 DKSGHTAKECYKIHGYPSKNGVRSA-----------AHSARYTPHTD------ETDWILD 264
GH+A+ C + Y G +S + A + P + W+LD
Sbjct: 258 GVHGHSARRCSQFQPYGGSGGSQSVPSGYPTNGYSPSPMAPWQPRANIATAPPFNPWVLD 317
Query: 265 SGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
SGATHHLT++L +L + PY G +++ I DG+ LPISH
Sbjct: 318 SGATHHLTSDLANLSMHQPYTGGEEVTIADGSGLPISH 355
>emb|CAB46043.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268438|emb|CAB80958.1| retrotransposon like protein
[Arabidopsis thaliana] gi|25301691|pir||B85188
retrotransposon like protein [imported] - Arabidopsis
thaliana
Length = 1474
Score = 611 bits (1576), Expect = e-173
Identities = 340/739 (46%), Positives = 451/739 (61%), Gaps = 94/739 (12%)
Query: 304 DPKTNKIYTSRHVVFHDNHFPYP-----------TINQNAHAANLPI--NISLIP----- 345
D + ++YTSRHVVF + FP+ T Q++ PI + S++P
Sbjct: 731 DVEHKRLYTSRHVVFDEASFPFSNLTSQNSLPTVTFEQSSSPLVTPILSSSSVLPSCLSS 790
Query: 346 PHTIL-SLNPTIPPPQAPNSLMATTPPTP-------------EAILQEAPLSPSTSS--- 388
P T+L P + P +P+S TT P P + +PL S+SS
Sbjct: 791 PCTVLHQQQPPVTTPNSPHSSQPTTSPAPLSPHRSTTMDFQVPQVRSSSPLLSSSSSLNS 850
Query: 389 ----GNESSPSP-----------SPTNNSIALTNPPADSNATNHI--------------- 418
NE+ P P +PT+ + P + N TN I
Sbjct: 851 EPTAPNENGPEPEAQSPPIGPLSNPTHEAFIGPLPNPNRNPTNEIEPTPAPHPKPVKPTT 910
Query: 419 ---------------------------ITRSQNNIFKPK-KFFYASNHPLPENLEPSNVR 450
TR++NNI KP KF + P EP+NV
Sbjct: 911 TTTTPNRTTVSDASHQPTAPQQNQHNMKTRAKNNIKKPNTKFSLTATLPNRSPSEPTNVT 970
Query: 451 QAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARL 510
QA++ WR A+S+EF+A RN TW LV P +++ +V CKW+F++K P+G ID YKARL
Sbjct: 971 QALKDKKWRFAMSDEFDAQQRNHTWDLV-PHESQLLVGCKWVFKLKYLPNGAIDKYKARL 1029
Query: 511 VAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYM 570
VAKGF Q GVD+ ETF+PV++ TI+L+L +A+ K W++ QLDVNNAFLQG+L EEVYM
Sbjct: 1030 VAKGFNQQYGVDYAETFSPVIKSTTIRLVLDVAVKKDWEIKQLDVNNAFLQGTLTEEVYM 1089
Query: 571 AQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASG 630
AQPPG D +PT+VC+L KAIYGL+QAPRAW+ LK + + GF S SD SLFIY G
Sbjct: 1090 AQPPGFIDKDRPTHVCRLRKAIYGLKQAPRAWYMELKQHLFNIGFVNSLSDASLFIYCHG 1149
Query: 631 TTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLS 690
TT Y LVYVDD+++TG+D S + + SL+ RFS+K HYFLGIE +K L L
Sbjct: 1150 TTFVYVLVYVDDIIVTGSDKSSIDAVLTSLAERFSIKDPTDLHYFLGIEATRTKQGLHLM 1209
Query: 691 QHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPD 750
Q K+I+D+L + +M AKP TPL T+ LTL+ GT D++ YR ++G+LQYL TRPD
Sbjct: 1210 QRKYIKDLLAKHNMADAKPVLTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPD 1269
Query: 751 LSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNI 810
+++A+N+LSQ M +PT H+Q KR+LRYL T GI L T+ L L ++DADW G+
Sbjct: 1270 IAYAVNRLSQLMPQPTEDHWQAAKRVLRYLAGTSTHGIFLDTTSPLNLHAFSDADWAGDS 1329
Query: 811 DDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIP 870
DD ST+AY+IY G NPISW S+KQR VARSSTE+EYRAVA A +E+ W+ +LLS+LHI
Sbjct: 1330 DDYVSTNAYVIYLGKNPISWSSKKQRGVARSSTESEYRAVANAASEVKWLCSLLSKLHIR 1389
Query: 871 LSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADL 930
L P + CDN+GATYLC+NPV HS+MKHI++DYHFVR ++ G L+VSHVST+DQLAD
Sbjct: 1390 LPIRPSIFCDNIGATYLCANPVFHSRMKHIAIDYHFVRNMIQSGALRVSHVSTRDQLADA 1449
Query: 931 LTKPLPRAKFEELRSKMKV 949
LTKPL RA F+ R K+ V
Sbjct: 1450 LTKPLSRAHFQSARFKIGV 1468
Score = 152 bits (384), Expect = 5e-35
Identities = 91/331 (27%), Positives = 166/331 (49%), Gaps = 33/331 (9%)
Query: 2 VQFNALLIGYDLFGFVDGTKPEPA---------EKHVDYNYWRRQDKLILHAILSSVEAS 52
+Q +ALL GY+L G +DG+ PA + Y W+RQD+LI A++ ++
Sbjct: 44 LQIHALLDGYELAGHLDGSIETPAPTLTTNNVVSANPQYTLWKRQDRLIFSALIGAISPP 103
Query: 53 IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
+ ++ + W L +A + I L+ ++ + KG+K++ EY+ + + D+
Sbjct: 104 VQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKKGTKTIDEYVLSHTTLLDQ 163
Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
LAI+ KP++ ++ V GL ++K + + ++N + E+H+ L++HE L
Sbjct: 164 LAILGKPMEHEEQVERILEGLPEDYKTVVDQIEGKDNTPSITEIHERLINHEAKLLSTAA 223
Query: 173 PTIIPTAQVAYRGKPKYHKN-------------GSFHNHINPSVNNISDSQGQQKQV-MC 218
+ A + ++H N ++ N+ PS NN S + + + C
Sbjct: 224 LSSSSLPMSANVAQQRHHNNNRNNNQNKNRTQGNTYTNNWQPSANNKSGQRPFKPYLGKC 283
Query: 219 QFCDKSGHTAKECYKIHG-YPSKNGVRSA-------AHSARYTPHTDETDWILDSGATHH 270
Q C+ GH+A+ C ++ PS + S A+ A P+T +W+LDSGATHH
Sbjct: 284 QICNVQGHSARRCPQLQAMQPSSSSSASTFTPWQPRANLAMGAPYT-ANNWLLDSGATHH 342
Query: 271 LTNNLDDLHITNPYHGSDKIIIGDGNTLPIS 301
+T++L+ L + PY+G D ++I DG +L I+
Sbjct: 343 ITSDLNALALHQPYNGDD-VMIADGTSLKIT 372
>emb|CAB77781.1| putative polyprotein of LTR transposon [Arabidopsis thaliana]
gi|3924609|gb|AAC79110.1| putative polyprotein of LTR
transposon [Arabidopsis thaliana] gi|7444420|pir||T01397
LTR gag/pol polyprotein homolog T4I9.16 - Arabidopsis
thaliana
Length = 1456
Score = 610 bits (1574), Expect = e-173
Identities = 322/636 (50%), Positives = 424/636 (66%), Gaps = 26/636 (4%)
Query: 324 PYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAPN--SLMATTP------PTPEA 375
P+ T N N+ N PI + + NP P P +PN S + +P PTP
Sbjct: 824 PHQTQNSNS---NSPI---------LNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPST 871
Query: 376 ILQEAPLSPSTSSGNESSPSPSPTNNSIALTNPPADSNATNHIITRSQNNIFKP-KKFFY 434
+ E P SPS+SS + P I N A N T+ + TR+++ I KP +K+ Y
Sbjct: 872 SISE-PNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVN-THSMATRAKDGIRKPNQKYSY 929
Query: 435 ASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPK-NKNIVDCKWLF 493
A++ L N EP QAM+ WRQA+ E NA I N TW LVPPP + IV C+W+F
Sbjct: 930 ATS--LAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIF 987
Query: 494 RIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQL 553
K N DG+++ YKARLVAKG+ Q PG+D+ ETF+PV++ +I+++L +A+ + W + QL
Sbjct: 988 TKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1047
Query: 554 DVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSH 613
DVNNAFLQG+L +EVYM+QPPG D +P YVC+L KAIYGL+QAPRAW+ L+T++ +
Sbjct: 1048 DVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTV 1107
Query: 614 GFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPH 673
GF S SD SLF+ G ++ Y LVYVDD+L+TGND L H + +LS RFS+K H
Sbjct: 1108 GFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLH 1167
Query: 674 YFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTL 733
YFLGIE L LSQ ++ D+L R +M AKP TP++T+ LTL+ GT D T
Sbjct: 1168 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1227
Query: 734 YRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKT 793
YR I+G+LQYL TRPDLS+A+N+LSQ+MH PT H+ LKR+LRYL T + GI LKK
Sbjct: 1228 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKG 1287
Query: 794 NALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATA 853
N L+L Y+DADW G+ DD ST+ Y++Y G +PISW S+KQ+ V RSSTEAEYR+VA
Sbjct: 1288 NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1347
Query: 854 TAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRD 913
++E+ WI +LL+EL I LS PP++ CDNVGATYLC+NPV HS+MKHI+LDYHF+R QV+
Sbjct: 1348 SSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQS 1407
Query: 914 GKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
G L+V HVST DQLAD LTKPL R F+ K+ V
Sbjct: 1408 GALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443
Score = 147 bits (372), Expect = 1e-33
Identities = 96/335 (28%), Positives = 160/335 (47%), Gaps = 55/335 (16%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
Q +AL GY+L GF+DG+ P P + DY WRRQDKLI AIL ++ S+
Sbjct: 37 QVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLIYSAILGAISMSV 96
Query: 54 ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
+ + W+ L K++A+ + + L+ +TR D+L
Sbjct: 97 QPAVSRATTAAQIWETLRKIYANPSYGHVTQLRF-ITRF------------------DQL 137
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
A++ KP+D D+ V L ++K + + ++ + E+H+ L++ E+ L
Sbjct: 138 ALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALNSA 197
Query: 174 TIIP-TAQVAY------------RGKPK-YHKNGSFHNHINPSVNNISDSQGQQKQVM-- 217
++P TA V RG + Y+ N + N PS + Q K +
Sbjct: 198 EVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGR 257
Query: 218 CQFCDKSGHTAKECYKIHGYPSKNGVRSA----------AHSARYTPHTDETDWILDSGA 267
CQ C GH+AK C ++H + S + + A+ A +P+ + +W+LDSGA
Sbjct: 258 CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPY-NANNWLLDSGA 316
Query: 268 THHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
THH+T++ ++L PY G D ++I DG+T+PI+H
Sbjct: 317 THHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 351
>dbj|BAA78424.1| polyprotein [Arabidopsis thaliana]
Length = 1330
Score = 610 bits (1574), Expect = e-173
Identities = 322/636 (50%), Positives = 424/636 (66%), Gaps = 26/636 (4%)
Query: 324 PYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAPN--SLMATTP------PTPEA 375
P+ T N N+ N PI + + NP P P +PN S + +P PTP
Sbjct: 698 PHQTQNSNS---NSPI---------LNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPST 745
Query: 376 ILQEAPLSPSTSSGNESSPSPSPTNNSIALTNPPADSNATNHIITRSQNNIFKP-KKFFY 434
+ E P SPS+SS + P I N A N T+ + TR+++ I KP +K+ Y
Sbjct: 746 SISE-PNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVN-THSMATRAKDGIRKPNQKYSY 803
Query: 435 ASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPK-NKNIVDCKWLF 493
A++ L N EP QAM+ WRQA+ E NA I N TW LVPPP + IV C+W+F
Sbjct: 804 ATS--LAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIF 861
Query: 494 RIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQL 553
K N DG+++ YKARLVAKG+ Q PG+D+ ETF+PV++ +I+++L +A+ + W + QL
Sbjct: 862 TKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 921
Query: 554 DVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSH 613
DVNNAFLQG+L +EVYM+QPPG D +P YVC+L KAIYGL+QAPRAW+ L+T++ +
Sbjct: 922 DVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTV 981
Query: 614 GFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPH 673
GF S SD SLF+ G ++ Y LVYVDD+L+TGND L H + +LS RFS+K H
Sbjct: 982 GFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLH 1041
Query: 674 YFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTL 733
YFLGIE L LSQ ++ D+L R +M AKP TP++T+ LTL+ GT D T
Sbjct: 1042 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1101
Query: 734 YRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKT 793
YR I+G+LQYL TRPDLS+A+N+LSQ+MH PT H+ LKR+LRYL T + GI LKK
Sbjct: 1102 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKG 1161
Query: 794 NALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATA 853
N L+L Y+DADW G+ DD ST+ Y++Y G +PISW S+KQ+ V RSSTEAEYR+VA
Sbjct: 1162 NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1221
Query: 854 TAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRD 913
++E+ WI +LL+EL I LS PP++ CDNVGATYLC+NPV HS+MKHI+LDYHF+R QV+
Sbjct: 1222 SSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQS 1281
Query: 914 GKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
G L+V HVST DQLAD LTKPL R F+ K+ V
Sbjct: 1282 GALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1317
Score = 104 bits (260), Expect = 1e-20
Identities = 63/218 (28%), Positives = 109/218 (49%), Gaps = 27/218 (12%)
Query: 111 DELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRD 170
D+LA++ KP+D D+ V L ++K + + ++ + E+H+ L++ E+ L
Sbjct: 9 DQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLAL 68
Query: 171 QEPTIIP-TAQVAY------------RGKPK-YHKNGSFHNHINPSVNNISDSQGQQKQV 216
++P TA V RG + Y+ N + N PS + Q K
Sbjct: 69 NSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPY 128
Query: 217 M--CQFCDKSGHTAKECYKIHGYPSKNGVRSA----------AHSARYTPHTDETDWILD 264
+ CQ C GH+AK C ++H + S + + A+ A +P+ + +W+LD
Sbjct: 129 LGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPY-NANNWLLD 187
Query: 265 SGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
SGATHH+T++ ++L PY G D ++I DG+T+PI+H
Sbjct: 188 SGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 225
>gb|AAK43485.1| polyprotein, putative [Arabidopsis thaliana]
Length = 1459
Score = 609 bits (1571), Expect = e-172
Identities = 333/719 (46%), Positives = 450/719 (62%), Gaps = 72/719 (10%)
Query: 303 VDPKTNKIYTSRHVVFHDNHFPY---------------PTINQNAHAANLPINISLIPPH 347
+D N++YTSRHV+F ++ +P+ P + ++ AN S++
Sbjct: 735 LDVDNNRLYTSRHVMFDESTYPFAASIREQSQSSLVTPPESSSSSSPANSGFPCSVLRLQ 794
Query: 348 TILSLNPTIP-PPQ----APNSLMATTPPTPE--AILQEAPLSPSTSSGNESS------- 393
+ + +P P PPQ +P S T PTP + ++++ LSPS S N
Sbjct: 795 SPPASSPETPSPPQQQNDSPVSPRQTGSPTPSHHSQVRDSTLSPSPSVSNSEPTAPHENG 854
Query: 394 -----------------PSPSP-TNNSIALTNPPADSNAT-------------------- 415
P+P+P TN S ++ P D + T
Sbjct: 855 PEPEAQSNPNSPFIGPLPNPNPETNPSSSIEQRPVDKSTTTALPPNQTTIAATSNSRSQP 914
Query: 416 ---NHII-TRSQNNIFKPK-KFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALI 470
NH + TRS+NNI KPK K P EP+ V QA++ WR A+S+EF+A
Sbjct: 915 PKNNHQMKTRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDKKWRFAMSDEFDAQQ 974
Query: 471 RNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPV 530
RN TW LVPP +++V C+W+F++K P+G ID YKARLVAKGF Q GVD+ ETF+PV
Sbjct: 975 RNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAETFSPV 1034
Query: 531 VRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHK 590
++ TI+++L +A+ K W + QLDVNNAFLQG+L EEVYMAQPPG D +P++VC+L K
Sbjct: 1035 IKATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLRK 1094
Query: 591 AIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDA 650
AIYGL+QAPRAW+ LK + + GF S +D SLFIY+ GTTL Y LVYVDD+++TG+D
Sbjct: 1095 AIYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDDIIVTGSDH 1154
Query: 651 SFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPT 710
+ + SL+ RFS+K HYFLGIE + T L L Q K++ D+L + +M AKP
Sbjct: 1155 KSVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTDLLAKHNMLDAKPV 1214
Query: 711 YTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHF 770
TPL T+ LTL+ GT D++ YR ++G+LQYL TRPD++FA+N+LSQFMH+PTS H+
Sbjct: 1215 ATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQPTSDHW 1274
Query: 771 QHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISW 830
Q KR+LRYL T GI L ++ + L ++DADW G+ D ST+AY+IY G NPISW
Sbjct: 1275 QAAKRVLRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVIYLGRNPISW 1334
Query: 831 LSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSN 890
S+KQR V+RSSTE+EYRAVA A +EI W+ +LL+ELHI L P + CDN+GATY+C+N
Sbjct: 1335 SSKKQRGVSRSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTIFCDNIGATYICAN 1394
Query: 891 PVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
PV HS+MKHI+LDYHFVR ++ L+VSHVST DQLAD LTK L R F RSK+ V
Sbjct: 1395 PVFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADALTKSLSRPHFLSARSKIGV 1453
Score = 167 bits (422), Expect = 2e-39
Identities = 100/340 (29%), Positives = 172/340 (50%), Gaps = 47/340 (13%)
Query: 2 VQFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEAS 52
+Q +ALL GYDL G++D + P E + + W+RQDKLI A++ ++ +
Sbjct: 43 IQIHALLDGYDLAGYLDNSVVIPPETTTINSVVSANPSFTLWKRQDKLIFSALIGAISPA 102
Query: 53 IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
+ +++ NS W LN +A + I L++++ R +KG+K++ EY+Q+ D+
Sbjct: 103 VQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTKTIDEYVQSHTTRLDQ 162
Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
LAI+ KP++ ++ V H GL E+K + + ++N E+H+ L++HE+ L D+
Sbjct: 163 LAILGKPMEHEEQVEHILKGLPEEYKTVVDQIEGKDNTPTITEIHERLINHESKLLSDEV 222
Query: 173 P--TIIPTAQVAYRGK-------PKYHKN---GSFHN-----HINPSVNNISDSQGQQKQ 215
P + P + A + + HKN G+ HN + PS N S + +
Sbjct: 223 PPSSSFPMSANAVQQRNFNNNCNQNQHKNRYQGNTHNNNTNTNSQPSTYNKSGQRTFKPY 282
Query: 216 V-MCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHTD--------------ETD 260
+ CQ C GH+A+ C P ++ A S+ ++P T
Sbjct: 283 LGKCQICSVQGHSARRC------PQLQAMQLPASSSAHSPFTPWQPRANLAIGSPYAANP 336
Query: 261 WILDSGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPI 300
W+LDSGATHH+T++L+ L + PY+G + ++I DG L I
Sbjct: 337 WLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTI 376
>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 606 bits (1563), Expect = e-171
Identities = 320/636 (50%), Positives = 424/636 (66%), Gaps = 26/636 (4%)
Query: 324 PYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAPN--SLMATTP------PTPEA 375
P+ T N N+ N PI + + NP P P +PN S + +P PTP
Sbjct: 843 PHQTQNSNS---NSPI---------LNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPST 890
Query: 376 ILQEAPLSPSTSSGNESSPSPSPTNNSIALTNPPADSNATNHIITRSQNNIFKP-KKFFY 434
+ E P SPS+SS + P I N A N T+ + TR+++ I KP +K+ Y
Sbjct: 891 SISE-PNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVN-THSMATRAKDGIRKPNQKYSY 948
Query: 435 ASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPK-NKNIVDCKWLF 493
A++ L N EP QAM+ WRQA+ + NA I N TW LVPPP + IV C+W+F
Sbjct: 949 ATS--LAANSEPRTAIQAMKDDRWRQAMGSKINAQIGNHTWDLVPPPPPSVTIVGCRWIF 1006
Query: 494 RIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQL 553
K N DG+++ YKARLVAKG+ Q PG+D+ ETF+PV++ +I+++L +A+ + W + QL
Sbjct: 1007 TKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1066
Query: 554 DVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSH 613
DVNNAFLQG+L +EVYM+QPPG D +P YVC+L KAIYGL+QAPRAW+ L+T++ +
Sbjct: 1067 DVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTV 1126
Query: 614 GFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPH 673
GF S SD SLF+ G ++ Y LVYVDD+L+TGND L H + +LS RFS+K H
Sbjct: 1127 GFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLH 1186
Query: 674 YFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTL 733
YFLGIE L LSQ ++ D+L R +M AKP TP++T+ LTL+ GT D T
Sbjct: 1187 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1246
Query: 734 YRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKT 793
YR I+G+LQYL TRPDLS+A+N+LSQ+MH PT ++ LKR+LRYL T + GI LKK
Sbjct: 1247 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDNWNALKRVLRYLAGTPDHGIFLKKG 1306
Query: 794 NALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATA 853
N L+L Y+DADW G+ DD ST+ Y++Y G +PISW S+KQ+ V RSSTEAEYR+VA
Sbjct: 1307 NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1366
Query: 854 TAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRD 913
++E+ WI +LL+EL I LS PP++ CDNVGATYLC+NPV HS+MKHI+LDYHF+R QV+
Sbjct: 1367 SSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQS 1426
Query: 914 GKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
G L+V HVST DQLAD LTKPL R F+ K+ V
Sbjct: 1427 GALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1462
Score = 174 bits (441), Expect = 1e-41
Identities = 106/364 (29%), Positives = 182/364 (49%), Gaps = 38/364 (10%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
Q +AL GY+L GF+DG+ P P + DY WRRQDKLI AIL ++ S+
Sbjct: 37 QVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLIYSAILGAISMSV 96
Query: 54 ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
+ + W+ L K++A+ + + L+ +L + +KG+K++ +Y+Q D+L
Sbjct: 97 QPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQGFITRFDQL 156
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
A++ KP+D D+ V L ++K + + ++ + E+H+ L++ E+ L
Sbjct: 157 ALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINQESKLLALNSA 216
Query: 174 TIIP-TAQVA------------YRGKPK-YHKNGSFHNHINPSVNNISDSQGQQKQVM-- 217
++P TA V RG + Y+ N + N PS + Q K +
Sbjct: 217 EVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGR 276
Query: 218 CQFCDKSGHTAKECYKIHGYPSKNGVRSA----------AHSARYTPHTDETDWILDSGA 267
CQ C GH+AK C ++H + S + + A+ A +P+ + +W+LDSGA
Sbjct: 277 CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPY-NANNWLLDSGA 335
Query: 268 THHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVDPKTNKIYTSRHVVFHDNHFPYPT 327
THH+T++ ++L PY G D ++I DG+T+PI+H + + TS + + P
Sbjct: 336 THHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTG--SASLPTSSRSLDLNKVLYVPN 393
Query: 328 INQN 331
IN+N
Sbjct: 394 INKN 397
>dbj|BAA78425.1| polyprotein [Arabidopsis thaliana]
Length = 1447
Score = 604 bits (1557), Expect = e-171
Identities = 330/731 (45%), Positives = 442/731 (60%), Gaps = 87/731 (11%)
Query: 306 KTNKIYTSRHVVFHDNHFPY------------------------------------PTIN 329
+T++IY SRHV F +N FP+ P+ +
Sbjct: 713 QTSRIYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCS 772
Query: 330 QNAHAANLPINISLIPPHTILSLN----------PTIPPPQAP--NSLMATTPPTP---- 373
HAA P + S ++ +S + P+ P P AP N TT PT
Sbjct: 773 DPHHAATPPSSPSAPSRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ 832
Query: 374 --------------EAILQEAPLSPSTSSGNESSPSP---------SPTNNSIALTNPPA 410
E+ Q A + + + SSPSP SPT SI + PP
Sbjct: 833 THSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 892
Query: 411 DSNATNH----------IITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQ 460
+ N+ + TR++ I KP Y+ L EP QA++ WR
Sbjct: 893 LAQIVNNNNQAPINTHSMGTRAKAGIIKPN-LKYSLAVSLAAESEPRTAIQALKDERWRN 951
Query: 461 AISEEFNALIRNGTWSLVPPPKNK-NIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCP 519
A+ E NA I N TW LVPPP + IV C+W+F K N DG+++ YKARLVAKG+ Q P
Sbjct: 952 AMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRP 1011
Query: 520 GVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDS 579
G+D+ ETF+PV++ +I+++L +A+ + W + QLDVNNAFLQG+L ++VYM+QPPG D
Sbjct: 1012 GLDYVETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDK 1071
Query: 580 QQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVY 639
+P YVCKL KA+YGL+QAPRAW+ L+ ++ + GF S SD SLF+ G ++ Y LVY
Sbjct: 1072 DRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVY 1131
Query: 640 VDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDIL 699
VDD+L+TGND + LH+ + +LS RFS+K HYFLGIE T L LSQ ++I D+L
Sbjct: 1132 VDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLL 1191
Query: 700 QRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLS 759
R +M AKP TP++ + L+L GT D T YR I+G+LQYL TRPD+S+A+N+LS
Sbjct: 1192 ARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLS 1251
Query: 760 QFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAY 819
QFMH PT H Q LKR+LRYL T N GI LKK N L+L Y+DADW G+ DD ST+ Y
Sbjct: 1252 QFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWTGDKDDYVSTNGY 1311
Query: 820 LIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLC 879
++Y G +PISW S+KQ+ V RSSTEAEYR+VA ++E+ WI +LL+EL I L++PP++ C
Sbjct: 1312 IVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYC 1371
Query: 880 DNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAK 939
DNVGATYLC+NPV HS+MKHI++DYHF+R QV+ G L+V HVST DQLAD LTKPL R
Sbjct: 1372 DNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTA 1431
Query: 940 FEELRSKMKVT 950
F+ SK+ VT
Sbjct: 1432 FQNFASKIGVT 1442
Score = 167 bits (423), Expect = 2e-39
Identities = 124/474 (26%), Positives = 216/474 (45%), Gaps = 56/474 (11%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
Q +AL GY+L GF+DG+ P + DY W+RQDKLI A+L ++ S+
Sbjct: 18 QVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSV 77
Query: 54 ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
+ + W+ L K++A+ + + + +L + +KG+K++ +Y+Q D+L
Sbjct: 78 QPAVSRATTAAQIWETLRKIYANPSYGHVTQFRTQLKQWTKGTKTIDDYMQGFVTHFDQL 137
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
A++ KP+D D+ V L E+K + + ++ E+H+ L++ E+ +
Sbjct: 138 ALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNQESKILAVSSA 197
Query: 174 TIIPTA--QVAYR-----------GKPKYHKNGSFHNHINP---SVNNISDSQGQQKQVM 217
T+IP V++R + + N + +N+ P S +N + Q K +
Sbjct: 198 TVIPITANAVSHRNTTTTTNNNNGNRTNRYDNRNNNNNSKPWQQSSSNFRPNNNQSKPYL 257
Query: 218 --CQFCDKSGHTAKECYKI-HGYPSKNGVRSAAHSARYTPHTD--------ETDWILDSG 266
CQ C GH+AK C ++ H S N + + + P + W+LDSG
Sbjct: 258 GKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTLWQPRANLALGSPYSSNSWLLDSG 317
Query: 267 ATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVDPKTNKIYTSRHVVFHDNHFPYP 326
ATHH+T++ ++L + PY G D +++ DG+T+PISH T+ SR + H N P
Sbjct: 318 ATHHITSDFNNLSLHQPYTGGDDVMVVDGSTIPISHTG-STSLSTKSRPLNLH-NILYVP 375
Query: 327 TINQNAHAANLPINIS------LIPPHTILSLNPTIPPPQAPNSLMATTPPTPEAILQEA 380
I++N + N + + + LN +P Q + L E
Sbjct: 376 NIHKNLISVYRLCNANGVSVEFFLASFQVKDLNTGVPLLQGKT----------KDELYEW 425
Query: 381 PLSPSTSSGNESSPSPSPTNNS-IALTNPPADSNATNHIITRSQNNIFKPKKFF 433
P++ S +SPS T++S A PA S N +I+ ++ P F
Sbjct: 426 PIASSQPVSLFASPSSKATHSSWHARLGHPAPS-ILNSVISNYSLSVLNPSHKF 478
>dbj|BAB84015.1| polyprotein [Arabidopsis thaliana] gi|14475941|gb|AAK62788.1|
polyprotein, putative [Arabidopsis thaliana]
Length = 1466
Score = 602 bits (1553), Expect = e-170
Identities = 330/731 (45%), Positives = 441/731 (60%), Gaps = 87/731 (11%)
Query: 306 KTNKIYTSRHVVFHDNHFPY--------PTINQNAHAA-------NLPINISLIP----- 345
+T+++Y SRHV F +N FP+ P Q ++ LP ++P
Sbjct: 732 QTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCS 791
Query: 346 -PH-------------------------TILSLNPTIPPPQAP--NSLMATTPPTP---- 373
PH + S P+ P P AP N TT PT
Sbjct: 792 DPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ 851
Query: 374 --------------EAILQEAPLSPSTSSGNESSPSP---------SPTNNSIALTNPPA 410
E+ Q A + + + SSPSP SPT SI + PP
Sbjct: 852 THSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 911
Query: 411 DSNATNH----------IITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQ 460
+ N+ + TR++ I KP Y+ L EP QA++ WR
Sbjct: 912 LAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPK-YSLAVSLAAESEPRTAIQALKDERWRN 970
Query: 461 AISEEFNALIRNGTWSLVPPPKNK-NIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCP 519
A+ E NA I N TW LVPPP + IV C+W+F K N DG+++ YKARLVAKG+ Q P
Sbjct: 971 AMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRP 1030
Query: 520 GVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDS 579
G+D+ ETF+PV++ +I+++L +A+ + W + QLDVNNAFLQG+L ++VYM+QPPG D
Sbjct: 1031 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDK 1090
Query: 580 QQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVY 639
+P YVCKL KA+YGL+QAPRAW+ L+ ++ + GF S SD SLF+ G ++ Y LVY
Sbjct: 1091 DRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVY 1150
Query: 640 VDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDIL 699
VDD+L+TGND + LH+ + +LS RFS+K HYFLGIE T L LSQ ++I D+L
Sbjct: 1151 VDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLL 1210
Query: 700 QRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLS 759
R +M AKP TP++ + L+L GT D T YR I+G+LQYL TRPD+S+A+N+LS
Sbjct: 1211 ARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLS 1270
Query: 760 QFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAY 819
QFMH PT H Q LKR+LRYL T N GI LKK N L+L Y+DADW G+ DD ST+ Y
Sbjct: 1271 QFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGY 1330
Query: 820 LIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLC 879
++Y G +PISW S+KQ+ V RSSTEAEYR+VA ++E+ WI +LL+EL I L++PP++ C
Sbjct: 1331 IVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYC 1390
Query: 880 DNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAK 939
DNVGATYLC+NPV HS+MKHI++DYHF+R QV+ G L+V HVST DQLAD LTKPL R
Sbjct: 1391 DNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTA 1450
Query: 940 FEELRSKMKVT 950
F+ SK+ VT
Sbjct: 1451 FQNFASKIGVT 1461
Score = 174 bits (442), Expect = 1e-41
Identities = 129/477 (27%), Positives = 220/477 (46%), Gaps = 62/477 (12%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
Q +AL GY+L GF+DG+ P + DY W+RQDKLI A+L ++ S+
Sbjct: 37 QVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSV 96
Query: 54 ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
+ + W+ L K++A+ + + L+ +L + +KG+K++ +Y+Q + D+L
Sbjct: 97 QPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQL 156
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
A++ KP+D D+ V L E+K + + ++ E+H+ L++HE+ +
Sbjct: 157 ALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSA 216
Query: 174 TIIPTA--QVAYRG--KPKYHKNGSFHNHINPSVNNISDSQGQQKQV------------- 216
T+IP V++R + NG+ +N + NN + QQ
Sbjct: 217 TVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYL 276
Query: 217 -MCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHT-----------DETDWILD 264
CQ C GH+AK C ++ + S V S + +TP +W+LD
Sbjct: 277 GKCQICGVQGHSAKRCSQLQHFLS--SVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLD 334
Query: 265 SGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVDPKTNKIYTSRHVVFHDNHFP 324
SGATHH+T++ ++L + PY G D +++ DG+T+PISH T+ SR + H N
Sbjct: 335 SGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTG-STSLSTKSRPLNLH-NILY 392
Query: 325 YPTINQNAHA------ANLPINISLIP-PHTILSLNPTIPPPQAPNSLMATTPPTPEAIL 377
P I++N + AN +++ P + LN +P Q + L
Sbjct: 393 VPNIHKNLISVYRLCNAN-GVSVEFFPASFQVKDLNTGVPLLQGKT----------KDEL 441
Query: 378 QEAPLSPSTSSGNESSPSPSPTNNS-IALTNPPADSNATNHIITRSQNNIFKPKKFF 433
E P++ S +SPS T++S A PA S N +I+ ++ P F
Sbjct: 442 YEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPS-ILNSVISNYSLSVLNPSHKF 497
>gb|AAK62793.1| polyprotein, putative [Arabidopsis thaliana]
Length = 1466
Score = 601 bits (1549), Expect = e-170
Identities = 329/731 (45%), Positives = 440/731 (60%), Gaps = 87/731 (11%)
Query: 306 KTNKIYTSRHVVFHDNHFPY--------PTINQNAHAA-------NLPINISLIP----- 345
+T+++Y SRHV F +N FP+ P Q ++ LP ++P
Sbjct: 732 QTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCS 791
Query: 346 -PH-------------------------TILSLNPTIPPPQAP--NSLMATTPPTP---- 373
PH + S P+ P P AP N TT PT
Sbjct: 792 DPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ 851
Query: 374 --------------EAILQEAPLSPSTSSGNESSPSP---------SPTNNSIALTNPPA 410
E+ Q A + + + SSPSP SPT SI + PP
Sbjct: 852 THSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 911
Query: 411 DSNATNH----------IITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQ 460
+ N+ + TR++ I KP Y+ L EP QA++ WR
Sbjct: 912 LAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPK-YSLAVSLAAESEPRTAIQALKDERWRN 970
Query: 461 AISEEFNALIRNGTWSLVPPPKNK-NIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCP 519
A+ E NA I N TW LVPPP + IV C+W+F K N DG+++ YKAR VAKG+ Q P
Sbjct: 971 AMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRP 1030
Query: 520 GVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDS 579
G+D+ ETF+PV++ +I+++L +A+ + W + QLDVNNAFLQG+L ++VYM+QPPG D
Sbjct: 1031 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDK 1090
Query: 580 QQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVY 639
+P YVCKL KA+YGL+QAPRAW+ L+ ++ + GF S SD SLF+ G ++ Y LVY
Sbjct: 1091 DRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVY 1150
Query: 640 VDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDIL 699
VDD+L+TGND + LH+ + +LS RFS+K HYFLGIE T L LSQ ++I D+L
Sbjct: 1151 VDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLL 1210
Query: 700 QRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLS 759
R +M AKP TP++ + L+L GT D T YR I+G+LQYL TRPD+S+A+N+LS
Sbjct: 1211 ARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLS 1270
Query: 760 QFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAY 819
QFMH PT H Q LKR+LRYL T N GI LKK N L+L Y+DADW G+ DD ST+ Y
Sbjct: 1271 QFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGY 1330
Query: 820 LIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLC 879
++Y G +PISW S+KQ+ V RSSTEAEYR+VA ++E+ WI +LL+EL I L++PP++ C
Sbjct: 1331 IVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYC 1390
Query: 880 DNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAK 939
DNVGATYLC+NPV HS+MKHI++DYHF+R QV+ G L+V HVST DQLAD LTKPL R
Sbjct: 1391 DNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTA 1450
Query: 940 FEELRSKMKVT 950
F+ SK+ VT
Sbjct: 1451 FQNFASKIGVT 1461
Score = 174 bits (442), Expect = 1e-41
Identities = 129/477 (27%), Positives = 220/477 (46%), Gaps = 62/477 (12%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
Q +AL GY+L GF+DG+ P + DY W+RQDKLI A+L ++ S+
Sbjct: 37 QVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSV 96
Query: 54 ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
+ + W+ L K++A+ + + L+ +L + +KG+K++ +Y+Q + D+L
Sbjct: 97 QPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQL 156
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
A++ KP+D D+ V L E+K + + ++ E+H+ L++HE+ +
Sbjct: 157 ALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSA 216
Query: 174 TIIPTA--QVAYRG--KPKYHKNGSFHNHINPSVNNISDSQGQQKQV------------- 216
T+IP V++R + NG+ +N + NN + QQ
Sbjct: 217 TVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYL 276
Query: 217 -MCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHT-----------DETDWILD 264
CQ C GH+AK C ++ + S V S + +TP +W+LD
Sbjct: 277 GKCQICGVQGHSAKRCSQLQHFLS--SVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLD 334
Query: 265 SGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVDPKTNKIYTSRHVVFHDNHFP 324
SGATHH+T++ ++L + PY G D +++ DG+T+PISH T+ SR + H N
Sbjct: 335 SGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTG-STSLSTKSRPLNLH-NILY 392
Query: 325 YPTINQNAHA------ANLPINISLIP-PHTILSLNPTIPPPQAPNSLMATTPPTPEAIL 377
P I++N + AN +++ P + LN +P Q + L
Sbjct: 393 VPNIHKNLISVYRLCNAN-GVSVEFFPASFQVKDLNTGVPLLQGKT----------KDEL 441
Query: 378 QEAPLSPSTSSGNESSPSPSPTNNS-IALTNPPADSNATNHIITRSQNNIFKPKKFF 433
E P++ S +SPS T++S A PA S N +I+ ++ P F
Sbjct: 442 YEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPS-ILNSVISNYSLSVLNPSHKF 497
>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
Length = 1431
Score = 600 bits (1548), Expect = e-170
Identities = 309/609 (50%), Positives = 409/609 (66%), Gaps = 20/609 (3%)
Query: 353 NPTIPPPQAPNSLMATTPPTPEAILQEAPLSPSTSSGNESSPSPSPTNNSIALTNPPADS 412
NPT P S +A + TP +P SP+TS+ SS S SPT SI + PP +
Sbjct: 827 NPTNESP----SQLAQSLSTPAQSSSSSP-SPTTSA---SSSSTSPTPPSILIHPPPPLA 878
Query: 413 NATNH----------IITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQAI 462
N+ + TR++ I KP Y+ L EP QA++ WR A+
Sbjct: 879 QIVNNNNQAPLNTHSMGTRAKAGIIKPNPK-YSLAVSLAAESEPRTAIQALKDERWRNAM 937
Query: 463 SEEFNALIRNGTWSLVPPPKNK-NIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGV 521
E NA I N TW LVPPP + IV C+W+F K N DG+++ YKAR VAKG+ Q PG+
Sbjct: 938 GSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGL 997
Query: 522 DFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQ 581
D+ ETF+PV++ +I+++L +A+ + W + QLDVNNAFLQG+L ++VYM+QPPG D +
Sbjct: 998 DYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDR 1057
Query: 582 PTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVD 641
P YVCKL KA+YGL+QAPRAW+ L+ ++ + GF S SD SLF+ G ++ Y LVYVD
Sbjct: 1058 PNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVD 1117
Query: 642 DLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQR 701
D+L+TGND + LH+ + +LS RFS+K HYFLGIE T L LSQ ++I D+L R
Sbjct: 1118 DILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLAR 1177
Query: 702 FDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQF 761
+M AKP TP++ + L+L GT D T YR I+G+LQYL TRPD+S+A+N+LSQF
Sbjct: 1178 TNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQF 1237
Query: 762 MHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLI 821
MH PT H Q LKR+LRYL T N GI LKK N L+L Y+DADW G+ DD ST+ Y++
Sbjct: 1238 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1297
Query: 822 YFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDN 881
Y G +PISW S+KQ+ V RSSTEAEYR+VA ++E+ WI +LL+EL I L++PP++ CDN
Sbjct: 1298 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1357
Query: 882 VGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFE 941
VGATYLC+NPV HS+MKHI++DYHF+R QV+ G L+V HVST DQLAD LTKPL R F+
Sbjct: 1358 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1417
Query: 942 ELRSKMKVT 950
SK+ VT
Sbjct: 1418 NFASKIGVT 1426
Score = 127 bits (319), Expect = 2e-27
Identities = 104/399 (26%), Positives = 180/399 (45%), Gaps = 53/399 (13%)
Query: 72 KMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPN 131
K A+ + + L+ +L + +KG+K++ +Y+Q + D+LA++ KP+D D+ V
Sbjct: 80 KTQANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLE 139
Query: 132 GLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEPTIIPTA--QVAYRG--KP 187
L E+K + + ++ E+H+ L++HE+ + T+IP V++R
Sbjct: 140 NLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTT 199
Query: 188 KYHKNGSFHNHINPSVNNISDSQGQQKQV--------------MCQFCDKSGHTAKECYK 233
+ NG+ +N + NN + QQ CQ C GH+AK C +
Sbjct: 200 TNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQ 259
Query: 234 IHGYPSKNGVRSAAHSARYTPHT-----------DETDWILDSGATHHLTNNLDDLHITN 282
+ + S V S + +TP +W+LDSGATHH+T++ ++L +
Sbjct: 260 LQHFLS--SVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQ 317
Query: 283 PYHGSDKIIIGDGNTLPISHVDPKTNKIYTSRHVVFHDNHFPYPTINQNAHA------AN 336
PY G D +++ DG+T+PISH T+ SR + H N P I++N + AN
Sbjct: 318 PYTGGDDVMVADGSTIPISHTG-STSLSTKSRPLNLH-NILYVPNIHKNLISVYRLCNAN 375
Query: 337 LPINISLIP-PHTILSLNPTIPPPQAPNSLMATTPPTPEAILQEAPLSPSTSSGNESSPS 395
+++ P + LN +P Q + L E P++ S +SPS
Sbjct: 376 -GVSVEFFPASFQVKDLNTGVPLLQGKT----------KDELYEWPIASSQPVSLFASPS 424
Query: 396 PSPTNNS-IALTNPPADSNATNHIITRSQNNIFKPKKFF 433
T++S A PA S N +I+ ++ P F
Sbjct: 425 SKATHSSWHARLGHPAPS-ILNSVISNYSLSVLNPSHKF 462
Score = 51.2 bits (121), Expect = 2e-04
Identities = 52/190 (27%), Positives = 76/190 (39%), Gaps = 34/190 (17%)
Query: 306 KTNKIYTSRHVVFHDNHFPYPTINQNAHAANLPI------NISLIPPHTIL-SLNPTIPP 358
+T+++Y SRHV F +N FP+ N A P+ + + PHT L + P +P
Sbjct: 697 QTSRLYISRHVRFDENCFPF----SNYLATLSPVQEQRRESSCVWSPHTTLPTRTPGLPA 752
Query: 359 PQAPNSLMATTPP-TPEAILQEAPLSPST-----SSGNESSPSPSP--TNNSIALTNPPA 410
P + A TPP +P A + + +S S SS SSP P+ N T P
Sbjct: 753 PSGSDPHHAATPPSSPSAPFRNSQVSSSNRESYFSSSFPSSPEPTAPRQNGPQPKTQPTQ 812
Query: 411 DSNATNHIITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALI 470
T+ SQNN P N PS + Q++ P + S
Sbjct: 813 TQTQTHSSQNTSQNN---------------PTNESPSQLAQSLSTPAQSSSSSPSPTTSA 857
Query: 471 RNGTWSLVPP 480
+ + S PP
Sbjct: 858 SSSSTSPTPP 867
>gb|AAF99727.1| F17L21.7 [Arabidopsis thaliana]
Length = 1534
Score = 593 bits (1530), Expect = e-168
Identities = 318/708 (44%), Positives = 444/708 (61%), Gaps = 60/708 (8%)
Query: 303 VDPKTNKIYTSRHVVFHDNHFPYPTINQNAHAANLPINISLI---PPHTILSLNPTIPPP 359
+D + ++YTSRHV F ++ FP+ + ++ + + P S PP I + + P
Sbjct: 822 LDRSSGRVYTSRHVQFVEDQFPFSISDTHSVSNSSPEEASPSCHQPPSRIPIQSSSPPLV 881
Query: 360 QAPNSLMATT---------------------------------------PPTPEAILQEA 380
QAP+SL + P + + +
Sbjct: 882 QAPSSLPPLSSDSHRRPNAETSSSSSSTNNDVVVSKDNTQVDNRNNFIGPTSSSSAQSQN 941
Query: 381 PLSPSTS--SGNESSPSPSPT----------NNSIALT----NPPADSNATNHII-TRSQ 423
+PS+S + NE +PSPSPT ++S + T NPP NH + TR++
Sbjct: 942 NSNPSSSIQTQNEPNPSPSPTPQNSSPESSPSSSTSATSTVPNPPPPPPTNNHPMRTRAK 1001
Query: 424 NNIFKPK-KFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPK 482
N+I KPK K + P+ V QA++ WR A+ EE NA IRN T+ LVPP
Sbjct: 1002 NHITKPKTKLSLLAKTVQTRPQIPNTVNQALRDEKWRNAMGEEINAQIRNNTFELVPPKP 1061
Query: 483 NKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTI 542
N+N++ KW+F +K P+GT+D YKARLVA+GF Q G+ + ETF+PVV+ TI+L+L +
Sbjct: 1062 NQNVISTKWIFTLKYLPNGTLDRYKARLVARGFRQQYGLHYSETFSPVVKSLTIRLVLQL 1121
Query: 543 ALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAW 602
A+++ W + QLDVNNAFLQG+L +EVY+ QPPG D +P +VC+L KA+YGL+QAPRAW
Sbjct: 1122 AVSRSWTIKQLDVNNAFLQGTLTDEVYVTQPPGFIDPDRPHHVCRLKKALYGLKQAPRAW 1181
Query: 603 HDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSN 662
+ L+ F+ S GFT S +D S+F+Y + + Y LVYVDD+++TG+ + + FI +LS
Sbjct: 1182 YQELRNFVCSLGFTNSLADTSVFVYINDIQIVYCLVYVDDIIVTGSSDALVMAFITALSR 1241
Query: 663 RFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTL 722
RFSLK YFLGIE + L L QHK++ D+L R M AKP TP++T L+L
Sbjct: 1242 RFSLKDPTDLVYFLGIEATRTSQGLHLMQHKYVYDLLSRMKMLDAKPVSTPMATHPKLSL 1301
Query: 723 NDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKA 782
G A + YR +IG+LQYL TRPD+++A+N+LSQFMH+PT +H+Q KR+LRYL
Sbjct: 1302 YSGIALDEPGEYRTVIGSLQYLAFTRPDIAYAVNRLSQFMHRPTDIHWQAAKRVLRYLAG 1361
Query: 783 TINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSS 842
T GILL+ + L+L ++DADW G+ DD ST+AY++Y G PI+W S+KQ+ VARSS
Sbjct: 1362 TATHGILLRSNSPLSLHAFSDADWAGDNDDFVSTNAYIVYLGSTPIAWSSKKQKGVARSS 1421
Query: 843 TEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISL 902
TEAEYRAVA T+EI W+ +LL+EL I L K P++ CDNVGATYL +NPV HS+MKH++L
Sbjct: 1422 TEAEYRAVANTTSEIRWVCSLLTELGITLPKMPVIYCDNVGATYLSANPVFHSRMKHLAL 1481
Query: 903 DYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKVT 950
DYHF+R+ V G L+VSH+ST DQLAD LTKPLPR F + SK+ V+
Sbjct: 1482 DYHFIRDNVSAGALRVSHISTHDQLADALTKPLPRQHFLQFSSKIGVS 1529
Score = 162 bits (409), Expect = 7e-38
Identities = 124/468 (26%), Positives = 209/468 (44%), Gaps = 68/468 (14%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
Q ALL GYDL G++DG+ P + + +W+RQD+LI A+L ++ S+
Sbjct: 138 QVQALLNGYDLTGYIDGSIVVPPATITANGAVTVNPAFKHWQRQDQLIYSALLGAISISV 197
Query: 54 ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
+L S + W L +A + + I L++++ + K +KS+ E+ Q + D+L
Sbjct: 198 QPILSRTTTSAEIWTKLMDTYAKPSWSHIQQLRQQIKQWKKDTKSIDEFFQGLVMRFDQL 257
Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
A++ KP++ ++ + GL ++K++ ++ RE + E+H+ L++HE LQ
Sbjct: 258 ALLGKPMESEEQMEVIVEGLSDDYKQVIDQIQGREVPPSLTEIHEKLLNHEVKLQAAASS 317
Query: 174 TIIPTAQVAYRGKP-KYHKNGSFHNHINPSVNNISDSQGQQK----------QVMCQFCD 222
I +YR H N + + N + NN + QQ Q CQ C
Sbjct: 318 LPISANAASYRPPANNKHNNSNNYRGQNRNNNNRGANSYQQPRNDQPSSRGYQGKCQICG 377
Query: 223 KSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHT------------DETDWILDSGATHH 270
GH+A+ C ++ +G S ++Y T W+LDSGATHH
Sbjct: 378 VFGHSARRCSQL----QMSGAYSTPSPSQYPNATVPWQPRANMAAMSYNPWLLDSGATHH 433
Query: 271 LTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVDPKTNKIYTSRHVVFHDNHFPYPTINQ 330
LT +L++L + PY+G +++ I DG+TLPI+H T + T + +N P +++
Sbjct: 434 LTTDLNNLALHQPYNGGEEVTIADGSTLPITHTGSST--LSTQSRSLALNNILYVPNLHK 491
Query: 331 N-------------------AH--AANLPINISLIPPHTILSLNPTIPPPQAPNSLMATT 369
N AH +L L+ T L P P SL A+
Sbjct: 492 NLISVYKLCNANKVSVEFFPAHFQVKDLSTGARLLQGRTKDELYEWPVPSNTPISLFAS- 550
Query: 370 PPTPEAILQEAPLSPSTSSGNESSPSPSPTNNSIALTNPPADSNATNH 417
PTP+ L PS S PSP + ++ + P +++ H
Sbjct: 551 -PTPKTTL------PSWHS-RLGHPSPPVLKSLVSQFSLPVSNSSQKH 590
>gb|AAP53968.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37534758|ref|NP_921681.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 932
Score = 578 bits (1491), Expect = e-163
Identities = 322/774 (41%), Positives = 457/774 (58%), Gaps = 41/774 (5%)
Query: 192 NGSFHNHINPSVNNISDSQGQQKQVMCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSAR 251
+GSF+N+ P+ CQ C K GHT +C+K S G +A+ A
Sbjct: 183 DGSFNNNNRPT---------------CQLCGKIGHTVHKCWKRFD-ASFTGEDKSANVAA 226
Query: 252 YTPHTDETDWILDSGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLP--------ISHV 303
+ D T+W +DSGAT H+T+ LD L + + Y G+D++ G+ + S
Sbjct: 227 SSYEVD-TNWYIDSGATDHITSELDKLTVKDKYAGNDQVHTASGSGVAQIGGSATGSSAA 285
Query: 304 DPKTNKIYTSRHVVFHDNHFPY---PTINQNAHAANLPINISLIPPHTILSLNPTIPPPQ 360
+ ++ + V + + P +Q + A N P +S
Sbjct: 286 ETRSPGSASREESVSPEETHDFMHGPVQSQFSIGAAGAGNDDGSPVLRDVSAELQSDSDA 345
Query: 361 AP-NSLMATTPPTPEAILQEAPLSPSTSSGNESSPSPSPTNNSIALTNPPADSNATNHII 419
AP +S +T+ P+ A+ ST + +SPSP+ + S S+ T +
Sbjct: 346 APISSSPSTSAPSGGAV-------HSTHADQVTSPSPAASEQSEQEQQTTQASDQTRPV- 397
Query: 420 TRSQNNIFKPKKFFYASNHP--LPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSL 477
TR Q I KPK++ + L EP N+R+AM + +WR A+ +E++A + N TW L
Sbjct: 398 TRLQKGISKPKRYTDGTVRYGCLTTTGEPENLREAMANSNWRLAMEQEYSAFMSNKTWHL 457
Query: 478 VPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIK 537
VPP + KNI+DCKW+++IKR DG+ID YKARLVAKGF Q G+D+++TF+ VV+ TI+
Sbjct: 458 VPPTQGKNIIDCKWMYKIKRKADGSIDRYKARLVAKGFKQRYGIDYEDTFSLVVKAATIR 517
Query: 538 LILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQ 597
LIL+IA++KGW + QLDV NAFL G L EEVYM QPPG ++ QP Y+CKL KA+YGL+Q
Sbjct: 518 LILSIAVSKGWSLRQLDVQNAFLHGYLEEEVYMRQPPGFENKGQPNYLCKLDKALYGLKQ 577
Query: 598 APRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFI 657
APRAW+ L T + GF +S++D SLF Y G + LVYVDD+++ + A + +
Sbjct: 578 APRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCTIFILVYVDDIIVASSSAEVVAALL 637
Query: 658 QSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTT 717
+ L F+LK +G HYFLGIE+ L LSQ + DIL+R M KP TPLSTT
Sbjct: 638 KDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTT 697
Query: 718 STLTLNDG--TAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKR 775
L++ DG D++ YR I+GALQYL LTR DLSF +NK+ QF+H PT++H+ +KR
Sbjct: 698 EKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKR 757
Query: 776 LLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQ 835
+LRY+K T+ FG+ K++++ + ++DADW G DDR ST + ++ G N ISW +RKQ
Sbjct: 758 ILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQ 817
Query: 836 RTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHS 895
TV+RSSTEAEY+A+A AT E+ W+ +L EL I L CDN+GATYL +NPV H+
Sbjct: 818 ATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHA 877
Query: 896 KMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
+ KHI +DYHFVREQV L + +ST DQLAD TK LP + R + +
Sbjct: 878 RTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLPAPSLAQYRHNLNL 931
Score = 67.0 bits (162), Expect = 3e-09
Identities = 28/67 (41%), Positives = 48/67 (70%)
Query: 62 NSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDELAIINKPID 121
N+ D WD + ++F S++RARI++ L+ T KG++S++EY+ +K ++DE+A K +D
Sbjct: 81 NAADVWDAIEEIFNSQSRARIINTHMALSSTVKGNRSIAEYVGKMKGLADEMASAGKALD 140
Query: 122 DDDLVIH 128
DDDL+ H
Sbjct: 141 DDDLISH 147
>gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein [Zea mays]
gi|7444442|pir||T02087 gag/pol polyprotein - maize
retrotransposon Hopscotch
Length = 1439
Score = 554 bits (1427), Expect = e-156
Identities = 295/706 (41%), Positives = 429/706 (59%), Gaps = 64/706 (9%)
Query: 303 VDPKTNKIYTSRHVVFHDNHFPYPTINQNA-----------------------HAANLPI 339
+D T +IY SR VVF ++ FP+ ++N+NA HA NLP
Sbjct: 720 LDISTGRIYISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPG 779
Query: 340 NISLIP----------------PHTILSL------NPTIPPPQAPNSLMATTPPTPEAI- 376
+ S +P +T ++L ++PP P+SL+ P P +
Sbjct: 780 SSSPLPFLAQHFLQGNSEVPTSNNTAMALPASGPNEVSVPPALVPSSLVPAASPAPTGVS 839
Query: 377 --LQEAPLSPSTSSGN-----------ESSPSPSPTNNSIALTNPPADSNATNHIITRSQ 423
+ AP + S SSG ++ P +S+A P + + TR Q
Sbjct: 840 ANAEPAPEADSLSSGPPVATESVTGVPDADPLLQAPGSSVAHQTPDSAPLSAAAPRTRLQ 899
Query: 424 NNIFKPKKFFYAS---NHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPP 480
+ I KPK+F + + EPS+V +A+ P WR A+ EF AL +N TW+LVPP
Sbjct: 900 HGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPP 959
Query: 481 PKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLIL 540
+ +N++DCKW+F++K N DG+ID KARLVAKGF Q G+D+ +TF+PVV+ TI+L+L
Sbjct: 960 DRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVL 1019
Query: 541 TIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPR 600
++A+++ W + QLDV NAFL G L E VYM QPPG D+ P Y C L K++YGL+Q PR
Sbjct: 1020 SLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRPR 1079
Query: 601 AWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSL 660
AW+ L + S GF S++D SLFIY + +T Y LVYVDD+++TG+ + + + L
Sbjct: 1080 AWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIIITGSSPHAIDNVLAKL 1139
Query: 661 SNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTL 720
+ F++K +G HYFLGIE+ L L Q K+ RD+L+R M+ KP +TP++T+ L
Sbjct: 1140 KDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRVGMECCKPVHTPVATSEKL 1199
Query: 721 TLNDGT--AAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLR 778
+ + GT + ++T YR ++GALQYL LTRPDLS+AIN++ QF+H PT LH+ +KR+LR
Sbjct: 1200 SASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILR 1259
Query: 779 YLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTV 838
++ TI G+ ++ + +L L ++DADW G DDR ST Y ++ G N ISW S+KQ TV
Sbjct: 1260 NIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTV 1319
Query: 839 ARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMK 898
+RSSTEAEY+A+A ATAE++W+ +LL EL I L+ P L CDN+GATYL S P+ +++ K
Sbjct: 1320 SRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLGATYLSSKPIFNARTK 1379
Query: 899 HISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELR 944
HI +D+HFVR++V KL + +ST DQ+AD TK L + E R
Sbjct: 1380 HIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALTIGRLNEFR 1425
Score = 126 bits (317), Expect = 3e-27
Identities = 96/385 (24%), Positives = 160/385 (40%), Gaps = 58/385 (15%)
Query: 31 YNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLT 90
Y W +D+ +L +LSS+ +++ + N S W L++M++S +RAR ++ + L
Sbjct: 75 YGRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALA 134
Query: 91 RTSKGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENA 150
T KG+ SV+EY ++ +DEL KP+DD++ V GL +F + A+ R +
Sbjct: 135 TTKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDP 194
Query: 151 IAFDELHDILVDHET--FLQRDQEPTIIPTAQVAY------------------RGKPKYH 190
I +L+ L+ +E LQ + +A RG+ +
Sbjct: 195 ITPGDLYTQLLSYENRMHLQTGSSSLMQSSANARSPGRGMSWGRSGGRGFSRGRGRGRGP 254
Query: 191 KNGSFHNHINPSVNNISDSQGQQKQVMCQFCDKSGHTAKEC---YKIHGYPSKNGVRSAA 247
G F + + + + + CQ C + GHTA C + + P + SAA
Sbjct: 255 SRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRSANSAA 314
Query: 248 HSARYTPHTDETDWILDSGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVD--- 304
H + W D+GAT H+T +LD L + + Y G+D+II +G + IS++
Sbjct: 315 HQ-----NGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAI 369
Query: 305 ----------------PKTNKIYTSRH---------VVFHDNHFPYPTINQNAHAANLPI 339
P T+K S H + FH +HF A +
Sbjct: 370 VPTSSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKC 429
Query: 340 NISL--IPPHTILSLNPTIPPPQAP 362
L +PPH L L + P
Sbjct: 430 RDGLYPLPPHPDLRLKHNFSSTRVP 454
>pir||E71436 hypothetical protein - Arabidopsis thaliana
Length = 2088
Score = 554 bits (1427), Expect = e-156
Identities = 319/722 (44%), Positives = 425/722 (58%), Gaps = 114/722 (15%)
Query: 304 DPKTNKIYTSRHVVFHDNHFPYP-----------TINQNAHAANLPI--NISLIP----- 345
D + ++YTSRHVVF + FP+ T Q++ PI + S++P
Sbjct: 1399 DVEHKRLYTSRHVVFDEASFPFSNLTSQNSLPTVTFEQSSSPLVTPILSSSSVLPSCLSS 1458
Query: 346 PHTIL-SLNPTIPPPQAPNSLMATTPPTP------------------------EAILQEA 380
P T+L P + P +P+S TT P P E Q
Sbjct: 1459 PCTVLHQQQPPVTTPNSPHSSQPTTSPAPLSPHRSTTMDFQVPQPTAPNENGPEPEAQSP 1518
Query: 381 PL----------------SPSTSSGNESSPSPSP----------------TNNSIALTNP 408
P+ +P+ + NE P+P+P T S A P
Sbjct: 1519 PIGPLSNPTHEAFIGPLPNPNRNPTNEIEPTPAPHPKPVKPTTTTTTPNRTTVSDASHQP 1578
Query: 409 PADSNATNHIITRSQNNIFKPK-KFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFN 467
A +++ TR++NNI KP KF + P EP+NV QA++ WR A+S+EF+
Sbjct: 1579 TAPQQNQHNMKTRAKNNIKKPNTKFSLTATLPNRSPSEPTNVTQALKDKKWRFAMSDEFD 1638
Query: 468 ALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETF 527
A RN TW LVP +++ +V CKW+F++K P+G ID YKARLVAKGF Q GVD+ ETF
Sbjct: 1639 AQQRNHTWDLVPH-ESQLLVGCKWVFKLKYLPNGAIDKYKARLVAKGFNQQYGVDYAETF 1697
Query: 528 APVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCK 587
+PV++ TI+L+L +A+ K W++ QLDVNNAFLQG+L EEVYMAQPPG D +PT+VC+
Sbjct: 1698 SPVIKSTTIRLVLDVAVKKDWEIKQLDVNNAFLQGTLTEEVYMAQPPGFIDKDRPTHVCR 1757
Query: 588 LHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTG 647
L KAIYGL+QAPRAW+ LK + + GF S SD SLFIY S
Sbjct: 1758 LRKAIYGLKQAPRAWYMELKQHLFNIGFVNSLSDASLFIYWS------------------ 1799
Query: 648 NDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAA 707
D S + + SL+ RFS+K HYFLGIE +K L L Q K+I+D+L + +M A
Sbjct: 1800 -DKSSIDAVLTSLAERFSIKDPTDLHYFLGIEATRTKQGLHLMQRKYIKDLLAKHNMADA 1858
Query: 708 KPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTS 767
KP TPL T+ LTL+ GT D++ YR ++G+LQYL TRPD+++A+N+LSQ M +PT
Sbjct: 1859 KPVLTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAYAVNRLSQLMPQPTE 1918
Query: 768 LHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNP 827
H+Q KR+LRYL T + DW G+ DD ST+AY+IY G NP
Sbjct: 1919 DHWQAAKRVLRYLAGT------------------STHDWAGDSDDYVSTNAYVIYLGKNP 1960
Query: 828 ISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYL 887
ISW S+KQR VARSSTE+EYRAVA A +E+ W+ +LLS+LHI L P + CDN+GATYL
Sbjct: 1961 ISWSSKKQRGVARSSTESEYRAVANAASEVKWLCSLLSKLHIRLPIRPSIFCDNIGATYL 2020
Query: 888 CSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKM 947
C+NPV HS+MKHI++DYHFVR ++ G L+VSHVST+DQLAD LTKPL RA F+ R K+
Sbjct: 2021 CANPVFHSRMKHIAIDYHFVRNMIQSGALRVSHVSTRDQLADALTKPLSRAHFQSARFKI 2080
Query: 948 KV 949
V
Sbjct: 2081 GV 2082
Score = 153 bits (386), Expect = 3e-35
Identities = 91/331 (27%), Positives = 166/331 (49%), Gaps = 33/331 (9%)
Query: 2 VQFNALLIGYDLFGFVDGTKPEPA---------EKHVDYNYWRRQDKLILHAILSSVEAS 52
+Q +ALL GY+L G +DG+ PA + Y W+RQD+LI A++ ++
Sbjct: 728 IQIHALLDGYELAGHLDGSIETPAPTLTTNNVVSANPQYTLWKRQDRLIFSALIGAISPP 787
Query: 53 IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
+ ++ + W L +A + I L+ ++ + KG+K++ EY+ + + D+
Sbjct: 788 VQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKKGTKTIDEYVLSHTTLLDQ 847
Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
LAI+ KP++ ++ V GL ++K + + ++N + E+H+ L++HE L
Sbjct: 848 LAILGKPMEHEEQVERILEGLPEDYKTVVDQIEGKDNTPSITEIHERLINHEAKLLSTAA 907
Query: 173 PTIIPTAQVAYRGKPKYHKN-------------GSFHNHINPSVNNISDSQGQQKQV-MC 218
+ A + ++H N ++ N+ PS NN S + + + C
Sbjct: 908 LSSSSLPMSANVAQQRHHNNNRNNNQNKNRTQGNTYTNNWQPSANNKSGQRPFKPYLGKC 967
Query: 219 QFCDKSGHTAKECYKIHG-YPSKNGVRSA-------AHSARYTPHTDETDWILDSGATHH 270
Q C+ GH+A+ C ++ PS + S A+ A P+T +W+LDSGATHH
Sbjct: 968 QICNVQGHSARRCPQLQAMQPSSSSSASTFTPWQPRANLAMGAPYT-ANNWLLDSGATHH 1026
Query: 271 LTNNLDDLHITNPYHGSDKIIIGDGNTLPIS 301
+T++L+ L + PY+G D ++I DG +L I+
Sbjct: 1027 ITSDLNALALHQPYNGDD-VMIADGTSLKIT 1056
>gb|AAC02672.1| polyprotein [Arabidopsis arenosa] gi|7522104|pir||T31353 polyprotein
- Arabidopsis arenosa Evelknievel retrotransposon
(fragment)
Length = 1390
Score = 548 bits (1412), Expect = e-154
Identities = 294/660 (44%), Positives = 412/660 (61%), Gaps = 64/660 (9%)
Query: 303 VDPKTNKIYTSRHVVFHDNHFPY------------PTINQNAHAANLPI----------- 339
+D T ++YTSRHV F ++ FP+ P ++Q+ ++PI
Sbjct: 731 LDRATGRVYTSRHVQFAESIFPFSTTSPSVTPPSDPPLSQDTRPISVPILARPLTTAPPS 790
Query: 340 NISLIPPHTILS----LNPTIP----PPQAPNSLMAT--------------------TPP 371
+ S PH S L+P+ P PP +P S + + +PP
Sbjct: 791 SPSCSAPHRSPSQPGILSPSAPFQPSPPSSPTSPITSPSLSEESHVGHNQETGPTGSSPP 850
Query: 372 TPEAILQEAPLSPSTSSGNESSPSP--SPTNNSIALTNPPADSNATN--------HII-T 420
E SP ++S +SP SP + + ALT P+ S N H + T
Sbjct: 851 VSPQPQSEQSTSPRSTSPQPNSPHTQHSPRSITPALTPSPSPSPPPNPNPPPPIQHTMRT 910
Query: 421 RSQNNIFKPK-KFFYASNHPLP-ENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLV 478
RS+NNI KP KF + P P + + P V +A+ P+WRQA+ +E NA RNGT+ LV
Sbjct: 911 RSKNNIVKPNPKFANLATKPTPLKPIIPKTVAEALLDPNWRQAMCDEINAQTRNGTFDLV 970
Query: 479 PPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKL 538
PP N+N++ CKW+F +K P+G +D YKARLVAKGF Q G DFKETF+PV++ T++
Sbjct: 971 PPAPNQNVIGCKWVFTLKYLPNGVLDRYKARLVAKGFHQQYGHDFKETFSPVIKSTTVRS 1030
Query: 539 ILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQA 598
+L +A++KGW + Q+DVNNAFLQG+L++EVY+ QPPG D P +VC+LHKA+YGL+QA
Sbjct: 1031 VLHVAVSKGWSIRQIDVNNAFLQGTLSDEVYVMQPPGFVDKDNPHHVCRLHKALYGLKQA 1090
Query: 599 PRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQ 658
PRAW+ L++++ + GF S +D SLF T+ Y LVYVDD+L+TG+D + + FI
Sbjct: 1091 PRAWYQELRSYLLTQGFVNSIADTSLFTLRHKRTILYVLVYVDDMLITGSDTNIITRFIA 1150
Query: 659 SLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTS 718
+L+ RFSLK +G YFLGIE + L L Q +++ D+L++ +M AA P TP+S T
Sbjct: 1151 NLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNMLAAHPVLTPMSPTP 1210
Query: 719 TLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLR 778
L+L GT + YR ++G+LQYL+ TRPD+++A+N+LSQ+MH PT LH+Q KR+LR
Sbjct: 1211 KLSLTSGTPLDKPSEYRAVLGSLQYLSFTRPDIAYAVNRLSQYMHCPTDLHWQAAKRILR 1270
Query: 779 YLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTV 838
YL T + GI ++ L L Y+DADW G+ D+ ST+AY++Y G PISW S+KQ V
Sbjct: 1271 YLAGTPSHGIFIRADTPLKLHAYSDADWAGDTDNYNSTNAYILYLGSTPISWSSKKQNGV 1330
Query: 839 ARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMK 898
ARSSTEAEYRAVA AT+EI W+ +LL+EL I LS PP++ CDNVGATYL +NPV S+MK
Sbjct: 1331 ARSSTEAEYRAVANATSEIRWVCSLLTELGITLSSPPVVYCDNVGATYLSANPVFDSRMK 1390
Score = 175 bits (443), Expect = 7e-42
Identities = 108/333 (32%), Positives = 171/333 (50%), Gaps = 34/333 (10%)
Query: 3 QFNALLIGYDLFGFVDGTKPEPAEKHV----------DYNYWRRQDKLILHAILSSVEAS 52
Q +ALL GYDL G+VDG+ P P DY W+RQDKL+ A+L ++ S
Sbjct: 43 QVHALLDGYDLAGYVDGSVPIPPPTRTTDDGVVTTNNDYTLWKRQDKLVYSALLGAISLS 102
Query: 53 IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
+ +L S + W+ L+ FA+ + A + L+++L + +KG+KSV Y Q D
Sbjct: 103 VQPLLSKANTSAEVWETLSSTFANPSWAHVQQLRQQLKQWTKGTKSVVTYFQGFTTRFDH 162
Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
LA++ K + ++ + GL ++K + + +REN A E+ + L++HE L E
Sbjct: 163 LALLGKAPEREEQIELILGGLPEDYKTVVDQIESRENPPALTEVLEKLINHEVKLAAKAE 222
Query: 173 PTI---IPTAQVAYRGKPKYH---KNGSFHNHINPSVNNISDSQGQQK------QVMCQF 220
T I V YRG + NG ++ N S N + +Q+ Q CQ
Sbjct: 223 ATSSVPITANAVNYRGNNNNNNSRSNGRNNSRGNTSWQNNQSTTNRQQYTPRPYQGKCQI 282
Query: 221 CDKSGHTAKECYKIH----GYPSKNGVRSA-------AHSARYTPHTDETDWILDSGATH 269
C GH+A+ C ++ Y S S+ A+ TP+ + +W+LDSGATH
Sbjct: 283 CSVHGHSARRCPQLQQHAGSYASNQSSSSSYAPWQPRANMVSATPY-NSGNWLLDSGATH 341
Query: 270 HLTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
HLT++L++L + PY+G +++ I DG+ LPISH
Sbjct: 342 HLTSDLNNLALHQPYNGGEEVTIADGSGLPISH 374
>ref|XP_507316.1| PREDICTED P0623F08.22 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 821
Score = 536 bits (1382), Expect = e-150
Identities = 266/589 (45%), Positives = 390/589 (66%), Gaps = 9/589 (1%)
Query: 370 PPTPEAILQEAPLSPSTSSGNESSPS---PSPTNNSIALTNPPADSNATNHII--TRSQN 424
P E ++Q +P + S++S + +S + T + T+ A I TR Q+
Sbjct: 224 PIQEEHLVQASPQTASSTSPSVASSAGVHDDVTTDQSDQTDQAMPEAAVAPIRPKTRLQS 283
Query: 425 NIFKPKKFFYASNHPL--PENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPK 482
I K K + + L + EP ++ +A+ + HW++A+ E+ ALI N TW LVPP K
Sbjct: 284 GIRKEKVYTDGTVKWLNFTSSGEPQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQK 343
Query: 483 NKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTI 542
+N++DCKW++++KR DG++D YKARLVAKGF Q G+D+++TF+PVV+ TI+++L++
Sbjct: 344 GRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSL 403
Query: 543 ALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAW 602
A+++GW + QLDV NAFL G L EEVYM QPPG + P YVCKL KA+YGL+QAPRAW
Sbjct: 404 AVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAW 463
Query: 603 HDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSN 662
+ L T ++ GF S++D SLF Y G + L+YVDD+++ + +Q LS
Sbjct: 464 YSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSK 523
Query: 663 RFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTL 722
F+LK +G HYFLGIE+ K L LSQ K+ D+L+R M KP TPLST+ L++
Sbjct: 524 DFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSV 583
Query: 723 NDGT--AAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYL 780
N+GT DST YR ++GALQYL LTRPD+SF+INK+ QF+H PT+ H+ +KR+LRY+
Sbjct: 584 NEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYV 643
Query: 781 KATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVAR 840
K T++ G+ + +L + ++DADW G+ DDR ST + ++ G N +SW +RKQ TV+R
Sbjct: 644 KYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSR 703
Query: 841 SSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHI 900
SSTEAEY+A+A ATAEIMW+ LL EL + + L CDN+GA YL +NP+ H++ KHI
Sbjct: 704 SSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHI 763
Query: 901 SLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
+D+HFVRE+V L+++++STKDQ+AD TK +P + E ++ + +
Sbjct: 764 EVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 812
Score = 37.0 bits (84), Expect = 3.2
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 307 TNKIYTSRHVVFHDNHFPYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAPNSLM 366
T ++Y SR V F ++ FP+ ++ NA A L ISL+PP + L+ N+ +
Sbjct: 89 TGRVYVSRDVTFDESIFPFSELHSNAGAC-LRAEISLLPPSLVPHLSSL---GGEQNNHV 144
Query: 367 ATTPP--TPEAILQEAPLSPSTSSGNESSPSPSPTNNSIALTNPPADSN 413
PP T + + A + + E + + + N+ A N A +
Sbjct: 145 LNYPPNVTDQFGEENAEIGEEIVANGEENAAAAADENAAAAANGGAQDD 193
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,760,998,755
Number of Sequences: 2540612
Number of extensions: 80190099
Number of successful extensions: 333282
Number of sequences better than 10.0: 2781
Number of HSP's better than 10.0 without gapping: 1762
Number of HSP's successfully gapped in prelim test: 1087
Number of HSP's that attempted gapping in prelim test: 316854
Number of HSP's gapped (non-prelim): 9522
length of query: 964
length of database: 863,360,394
effective HSP length: 138
effective length of query: 826
effective length of database: 512,755,938
effective search space: 423536404788
effective search space used: 423536404788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)
Medicago: description of AC146573.8