BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146565.8 - phase: 0 /pseudo
(1145 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 215 6e-54
gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|2540301... 204 1e-50
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 192 4e-47
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 192 5e-47
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 189 5e-46
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 187 2e-45
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 187 2e-45
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 183 3e-44
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 183 3e-44
gb|AAD32866.1| F14N23.4 [Arabidopsis thaliana] 183 3e-44
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 182 4e-44
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 181 1e-43
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 179 4e-43
gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [B... 179 6e-43
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 179 6e-43
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 177 2e-42
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 177 2e-42
emb|CAB79491.1| putative protein [Arabidopsis thaliana] gi|30467... 176 4e-42
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 174 1e-41
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 174 1e-41
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 215 bits (548), Expect = 6e-54
Identities = 156/542 (28%), Positives = 244/542 (44%), Gaps = 19/542 (3%)
Query: 3 MIVLYWNVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMISFSYVPSWYWHSIGVKKCCLN 62
M +L WN +G GN T L+ P IFL E +Y+ + H +G
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGH-LGFFDLHTV 59
Query: 63 NRGPRLPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSSVFLAAIYANTSYLFRRLLWAD 122
+ L +W D V + V+ + + I + WQ +L IY R LW
Sbjct: 60 EPIGKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDKEFYLTCIYGEPVQAERGELWER 119
Query: 123 LTHLQGCFLGPWLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTHLPSSGPLL 182
LT L GPW+ GDFN ++ EK G +SC +F N+ L + SG
Sbjct: 120 LTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQF 179
Query: 183 TWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVASVKNAI 242
+W R V RLDR++ N+ W+ + L + SDH PL+ + + +
Sbjct: 180 SWYGNR-NDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWA 238
Query: 243 SFKFYKAWTSHVDCRRLVLENWAKNVRGVGMVRLQGKLRILKTVFKQWNRSVFGDVDRQV 302
FK+ K W + L+ W++ + ++ K+ + +W R V
Sbjct: 239 GFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMME-KIASCRREISKWKR--VSKPSSAV 295
Query: 303 RLATDEVSRIQQIIDSVGFSDDLYRQDL-EAQLLLTNALNVQDQFWKEKSRHQSFIHGDR 361
R + +Q +D+ R++L + L+ N ++QFW+EKSR +GDR
Sbjct: 296 R-----IQELQFKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDR 350
Query: 362 NTAYFHRVARIKASSKNISLLYD--GATVLSDAGDIAAHILNYFQGIF--DVVNNCIPND 417
NT YFH + + + I L D G SD D+ YF+ +F + V +
Sbjct: 351 NTKYFHAATKNRRAQNRIQKLIDEEGREWTSDE-DLGRVAEAYFKKLFASEDVGYTVEE- 408
Query: 418 LVARSIHALVTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIVGSD 477
++ LV++ NN L+ ++E++ A F +N PGPDG G YQ FW+ +G
Sbjct: 409 --LENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQ 466
Query: 478 VVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILADRLA 537
+ VQ FF GS + +N + LIPKI A+ M DFRPI+L N +K++ K++A+RL
Sbjct: 467 ITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLK 526
Query: 538 SI 539
I
Sbjct: 527 KI 528
>gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|25403016|pir||D86384
unknown protein [imported] - Arabidopsis thaliana
Length = 1213
Score = 204 bits (519), Expect = 1e-50
Identities = 163/557 (29%), Positives = 264/557 (47%), Gaps = 48/557 (8%)
Query: 8 WNVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMISF--------SYVPSWYWHSIGVKKC 59
WN+RGF N+ + + + +NKP F + E + + +P W + V+
Sbjct: 8 WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSF----VENY 63
Query: 60 CLNNRGPRLPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSS--VFLAAIYANTSYLFRR 117
++ G +W +W+ V VVV+ S Q I EV S + ++ +YA R+
Sbjct: 64 AFSDLG----KIWVMWDPSVQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRK 119
Query: 118 LLWADLTHLQ-GCFLG--PWLFIGDFNAVMGAHEKRGRWPPTAASCS----DFGSWSNAN 170
LW ++ ++ +G PWL +GDFN V+ E P + + DF A
Sbjct: 120 ELWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSN---PVSLNVDINMRDFRDCLLAA 176
Query: 171 LLTHLPSSGPLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLL 230
L+ L G TW N + + VA ++DR + N+ W A + + SDH
Sbjct: 177 ELSDLRYKGNTFTWWN-KSHTTPVAKKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCG 235
Query: 231 LSADVASVKNAISFKFYKAWTSHVDCRRLVLENW-AKNVRGVGMVRLQGKLRILKTVFKQ 289
+ + S+K FKF+ ++D LV +NW NV G M R+ KL+ LK K
Sbjct: 236 VVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKD 295
Query: 290 WNRSVFGDVDRQVRLATDEVSRIQQ--IIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFW 347
++R + +++++ + A D + Q + D + +LEA+ ++ F+
Sbjct: 296 FSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASF---ELEAERKWHILTAAEESFF 352
Query: 348 KEKSRHQSFIHGDRNTAYFHRVARIKASSKNISLLYDGATVLSDAGD-IAAHILNYFQGI 406
++KSR F GD NT YFHR+A + SS +IS LYDG L D+ + I +YF +
Sbjct: 353 RQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSL 412
Query: 407 F-DVVNNCI--PND----LVARSIHALVTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGP 459
D V+ + ND L R A V E E+ ++I++A+F L + + GP
Sbjct: 413 LGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFS-----NEDIRAALFSLPRNKSCGP 467
Query: 460 DGFGGHFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIA 519
DGF F+ W IVG++V ++++FF G N+ +VLIPKI DFRPI+
Sbjct: 468 DGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPIS 527
Query: 520 LANFQFKIVTKILADRL 536
N +K++ ++L DRL
Sbjct: 528 CLNTLYKVIARLLTDRL 544
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 192 bits (489), Expect = 4e-47
Identities = 148/540 (27%), Positives = 246/540 (45%), Gaps = 19/540 (3%)
Query: 3 MIVLYWNVRGFG-NLDTKIA-LQNFYLSNKPTFIFLAEPM-ISFSYVPSWYWHSIGVKKC 59
M ++ WN +G G + D I L LS+ P +FL E S V W +G ++
Sbjct: 1 MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEW--LGYERV 58
Query: 60 CLNNRGPRLPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSSVFLAAIYANTSYLFRRLL 119
N L W V +V+ + I ++ + +++ +Y N ++ + L+
Sbjct: 59 FTVNPIGLSGGLALFWKKGVDIVIKYADKNLIDFQIQFGSHEFYVSCVYGNPAFSDKHLV 118
Query: 120 WADLTHLQGCFLGPWLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTHLPSSG 179
W +T + PW +GDFN ++ EKRG +S F ++ + LPS G
Sbjct: 119 WEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIG 178
Query: 180 PLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVASVK 239
TW G+ ++ RLDR N+ W F+ +++ L + SDH P+L+ +
Sbjct: 179 NPFTWG-GKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEE 237
Query: 240 NAISFKFYKAWTSHVDCRRLVLENWAKNVRGVGMVRLQGKLRILKTVFKQWNRSVFGDVD 299
+F+F K + + + +++ W + R ++ L KL+ ++ +W + +++
Sbjct: 238 YRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLD-KLKHCRSALSRWKKE--NNIN 294
Query: 300 RQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLL--LTNALNVQDQFWKEKSRHQSFI 357
R+ + ++ S GF R DL L L A + ++ FW +KSR +
Sbjct: 295 SSTRIT--QARAALELEQSSGFP----RADLVFSLKNDLCKANHDEEVFWSQKSRAKWMH 348
Query: 358 HGDRNTAYFHRVARIKASSKNISLLYD-GATVLSDAGDIAAHILNYFQGIFDVVNNCIPN 416
GD+NT++FH + ++I L D D + A YF +F +
Sbjct: 349 SGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFV 408
Query: 417 DLVARSIHALVTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIVGS 476
DL VTE NN LI ++EI+ AVF + APG DGF G F+Q +W I+
Sbjct: 409 DLF-EDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICL 467
Query: 477 DVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILADRL 536
V +Q+FFL G F + N L L+PK M D RPI+L + +KI++KI+ RL
Sbjct: 468 QVTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRL 527
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 192 bits (488), Expect = 5e-47
Identities = 131/427 (30%), Positives = 208/427 (48%), Gaps = 23/427 (5%)
Query: 116 RRLLWADLTHLQGCFLGPWLFIGDFNAVMGAHEKRG---RWPPTAASCSDFGSWSNANLL 172
R + W ++ L WL GDFN ++ EK+G RW + F S+ + N L
Sbjct: 57 RSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLA---FRSFVSQNGL 113
Query: 173 THLPSSGPLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLS 232
+ +G L+W R S ++ RLDR++ N W + ++ C L SDH PL+
Sbjct: 114 WDINHTGNSLSWRGTRY-SHFIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTY 172
Query: 233 ADVASVKNAISFKFYKAWTSHVDCRRLVLENWAKNVRGVGMVRLQGKLRILKTVFKQWNR 292
+K + F+F + + R LV E W + + ++ R +++ K W +
Sbjct: 173 FGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQDSVLYKIS---RCRQSIIK-WTK 228
Query: 293 SVFGDVDRQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLL--LTNALNVQDQFWKEK 350
Q + + + QQ ++S S D+ L + L A ++ FWK+
Sbjct: 229 E-------QNSNSAKAIKKAQQALESA-LSADIPDPSLIGSITQELEAAYRQEELFWKQW 280
Query: 351 SRHQSFIHGDRNTAYFHRVARIKASSKNISLLYDGA-TVLSDAGDIAAHILNYFQGIFDV 409
SR Q GDRN YFH R + N+S++ DG+ + IA+ I +YFQ IF
Sbjct: 281 SRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTT 340
Query: 410 VNNCIPNDLVARSIHALVTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQS 469
NN +V ++ +++ N LI++ EIK A+F ++ D APGPDGF F+ +
Sbjct: 341 SNNS-DLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHA 399
Query: 470 FWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVT 529
+WDI+ +DV ++ FF+ + +N + LIPKI + + D+RPIAL N Q+KIV
Sbjct: 400 YWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVA 459
Query: 530 KILADRL 536
KIL RL
Sbjct: 460 KILTRRL 466
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410913|pir||B84426 hypothetical protein
At2g01550 [imported] - Arabidopsis thaliana
Length = 1449
Score = 189 bits (480), Expect = 5e-46
Identities = 144/501 (28%), Positives = 232/501 (45%), Gaps = 34/501 (6%)
Query: 62 NNRGPRLPNLWALWNDEVLVVVIFNSDQCIALEVTW--QHSSVFLAAIYANTSYLFRRLL 119
N RG LW +W + V + SDQ I V Q F + +YA+ R++L
Sbjct: 479 NRRG----RLWVVWRENVRFTPFYKSDQLITCSVKLESQEEEFFYSFVYASNFAEERKIL 534
Query: 120 WADLT-HLQGCFLG--PWLFIGDFNAV--MGAHEKRGRWPPTAASCSDFGSWSNANLLTH 174
W DL H+ + PW+ GDFN + M H + P + DF S N +
Sbjct: 535 WNDLRDHMDSPIIRDKPWIIFGDFNEILDMDEHSRMEDHPAVTSGMRDFQSLVNYCSFSD 594
Query: 175 LPSSGPLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSAD 234
L S GPL TW N R + +LDR + NE W Y + SDH ++ +
Sbjct: 595 LASHGPLFTWCNKRDNDP-IWKKLDRVMVNEAWKMVYPQSYNVFEAGGCSDHLRCRINLN 653
Query: 235 V---ASVKNAISFKFYKAWTSHVDCRRLVLENWAK----NVRGVGMVRLQGKLRILKTVF 287
+ A V+ FKF A + + LV W + ++ + R KL+ LK
Sbjct: 654 MNSGAQVRGNKPFKFVNAVADMEEFKPLVENFWRETEPIHMSTSSLFRFTKKLKALKPKL 713
Query: 288 KQWNRSVFGDVDRQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFW 347
+ + G++ ++ R A + + QQ +S S + EA + ++++++
Sbjct: 714 RGLAKEKMGNLVKRTREAYLSLCQAQQS-NSQNPSQRAMEIESEAYVRWDRIASIEEKYL 772
Query: 348 KEKSRHQSFIHGDRNTAYFHRVARIKASSKNISLLY--DGATVLSDAGDIAAHILNYFQG 405
K+ S+ GD+N FHR A +A+ +I + DG+T + DI +FQ
Sbjct: 773 KQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTK-DDIKNETERFFQE 831
Query: 406 IFDVVNNCIPNDLVARSIHALVT-------EDENNMLIRLPLRDEIKSAVFDLNGDGAPG 458
+ IPND ++ L + E +ML EI+ A+F + D +PG
Sbjct: 832 FLQL----IPNDYEGITVEKLTSLLPYHCSPAEKDMLTASVSAKEIRGALFSMPNDKSPG 887
Query: 459 PDGFGGHFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPI 518
PDG+ FY+ WDI+G++ VL+V+ FF +G +N+ +L LIPK A+ M D+RPI
Sbjct: 888 PDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPI 947
Query: 519 ALANFQFKIVTKILADRLASI 539
+ N +K+++KI+A+RL +
Sbjct: 948 SCCNVIYKVISKIIANRLKHV 968
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 187 bits (475), Expect = 2e-45
Identities = 160/557 (28%), Positives = 249/557 (43%), Gaps = 41/557 (7%)
Query: 8 WNVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMISFSYVPSWYWHSIGVKKCCLNNRGPR 67
WNVRGF + + ++L NKP F L E + + + + N
Sbjct: 8 WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67
Query: 68 LPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSSVF--LAAIYANTSYLFRRLLWADLTH 125
L +W LW+ V VVVI S Q I E+ S + ++ +YA+ R+ LW +L
Sbjct: 68 LGKIWVLWDPSVKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNELVQ 127
Query: 126 LQGCFLGP------WLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNA-------NLL 172
L L P W+ +GDFN ++ P +A ++ G A + L
Sbjct: 128 LA---LSPVVVGRSWIVLGDFNQILN---------PESAINANIGRKIRAFRSCLLDSDL 175
Query: 173 THLPSSGPLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLS 232
L G TW N + S +A ++DR + N+ W + SDH +
Sbjct: 176 YDLVYKGSSYTWWN-KCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVV 234
Query: 233 ADVASVKNAISFKFYKAWTSHVDCRRLVLENWAK-NVRGVGMVRLQGKLRILKTVFKQWN 291
D A +K F+F+ + + D +L+ ENW NV G M R+ KL+ LK ++
Sbjct: 235 LDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFS 294
Query: 292 RSVFGDVDRQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKS 351
R + D++++V A V Q+I S +LEA ++ F+ +KS
Sbjct: 295 RENYSDIEKRVSEAHAIVLHRQRIT-LTNPSVVHATLELEATRKWQILAKAEESFFCQKS 353
Query: 352 RHQSFIHGDRNTAYFHRVARIKASSKNISLLYD--GATVLSDAG---DIAAHILNYFQGI 406
GD NTAYFH++A ++ S I+ L D G + + G I H N+F+ +
Sbjct: 354 SISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESL 413
Query: 407 FDVVNNCIPNDLVARSIHALVT----EDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGF 462
V N L ++ L++ D+ N L R +I+ A F L + A GPDG+
Sbjct: 414 LCGVEG--ENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGY 471
Query: 463 GGHFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALAN 522
F++ W +VG +V +VQ+FF G N+ LVLIPKI + M DFRPI+ N
Sbjct: 472 SSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLN 531
Query: 523 FQFKIVTKILADRLASI 539
+K++ K+L RL +
Sbjct: 532 TLYKVIAKLLTSRLKKL 548
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 187 bits (475), Expect = 2e-45
Identities = 160/557 (28%), Positives = 249/557 (43%), Gaps = 41/557 (7%)
Query: 8 WNVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMISFSYVPSWYWHSIGVKKCCLNNRGPR 67
WNVRGF + + ++L NKP F L E + + + + N
Sbjct: 8 WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67
Query: 68 LPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSSVF--LAAIYANTSYLFRRLLWADLTH 125
L +W LW+ V VVVI S Q I E+ S + ++ +YA+ R+ LW +L
Sbjct: 68 LGKIWVLWDPSVKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNELVQ 127
Query: 126 LQGCFLGP------WLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNA-------NLL 172
L L P W+ +GDFN ++ P +A ++ G A + L
Sbjct: 128 LA---LSPVVVGRSWIVLGDFNQILN---------PESAINANIGRKIRAFRSCLLDSDL 175
Query: 173 THLPSSGPLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLS 232
L G TW N + S +A ++DR + N+ W + SDH +
Sbjct: 176 YDLVYKGSSYTWWN-KCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVV 234
Query: 233 ADVASVKNAISFKFYKAWTSHVDCRRLVLENWAK-NVRGVGMVRLQGKLRILKTVFKQWN 291
D A +K F+F+ + + D +L+ ENW NV G M R+ KL+ LK ++
Sbjct: 235 LDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFS 294
Query: 292 RSVFGDVDRQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKS 351
R + D++++V A V Q+I S +LEA ++ F+ +KS
Sbjct: 295 RENYSDIEKRVSEAHAIVLHRQRIT-LTNPSVVHATLELEATRKWQILAKAEESFFCQKS 353
Query: 352 RHQSFIHGDRNTAYFHRVARIKASSKNISLLYD--GATVLSDAG---DIAAHILNYFQGI 406
GD NTAYFH++A ++ S I+ L D G + + G I H N+F+ +
Sbjct: 354 SISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESL 413
Query: 407 FDVVNNCIPNDLVARSIHALVT----EDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGF 462
V N L ++ L++ D+ N L R +I+ A F L + A GPDG+
Sbjct: 414 LCGVEG--ENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGY 471
Query: 463 GGHFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALAN 522
F++ W +VG +V +VQ+FF G N+ LVLIPKI + M DFRPI+ N
Sbjct: 472 SSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLN 531
Query: 523 FQFKIVTKILADRLASI 539
+K++ K+L RL +
Sbjct: 532 TLYKVIAKLLTSRLKKL 548
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 183 bits (465), Expect = 3e-44
Identities = 147/550 (26%), Positives = 249/550 (44%), Gaps = 31/550 (5%)
Query: 3 MIVLYWNVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMISFSYVPSWYWHSIGVKKCCLN 62
M ++ WN RG GN T L N + P +FL+ + + + + W +G+ +
Sbjct: 448 MKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRW-KLGMPNLVVK 506
Query: 63 NRGPRLPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSSVF-LAAIYANTSYLFRRLLWA 121
+ + L W E+ + + S + ++V + +Y + L W
Sbjct: 507 DCQGKSGGLAVFWKKEINLRLRTVSRLFMDVDVMEDDGFWWRFTGVYGEPRSDKKDLTWK 566
Query: 122 DLTHLQGCFLGPWLFIGDFNAVMGAHEKRGRWPPTAASCSD-FGSWSNANLLTHLPSSGP 180
L L WL +GDFN V+ + EK R A SC D F + L++L +G
Sbjct: 567 ALRTLNATKGELWLCVGDFNEVLFSWEKE-RGHAKAQSCMDRFRQTLDCCSLSNLGFTGD 625
Query: 181 LLTWSNGR-LGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVASVK 239
TW N + Y+ RLDR++ + +W + SDHHP++++ +
Sbjct: 626 PFTWRNNWCVRDGYIRERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIW 685
Query: 240 NA----ISFKFYKAWTSHVDCRRLVLENWAKNVRGVGMVRLQGKLRILKTVFKQWNRSVF 295
N F+F W C +V W +V G ++ +R + W+++
Sbjct: 686 NGGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRGG-KVMDAIREVAANLWDWSKNFL 744
Query: 296 GDVDRQVRLATD--EVSRIQQIIDSVGFSDDL--YRQD-LEAQLLLTNALNVQDQFWKEK 350
GD++++++ A E R I S + + YR D LE Q ++ +W+++
Sbjct: 745 GDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQ---------RELYWRQR 795
Query: 351 SRHQSFIHGDRNTAYFHRVARIKASSKNISLLY--DGATVLSDAGDIAAHILNYFQGIFD 408
+ GDRNT +FH A + I L DG + +AG ++ I +++ +F
Sbjct: 796 ANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSL-ISEFYKQLF- 853
Query: 409 VVNNCIPNDLVARSIHALVTEDENNMLIRLPLRDEIKSAVFDLNGD--GAPGPDGFGGHF 466
+ D + +++ VT N+ L++ +EIK A+ D GD PG DG F
Sbjct: 854 TAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTEEIKKAL-DSIGDLKAPPGSDGMPALF 912
Query: 467 YQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFK 526
Y+ FW+ VG D+V V+DF G D+ N ++VLIPK+P + + D RPI+L N +K
Sbjct: 913 YKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYK 972
Query: 527 IVTKILADRL 536
I +K+LA+RL
Sbjct: 973 IASKVLANRL 982
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 183 bits (464), Expect = 3e-44
Identities = 143/543 (26%), Positives = 234/543 (42%), Gaps = 23/543 (4%)
Query: 1 SSMIVLYWNVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMISFSYVPSWYWHSIGVKK-- 58
S M V +WN +G G T L+ +FL E +Y +GVK
Sbjct: 361 SPMRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYT-----RDLGVKMGF 415
Query: 59 ---CCLNNRGPRLPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSSVFLAAIYANTSYLF 115
C ++ RG L W + + VI + + + L V +++ + +L+ IY +
Sbjct: 416 EDMCIISPRGLS-GGLVVYWKKHLSIQVISHDVRLVDLYVEYKNFNFYLSCIYGHPIPSE 474
Query: 116 RRLLWADLTHLQGCFLGPWLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTHL 175
R LW L + GPW+ GDFN ++ +EK+G + S +F + N + L
Sbjct: 475 RHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDL 534
Query: 176 PSSGPLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADV 235
S G +W G+ + + LDR N +W A + L SDH P+++
Sbjct: 535 KSKGNPYSWV-GKRQNETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAE 593
Query: 236 ASVKNAISFKFYKAWTSHVDCRRLVLENWAKNVRGVGMVRLQGKLRILKTVFKQWNRSVF 295
F++ + D V W + R KL + +W R
Sbjct: 594 EVCTKRGQFRYDRRHFQFEDFVDSVQRGWNRG-RSDSHGGYYEKLHCCRQELAKWKR--- 649
Query: 296 GDVDRQVRLATDEVSRIQQIIDSVGFSDDLYRQD-LEAQLLLTNALNVQDQFWKEKSRHQ 354
R +++ ++ +D+ L Q L + L A ++ +W KSR++
Sbjct: 650 ----RTKTNTAEKIETLKYRVDAAERDHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNR 705
Query: 355 SFIHGDRNTAYFHRVARIKASSKNISLLYDGATVLSDAGDIAAHIL-NYFQGIFDVVNNC 413
+ GDRNT +F+ +++ S I + D + + D + NYF +F
Sbjct: 706 WMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTS 765
Query: 414 IPNDLVARSIHALVTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDI 473
++++ I VTE N+ L++ E++ AVF + D APG DGF FY WD+
Sbjct: 766 DWEEIIS-GIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDL 824
Query: 474 VGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILA 533
+G+DV L V+ FF + IN + LIPKI + M D+RPI+L +KI++KIL
Sbjct: 825 IGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILI 884
Query: 534 DRL 536
RL
Sbjct: 885 KRL 887
>gb|AAD32866.1| F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 183 bits (464), Expect = 3e-44
Identities = 134/506 (26%), Positives = 231/506 (45%), Gaps = 24/506 (4%)
Query: 44 SYVPSWYWHSIGVKKCCLNNRGPRLPNLWALWNDEVLVVVIFNSDQCI--ALEVTWQHSS 101
S +P W S CC L +W +W+ + V+V +DQ + ++++ S
Sbjct: 93 STLPGWRMDS---NYCC-----SELGRIWIVWDPSISVLVFKRTDQIMFCSIKIPSLLQS 144
Query: 102 VFLAAIYANTSYLFRRLLWAD---LTHLQGCFLGPWLFIGDFNAVMGA--HEKRGRWPPT 156
+A +Y S L RR LW D L+ + PWL +GDFN + A H +
Sbjct: 145 FAVAFVYGRNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLN 204
Query: 157 AASCSDFGSWSNANLLTHLPSSGPLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSC 216
D + L+ LPS G TWSN + + + +LDR++ N EW A +
Sbjct: 205 LRGMEDLQCCLRDSQLSDLPSRGVFFTWSNHQQDNP-ILRKLDRALANGEWFAVFPSALA 263
Query: 217 CTLIRHQSDHHPLLLSADVASVKNAISFKFYKAWTSHVDCRRLVLENWAKNVR-GVGMVR 275
SDH P ++ D + SFK++ +SH + W +N G M
Sbjct: 264 VFDPPGDSDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEENTLVGSHMFS 323
Query: 276 LQGKLRILKTVFKQWNRSVFGDVDRQVRLATDEVSRIQ-QIIDSVGFSDDLYRQDLEAQL 334
L+ L++ K + NR F ++ ++ + + IQ +++ S SD L+R++ A+
Sbjct: 324 LRQHLKVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSP--SDTLFRREHVARK 381
Query: 335 LLTNALNVQDQFWKEKSRHQSFIHGDRNTAYFHRVARIKASSKNISLLY-DGATVLSDAG 393
+ F+++KSR + GD NT +FHR ++ I L D + +
Sbjct: 382 QWIFFAAALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVD 441
Query: 394 DIAAHILNYFQGIFDVVNNCIPNDLVARSIHALVTEDEN---NMLIRLPLRDEIKSAVFD 450
I ++ Y+ + + + + V + L ++ + L +P +EI +F
Sbjct: 442 QIKGMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFS 501
Query: 451 LNGDGAPGPDGFGGHFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQ 510
+ + APGPDGF F+ W IV S VV ++++FF+ G+ N+ + LIPK+ GA
Sbjct: 502 MPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGAD 561
Query: 511 AMGDFRPIALANFQFKIVTKILADRL 536
+ FRP+A +K++T+I++ RL
Sbjct: 562 RLTQFRPVACCTTIYKVITRIISRRL 587
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7487278|pir||T00530 hypothetical protein
At2g19100 [imported] - Arabidopsis thaliana
Length = 1447
Score = 182 bits (463), Expect = 4e-44
Identities = 135/498 (27%), Positives = 238/498 (47%), Gaps = 34/498 (6%)
Query: 62 NNRGPRLPNLWALWNDEVLVVVIFNSDQCIALEVTWQH--SSVFLAAIYANTSYLFRRLL 119
N+RG +W +W V + + S+Q I V ++ F + +YA+ R++L
Sbjct: 472 NSRG----RIWVVWRRNVRLSPFYKSEQLITCSVKLENRDDEFFCSFVYASNFRDDRKVL 527
Query: 120 WADLT-HLQGCFLG--PWLFIGDFNAVMGA--HEKRGRWPPTAASCSDFGSWSNANLLTH 174
W +L H + PW+ GDFN + H K P + DF S N LT
Sbjct: 528 WNELQDHYDSPIIKKKPWIIFGDFNETLELEEHSKVEDNPVVSMGMRDFRSMVNYCSLTD 587
Query: 175 LPSSGPLLTWSNGRLGSAYVALRLDRSICNEEWL-------AFYRVTSCCTLIRHQSDHH 227
+ GPL TWSN R +A +LDR + N+ W + + C +R + +
Sbjct: 588 MAHHGPLYTWSNKREHDL-IAKKLDRVMVNDVWTQSFPQSYSVFEAGGCLDHLRGRIN-- 644
Query: 228 PLLLSADVASVKNAISFKFYKAWTSHVDCRRLVLENWAKN----VRGVGMVRLQGKLRIL 283
L + V+ FKF T D + V W + + + R KL+ L
Sbjct: 645 --LNDGPGSIVRGKRPFKFVNVLTEMEDFKPTVDSYWKETEPIFLSTSSLFRFSKKLKSL 702
Query: 284 KTVFKQWNRSVFGDVDRQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQ 343
K + + + G++ ++ R A D + + Q+ + + + ++++EA + ++
Sbjct: 703 KPLLRNLAKERLGNLVKKTREAYDTLCKKQESTLN-NPTPNAMKEEVEAHDRWEHVAGLE 761
Query: 344 DQFWKEKSRHQSFIHGDRNTAYFHRVARIKASSKNISLLY--DGATVLSDAGDIAAHILN 401
++F K+KS+ GD+N FHR + + +IS + DG+ V + +I A+
Sbjct: 762 EKFLKKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEIQCQDGS-VTAKGDEIKAYAER 820
Query: 402 YFQGIFDVVNNCIPNDLVARSIHAL---VTEDENNMLIRLPLRDEIKSAVFDLNGDGAPG 458
+F+ ++ N +A L +E E+ +L R+ +EIK +F + D +PG
Sbjct: 821 FFREFLQLIPNEYEGVTMADLQDLLPFRCSETEHELLTRVVTAEEIKKVLFSMPNDKSPG 880
Query: 459 PDGFGGHFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPI 518
PDGF F+++ W+I+G++ +L++Q FF +G IN+ +L LIPK A+ M D+RPI
Sbjct: 881 PDGFTSEFFKATWEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPI 940
Query: 519 ALANFQFKIVTKILADRL 536
+ N +K+++KI+A+RL
Sbjct: 941 SCCNVIYKVISKIIANRL 958
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 181 bits (459), Expect = 1e-43
Identities = 125/401 (31%), Positives = 191/401 (47%), Gaps = 15/401 (3%)
Query: 141 NAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTHLPSSGPLLTWSNGRLGSAYVALRLDR 200
N ++ EKRG P S DF S+ + N L L SG +W R +V RLDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRY-DWFVRQRLDR 94
Query: 201 SICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVASVKNAISFKFYKAWTSHVDCRRLV 260
++ N WL + L SDH PL++ D A VK F+F + L+
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQFRFDNRLRDNDVVNALI 154
Query: 261 LENWAKNVRGVGMVRLQGKLRILKTVFKQWNRSVFGDVDRQVRLATDEVSRIQQIIDSVG 320
E W G +L T Q R + Q + + + + Q+ ++
Sbjct: 155 QETWTN----------AGDASVL-TKMNQCRREIINWTRLQNLNSAELIEKTQKALEEAL 203
Query: 321 FSDDLYRQDLEA-QLLLTNALNVQDQFWKEKSRHQSFIHGDRNTAYFHRVARIKASSKNI 379
+D + A L +A +++QFWK++SR GDRNT YFH V R + + +
Sbjct: 204 TADPPNPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRL 263
Query: 380 SLLYD-GATVLSDAGDIAAHILNYFQGIFDVVNNCIPNDLVARSIHALVTEDENNMLIRL 438
+++ D + I+ I YFQ IF ++ +V +I +V++ +N+ L R+
Sbjct: 264 TVMEDINGVAQHEEHQISQIISGYFQQIFTSESDG-DFSVVDEAIEPMVSQGDNDFLTRI 322
Query: 439 PLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSN 498
P +E+K AVF +N APGPDGF FY S+W I+ +DV ++ FF +F +N
Sbjct: 323 PNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNET 382
Query: 499 LLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILADRLASI 539
+ LIPK G + + D+RPIAL N +KIV KI+ R+ I
Sbjct: 383 HIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLI 423
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 179 bits (455), Expect = 4e-43
Identities = 143/552 (25%), Positives = 237/552 (42%), Gaps = 28/552 (5%)
Query: 7 YWNVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMISFSYVPSWYWHSIGVKKCCLNNRGP 66
+WNVRG ++ + N F L E + S V N
Sbjct: 5 FWNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHN 64
Query: 67 RLPNLWALWNDEVLVVVIFNSDQCIALEVTWQ--HSSVFLAAIYANTSYLFRRLLWADLT 124
R +W LW V + I+ S Q + V + F + +YA+ R++LW++L
Sbjct: 65 RRGRIWVLWRKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124
Query: 125 -HLQGCFLG--PWLFIGDFNAVM--GAHEKRGRWPPTAASCSDFGSWSNANLLTHLPSSG 179
H + PW +GDFN + H + P DF N LT + + G
Sbjct: 125 DHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMAAQG 184
Query: 180 PLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVAS-- 237
PL TW N R + +LDR + N+ W + + SDH +S + +
Sbjct: 185 PLFTWCNKR-EHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDHLRCRISLNSEAGN 243
Query: 238 -VKNAISFKFYKAWTSHVDCRRLVLENWAKN----VRGVGMVRLQGKLRILKTVFKQWNR 292
V+ FKF A T D + +V W + + R L+ LK + R
Sbjct: 244 KVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMAR 303
Query: 293 SVFGDVDRQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKSR 352
G++ ++ A ++ +Q ++ S ++ A +++++ K+KS+
Sbjct: 304 DRLGNLSKKANEAY-KILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEKYLKQKSK 362
Query: 353 HQSFIHGDRNTAYFHRVARIKASSKNISLLYDGATVLSDAGD-IAAHILNYFQGIFDVVN 411
GD+NT FHR A + + I + ++ GD I A +F+ +
Sbjct: 363 LHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQL-- 420
Query: 412 NCIPNDLVARSIHAL-------VTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGG 464
IPND +I L ++ + LIR +EI+ +F + D +PGPDG+
Sbjct: 421 --IPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTS 478
Query: 465 HFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQ 524
F+++ W+I+G + L+VQ FF +G INS +L LIPK A+ M D+RPI+ N
Sbjct: 479 EFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVL 538
Query: 525 FKIVTKILADRL 536
+K+++KI+A+RL
Sbjct: 539 YKVISKIIANRL 550
>gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 179 bits (453), Expect = 6e-43
Identities = 138/550 (25%), Positives = 240/550 (43%), Gaps = 28/550 (5%)
Query: 8 WNVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMIS--------FSYVPSWYWHSIGVKKC 59
WNVRGF N + + ++ +K F + E + S P W K
Sbjct: 7 WNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGW--------KS 58
Query: 60 CLNNRGPRLPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSSV--FLAAIYANTSYLFRR 117
N L +W +W+ V V V+ SDQ I+ V H S + +YA RR
Sbjct: 59 VCNYEFAALGRIWVVWDPAVEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRR 118
Query: 118 LLWADLTHL---QGCFLGPWLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTH 174
LW++L L Q PW+ +GDFN + + +F + ++
Sbjct: 119 RLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISD 178
Query: 175 LPSSGPLLTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSAD 234
LP G TW N + + +A ++DR + N+ WL ++ SDH P ++
Sbjct: 179 LPFRGNHYTWWNNQENNP-IAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNIS 237
Query: 235 VASVKNAISFKFYKAWTSHVDCRRLVLENWAKNV-RGVGMVRLQGKLRILKTVFKQWNRS 293
S FK H + + W + +G M L K + LK + +NR
Sbjct: 238 NQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNRE 297
Query: 294 VFGDVDRQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKSRH 353
+ ++++V A + Q + + S L + EA +++F +KSR
Sbjct: 298 HYSGLEKRVVQAAQNLKTCQNNLLAAP-SSYLAGLEKEAHRSWAELALAEERFLCQKSRV 356
Query: 354 QSFIHGDRNTAYFHRVARIKASSKNISLLYDGA-TVLSDAGDIAAHILNYFQGIFDVVNN 412
GD NT +FHR+ + + I L D + + ++ H +++F+ +F ++
Sbjct: 357 LWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSH 416
Query: 413 CIPNDLVAR--SIHALVTEDENNMLIRLPLRD-EIKSAVFDLNGDGAPGPDGFGGHFYQS 469
I + +++ S+ ++ L+ + + +IKS F L + +PGPDG+ F++
Sbjct: 417 LISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKK 476
Query: 470 FWDIVGSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVT 529
W IVG ++ +VQ+FF G NS + ++PK P A + +FRPI+ N +K+++
Sbjct: 477 TWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVIS 536
Query: 530 KILADRLASI 539
K+LA RL +I
Sbjct: 537 KLLARRLENI 546
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 179 bits (453), Expect = 6e-43
Identities = 123/409 (30%), Positives = 187/409 (45%), Gaps = 17/409 (4%)
Query: 133 PWLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTHLPSSGPLLTWSNGRLGSA 192
P L +GD+N + E RG ++ DF ++ N L + TW G+ S
Sbjct: 5 PCLIMGDYNETLIPAE-RGSHLISSQGARDFQNFINNMGLIEISPIKGFFTWFRGQSKS- 62
Query: 193 YVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVASVKNAISFKFYKAWTS 252
+LDR EWL + L R SDH PLL + + F+F W +
Sbjct: 63 ----KLDRLFVQPEWLTSFPSLKLNILKRSPSDHCPLLAFSSHQNW-GPKPFRFLNCWLT 117
Query: 253 HVDCRRLVLENWAKNVRGVGMVRLQGKLRILKTVFKQWNRSVFGDVDRQVRLATDEVSRI 312
H C +++ E W KN + KLR LK KQWN+ FG +D ++ +++ +
Sbjct: 118 HPQCMKIISEIWTKNHNS----SVPDKLRTLKEALKQWNQKEFGIIDDNIKHCEEKIHFL 173
Query: 313 QQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKSRHQSFIHGDRNTAYFHRVARI 372
I +S + ++ +AQL L L + +W SR + GD NT YFH +A I
Sbjct: 174 DNIANSRLLCTNELQERDDAQLNLWTWLKRSESYWALNSRARWIKEGDSNTRYFHTLATI 233
Query: 373 KASSKNISLLYDGATVLSDAGDIAAHILNYFQGIFDVVNNCIP--NDLVARSIHALVTED 430
+ ++ + +S G+I + YFQ IF + P N L + +E
Sbjct: 234 RRHKNHLQYIKTEGKNISKPGEIKEEAVAYFQHIFAEEFSTRPVFNGLNFNKL----SES 289
Query: 431 ENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIVGSDVVLSVQDFFLQGS 490
E + LI +EI AV + APGPDGF F +S W+++ D+ V+DF+ GS
Sbjct: 290 ECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYKIVEDFWASGS 349
Query: 491 FADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILADRLASI 539
NS + LIPK + +FRPI++ +KI+ KILA RL +
Sbjct: 350 LPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRV 398
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 177 bits (449), Expect = 2e-42
Identities = 145/539 (26%), Positives = 240/539 (43%), Gaps = 20/539 (3%)
Query: 9 NVRGFGNLDTKIALQNFYLSNKPTFIFLAEPMISFSYVPSWYWHSIGVKKCCLNNRGPRL 68
N RG G+ T L+ S +P+ +FL+E + + W S+G +
Sbjct: 12 NCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMW-SLGFSGSFAVSCEGLS 70
Query: 69 PNLWALWNDEVLVVVI-FNSDQCIALEVTWQHSSVFLAAIYANTSYLFRRLLWADLTHLQ 127
L W V + FNS L T + ++ +Y R W L L
Sbjct: 71 GGLALFWTTAYTVSLRGFNSHFIDVLVSTEELPPWRISFVYGEPKRELRHFFWNLLRRLH 130
Query: 128 GCFLGPWLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTHLPSSGPLLTWSNG 187
+ GPWL GDFN V+ E G + F S + L L GP TWSN
Sbjct: 131 DQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNK 190
Query: 188 RLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVAS-----VKNAI 242
+ ++ +RLDR++ N E+ ++ +I SDH+ + + + +
Sbjct: 191 QDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQRRIPIQQ 250
Query: 243 SFKFYKAWTSHVDCRRLVLENWAKNVRGVGMVRLQGKLRILKTV---FKQWNRSVFGDVD 299
F+F AW D R +V +W + G V L+G +L+ V K W+++ FG V
Sbjct: 251 GFRFEAAWLRAEDYREVVENSW--RISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVR 308
Query: 300 RQVRLATDEVSRIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKSRHQSFIHG 359
R++ ++ ++Q +D + +++ + L ++ +++SR G
Sbjct: 309 RKILKMERKLKSLRQS----PVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREG 364
Query: 360 DRNTAYFHRVARIKASSKNISLLY--DGATVLSDAGDIAAHILNYFQGIFDVVNNCIPND 417
DRNTA+FH A + + I L DG+ +S G I +++ +F C +
Sbjct: 365 DRNTAFFHARASARRRTNRIKELVRDDGSRCISQEG-IKRMAEVFYENLFSS-EPCDSME 422
Query: 418 LVARSIHALVTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIVGSD 477
V +I V + N L + +EIK+A+F + APGPDGF FYQ+ W I+
Sbjct: 423 EVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEH 482
Query: 478 VVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILADRL 536
+ +V+ F L + + +++VLIPK+ A + FRPI+L N +KI +K+LA+RL
Sbjct: 483 ICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRL 541
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 177 bits (449), Expect = 2e-42
Identities = 132/515 (25%), Positives = 234/515 (44%), Gaps = 21/515 (4%)
Query: 29 NKPTFIFLAEPMISFSYVPSWYWHSIGVKKCCLNNRGPRLPNLWALWNDEVLVVVIFNSD 88
++P +FLAE V + IG+++C N + L W++ + VV+ +
Sbjct: 10 HRPKIVFLAETRQDQYMVQN----RIGLRRCFTVNGVGKGGGLALFWDESMNVVLKSYNS 65
Query: 89 QCIALEVTWQHSSVFLAA-IYANTSYLFRRLLWADLTHLQGCFLGPWLFIGDFNAVMGAH 147
+ I + +T + A +Y R L+W+ L ++ PWL IGDFN M
Sbjct: 66 RHIDVLITELDCCTWRATFVYGEPRAQDRHLMWSLLRRIRSNSGDPWLMIGDFNEAMWQT 125
Query: 148 EKRGRWPPTAASCSDFGSWSNANLLTHLPSSGPLLTWSNGRLGSAYVALRLDRSICNEEW 207
E + + + DF + L + G T+ N + V +RLDR + + W
Sbjct: 126 EHKSHRKRSESQMRDFREVLSECDLHDIGFQGAPWTFCNMQREGRNVKVRLDRGVASPAW 185
Query: 208 LAFYRVTSCCTLIRHQSDHHPLLLSADVASVKNAISFKFYK-AWTSHVDCRRLVLENWAK 266
+ + L SDH PLLL + ++ + Y+ W ++ E W
Sbjct: 186 SSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWERESSLPEVIQEAWTM 245
Query: 267 NVRGVGMVRLQGKLRILKTVFKQWNRSVFGDVDRQVRLATDEVSRIQQIIDSVGFSDDLY 326
+ + K+++ T W++ G+V ++++ +++ ++ I L
Sbjct: 246 GADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNI--------GLL 297
Query: 327 RQDLEAQLL---LTNALNVQDQFWKEKSRHQSFIHGDRNTAYFHRVARIKASSKNISLLY 383
D E + L L+ ++ +WK++SR GD NT YFH A +A I L
Sbjct: 298 DTDNEVHSVKKELEEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLK 357
Query: 384 --DGATVLSDAGDIAAHILNYFQGIFDVVNNCIPNDLVARSIHALVTEDENNMLIRLPLR 441
DG+T ++ ++ ++FQ ++ +N P +L+ H ++E N LI+
Sbjct: 358 KNDGSTTMNKK-EMKEINRSFFQQLYTKDDNLNPVNLL-NMFHEKISEQMNADLIKPFTN 415
Query: 442 DEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIVGSDVVLSVQDFFLQGSFADNINSNLLV 501
+EI A+F + APGPDGF F Q W ++ +V+ +V++FF + +N ++V
Sbjct: 416 EEISDALFQIGPLKAPGPDGFPARFLQRNWGLLKGEVIAAVRNFFEDEVMQEGVNDTVIV 475
Query: 502 LIPKIPGAQAMGDFRPIALANFQFKIVTKILADRL 536
+IPK A+ M DFRPI+L N +K+V K L +R+
Sbjct: 476 MIPKKNLAEDMKDFRPISLCNVVYKVVAKCLVNRM 510
>emb|CAB79491.1| putative protein [Arabidopsis thaliana] gi|3046704|emb|CAA18234.1|
putative protein [Arabidopsis thaliana]
gi|7486787|pir||T05068 hypothetical protein M3E9.210 -
Arabidopsis thaliana
Length = 1141
Score = 176 bits (446), Expect = 4e-42
Identities = 139/488 (28%), Positives = 227/488 (46%), Gaps = 32/488 (6%)
Query: 68 LPNLWALWNDEVLVVVIFNSDQCIALEVTWQHSS--VFLAAIYANTSYLFRRLLWADLTH 125
L +W LW+ V VV++ S Q I EV + +S + ++ +YA R+ LW ++T
Sbjct: 60 LGKIWVLWDPSVEVVIVAKSLQMITCEVLFPNSRTWIVISVVYAANEDDKRKELWREITA 119
Query: 126 LQGC---FLGPWLFIGDFNAVMGAHE-KRGRWPPTAASCSDFGSWSNANLLTHLPSSGPL 181
L F PW+ +GDFN V+ HE R DF L+ L G
Sbjct: 120 LVASPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLDAELSDLVYKGSS 179
Query: 182 LTWSNGRLGSAYVALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVASVKNA 241
TW N + + VA ++DR + NE W + + SDH + ++ +K
Sbjct: 180 FTWWN-KSKTRPVAKKIDRILVNESWSNLFPSSFGLFGPPDFSDHASCGVVLELDPIKAK 238
Query: 242 ISFKFYKAWTSHVDCRRLVLENW-AKNVRGVGMVRLQGKLRILKTVFKQWNRSVFGDVDR 300
FKF+ + + LV + W + NV G M R+ KL+ LK K ++R + ++++
Sbjct: 239 RPFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEK 298
Query: 301 QVRLATDEVSRIQQI-IDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKSRHQSFIHG 359
+ A + + Q + +D+ + + +LEAQ ++ F++++SR F G
Sbjct: 299 RTEEAHETLLSFQNLTLDNPSLENAAH--ELEAQRKWQILATAEESFFRQRSRVTWFAEG 356
Query: 360 DRNTAYFHRVARIKASSKNISLLYDGA-TVLSDAGDIAAHILNYFQGIFDVVNNCIPNDL 418
D NT YFHR+A + S I+ L D + T + IA H YF+ + N+ P L
Sbjct: 357 DGNTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALYFENLLSDDND--PYSL 414
Query: 419 VARSIHALVTE----DENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIV 474
++ L+T + L + ++IK+A F L + A GPDGF
Sbjct: 415 EQDDMNLLLTYRCPYSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGF------------ 462
Query: 475 GSDVVLSVQDFFLQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILAD 534
V +V++FF+ G+ N+ +VLIPK P A DFRPI+ N +K++ ++L D
Sbjct: 463 --PVTAAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTD 520
Query: 535 RLASIAMC 542
RL + C
Sbjct: 521 RLQKLLSC 528
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 174 bits (442), Expect = 1e-41
Identities = 132/470 (28%), Positives = 206/470 (43%), Gaps = 22/470 (4%)
Query: 74 LWNDEVLVVVIFNSDQCIALEVTWQHSSVFLAAIYANTSYLFRRLLWADLTHLQGCFLGP 133
LW V V + F + +V + + ++ +Y + R W ++ +
Sbjct: 37 LWKSSVQVDLKFVDKNLMDAQVQFGAVNFCVSCVYGDPDRSKRSQAWERISRIGVGRRDK 96
Query: 134 WLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTHLPSSGPLLTWSNGRLGSAY 193
W GDFN ++ EK G + C F L +P+ G TW+ GR G +
Sbjct: 97 WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWA-GRRGDHW 155
Query: 194 VALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVASVKNAISFKFYKAWTSH 253
+ RLDR+ N+EW F+ V++ L SDH P+L+ + F+F K +
Sbjct: 156 IQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFK 215
Query: 254 VDCRRLVLENWAKNVRGVGMV---RLQGKLRILKTVFKQWNRSVFGDVDRQVRLATDEVS 310
D + ++ W++ G + RL+ + L + KQ N + +++ E S
Sbjct: 216 EDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQS 275
Query: 311 RIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKSRHQSFIHGDRNTAYFHRVA 370
+ I V + ++DL A ++ +WK+KSR + G+RN+ YFH
Sbjct: 276 LVWPIFQRVS----VLKKDL------AKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAV 325
Query: 371 RIKASSKNISLLYD--GATVLSDA--GDIAAHILNYFQGIFDVVNNCIPNDLVARSIHAL 426
+ K I L D G S+A G++AA YF +F N D + +
Sbjct: 326 KQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAA---YFGNLFKSSNPSGFTDWFSGLVPR- 381
Query: 427 VTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIVGSDVVLSVQDFF 486
V+E N L+ EIK AVF + APGPDG F+Q +W VG+ V V+ FF
Sbjct: 382 VSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFF 441
Query: 487 LQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILADRL 536
G N L LIPK M D RPI+L + +KI++KI+A RL
Sbjct: 442 ADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRL 491
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 174 bits (442), Expect = 1e-41
Identities = 132/470 (28%), Positives = 206/470 (43%), Gaps = 22/470 (4%)
Query: 74 LWNDEVLVVVIFNSDQCIALEVTWQHSSVFLAAIYANTSYLFRRLLWADLTHLQGCFLGP 133
LW V V + F + +V + + ++ +Y + R W ++ +
Sbjct: 34 LWKSSVQVDLKFVDKNLMDAQVQFGAVNFCVSCVYGDPDRSKRSQAWERISRIGVGRRDK 93
Query: 134 WLFIGDFNAVMGAHEKRGRWPPTAASCSDFGSWSNANLLTHLPSSGPLLTWSNGRLGSAY 193
W GDFN ++ EK G + C F L +P+ G TW+ GR G +
Sbjct: 94 WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWA-GRRGDHW 152
Query: 194 VALRLDRSICNEEWLAFYRVTSCCTLIRHQSDHHPLLLSADVASVKNAISFKFYKAWTSH 253
+ RLDR+ N+EW F+ V++ L SDH P+L+ + F+F K +
Sbjct: 153 IQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFK 212
Query: 254 VDCRRLVLENWAKNVRGVGMV---RLQGKLRILKTVFKQWNRSVFGDVDRQVRLATDEVS 310
D + ++ W++ G + RL+ + L + KQ N + +++ E S
Sbjct: 213 EDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQS 272
Query: 311 RIQQIIDSVGFSDDLYRQDLEAQLLLTNALNVQDQFWKEKSRHQSFIHGDRNTAYFHRVA 370
+ I V + ++DL A ++ +WK+KSR + G+RN+ YFH
Sbjct: 273 LVWPIFQRVS----VLKKDL------AKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAV 322
Query: 371 RIKASSKNISLLYD--GATVLSDA--GDIAAHILNYFQGIFDVVNNCIPNDLVARSIHAL 426
+ K I L D G S+A G++AA YF +F N D + +
Sbjct: 323 KQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAA---YFGNLFKSSNPSGFTDWFSGLVPR- 378
Query: 427 VTEDENNMLIRLPLRDEIKSAVFDLNGDGAPGPDGFGGHFYQSFWDIVGSDVVLSVQDFF 486
V+E N L+ EIK AVF + APGPDG F+Q +W VG+ V V+ FF
Sbjct: 379 VSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFF 438
Query: 487 LQGSFADNINSNLLVLIPKIPGAQAMGDFRPIALANFQFKIVTKILADRL 536
G N L LIPK M D RPI+L + +KI++KI+A RL
Sbjct: 439 ADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRL 488
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.346 0.153 0.561
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,904,749,024
Number of Sequences: 2540612
Number of extensions: 78968937
Number of successful extensions: 276328
Number of sequences better than 10.0: 512
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 237
Number of HSP's that attempted gapping in prelim test: 275084
Number of HSP's gapped (non-prelim): 808
length of query: 1145
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1006
effective length of database: 510,215,326
effective search space: 513276617956
effective search space used: 513276617956
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 81 (35.8 bits)
Medicago: description of AC146565.8