BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146567.9 + phase: 0
(80 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sati... 134 6e-31
ref|NP_915643.1| P0505D12.24 [Oryza sativa (japonica cultivar-gr... 134 8e-31
gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana] gi|1522376... 127 7e-29
gb|AAG50100.1| unknown protein [Arabidopsis thaliana] gi|1521816... 125 4e-28
ref|XP_533728.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 117 6e-26
ref|XP_533837.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 115 3e-25
ref|NP_080585.1| LSM3 homolog, U6 small nuclear RNA associated [... 114 5e-25
ref|XP_414380.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 114 5e-25
emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis] 114 6e-25
ref|XP_534071.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 112 2e-24
ref|XP_539397.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 110 9e-24
gb|EAL27937.1| GA16073-PA [Drosophila pseudoobscura] 110 9e-24
gb|AAN13967.1| CG31184-PA [Drosophila melanogaster] gi|24649486|... 109 2e-23
gb|AAN71307.1| RE11655p [Drosophila melanogaster] 109 2e-23
ref|XP_321595.2| ENSANGP00000011793 [Anopheles gambiae str. PEST... 108 3e-23
gb|AAO50813.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 107 1e-22
ref|XP_642965.1| hypothetical protein DDB0217913 [Dictyostelium ... 107 1e-22
emb|CAE58609.1| Hypothetical protein CBG01776 [Caenorhabditis br... 100 2e-20
emb|CAB60606.2| Hypothetical protein Y62E10A.12 [Caenorhabditis ... 99 3e-20
ref|XP_523516.1| PREDICTED: similar to U6 snRNA-associated Sm-li... 99 4e-20
>dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa (japonica
cultivar-group)]
Length = 104
Score = 134 bits (337), Expect = 6e-31
Identities = 68/73 (93%), Positives = 69/73 (94%)
Query: 2 AGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
A EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 8 AAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 67
Query: 62 IDDETYEEIVRVS 74
IDDETYEEIVR +
Sbjct: 68 IDDETYEEIVRTT 80
>ref|NP_915643.1| P0505D12.24 [Oryza sativa (japonica cultivar-group)]
Length = 188
Score = 134 bits (336), Expect = 8e-31
Identities = 68/71 (95%), Positives = 68/71 (95%)
Query: 2 AGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
A EEE AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 8 AAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 67
Query: 62 IDDETYEEIVR 72
IDDETYEEIVR
Sbjct: 68 IDDETYEEIVR 78
>gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|15223768|ref|NP_177812.1| small nuclear
ribonucleoprotein, putative / snRNP, putative / Sm
protein, putative [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1| Sm-like protein [Arabidopsis
thaliana] gi|25406475|pir||D96797 Sm-like protein
[imported] - Arabidopsis thaliana
Length = 98
Score = 127 bits (319), Expect = 7e-29
Identities = 62/70 (88%), Positives = 67/70 (95%)
Query: 5 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDD 64
EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVEIDD
Sbjct: 4 EEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDD 63
Query: 65 ETYEEIVRVS 74
ETYEEIVR +
Sbjct: 64 ETYEEIVRTT 73
>gb|AAG50100.1| unknown protein [Arabidopsis thaliana]
gi|15218164|ref|NP_173542.1| small nuclear
ribonucleoprotein, putative / snRNP, putative / Sm
protein, putative [Arabidopsis thaliana]
gi|25518100|pir||B86345 F16F4.12 protein - Arabidopsis
thaliana gi|8920641|gb|AAF81363.1| Contains similarity
to Lsm3 protein from Homo sapiens gb|AJ238095 and
contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene. [Arabidopsis
thaliana]
Length = 97
Score = 125 bits (313), Expect = 4e-28
Identities = 58/70 (82%), Positives = 68/70 (96%)
Query: 5 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDD 64
EE++ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+EIDD
Sbjct: 4 EEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDD 63
Query: 65 ETYEEIVRVS 74
ETYEEIVR +
Sbjct: 64 ETYEEIVRTT 73
>ref|XP_533728.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Canis familiaris]
Length = 124
Score = 117 bits (294), Expect = 6e-26
Identities = 56/67 (83%), Positives = 64/67 (94%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 68 EEIVRVS 74
EEI +VS
Sbjct: 72 EEIYKVS 78
>ref|XP_533837.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Canis familiaris]
Length = 102
Score = 115 bits (288), Expect = 3e-25
Identities = 55/65 (84%), Positives = 62/65 (94%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDLIRLSLDERIYVKLR+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKLRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 68 EEIVR 72
EEI +
Sbjct: 72 EEIYK 76
>ref|NP_080585.1| LSM3 homolog, U6 small nuclear RNA associated [Mus musculus]
gi|27712626|ref|XP_216220.1| PREDICTED: similar to LSM3
homolog, U6 small nuclear RNA associated [Rattus
norvegicus] gi|32484176|gb|AAH54368.1| Lsm3 protein
[Mus musculus] gi|5262856|emb|CAB45866.1| Lsm3 protein
[Homo sapiens] gi|38566272|gb|AAH62875.1| LSM3 homolog,
U6 small nuclear RNA associated [Mus musculus]
gi|13937895|gb|AAH07055.1| Lsm3 protein [Homo sapiens]
gi|61227725|sp|P62310|LSM3_HUMAN U6 snRNA-associated
Sm-like protein LSm3 gi|5919147|gb|AAD56227.1| U6
snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|55977170|sp|P62311|LSM3_MOUSE U6 snRNA-associated
Sm-like protein LSm3 gi|10197636|gb|AAG14954.1| MDS017
[Homo sapiens] gi|48146487|emb|CAG33466.1| LSM3 [Homo
sapiens] gi|12841666|dbj|BAB25303.1| unnamed protein
product [Mus musculus] gi|7657315|ref|NP_055278.1| Lsm3
protein [Homo sapiens] gi|12833592|dbj|BAB22585.1|
unnamed protein product [Mus musculus]
Length = 102
Score = 114 bits (286), Expect = 5e-25
Identities = 54/65 (83%), Positives = 62/65 (95%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 68 EEIVR 72
EEI +
Sbjct: 72 EEIYK 76
>ref|XP_414380.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Gallus gallus]
Length = 102
Score = 114 bits (286), Expect = 5e-25
Identities = 54/65 (83%), Positives = 62/65 (95%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 68 EEIVR 72
EEI +
Sbjct: 72 EEIYK 76
>emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 114 bits (285), Expect = 6e-25
Identities = 54/65 (83%), Positives = 62/65 (95%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTTVEID+ETY
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETY 71
Query: 68 EEIVR 72
EE+ +
Sbjct: 72 EELYK 76
>ref|XP_534071.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Canis familiaris]
Length = 102
Score = 112 bits (281), Expect = 2e-24
Identities = 53/65 (81%), Positives = 61/65 (93%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+E Y
Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEEAY 71
Query: 68 EEIVR 72
EEI +
Sbjct: 72 EEIYK 76
>ref|XP_539397.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Canis familiaris]
Length = 117
Score = 110 bits (275), Expect = 9e-24
Identities = 52/65 (80%), Positives = 61/65 (93%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDLIRLS DERIYVK+R+DREL+G+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEEPLDLIRLSPDERIYVKMRNDRELQGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 68 EEIVR 72
EEI +
Sbjct: 72 EEIYK 76
>gb|EAL27937.1| GA16073-PA [Drosophila pseudoobscura]
Length = 194
Score = 110 bits (275), Expect = 9e-24
Identities = 53/77 (68%), Positives = 65/77 (83%), Gaps = 6/77 (7%)
Query: 4 TEEESA------VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIV 57
TEEE VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE V
Sbjct: 3 TEEEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETV 62
Query: 58 TTVEIDDETYEEIVRVS 74
TTVEID+ETYEE+ + +
Sbjct: 63 TTVEIDEETYEEVYKTT 79
>gb|AAN13967.1| CG31184-PA [Drosophila melanogaster] gi|24649486|ref|NP_732931.1|
CG31184-PA [Drosophila melanogaster]
Length = 103
Score = 109 bits (273), Expect = 2e-23
Identities = 49/65 (75%), Positives = 61/65 (93%)
Query: 10 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEE 69
VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYEE
Sbjct: 15 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEE 74
Query: 70 IVRVS 74
+ + +
Sbjct: 75 VYKTA 79
>gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 109 bits (273), Expect = 2e-23
Identities = 49/65 (75%), Positives = 61/65 (93%)
Query: 10 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEE 69
VKEPLDLIRLSLDE++YVK+R++RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYEE
Sbjct: 15 VKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEE 74
Query: 70 IVRVS 74
+ + +
Sbjct: 75 VYKTA 79
>ref|XP_321595.2| ENSANGP00000011793 [Anopheles gambiae str. PEST]
gi|55233815|gb|EAA00883.2| ENSANGP00000011793
[Anopheles gambiae str. PEST]
Length = 92
Score = 108 bits (271), Expect = 3e-23
Identities = 50/65 (76%), Positives = 60/65 (91%)
Query: 10 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEE 69
VKEPLDLIRLSLDE+IYVK+R +RELRG+LHA+DQHLNM+LGD EE VTTVEID+ETYEE
Sbjct: 4 VKEPLDLIRLSLDEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEE 63
Query: 70 IVRVS 74
+ + +
Sbjct: 64 VYKTT 68
>gb|AAO50813.1| similar to Arabidopsis thaliana (Mouse-ear cress). Sm-like
protein [Dictyostelium discoideum]
Length = 98
Score = 107 bits (266), Expect = 1e-22
Identities = 52/67 (77%), Positives = 58/67 (85%)
Query: 6 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDE 65
EE V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE D+E
Sbjct: 5 EEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEE 64
Query: 66 TYEEIVR 72
T EEI+R
Sbjct: 65 TDEEIIR 71
>ref|XP_642965.1| hypothetical protein DDB0217913 [Dictyostelium discoideum]
gi|60471085|gb|EAL69055.1| hypothetical protein
DDB0217913 [Dictyostelium discoideum]
Length = 101
Score = 107 bits (266), Expect = 1e-22
Identities = 52/67 (77%), Positives = 58/67 (85%)
Query: 6 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDE 65
EE V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DVEE + VE D+E
Sbjct: 5 EEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEE 64
Query: 66 TYEEIVR 72
T EEI+R
Sbjct: 65 TDEEIIR 71
>emb|CAE58609.1| Hypothetical protein CBG01776 [Caenorhabditis briggsae]
Length = 102
Score = 99.8 bits (247), Expect = 2e-20
Identities = 44/67 (65%), Positives = 60/67 (88%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDL+RLSLDE++YVK+R+DRELRG+L A+DQHLNM+L +VEE +TT E+D++T+
Sbjct: 12 ATVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTF 71
Query: 68 EEIVRVS 74
EEI R S
Sbjct: 72 EEIYRQS 78
>emb|CAB60606.2| Hypothetical protein Y62E10A.12 [Caenorhabditis elegans]
gi|17543872|ref|NP_502579.1| sm like protein, U6
snRNA-associated Sm-like protein (lsm-3)
[Caenorhabditis elegans]
Length = 102
Score = 99.0 bits (245), Expect = 3e-20
Identities = 43/65 (66%), Positives = 59/65 (90%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V+EPLDL+RLSLDER+YVK+R+DRELRG+L A+DQHLNM+L +VEE +TT E+D++T+
Sbjct: 12 ATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTF 71
Query: 68 EEIVR 72
EEI +
Sbjct: 72 EEIYK 76
>ref|XP_523516.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
(MDS017) [Pan troglodytes]
Length = 135
Score = 98.6 bits (244), Expect = 4e-20
Identities = 47/62 (75%), Positives = 57/62 (91%), Gaps = 1/62 (1%)
Query: 8 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 67
+ V++PLDL RL+ +ERIYVK+R+DRELRG+LH YDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12 NTVEDPLDL-RLTPEERIYVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIEIDEETY 70
Query: 68 EE 69
EE
Sbjct: 71 EE 72
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.134 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,838,461
Number of Sequences: 2540612
Number of extensions: 4321271
Number of successful extensions: 10309
Number of sequences better than 10.0: 284
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 10066
Number of HSP's gapped (non-prelim): 285
length of query: 80
length of database: 863,360,394
effective HSP length: 56
effective length of query: 24
effective length of database: 721,086,122
effective search space: 17306066928
effective search space used: 17306066928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146567.9