BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146571.3 + phase: 0
(444 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB81284.1| hypothetical protein [Arabidopsis thaliana] gi|4... 583 e-165
ref|XP_479413.1| unknown protein [Oryza sativa (japonica cultiva... 501 e-140
ref|NP_969184.1| putative RNA pseudouridylate synthase [Bdellovi... 117 9e-25
ref|YP_169130.1| ribosomal large subunit pseudouridine synthase ... 60 1e-07
gb|AAV29673.1| NT02FT1763 [synthetic construct] 60 1e-07
ref|NP_965486.1| hypothetical protein LJ1679 [Lactobacillus john... 60 2e-07
gb|AAB96191.1| similar to RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE ... 58 7e-07
ref|ZP_00063257.1| COG0564: Pseudouridylate synthases, 23S RNA-s... 57 9e-07
ref|NP_878700.1| ribosomal large subunit pseudouridine synthase ... 57 1e-06
ref|YP_115967.1| ribosomal large subunit pseudouridine synthase ... 57 1e-06
ref|NP_779940.1| ribosomal large subunit pseudouridine synthase ... 56 2e-06
dbj|BAB71059.1| unnamed protein product [Homo sapiens] gi|233086... 56 3e-06
gb|AAH16967.1| C18B11 protein [Homo sapiens] 56 3e-06
gb|AAH07697.1| RPUSD2 protein [Homo sapiens] 56 3e-06
ref|YP_078187.1| Pseudouridine synthase [Bacillus licheniformis ... 55 3e-06
ref|XP_544620.1| PREDICTED: similar to C15orf19 protein [Canis f... 55 4e-06
ref|NP_777935.1| ribosomal large subunit pseudouridine synthase ... 55 4e-06
ref|YP_191234.1| Ribosomal large subunit pseudouridine synthase ... 55 4e-06
ref|YP_114042.1| ribosomal large subunit pseudouridine synthase ... 54 1e-05
ref|XP_583460.1| PREDICTED: similar to RNA pseudouridylate synth... 54 1e-05
>emb|CAB81284.1| hypothetical protein [Arabidopsis thaliana]
gi|4455285|emb|CAB36821.1| hypothetical protein
[Arabidopsis thaliana] gi|23296381|gb|AAN13057.1|
unknown protein [Arabidopsis thaliana]
gi|15234586|ref|NP_193908.1| pseudouridine synthase
family protein [Arabidopsis thaliana]
gi|7485646|pir||T05852 hypothetical protein F17L22.230 -
Arabidopsis thaliana
Length = 472
Score = 583 bits (1504), Expect = e-165
Identities = 273/399 (68%), Positives = 332/399 (82%), Gaps = 8/399 (2%)
Query: 51 YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVL-QYICKALDLPHLFVADLIQFGAVYFALV 109
Y +Y+RL+PCP++ +PPRIEH+VV ++ ++ ++I K LDLP L+VADLI+FGAV++ALV
Sbjct: 73 YHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALV 132
Query: 110 SPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQFVEPGTYLRV 169
P+PPPTAT E+I +FE+VT P VL+KRSS+KGKT+REAQKTFRVT NQ+ E GTYLRV
Sbjct: 133 CPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRV 192
Query: 170 HVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTFATRALGLTT 229
HVHPKR PRCYEIDW+SRI+AV +SYV+LDKPAGT+VG TT NIEESC TFA+RAL L
Sbjct: 193 HVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPE 252
Query: 230 PLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRP 289
PL TTHQIDNCTEGCVV AR KEYCSVFH KIR K+VKK+Y ALAA+PLPIGII HYMRP
Sbjct: 253 PLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPLPIGIISHYMRP 312
Query: 290 TNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEY----CGWPSQDYAYECKINL 345
N APRL++ED I+GWH+CQLEV++C+KIPWP + ++ CGW S+++AYEC INL
Sbjct: 313 KNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINL 372
Query: 346 LTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYNKDFS-SESEKKTAVI 404
LTG+THQIRAQ AAC AP++GD+MYMPAAIAEM NP NP+GK K ++ E++K+TAV
Sbjct: 373 LTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYTMEENQKETAVA 432
Query: 405 NWIAQHGKEPSVAIGLQACQISWDDD--EYIYRAGLPWW 441
WI +HGKEP V IGLQACQISWDDD E+ Y AG PWW
Sbjct: 433 EWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWW 471
>ref|XP_479413.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|34395182|dbj|BAC83571.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 400
Score = 501 bits (1289), Expect = e-140
Identities = 230/350 (65%), Positives = 284/350 (80%), Gaps = 6/350 (1%)
Query: 98 LIQFGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDA 157
LI+FGAVY+ALV+P+PPP A E +RIF +VTEP VL +R S+KGKT+REAQKTFRVTD
Sbjct: 41 LIKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDP 100
Query: 158 NQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESC 217
NQ +E GTYLRVHVHPKRFPRCYEIDW+SR+IAV ++YVVLDKPA TSVG T NIEESC
Sbjct: 101 NQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESC 160
Query: 218 VTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASP 277
V F +RALGL TPL+TTHQIDNC+EGCVVL++ KE+CSVFH IREK+V K YLAL +P
Sbjct: 161 VVFTSRALGLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAP 220
Query: 278 LPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQD----EYCGWP 333
+ GII HYMRP N APRL+SED IKGWH+CQ+E++DC+K+PWP+ +++ + CGWP
Sbjct: 221 VSTGIITHYMRPINRAPRLVSEDHIKGWHVCQMEILDCKKVPWPSSLIRKVHKVDNCGWP 280
Query: 334 SQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYNKDF 393
Q+ AYECKINLLTG+THQIRAQ AA PI+GD+ YM AA+A ++NP +NPFG++ +++
Sbjct: 281 QQEAAYECKINLLTGKTHQIRAQLAAIGTPIVGDSAYMTAAMAAIVNPSINPFGRWGQNY 340
Query: 394 SSESEKKTAVINWIAQHGKEPSVAIGLQACQISWD--DDEYIYRAGLPWW 441
SE EK AV WI+ HGKEP IGLQA +ISWD + + Y+AG+PWW
Sbjct: 341 DSEDEKAAAVEAWISCHGKEPKSVIGLQASEISWDYEGEHHSYKAGVPWW 390
>ref|NP_969184.1| putative RNA pseudouridylate synthase [Bdellovibrio bacteriovorus
HD100] gi|39576011|emb|CAE80177.1| putative RNA
pseudouridylate synthase [Bdellovibrio bacteriovorus
HD100]
Length = 283
Score = 117 bits (292), Expect = 9e-25
Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 20/217 (9%)
Query: 155 TDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIE 214
T + V G Y+RVH P+RF + WRSRI+ E +VV +K +G V + N+
Sbjct: 53 TTEDSSVSVGDYIRVHTKPRRFT-ANDGQWRSRIVFENEHFVVTNKISGLPVHASVDNLH 111
Query: 215 ESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLA-L 273
E+ ++ + L + TH++D T G +V A++ E+ + F+ + +++ KIY A +
Sbjct: 112 ENLQSYLQQTLHQN--VYVTHRLDVPTRGLIVYAKSPEFQTEFNKLLIAREMNKIYRARV 169
Query: 274 AASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYCGWP 333
L G+++HYM P+ AP+++S++ W C LE+++ K+
Sbjct: 170 QGHSLSTGLLQHYMEPSPRAPKVVSKELQPKWQECLLEILEFSKL--------------- 214
Query: 334 SQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMY 370
++ E +I L TGRTHQIRAQ +A PI+GD Y
Sbjct: 215 -ENEMSEVRIKLHTGRTHQIRAQLSAEGHPIVGDVAY 250
>ref|YP_169130.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis Schu 4]
gi|56603726|emb|CAG44688.1| ribosomal large subunit
pseudouridine synthase C [Francisella tularensis subsp.
tularensis SCHU S4]
Length = 309
Score = 60.5 bits (145), Expect = 1e-07
Identities = 56/225 (24%), Positives = 94/225 (40%), Gaps = 14/225 (6%)
Query: 146 REAQKTFRVTDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTS 205
+ ++T RV+ + P L P + + + RI+ + Y+++DKP+G +
Sbjct: 48 KRVKQTSRVSAGDIVRVPPFSLEEDSKPIKISQSHLDFLEQRILYENDDYIIVDKPSGMA 107
Query: 206 VGETTGNIEESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKK 265
V +G + V + L H++D T GCV+LA+ F +++K
Sbjct: 108 VHGGSG-VNSGLVERLRQLRPKVRRLDLVHRLDKETSGCVLLAKKHSSLVYFFDIFKQRK 166
Query: 266 VKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVV 325
V KIY A+ IIK + T + G + +++ D ++ I V
Sbjct: 167 VDKIYYAIVHGHWDKKIIKIDLPLKRTETK-------DGQRVVKVDSKDGKQALTRIISV 219
Query: 326 QDEYCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMY 370
+ G+ +I L TGRTHQIR A PI+ D Y
Sbjct: 220 RHLQGGFSL------LEIKLETGRTHQIRVHTKAMGHPIVADKKY 258
>gb|AAV29673.1| NT02FT1763 [synthetic construct]
Length = 309
Score = 60.5 bits (145), Expect = 1e-07
Identities = 56/225 (24%), Positives = 94/225 (40%), Gaps = 14/225 (6%)
Query: 146 REAQKTFRVTDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTS 205
+ ++T RV+ + P L P + + + RI+ + Y+++DKP+G +
Sbjct: 48 KRVKQTSRVSAGDIVRVPPFSLEEDSKPIKISQSHLDFLEQRILYENDDYIIVDKPSGMA 107
Query: 206 VGETTGNIEESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKK 265
V +G + V + L H++D T GCV+LA+ F +++K
Sbjct: 108 VHGGSG-VNSGLVERLRQLRPKVRRLDLVHRLDKETSGCVLLAKKHSSLVYFFDIFKQRK 166
Query: 266 VKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVV 325
V KIY A+ IIK + T + G + +++ D ++ I V
Sbjct: 167 VDKIYYAIVHGHWDKKIIKIDLPLKRTETK-------DGQRVVKVDSKDGKQALTRIISV 219
Query: 326 QDEYCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMY 370
+ G+ +I L TGRTHQIR A PI+ D Y
Sbjct: 220 RHLQGGFSL------LEIKLETGRTHQIRVHTKAMGHPIVADKKY 258
>ref|NP_965486.1| hypothetical protein LJ1679 [Lactobacillus johnsonii NCC 533]
gi|41583845|gb|AAS09452.1| hypothetical protein LJ1679
[Lactobacillus johnsonii NCC 533]
Length = 282
Score = 59.7 bits (143), Expect = 2e-07
Identities = 61/228 (26%), Positives = 104/228 (44%), Gaps = 41/228 (17%)
Query: 158 NQFVEPGTYLRVHV-HPKRFPRCYEIDWR-SRIIAVEESYVVLDKPAGTSVGETTGNIEE 215
N V+PG + + + H + + Y + +++ + +V++KPAG N E+
Sbjct: 52 NFLVKPGDKIEIQLDHIESDQQPYPASGKLPKVVYEDNDILVINKPAGQKTHPNL-NEED 110
Query: 216 SCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLA-LA 274
+ + LG + ++ H++D T G +++A+N + + ++ +K + + YLA ++
Sbjct: 111 TALNDCATYLGYSPFIV--HRLDMLTSGLLLVAKNPAVVPILNRQLTDKTLHREYLAWIS 168
Query: 275 ASP---------LPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVV 325
SP LPIG H R R++ +D K + EV+ K I+V
Sbjct: 169 NSPQIKNTGIIDLPIGHDPHDQRK-----RMVRQDGQKA--VTHYEVIKRDK---DRILV 218
Query: 326 QDEYCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPA 373
K+ L TGRTHQIR AA APIIGD +Y A
Sbjct: 219 ----------------KLTLETGRTHQIRVHLAALGAPIIGDPLYNSA 250
>gb|AAB96191.1| similar to RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D
[Mycoplasma pneumoniae M129]
gi|2501680|sp|P75485|Y292_MYCPN Hypothetical RNA
pseudouridine synthase MG209 homolog (RNA-uridine
isomerase) (RNA pseudouridylate synthase) (H10_orf309)
gi|13508031|ref|NP_109980.1| similar to RIBOSOMAL LARGE
SUBUNIT PSEUDOURIDINE SYNTHASE D [Mycoplasma pneumoniae
M129]
Length = 309
Score = 57.8 bits (138), Expect = 7e-07
Identities = 62/276 (22%), Positives = 108/276 (38%), Gaps = 42/276 (15%)
Query: 106 FALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQFVEPGT 165
F++ + + T A + + L++ S+ GK ++T V+P
Sbjct: 5 FSVTTAQRLDTFLATLLNLSRVKVAKLIVDGLVSVNGK---------KITKNGWLVQPED 55
Query: 166 YLRVHVHPKRFPRC----YEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTFA 221
+ V+ + F + D+ I+ +E +V++KP G T+ N ES + A
Sbjct: 56 RVHVNWSEELFEKVPVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAA 115
Query: 222 TRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIG 281
P+ H++D T G ++LA+N+ +++++ +K+ YLAL PL
Sbjct: 116 LFHCN-HQPVFLVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPL--- 171
Query: 282 IIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPW-------PAIVVQDEYCGWPS 334
D + G LE + K+ W A ++
Sbjct: 172 ------------------DSLSGTISAPLERVGNNKVMWKVGNSSNKAKNAFTKFTVLNQ 213
Query: 335 QDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMY 370
+ A K LLTGRTHQIR K P+ D +Y
Sbjct: 214 NEKAALIKCELLTGRTHQIRVHLQFIKHPVYNDPLY 249
>ref|ZP_00063257.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 299
Score = 57.4 bits (137), Expect = 9e-07
Identities = 57/195 (29%), Positives = 86/195 (43%), Gaps = 33/195 (16%)
Query: 188 IIAVEESYVVLDKPAG------------TSVGETTGNIEESCVTFATRALGLTTPLITTH 235
II E ++V+DKP G T V + G++E +A L ++T
Sbjct: 80 IIFENEHWLVVDKPYGITTVPGHADRLHTLVNQVKGHLE------TIKADDLVPHVVT-- 131
Query: 236 QIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRPTNTAPR 295
++D T G V+LA+++ +V ++++ V+K YLA P GI+ N
Sbjct: 132 RLDRDTSGIVLLAKHRFAHAVLDQQLQDHTVEKFYLAY-----PSGILADDHGDINAPIG 186
Query: 296 LISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYCGWPSQDYAYECKINLLTGRTHQIRA 355
+ D IK EV D K V+ Y + K+ L TGRTHQIR
Sbjct: 187 RMDGDFIKR------EVRDDGKPSRTEYWVERRY--EDDEQNMTRVKVQLHTGRTHQIRV 238
Query: 356 QFAACKAPIIGDTMY 370
FA P++GDT+Y
Sbjct: 239 HFANIGHPLVGDTLY 253
>ref|NP_878700.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Blochmannia floridanus] gi|33504213|emb|CAD83475.1|
ribosomal large subunit pseudouridine synthase C
[Candidatus Blochmannia floridanus]
Length = 322
Score = 57.0 bits (136), Expect = 1e-06
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 13/187 (6%)
Query: 185 RSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTFATRALGLTTPLI-TTHQIDNCTEG 243
++ +I +E +VL+KP+G SV N + + A R L + H++D T G
Sbjct: 91 QNTVIYEDEHLLVLNKPSGISVHGGGDNKLQLNIIDALRMLRPKIRFLWLVHRLDRDTSG 150
Query: 244 CVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEDCIK 303
+++A+++ H ++R +K++K YLA+ I + +AP +D IK
Sbjct: 151 LLLIAKSRIVLIKLHEQLRLQKIQKTYLAIVYGSWDTHIT------SISAPLFKKKDYIK 204
Query: 304 GWHICQLEVMDCRKIPWPAIVVQDEYCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAP 363
++ ++ K+ V++ + ++ A I +TGRTHQIR + P
Sbjct: 205 NINVVFID-SKFGKLAQTCFQVKERF-----KNIATLLNIIPITGRTHQIRVHTQYAQCP 258
Query: 364 IIGDTMY 370
IIGD +Y
Sbjct: 259 IIGDHVY 265
>ref|YP_115967.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyopneumoniae 232] gi|53987381|gb|AAV27582.1| ribosomal
large subunit pseudouridine synthase D [Mycoplasma
hyopneumoniae 232]
Length = 304
Score = 57.0 bits (136), Expect = 1e-06
Identities = 65/275 (23%), Positives = 118/275 (42%), Gaps = 61/275 (22%)
Query: 119 AEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQFVEPGTYLRV---HVHPKR 175
A+ + +V + L+L+K+ + + + NQ V+ G +R+ + PK
Sbjct: 23 AKLANLSRKVAQDLILEKKVLINNNLVLKK---------NQIVKTGQKIRIFNDYKRPKP 73
Query: 176 FPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTF------ATRALGLTT 229
EID+ II +++ ++++KP V GN + + V + L
Sbjct: 74 QLEPAEIDFE--IIFQDQNMILINKPKNLVVHPGVGNWKNTLVNGLISHFDSLEQLDHIR 131
Query: 230 PLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASP---------LPI 280
P I H++D T G +++A+N + S F ++ +++K+ Y A+ LPI
Sbjct: 132 PGIV-HRLDKDTTGLLLVAKNAKAHSFFVNELANRQIKRFYKAIVIGKVLHKFMKINLPI 190
Query: 281 GI-IKHYMRPT----NTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYCGWPSQ 335
G +K+ ++ T N+ P + + + IK + + +Q
Sbjct: 191 GRDLKNPLKKTISFFNSKPAITNVELIK-------------------------HFSYQNQ 225
Query: 336 DYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMY 370
D++ K L TGRTHQIR A PI GD +Y
Sbjct: 226 DFSL-VKCQLETGRTHQIRLHLAHIGYPIYGDPIY 259
>ref|NP_779940.1| ribosomal large subunit pseudouridine synthase D [Xylella
fastidiosa Temecula1] gi|28057741|gb|AAO29589.1|
ribosomal large subunit pseudouridine synthase D
[Xylella fastidiosa Temecula1]
gi|34395764|sp|Q87AR7|RLUD_XYLFT Ribosomal large subunit
pseudouridine synthase D (rRNA-uridine isomerase D)
(rRNA pseudouridylate synthase D)
Length = 331
Score = 56.2 bits (134), Expect = 2e-06
Identities = 50/186 (26%), Positives = 82/186 (43%), Gaps = 21/186 (11%)
Query: 188 IIAVEESYVVLDKPAGTSVGETTGNIEESCVTFATR---ALGLTTPLITTHQIDNCTEGC 244
I+ +E V++KPAG V GN + + V AL H++D T G
Sbjct: 92 ILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKDTSGV 151
Query: 245 VVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEDCIKG 304
+V+AR + + ++ ++V + YLA+ S L G + + RL
Sbjct: 152 MVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRL-------- 203
Query: 305 WHICQLEVMDCRKIPWPAIVVQDEYCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPI 364
++EV D K +++ + A EC+++ TGRTHQIR A + PI
Sbjct: 204 ----RMEVSDTGKEAVTHYRLRERF----RAHTALECRLD--TGRTHQIRVHMAHLRHPI 253
Query: 365 IGDTMY 370
+GD +Y
Sbjct: 254 VGDRLY 259
>dbj|BAB71059.1| unnamed protein product [Homo sapiens] gi|23308689|ref|NP_689473.1|
RNA pseudouridylate synthase domain containing 2 [Homo
sapiens]
Length = 545
Score = 55.8 bits (133), Expect = 3e-06
Identities = 57/221 (25%), Positives = 89/221 (39%), Gaps = 21/221 (9%)
Query: 154 VTDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNI 213
V D N ++ +LR VH P E R++A E VV+DKP+ V G
Sbjct: 194 VQDLNIVLKDNDFLRNTVHRHEPPVTAE---PIRLLAENEDVVVVDKPSSIPV-HPCGRF 249
Query: 214 EESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLAL 273
+ V F L H++D T G ++ A+ H ++R+++++K Y+
Sbjct: 250 RHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCR 309
Query: 274 AASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYCGWP 333
P + T P L+ + +C++ D R P + + Y G
Sbjct: 310 VEGEFPTEEV------TCKEPILVVSYKVG---VCRV---DPRGKPCETVFQRLSYNG-- 355
Query: 334 SQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAA 374
Q C+ LTGRTHQIR PI+ D +Y A
Sbjct: 356 -QSSVVRCRP--LTGRTHQIRVHLQFLGHPILNDPIYNSVA 393
>gb|AAH16967.1| C18B11 protein [Homo sapiens]
Length = 511
Score = 55.8 bits (133), Expect = 3e-06
Identities = 57/221 (25%), Positives = 89/221 (39%), Gaps = 21/221 (9%)
Query: 154 VTDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNI 213
V D N ++ +LR VH P E R++A E VV+DKP+ V G
Sbjct: 160 VQDLNIVLKDNDFLRNTVHRHEPPVTAE---PIRLLAENEDVVVVDKPSSIPV-HPCGRF 215
Query: 214 EESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLAL 273
+ V F L H++D T G ++ A+ H ++R+++++K Y+
Sbjct: 216 RHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCR 275
Query: 274 AASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYCGWP 333
P + T P L+ + +C++ D R P + + Y G
Sbjct: 276 VEGEFPTEEV------TCKEPILVVSYKVG---VCRV---DPRGKPCETVFQRLSYNG-- 321
Query: 334 SQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAA 374
Q C+ LTGRTHQIR PI+ D +Y A
Sbjct: 322 -QSSVVRCRP--LTGRTHQIRVHLQFLGHPILNDPIYNSVA 359
>gb|AAH07697.1| RPUSD2 protein [Homo sapiens]
Length = 554
Score = 55.8 bits (133), Expect = 3e-06
Identities = 57/221 (25%), Positives = 89/221 (39%), Gaps = 21/221 (9%)
Query: 154 VTDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNI 213
V D N ++ +LR VH P E R++A E VV+DKP+ V G
Sbjct: 203 VQDLNIVLKDNDFLRNTVHRHEPPVTAE---PIRLLAENEDVVVVDKPSSIPV-HPCGRF 258
Query: 214 EESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLAL 273
+ V F L H++D T G ++ A+ H ++R+++++K Y+
Sbjct: 259 RHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCR 318
Query: 274 AASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYCGWP 333
P + T P L+ + +C++ D R P + + Y G
Sbjct: 319 VEGEFPTEEV------TCKEPILVVSYKVG---VCRV---DPRGKPCETVFQRLSYNG-- 364
Query: 334 SQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAA 374
Q C+ LTGRTHQIR PI+ D +Y A
Sbjct: 365 -QSSVVRCRP--LTGRTHQIRVHLQFLGHPILNDPIYNSVA 402
>ref|YP_078187.1| Pseudouridine synthase [Bacillus licheniformis ATCC 14580]
gi|52002607|gb|AAU22549.1| Pseudouridine synthase
[Bacillus licheniformis ATCC 14580]
gi|52784756|ref|YP_090585.1| YhcT [Bacillus
licheniformis ATCC 14580] gi|52347258|gb|AAU39892.1|
YhcT [Bacillus licheniformis DSM 13]
Length = 305
Score = 55.5 bits (132), Expect = 3e-06
Identities = 48/187 (25%), Positives = 87/187 (45%), Gaps = 20/187 (10%)
Query: 188 IIAVEESYVVLDKPAGTSVGET----TGNIEESCVTFATRALGLTTPLITTHQIDNCTEG 243
++ ++ ++++KPAG + TG + + V F + G + H++D T G
Sbjct: 85 VLFEDDHMLIVNKPAGMATHPNEAGQTGTLS-NLVAFYFQMNGEERKVRHVHRLDKDTSG 143
Query: 244 CVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEDCIK 303
VV A+++ ++ +++ K++ + Y+A+A + + T T I D
Sbjct: 144 AVVFAKHRLAHALLDEQLQRKELARTYVAVAEGK--------FRKKTGTISAPIGRD--- 192
Query: 304 GWHICQLEVMDCRKIPWPAIVVQDEYCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAP 363
H + V + PA V E G+ S+ C++ L TGRTHQIR A+ P
Sbjct: 193 KHHPVRRRVSHSGQ---PA-VTHFESKGYDSRHDVTLCRLQLETGRTHQIRVHLASIGHP 248
Query: 364 IIGDTMY 370
+ GDT+Y
Sbjct: 249 LSGDTLY 255
>ref|XP_544620.1| PREDICTED: similar to C15orf19 protein [Canis familiaris]
Length = 688
Score = 55.1 bits (131), Expect = 4e-06
Identities = 56/221 (25%), Positives = 89/221 (39%), Gaps = 21/221 (9%)
Query: 154 VTDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNI 213
V D + ++ +LR VH P E R++A E VV+DKP+ V G
Sbjct: 337 VQDLSIMLKDNDFLRNRVHRHEPPVTAE---PVRLLAENEDVVVVDKPSSIPV-HPCGRF 392
Query: 214 EESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLAL 273
+ V F L H++D T G ++ A+ H ++R+++++K Y+
Sbjct: 393 RHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCR 452
Query: 274 AASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYCGWP 333
P + T P L+ + +C++ D R P + + Y G
Sbjct: 453 VEGEFPTEEV------TCKEPILVVSYKVG---VCRV---DTRGKPCETVFQRLSYNGHS 500
Query: 334 SQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAA 374
S C+ LTGRTHQIR PI+ D +Y A
Sbjct: 501 S---VVRCRP--LTGRTHQIRVHLQFLGHPILNDPIYNSVA 536
>ref|NP_777935.1| ribosomal large subunit pseudouridine synthase D [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|27904207|gb|AAO27040.1| ribosomal large subunit
pseudouridine synthase D [Buchnera aphidicola str. Bp
(Baizongia pistaciae)] gi|34395769|sp|Q89AH2|RLUC_BUCBP
Ribosomal large subunit pseudouridine synthase C
(rRNA-uridine isomerase C) (rRNA pseudouridylate
synthase C)
Length = 315
Score = 55.1 bits (131), Expect = 4e-06
Identities = 50/188 (26%), Positives = 83/188 (43%), Gaps = 21/188 (11%)
Query: 186 SRIIAVEESY-VVLDKPAGTSVGETTGNIEESCVTFATRALGLTTPLITTHQIDNCTEGC 244
+ +I E++Y ++L+KP+G SV +G I + L H++D T G
Sbjct: 92 NNMILYEDNYFLILNKPSGMSVHSGSG-INYGMIENLRILRPYNRYLDLVHRLDRDTSGV 150
Query: 245 VVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEDCIKG 304
+++A+ + H ++REKK+KK Y+AL P I+K +P L+ K
Sbjct: 151 LIIAKKRSILRNLHEQLREKKIKKKYVALVHGVWP-DILKSISKP------LLKTSSRKN 203
Query: 305 WHICQLEVMDCRKIPWPAIVVQDEYCGWPSQDYAYECKINL--LTGRTHQIRAQFAACKA 362
+I +++ I I + Y I++ +TGRTHQIR
Sbjct: 204 KNIVKIDPKGKESITHFNI----------KKKYTKNTLISITPITGRTHQIRVHLLHLNY 253
Query: 363 PIIGDTMY 370
PI+ D Y
Sbjct: 254 PIVLDAKY 261
>ref|YP_191234.1| Ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans 621H] gi|58001684|gb|AAW60578.1| Ribosomal large
subunit pseudouridine synthase A [Gluconobacter oxydans
621H]
Length = 265
Score = 55.1 bits (131), Expect = 4e-06
Identities = 58/195 (29%), Positives = 86/195 (43%), Gaps = 29/195 (14%)
Query: 195 YVVLDKPAGTSV--GETTGNIEESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKE 252
+++L KPAG +V G +T + E+ + R P + H++D T GC+++AR K
Sbjct: 55 FLILYKPAGLAVHPGPSTQDSVETRLLPHPRG----GPWLA-HRLDADTSGCLLVARRKT 109
Query: 253 YCSVFHCKIREKKVKKIYLALAASPLP--IGIIKHYMRPTNTAPRLISEDCIKGWHICQL 310
+E++ K+Y A+ LP G I AP L D GW +
Sbjct: 110 ALIEAQKAFQERQAHKLYWAVVVGDLPQDSGEID--------APLLRQSDA-SGWRMVVD 160
Query: 311 EVMDCRKIPWPAIVVQDEYCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMY 370
D + W + C W ++ LLTGRTHQ R A PI+GD +Y
Sbjct: 161 AKGDEARTRWRVLGRSKGLC-W--------VELELLTGRTHQARIHCAELGTPILGDPVY 211
Query: 371 -MPAAIAEMINPGLN 384
MPA + PGL+
Sbjct: 212 GMPAPDGSAL-PGLH 225
>ref|YP_114042.1| ribosomal large subunit pseudouridine synthase A [Methylococcus
capsulatus str. Bath] gi|53757829|gb|AAU92120.1|
ribosomal large subunit pseudouridine synthase A
[Methylococcus capsulatus str. Bath]
Length = 212
Score = 53.9 bits (128), Expect = 1e-05
Identities = 48/194 (24%), Positives = 79/194 (39%), Gaps = 34/194 (17%)
Query: 188 IIAVEESYVVLDKPAGTSVGETTGNIEESCVTFATRALGLTTPLITTHQIDNCTEGCVVL 247
++ + + +VL KP+G G ++ C++ RA + H++D T G +V+
Sbjct: 4 VVHTDAALLVLSKPSGLLAVPGRGQDKQDCLSARVRAR--YPDALVVHRLDMATSGLMVM 61
Query: 248 ARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHI 307
AR + ++V K Y AL L T P + GW
Sbjct: 62 ARGIAVQRILSQSFARREVLKRYEALVHGVL------------ETPP-----ETENGWSS 104
Query: 308 CQLEVMDCRKIPWPAIVVQ--DEYCGWPS---------QDYAYECKINLLTGRTHQIRAQ 356
L ++ WP +Q D G PS +D A ++ +TGR+HQ+R
Sbjct: 105 IDLPLLS----DWPNRPLQKVDPLHGKPSLTRWRILGHEDGATRVELEPVTGRSHQLRVH 160
Query: 357 FAACKAPIIGDTMY 370
AA P++GD +Y
Sbjct: 161 LAALGYPVLGDPLY 174
>ref|XP_583460.1| PREDICTED: similar to RNA pseudouridylate synthase domain
containing 2 [Bos taurus]
Length = 518
Score = 53.9 bits (128), Expect = 1e-05
Identities = 56/221 (25%), Positives = 91/221 (40%), Gaps = 21/221 (9%)
Query: 154 VTDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNI 213
V D + ++ +LR VH P E R++A E VV+DKP+ V G
Sbjct: 167 VQDLSIVLKDNDFLRNTVHRHEPPVTAE---PIRLLAENEDVVVVDKPSSIPV-HPCGRF 222
Query: 214 EESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLAL 273
+ V F L H++D T G ++ A+ H ++R+++++K Y+
Sbjct: 223 RHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCR 282
Query: 274 AASPLPIGIIKHYMRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYCGWP 333
P + T P L+ + +C++ D + P ++ + Y G
Sbjct: 283 VVGEFPTEEV------TCKEPILVVSYKVG---VCRV---DPQGKPCESVFQRLSYNGHS 330
Query: 334 SQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAA 374
S C+ LTGRTHQIR PI+ D +Y AA
Sbjct: 331 S---VVRCRP--LTGRTHQIRVHLQFLGHPILNDPIYNSAA 366
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,825,946
Number of Sequences: 2540612
Number of extensions: 34326463
Number of successful extensions: 66125
Number of sequences better than 10.0: 570
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 65289
Number of HSP's gapped (non-prelim): 967
length of query: 444
length of database: 863,360,394
effective HSP length: 131
effective length of query: 313
effective length of database: 530,540,222
effective search space: 166059089486
effective search space used: 166059089486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)
Medicago: description of AC146571.3