Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146568.9 + phase: 0 /pseudo
         (19 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD34458.1| Skp1 [Medicago sativa]                                  33  1.7
emb|CAB87834.1| putative kinetochore protein [Vicia faba]              32  5.0
dbj|BAB08452.1| UIP2 [Arabidopsis thaliana] gi|28466911|gb|AAO44...    31  8.5
gb|AAC63110.1| UIP2 [Arabidopsis thaliana]                             31  8.5

>gb|AAD34458.1| Skp1 [Medicago sativa]
          Length = 153

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 15/16 (93%), Positives = 16/16 (99%)

Query: 4  STRKITLKSSDGETFE 19
          +TRKITLKSSDGETFE
Sbjct: 1  TTRKITLKSSDGETFE 16


>emb|CAB87834.1| putative kinetochore protein [Vicia faba]
          Length = 124

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 14/17 (82%), Positives = 16/17 (93%)

Query: 3  SSTRKITLKSSDGETFE 19
          +ST+KITLKSSDGE FE
Sbjct: 2  ASTKKITLKSSDGEAFE 18


>dbj|BAB08452.1| UIP2 [Arabidopsis thaliana] gi|28466911|gb|AAO44064.1| At5g42190
          [Arabidopsis thaliana] gi|3068809|gb|AAC14445.1| Skp1
          homolog [Arabidopsis thaliana]
          gi|18422184|ref|NP_568603.1| E3 ubiquitin ligase SCF
          complex subunit SKP1/ASK1 (At2) / UFO-binding protein
          (UIP2) [Arabidopsis thaliana]
          Length = 171

 Score = 31.2 bits (69), Expect = 8.5
 Identities = 14/17 (82%), Positives = 15/17 (87%)

Query: 3  SSTRKITLKSSDGETFE 19
          S+ RKITLKSSDGE FE
Sbjct: 2  STVRKITLKSSDGENFE 18


>gb|AAC63110.1| UIP2 [Arabidopsis thaliana]
          Length = 172

 Score = 31.2 bits (69), Expect = 8.5
 Identities = 14/17 (82%), Positives = 15/17 (87%)

Query: 3  SSTRKITLKSSDGETFE 19
          S+ RKITLKSSDGE FE
Sbjct: 3  STVRKITLKSSDGENFE 19


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.298    0.112    0.266 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,861,430
Number of Sequences: 2540612
Number of extensions: 124944
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 4
length of query: 19
length of database: 863,360,394
effective HSP length: 0
effective length of query: 24
effective length of database: 863,360,394
effective search space: 20720649456
effective search space used: 20720649456
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 69 (31.2 bits)


Medicago: description of AC146568.9