
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146568.9 + phase: 0 /pseudo
(19 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD34458.1| Skp1 [Medicago sativa] 33 1.7
emb|CAB87834.1| putative kinetochore protein [Vicia faba] 32 5.0
dbj|BAB08452.1| UIP2 [Arabidopsis thaliana] gi|28466911|gb|AAO44... 31 8.5
gb|AAC63110.1| UIP2 [Arabidopsis thaliana] 31 8.5
>gb|AAD34458.1| Skp1 [Medicago sativa]
Length = 153
Score = 33.5 bits (75), Expect = 1.7
Identities = 15/16 (93%), Positives = 16/16 (99%)
Query: 4 STRKITLKSSDGETFE 19
+TRKITLKSSDGETFE
Sbjct: 1 TTRKITLKSSDGETFE 16
>emb|CAB87834.1| putative kinetochore protein [Vicia faba]
Length = 124
Score = 32.0 bits (71), Expect = 5.0
Identities = 14/17 (82%), Positives = 16/17 (93%)
Query: 3 SSTRKITLKSSDGETFE 19
+ST+KITLKSSDGE FE
Sbjct: 2 ASTKKITLKSSDGEAFE 18
>dbj|BAB08452.1| UIP2 [Arabidopsis thaliana] gi|28466911|gb|AAO44064.1| At5g42190
[Arabidopsis thaliana] gi|3068809|gb|AAC14445.1| Skp1
homolog [Arabidopsis thaliana]
gi|18422184|ref|NP_568603.1| E3 ubiquitin ligase SCF
complex subunit SKP1/ASK1 (At2) / UFO-binding protein
(UIP2) [Arabidopsis thaliana]
Length = 171
Score = 31.2 bits (69), Expect = 8.5
Identities = 14/17 (82%), Positives = 15/17 (87%)
Query: 3 SSTRKITLKSSDGETFE 19
S+ RKITLKSSDGE FE
Sbjct: 2 STVRKITLKSSDGENFE 18
>gb|AAC63110.1| UIP2 [Arabidopsis thaliana]
Length = 172
Score = 31.2 bits (69), Expect = 8.5
Identities = 14/17 (82%), Positives = 15/17 (87%)
Query: 3 SSTRKITLKSSDGETFE 19
S+ RKITLKSSDGE FE
Sbjct: 3 STVRKITLKSSDGENFE 19
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.298 0.112 0.266
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,861,430
Number of Sequences: 2540612
Number of extensions: 124944
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 4
length of query: 19
length of database: 863,360,394
effective HSP length: 0
effective length of query: 24
effective length of database: 863,360,394
effective search space: 20720649456
effective search space used: 20720649456
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC146568.9