BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146556.9 + phase: 0
(2244 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 2354 0.0
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 1654 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 907 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 769 0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 766 0.0
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 756 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 702 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 700 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 700 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 699 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 697 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 696 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 694 0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 694 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 693 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 692 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 692 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 691 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 686 0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva... 683 0.0
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 2354 bits (6100), Expect = 0.0
Identities = 1241/2332 (53%), Positives = 1585/2332 (67%), Gaps = 166/2332 (7%)
Query: 7 QLRTKLASLREELAKAHDAMTALLATQEQPVPVVSTAANVTPTVTTDPRSIMPSGYPYGL 66
Q++T+LA +R +A+ M + QE+ +V VTP P +P G P
Sbjct: 3 QVQTELAEMRANMAQFMHMMQGVAQGQEELRALVQRQEAVTPP----PNQALPEGNP--- 55
Query: 67 PLYYTANTGAGTSGTTNNGPIPGANLTPVSTALTQA-ATTVTEPIVNAVP-------LFV 118
++ T + + G + A A A + P N +P LF
Sbjct: 56 -VHDTPAAAIPVNNYAVGEELMGIRVDGQPIAPDAANARVIHAPARNRIPIVDRQEDLFT 114
Query: 119 HANAHHGSTATTGTIEERMAELAKELRREIKANRGNGDSIKTQDLCLVSKVDVPKKFKVP 178
+ + ++ LA+++R N D ++ LV + +P KFK P
Sbjct: 115 MFSEDEDIPGRNDARDRKVDALAEKIRAMECQNSLGFD---VTNMGLVEGLRIPYKFKAP 171
Query: 179 EFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFD 238
FDKYNG +CP+ H+ Y RK+ Y D++ + +++FQDSL + +WY L D + +
Sbjct: 172 SFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRCWR 231
Query: 239 ELATAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQT 298
+L AF Y N + P+R L+SL QK ESF+EYAQRWR AAR+ P + E E+T
Sbjct: 232 DLGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELTDM 291
Query: 299 FLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRYGNGHH 358
F+ TL+ +++RM +FS++V G R E ++ G I + ++SK+ G
Sbjct: 292 FIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKKPFAGAP 347
Query: 359 KKKETEVGMVSAGAGQAMATVAPINAAQMPPSYPYMPYSQHPFFPPFYHQYPLPPGQPQV 418
+++E E V Q A +P P
Sbjct: 348 RRREGETNAVQHRRDQNRIEYRQAAAVTIPAPQP-------------------------- 381
Query: 419 PVNAIAQQMKQQLPVQQQQQQQQQQQQYTRPTFPP-----IPMLYAELLPTLLQRGH--- 470
+ +QQ VQQ QQQQQQ+ R P +PM YAELLP LL+ G
Sbjct: 382 -------RQQQQQRVQQPQQQQQQRPYQPRQRMPDRRFDSLPMSYAELLPELLRLGLVEL 434
Query: 471 CTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVP 530
CT PP LPP + ++++CDFH GA GH E C AL++ V+ LID + F VP
Sbjct: 435 CTMA----PPTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDANAINFAP-VP 489
Query: 531 HVLDNPLPNHAA--VNMIEVCEEAPRLD-VRNVATPLVPLHIKLCKASLFSHDHAKCLGC 587
+V++NP+P H VN IE E +D V +V T L+ + +L ++S CLGC
Sbjct: 490 NVVNNPMPQHGGHRVNNIEGKEAEDLVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGC 549
Query: 588 LRDPLGCHAVQDDIQSLMNDNLLTVS-------DVCVIVPVF-----HDPPIKSVPLKKN 635
GC ++ IQ +M++ L S V I F H + S P N
Sbjct: 550 AESENGCDQLRAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGHGQRVVSAPAT-N 608
Query: 636 AEPLVIRLP------------GPIPYVSDKAVPYKY-----------------NATIIEN 666
P+ I +P G + +AVP+KY N T +
Sbjct: 609 GTPVTIPVPVTISAPTTIVASGRRAVENSRAVPWKYDNAYRSNRRVESQTKPVNQTPVTI 668
Query: 667 GV--EVPLASFATVSNIAEGTSAALRSGKVRPPLFQKKVATPITPPFEEATP------TV 718
G+ VP V N+ G RSG++ P P+ EA V
Sbjct: 669 GLANRVPATVGPAVDNVG-GPGGFTRSGRLFAP-------QPLRDNNAEALAKAKGKQAV 720
Query: 719 VSPIATDVNQPGKSIEDSNLDEILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNT 778
V P S E +++E +++IK+SDYKIVDQL QTPSKIS+LSLLL SEAHRN
Sbjct: 721 VEEEPVQKEAPEGSFE-KDVEEFMKMIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNA 779
Query: 779 LLKVLEQAYVDHEVTVDRFGGIVGNITACNNLWFSEEELPEVGKSHNLALHISVNCKSDL 838
LLK+L AYV E++V++ G++ N++ + + F+ +LP G++HN ALHI++ CK +
Sbjct: 780 LLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGFTNLDLPPEGRNHNKALHITMECKGAV 839
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPE 898
+S+VLVDTGSSLNV+PK L ++ G L S +V+AFD S+++V GE+ LP+ IGPE
Sbjct: 840 LSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPSDLIVRAFDRSKRSVCGEVTLPVKIGPE 899
Query: 899 NFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFIRNGKLVTVHGEEAYLVSQL 958
F I F VMDI +YSCLLGRPWIH AGAV+STLHQKLK++ NG++VTV GEE LVS L
Sbjct: 900 VFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHL 959
Query: 959 TSFSCIEA-GSAEGT---AFQGLTIEG---AEPKKAGAAMASLKDAQKVIQEGQTAGWGK 1011
+SF +E G T F+ + +E AE +K G ++ S K A++V+ G+ GWGK
Sbjct: 960 SSFKYVEVDGEIHETLCQVFETVALEKVAYAEQRKPGVSITSYKQAKEVVDSGKAEGWGK 1019
Query: 1012 VIQLCENKRKEGLGFSPSSRVSSG-----VFHSAGFVNAISEEATGSG-----------L 1055
++ L + K G+G+ P +G F SAG +N ATGS +
Sbjct: 1020 MVDLPVKEDKFGVGYEPLQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWV 1079
Query: 1056 RPVFVTPGGIARDWNAIDVPSIMHVSELNHNKPVEHSNPTVPPSFDFPVYEAEDEEGDD- 1114
RP PGG +W A +V + ++E + + + FD P+Y+AE+E +D
Sbjct: 1080 RPC--APGGSINNWTAEEVVQVTLLTESDLMAFTMNGSVIAQYDFDNPIYQAEEESEEDC 1137
Query: 1115 -IPYEITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYP 1173
+P E+ RLL+QE++ IQPHQEE+E+VN+GTE+ REIKIGA LE+ VK+++I++LREY
Sbjct: 1138 ELPAELVRLLKQEERVIQPHQEELEVVNLGTEDATREIKIGAALEDSVKRRLIEMLREYV 1197
Query: 1174 DIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1233
+IFAWSY+DMPGLD IV H++P + CP V+QKLRRT PDMA KIK EVQKQ DAGFL
Sbjct: 1198 EIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQKQWDAGFLA 1257
Query: 1234 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1293
YP W+ANIVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPHIDVLVDNTAQS VFSFM
Sbjct: 1258 VTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVFSFM 1317
Query: 1294 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1353
DGFSGYNQIKM+PED EKT+FITPWGTFCYKVMPFGL NAGATYQR MTTLFHDM+HKE+
Sbjct: 1318 DGFSGYNQIKMAPEDMEKTTFITPWGTFCYKVMPFGLKNAGATYQRAMTTLFHDMMHKEI 1377
Query: 1354 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1413
EVYVDDMI KS EE+H+ L K+F+RLRK+KLRLNPNKCTFGVRSGKLLGFIVS+KGIE
Sbjct: 1378 EVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLLGFIVSEKGIE 1437
Query: 1414 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1473
VDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC PIFKLLRKNQ I WND+
Sbjct: 1438 VDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCEPIFKLLRKNQAIKWNDD 1497
Query: 1474 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSK 1533
CQ+AFD IK YL +PPIL+PPV GRPLIMYL+V + SMGCVLG+ DE+G+KEHAIYYLSK
Sbjct: 1498 CQKAFDKIKEYLQKPPILIPPVPGRPLIMYLSVTENSMGCVLGRHDESGRKEHAIYYLSK 1557
Query: 1534 KFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1593
KFTDCETRY++LEKTCCALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK A+TG++ARW
Sbjct: 1558 KFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPALTGRVARW 1617
Query: 1594 QMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIN 1653
QM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPDE+IMYLK KDC+EPL+
Sbjct: 1618 QMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKMKDCKEPLVE 1677
Query: 1654 EGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 1713
EGPDP KW L+FDGAVN G G+GAV+++P+G H+PF+AR+ F+ TNN AEYEACI GI
Sbjct: 1678 EGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLTFDVTNNEAEYEACIMGI 1737
Query: 1714 EEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRD 1773
EEAID+RIK LDI+GDSALV+NQ+ G+W T+ LIPYRDY RR+LT+F KV+L+H+PRD
Sbjct: 1738 EEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVKLYHVPRD 1797
Query: 1774 ENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPWYYD 1833
ENQMADALATLSSM +VN WN VP + V RLERP++VFA V V+D +PWYYD
Sbjct: 1798 ENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESV-------VIDEKPWYYD 1850
Query: 1834 IKQFLLSREYPPGASKQDKKTLRRLAGRFLLD-GDILYKRNYDMVLLRCVDEHEAEQLMH 1892
IK FL ++EYP GASK DKKTLRRLAG F L+ D+LYKRN+DMVLLRC+D EA+ LM
Sbjct: 1851 IKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFDMVLLRCMDRPEADMLMQ 1910
Query: 1893 DVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNV 1952
+VH+G+FGTHA GH M++KLLRAGYYWMTME DC++YARKCHKCQIYAD++HVPP LNV
Sbjct: 1911 EVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHKCQIYADRVHVPPSPLNV 1970
Query: 1953 MSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNN 2012
M+SPWPF+MWGIDMIG+IEP ASNGHRFILVAIDYFTKWVEAASY N+TKQVV +FIK
Sbjct: 1971 MNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAASYANITKQVVTRFIKKE 2030
Query: 2013 IICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIV 2072
IICRYGVP +IITDNG+NLNN +++ LC++FKIEHHNSSPYRP+MNGAVEAANKNIK+IV
Sbjct: 2031 IICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRPKMNGAVEAANKNIKKIV 2090
Query: 2073 QKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAK 2132
+KMV TYKDWHEMLP+ALHGYRT+VR+STGATP+SLVYGMEAVLP+EVEIPSLRV+++ K
Sbjct: 2091 RKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVEVEIPSLRVLLDVK 2150
Query: 2133 LSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRIS 2192
L EAEW ++R+++L+LIEE+R+ + GQ YQ RMK AFD+KV PR +++G+LVLKR +
Sbjct: 2151 LDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKVRPRSYQIGDLVLKRILP 2210
Query: 2193 QQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2244
D RGKWTPNYEGPYVVKK FSGGAL+LT MDG + P+PVN+D+VKKYFA
Sbjct: 2211 PGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVNSDVVKKYFA 2262
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 1654 bits (4283), Expect = 0.0
Identities = 919/1872 (49%), Positives = 1198/1872 (63%), Gaps = 152/1872 (8%)
Query: 7 QLRTKLASLREELAKAHDAMTALLATQEQPVPVVSTAANVTPTVTTDPRSIMPSGYPYG- 65
Q++ +LA ++ +A+ + M + QE+ +V P V P P G P
Sbjct: 3 QVQAELAEMKANMAQFMNMMQGVAQGQEELRALVQRQEAAIPPVNHAP----PEGGPVNG 58
Query: 66 ------LPLYYTANTGAGTSGTTNNGPIPGANLTPVSTALTQAATTVTEPIVNAVPLFVH 119
+P+ A G G NG P++ + A V P N P+
Sbjct: 59 NNVAAAVPINNYA-VGDELGGIRINGQ-------PIAPDVANARA-VRAPARNPAPIVDR 109
Query: 120 ANAHHGSTA----TTGTIEERMAELAKELRREIKANR-GNGDSIKTQDLCLVSKVDVPKK 174
+ G ++ER ++ L +I+A N ++ LV + +P K
Sbjct: 110 QEDMFSLLSEDEDVLGRVDERDRKV-DALAEKIRAMECQNSLGFDVTNMGLVEGLRIPYK 168
Query: 175 FKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHYFQDSLMEDAAEWYTSLSKDDV 234
FK P FDKYNG +CP+ H+ Y RK+ Y D++ + +++FQDSL + +WY L +D +
Sbjct: 169 FKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRDSI 228
Query: 235 HTFDELATAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEE 294
+ +L AF Y N + P+R L+SL QK ESF+EYAQRWR AAR+ P + E E
Sbjct: 229 RCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLERE 288
Query: 295 MTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESSVNASKRYG 354
+T F+ TL+ +++RM +FS++V G R E ++ G I ++ ++SK+
Sbjct: 289 LTDMFIGTLQGVFMDRMGSCPFVSFSDVVICGERTESLIKTGKI----QDAGSSSSKKPF 344
Query: 355 NGHHKKKETEVGMVSAGAGQAMATVAPINAAQMPPSYPYMPYSQHPFFPPFYHQYPLPPG 414
G +++E E V Q + + A +P P
Sbjct: 345 AGAPRRREGETNAVQYRRDQNRSQRCQVAAVTIPAPQPRQQ------------------- 385
Query: 415 QPQVPVNAIAQQMKQQLPVQQQQQQQQQQQQYTRPT--FPPIPMLYAELLPTLLQRGHCT 472
QQ + Q P QQQQQQ+ Q + P F +PM YAELLP LL+ G
Sbjct: 386 ----------QQQRVQQPQQQQQQQRPYQPRQRMPDRRFDSLPMSYAELLPELLRLGMVE 435
Query: 473 TRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHV 532
R PP LPP + ++++CDFH GA GH E C AL++ V+ LID + F VP+V
Sbjct: 436 LRT-MAPPTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDAKAINFAP-VPNV 493
Query: 533 LDNPLPNHAA--VNMIEVCE-EAPRLDVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLR 589
++NP+P H VN IE E E ++V +V T L+ + +L ++S CLGC
Sbjct: 494 VNNPMPQHGGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAE 553
Query: 590 DPLGCHAVQDDIQSLMNDNLL----------TVSDVCVI-------------VPVFHDPP 626
GC ++ IQ +M++ L TVS + + P + P
Sbjct: 554 SENGCDQLRTGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGRGQRVVSAPATNGTP 613
Query: 627 IK-SVPLKKNAEPLVIRLPGPIPYVSDKAVPYKYNATIIEN-----------------GV 668
+ SVP+ +A P I G + +AVP+KY+ N G+
Sbjct: 614 VTISVPVTISA-PTTIAASGRRAVENSRAVPWKYDNAYRSNRRAESQTRPVNQAPVTIGL 672
Query: 669 --EVPLASFATVSNIAEGTSAALRSGKVRPPLFQKKVATPITPPFEEATP------TVVS 720
VP V N+ G RSG++ P P+ EA VV
Sbjct: 673 PNRVPATVGPAVDNVG-GPGGFTRSGRLFAP-------QPLRDNNAEALAKAKGKQAVVE 724
Query: 721 PIATDVNQPGKSIEDSNLDEILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLL 780
P S E +++E ++IIK+SDYKIVDQL QTPSKIS+LSLLL SEAHRN LL
Sbjct: 725 EEPVQKEAPEGSFE-KDVEEFMKIIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALL 783
Query: 781 KVLEQAYVDHEVTVDRFGGIVGNITACNNLWFSEEELPEVGKSHNLALHISVNCKSDLIS 840
K+L AYV E++V++ G++ N++ + + F+ +L G++HN ALHI++ CK ++S
Sbjct: 784 KMLNLAYVPQEISVNQLEGVMANVSTRHGVGFTNLDLTPEGRNHNKALHITMECKGAVLS 843
Query: 841 NVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENF 900
+VLVDTGSSLNV+PK L ++ G L S +V+AFDGS+++V GE+ LP+ IGPE F
Sbjct: 844 HVLVDTGSSLNVLPKQILKKIDVEGFVLTPSDLIVRAFDGSKRSVCGEVTLPVKIGPEVF 903
Query: 901 LITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFIRNGKLVTVHGEEAYLVSQLTS 960
I F VMDI +YSCLLGRPWIH AGAV+STLHQKLK++ NG++VTV GEE LVS L+S
Sbjct: 904 DIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSS 963
Query: 961 FSCIEA-GSAEGT---AFQGLTIEG---AEPKKAGAAMASLKDAQKVIQEGQTAGWGKVI 1013
F +E G T AF+ + +E AE +K GA++ S K A++V+ G+ GWGK++
Sbjct: 964 FKYVEVDGEIHETLCQAFETVALEKVAYAEQRKPGASITSYKQAKEVVDSGKAEGWGKMV 1023
Query: 1014 QLCENKRKEGLGFSPSSRVSSG-----VFHSAGFVNAISEEATGSG-----------LRP 1057
L + K G+G+ P +G F SAG +N ATGS +RP
Sbjct: 1024 YLPVKEDKFGVGYEPLQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRP 1083
Query: 1058 VFVTPGGIARDWNAIDVPSIMHVSELNHNKPVEHSNPTVPPSFDFPVYEAEDEEGDD--I 1115
PGG +W A +V + ++E + +++ F P+Y+AE+E +D +
Sbjct: 1084 C--APGGSINNWTAEEVVQVTLLTESDLMAFTMNNSVMAQYDFGNPIYQAEEESEEDCEL 1141
Query: 1116 PYEITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDI 1175
P E+ RLL QE++ IQPHQEE+E+VN+GTE+ KREIKIGA LE+ VK+++I++LREY +I
Sbjct: 1142 PAELVRLLRQEERVIQPHQEELEVVNLGTEDAKREIKIGAALEDSVKRRLIEMLREYVEI 1201
Query: 1176 FAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTV 1235
FAWSY+DMPGLD IV H++P + CP V+QKLRRT PDMA KIK EVQKQ DAGFL
Sbjct: 1202 FAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQKQWDAGFLAVT 1261
Query: 1236 EYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDG 1295
YP WVANIVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPHIDVLVDNTAQS VFSFMDG
Sbjct: 1262 SYPPWVANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVFSFMDG 1321
Query: 1296 FSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEV 1355
FSGYNQIKM+PED EKT+FITPWGTF YKVMPFGL NAGATYQR MTTLFHDM+HKE+EV
Sbjct: 1322 FSGYNQIKMAPEDMEKTTFITPWGTFYYKVMPFGLKNAGATYQRAMTTLFHDMMHKEIEV 1381
Query: 1356 YVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVD 1415
YVDDMI KS EE+H+ L K+F+RLRK+KLRLNPNKCTFGVRSGKLLGFIVS+KGIEVD
Sbjct: 1382 YVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLLGFIVSEKGIEVD 1441
Query: 1416 PDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQ 1475
P KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC PIFKLLRKNQ I WND+CQ
Sbjct: 1442 PAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCEPIFKLLRKNQAIKWNDDCQ 1501
Query: 1476 EAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKF 1535
+AFD IK YL +PPIL PPV GRPLIMYL+V + SMGCVLGQ DE+G+KEHAIYYLSKKF
Sbjct: 1502 KAFDKIKEYLQKPPILTPPVPGRPLIMYLSVTENSMGCVLGQHDESGRKEHAIYYLSKKF 1561
Query: 1536 TDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQM 1595
TDCETRY++LEKTCCALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK A+TG++ARWQM
Sbjct: 1562 TDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPALTGRVARWQM 1621
Query: 1596 LLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEG 1655
+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPDE+IMYLK KDCEEPL+ EG
Sbjct: 1622 ILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKVKDCEEPLVEEG 1681
Query: 1656 PDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEE 1715
PDP KW L+FDGAVN G G+GAV+++P+G HIPF+AR+ F+ TNN AEYEACI GIEE
Sbjct: 1682 PDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHIPFSARLTFDVTNNEAEYEACIMGIEE 1741
Query: 1716 AIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDEN 1775
AID+RIK LDIYGDSALV+NQ+ G+W T+ LIPYRDY RR+LT+F KV L+H+PRDEN
Sbjct: 1742 AIDLRIKTLDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVRLYHVPRDEN 1801
Query: 1776 QMADALATLSSM 1787
QMADALATLSSM
Sbjct: 1802 QMADALATLSSM 1813
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 907 bits (2343), Expect = 0.0
Identities = 481/1140 (42%), Positives = 687/1140 (60%), Gaps = 37/1140 (3%)
Query: 1118 EITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFA 1177
++ L+Q QP +E+ +N+GTE++ R I + L E ++ L E+ D FA
Sbjct: 1759 DVAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTEEEREDYRSFLMEFRDCFA 1818
Query: 1178 WSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEY 1237
W+Y++MPGLD + H++ P+ PV+Q RR P+ ++ +EV + I+ GF+ ++Y
Sbjct: 1819 WTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVGFIKEIQY 1878
Query: 1238 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1297
P W+ANIVPV KK+G+VR+CVDFRDLN+A PKD+FPLP +++VD+T S
Sbjct: 1879 PRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTG------YGALS 1932
Query: 1298 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1357
GYNQIKM D T+F TP G F Y VMPFGL NAGATYQR M + D+IH VE YV
Sbjct: 1933 GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLDDLIHHSVECYV 1992
Query: 1358 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1417
DDM+VK+ D E H E L +FERLR+++L++NP KC F V+SG LGF++ +GIE++P
Sbjct: 1993 DDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPK 2052
Query: 1418 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEA 1477
K++AI MP PQ K +R G+L YI RFIS+++ P KL++K P VW++ECQ
Sbjct: 2053 KIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVWDEECQNG 2112
Query: 1478 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTD 1537
FDSIK YLL PP+L PV+GRPLI+Y+A S+G +L Q ++ G KE A YYLS+
Sbjct: 2113 FDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEG-KEVACYYLSRTMVG 2171
Query: 1538 CETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLL 1597
E Y+ +EK C AL +A K+LRHY++ H LI+R DPI+Y+ + +TG++ +W +L+
Sbjct: 2172 AEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTGRLGKWALLM 2231
Query: 1598 SEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPD 1657
EYDI F QKAIKG LA+ LA P+ D P+ + PDEEI + ++
Sbjct: 2232 MEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEIFTAELQE----------- 2280
Query: 1658 PISKWGLVFDGA----VNAYG-----KGIGAVIVSPQGHHIPFTARIL-FECTNNMAEYE 1707
+W L FDGA +N G G G V +PQG I + +L EC+NN AEYE
Sbjct: 2281 ---QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEECSNNEAEYE 2337
Query: 1708 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1767
A IFG+ A+ M ++ L +GDS L+I QI +E +L+PY ARRL+ F +E+
Sbjct: 2338 ALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRLMDKFEHIEV 2397
Query: 1768 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY 1827
H+PR +N ADALA L++ N I+ +R P+ + I + ++ N +
Sbjct: 2398 IHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAVLELIPEEVNIIITNSAEE 2457
Query: 1828 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDM-VLLRCVDEHE 1886
W + P +++ L+R ++ +LYKR+Y VLLRCVD E
Sbjct: 2458 EDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVLYKRSYGQEVLLRCVDRSE 2515
Query: 1887 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVP 1946
A +++ +VH G G H +G M + GYYW + DC + A+ CH CQI+ + H P
Sbjct: 2516 ANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQP 2575
Query: 1947 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 2006
P L+ WPF WGID+IG I P +S GHRFIL A DYF+KW EA V V
Sbjct: 2576 PAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSSDVI 2635
Query: 2007 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 2066
F++ +II R+GVP +I +DN + + E++KI+ + S+ Y PQ NG EA NK
Sbjct: 2636 NFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAFNK 2695
Query: 2067 NIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2125
+ +I++K V + +DWH+ L AL YR TVR+ T ATP+SLVYG EAVLPLE+++PSL
Sbjct: 2696 TLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPLEIQLPSL 2755
Query: 2126 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGE- 2184
RV + +L++ E + R+ +L+ +EE+R+ A+ + Y+ M A+DK V R F+ GE
Sbjct: 2756 RVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNMVRAYDKLVKQRVFRKGEL 2815
Query: 2185 -LVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2243
LVL+R I +GK+ P +EGPYV+++A+ GGA L G + P+N +KKYF
Sbjct: 2816 VLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPINGRFLKKYF 2875
Score = 114 bits (284), Expect = 5e-23
Identities = 79/257 (30%), Positives = 124/257 (47%), Gaps = 15/257 (5%)
Query: 683 EGTSAALRSGKVRPPLFQKKVATPITPPFEEATPTVVSPIATDVNQPGKSIEDSNLDEIL 742
E + +LR GK P + KV + P ++A+P +P A + K
Sbjct: 1252 EEVNISLRGGKTLPDPHKSKVPN-VDKPAKKASPPGEAPEAPETKTGSKEKP-------- 1302
Query: 743 RIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRNTLLKVLEQAYVDHEVTVDRFGGIVG 802
DYK++ L + P+ +SV L+ R L+K L+ V +EV + + +
Sbjct: 1303 ----AVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEV-YEVDMAKHR-LYD 1356
Query: 803 NITACNNLWFSEEELPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLS 862
N N + F++E+ G HN L+I N S + +L+D GS++N++P +L +
Sbjct: 1357 NPLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAG 1416
Query: 863 YRGTPLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLITFQVMDINASYSCLLGRPWI 922
+ L ++ FD K LG I + I + +F + F V++ N SYS LLGRPWI
Sbjct: 1417 FTTKDLEPIDVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWI 1476
Query: 923 HDAGAVTSTLHQKLKFI 939
H V STLHQ LKF+
Sbjct: 1477 HKYRVVPSTLHQCLKFL 1493
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 770 bits (1987), Expect = 0.0
Identities = 435/1117 (38%), Positives = 636/1117 (55%), Gaps = 49/1117 (4%)
Query: 1138 ELVNIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPT 1197
E+VNI + R + +GA + ++ ++I LL+ FAWS EDM G+DP I H++
Sbjct: 759 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 818
Query: 1198 KPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 1257
P PV+QK R+ P+ A + EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 819 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 878
Query: 1258 VDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 1317
VD+ DLNKA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 879 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 938
Query: 1318 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKM 1377
GT+CYKVM FGL NAGATYQR + + D I + VEVY+DDM+VKS E HVE+L+K
Sbjct: 939 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 998
Query: 1378 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 1437
F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+ ++V+
Sbjct: 999 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058
Query: 1438 LGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEG 1497
GR+ ++RFIS T C P + LL++ W+ + +EAF+ +K+YL PPILV P G
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1118
Query: 1498 RPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 1557
L +Y+AV D ++ VL ++D ++ I+Y SK + ETRY ++EK A+ +A+
Sbjct: 1119 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1176
Query: 1558 RLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILAD 1617
+LR Y +HT +++ P++ + +G++ +W + LSEYDI F+ + A+K +LAD
Sbjct: 1177 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1235
Query: 1618 HLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISKWGLVFDGAVNAYGKGI 1677
L PL + EE W L DG+ +A G GI
Sbjct: 1236 FLIELPLQSAERAVSGNRGEE-----------------------WSLYVDGSSSARGSGI 1272
Query: 1678 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1737
G +VSP + + R+ F TNN+AEYE I G+ A M+I + + DS L+ Q+
Sbjct: 1273 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1332
Query: 1738 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV- 1796
GE+E + K+ Y + + F +L IPR +N ADALA L+ + +D+
Sbjct: 1333 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDLR 1388
Query: 1797 PIIKVQRLERPS-----HVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQD 1851
II V+ +++PS V + + + D W +I+ +L G D
Sbjct: 1389 RIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYL-----SDGTLPSD 1443
Query: 1852 KKTLRRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTM 1908
K T RRL A ++ L + L K + +L C+ E ++M + H+G G H+ G +
Sbjct: 1444 KWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRAL 1503
Query: 1909 SRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIG 1968
+ KL + G+YW TM DC + KC +CQ +A IH P L +P+PF W +D++G
Sbjct: 1504 ALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVG 1563
Query: 1969 RIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNG 2028
+ AS RFILV DYFTKWVEA SY + V F+ IICR+G+P +IITDNG
Sbjct: 1564 PM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNG 1621
Query: 2029 TNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLP 2087
+ + + C +KI + S+P PQ NG EA NK I ++K + K W + L
Sbjct: 1622 SQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELD 1681
Query: 2088 YALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLN 2147
L YRTT RS+T TPF+ YGMEA+ P EV SLR M K E + D+L+
Sbjct: 1682 GVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLD 1740
Query: 2148 LIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGKWTPNYE 2206
+EE R A+ R Q+YQ +++KVH R F VG+LVL++ + GK N+E
Sbjct: 1741 DLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWE 1800
Query: 2207 GPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2243
G Y V K G L M G +P N+ +K+Y+
Sbjct: 1801 GSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837
Score = 72.8 bits (177), Expect = 1e-10
Identities = 47/176 (26%), Positives = 83/176 (46%), Gaps = 7/176 (3%)
Query: 812 FSEEELPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRS 871
F++ +L + HN L + + ++ VL+DTGSS++++ K L ++ ++
Sbjct: 602 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 661
Query: 872 TFLVKAFDGSRKNVLGEIDLPITIGPENFLITFQVMDINASYSCLLGRPWIHDAGAVTST 931
+ + FDG +G I LPI +G + F V+ A Y+ +LG PWIH A+ ST
Sbjct: 662 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 721
Query: 932 LHQKLKFIRNGKLVTVHG-------EEAYLVSQLTSFSCIEAGSAEGTAFQGLTIE 980
HQ +KF + + T+ +Y S+L + ++ T G+ E
Sbjct: 722 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAE 777
Score = 44.7 bits (104), Expect = 0.037
Identities = 41/219 (18%), Positives = 92/219 (41%), Gaps = 5/219 (2%)
Query: 132 TIEERMAELAKELRREIKANRGNGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQN 191
TI E +++ + + +R ++ +T ++ V + K+ + + YNG P+
Sbjct: 174 TISEMSSKIHRATSTAPELDRVLEETQQTPFTRRITNVSIRGAQKI-KLESYNGRNDPKE 232
Query: 192 HIVKY---VRKMGNYKDN-DSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSH 247
+ + + + DN D+ F + L A W++ L + + +F +L ++F H
Sbjct: 233 FLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSIDSFHQLTSSFLKH 292
Query: 248 YGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDY 307
Y + + L S+SQ +ES R + R++ IT + + +
Sbjct: 293 YAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDEAAIVALRNAVWYDSRF 352
Query: 308 VERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 346
+ + + AP+ + + +R E + +I+ K S+
Sbjct: 353 RDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNST 391
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 766 bits (1978), Expect = 0.0
Identities = 419/1063 (39%), Positives = 618/1063 (57%), Gaps = 39/1063 (3%)
Query: 1183 MPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 1242
M G+ P I H++ PVRQ++RR HPD I++E+ K ++AGF+ V YP+W+A
Sbjct: 1 MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60
Query: 1243 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1302
N+V VPKK+GK R+CVD+ +LN A PKD+FPLP ID +VD+T+ + SF+D FSGY+QI
Sbjct: 61 NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120
Query: 1303 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1362
MSP+D EK +FITP +CYKVMPFGL NAGATYQR MT +F +I VEVY+DD++V
Sbjct: 121 PMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVV 180
Query: 1363 KSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1422
KS EQH+ +L ++F LR+Y ++LNP+KC FGV + K LGF+VSQ+GIEV PD+V+A+
Sbjct: 181 KSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAV 240
Query: 1423 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 1482
E P P+ +K+++ G+L + RFI+ P F +RK W D CQ A + IK
Sbjct: 241 METPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIK 300
Query: 1483 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1542
+YL++PPIL P+ L MYLAV + ++ VL + + K++ IYY+S+ D ETRY
Sbjct: 301 HYLMQPPILSSPIPKEKLYMYLAVSEWAISAVL-FRCPSPKEQKPIYYVSRALADVETRY 359
Query: 1543 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDI 1602
+ +E AL AA++LR Y H ++ P++ I K +TG++ +W + LSE+ I
Sbjct: 360 SKMELISLALRSAAQKLRPYFQAHPV-IVLTDQPLRNILHKPDLTGRMLQWAIELSEFGI 418
Query: 1603 VFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISKW 1662
F+ + ++KG ++AD + +E+ +P +EG W
Sbjct: 419 EFQPRLSMKGQVMADFV----------LEYS--------------RKPGQHEGSRKKEWW 454
Query: 1663 GLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1722
L DGA + G G+G ++ SP G H+ R+ F +NN AEYEA + G++ A+ + +
Sbjct: 455 TLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVS 514
Query: 1723 HLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALA 1782
L I+ DS LV+ ++ E+E A++ Y R L FT+ + I R +N+ ADALA
Sbjct: 515 KLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALA 574
Query: 1783 TLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSRE 1842
+++ + +P I VQ S + + D + W DI +++ +
Sbjct: 575 GIAASLSIKEAILLP-IHVQTNPSVSEI----SICSTTEAPQADDQEWMNDITEYIRTGT 629
Query: 1843 YPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTH 1902
PG KQ K +R A RF L G LYKR++ LRC+ EA+ ++ ++H+G +G H
Sbjct: 630 L-PGDPKQAHK-VRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNH 687
Query: 1903 ATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW 1962
+ G +++ + GYYW TM+ + Y ++C KCQ YA H+P L +S PWPF+ W
Sbjct: 688 SGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQW 747
Query: 1963 GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSK 2022
G+D++ R P A +F+LVA DYF+KWVEA +Y + + V KF+ NIICR+G+P
Sbjct: 748 GMDIV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQT 806
Query: 2023 IITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-D 2081
II DNG ++ + C E I + S+P PQ NG EA NK + ++K + K
Sbjct: 807 IIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGK 866
Query: 2082 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2141
W E LP L YRTT TG TPF+L YGM+AV+P+E+ +P++ AK S+A
Sbjct: 867 WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWT-NAAKQSDANMQLG 925
Query: 2142 RYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPD-PRGK 2200
R L+ +E R A R YQ R +++KV PR K G LVL++ + GK
Sbjct: 926 R--NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGK 983
Query: 2201 WTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2243
+ N+EGPY+V KA GA L +DG L P N +K+Y+
Sbjct: 984 FQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 756 bits (1951), Expect = 0.0
Identities = 420/1105 (38%), Positives = 635/1105 (57%), Gaps = 66/1105 (5%)
Query: 1146 ENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPTKPECPPVR 1205
++ EI I + +G + +I+LL+E+ D F W Y +MPG IVEH++P KP P +
Sbjct: 528 DDLEEIDISPAIGQG-RHLLIELLKEFRDCFTWEYYEMPGHSRSIVEHRLPLKPGVRPHQ 586
Query: 1206 QKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1265
Q RR DM +K+E+++ DAGF+ Y EWV++IVPV KK+GKVR+C+DFR LNK
Sbjct: 587 QLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRYLNK 646
Query: 1266 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPW--GTFCY 1323
A+PKD +P+ D LVD + K+ SFMDG +GYNQI M+ ED KT+F P G F +
Sbjct: 647 ATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIFMAEEDIHKTTFRCPGAIGLFEW 706
Query: 1324 KVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRK 1383
V+ F L +AGATYQR M ++HD+I VEVY+DD++VKS + E H+ L K+FER RK
Sbjct: 707 VVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRK 766
Query: 1384 YKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNY 1443
Y L++NP KC FGV +G+ LGF+V ++GIEV + AI+++ P+ + +++ +G++N+
Sbjct: 767 YGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINAIKKIKPPEDKTELQEMIGKINF 826
Query: 1444 ISRFISHMTATCGPIFKLLR--KNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLI 1501
+ RFIS ++ P LLR +Q W E Q+A D+IK YL PP+L+PP +G P
Sbjct: 827 VRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALDNIKEYLSSPPVLIPPQKGIPFR 886
Query: 1502 MYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRH 1561
+YL+ D+S+ VL Q+ E +KE ++YLS++ + ETRY+ +EK C L ++ RLRH
Sbjct: 887 LYLSAGDKSISSVLIQELE--RKERVVFYLSRRLLNAETRYSPVEKLCLCLYFSCTRLRH 944
Query: 1562 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1621
YL+++ +I + D +KY+ + G+I +W L+E+D+ +++ KAIKG +A+ +
Sbjct: 945 YLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEFDLRYESPKAIKGQAIANFIV- 1003
Query: 1622 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISKWGLVFDGAVNAYGKGIGAVI 1681
D+ D+ I G + W L FDG+V +G GIG VI
Sbjct: 1004 -----------DYRDDSI---------------GSVEVVPWTLFFDGSVCTHGCGIGLVI 1037
Query: 1682 VSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEW 1741
+SP+G F I TNN AEYEA + G++ ++ ++I GDS LVI+Q+ GE+
Sbjct: 1038 ISPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEY 1097
Query: 1742 ETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKV 1801
E + LI Y + + L+ F V L H+ R++N A+ LA +S +++ +IK
Sbjct: 1098 ECKNDTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGASGYKL-------MIKH 1150
Query: 1802 QRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1861
++E V+ W Y + Q+L S+ + LR A +
Sbjct: 1151 VQIEVA----------------VITADDWRYYVYQYLQD------PSQSASRKLRYKALK 1188
Query: 1862 FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMT 1921
++L D LY R D VLL+C+ +A+ + +VH+G GTH + H M L AGY+W T
Sbjct: 1189 YILLDDELYYRTIDGVLLKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPT 1248
Query: 1922 MEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFI 1981
M DC++Y + C CQ + P A+N + PWPF WGIDMIG I P +S GH+FI
Sbjct: 1249 MLEDCFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFI 1308
Query: 1982 LVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCE 2041
LVA DYFTKWVEA V +F++ +II R G+P I TD G+ ++ +
Sbjct: 1309 LVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFAD 1368
Query: 2042 EFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSS 2100
I+ NSSPY Q NG EA+NK++ +++++ ++ Y + WH L AL YR S
Sbjct: 1369 SMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMACHGS 1428
Query: 2101 TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARG 2160
P+ LVY +A+LP EV I S R ++ L+ E+ D+ + + R+ A+A+
Sbjct: 1429 IQVPPYKLVYRHKAILPWEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRALAKV 1488
Query: 2161 QSYQARMKTAFDKKVHPREFKVGELVLK--RRISQQPDPRGKWTPNYEGPYVVKKAFSGG 2218
+ R+ ++KKV P++F GEL+ K I + GKW+PN+EGP+ + K S G
Sbjct: 1489 IKDKERVTRHYNKKVVPKDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKG 1548
Query: 2219 ALILTHMDGVELPNPVNADIVKKYF 2243
A +L +DG +N +KKY+
Sbjct: 1549 AYMLQGLDGEVYDRALNGKYLKKYY 1573
Score = 76.6 bits (187), Expect = 9e-12
Identities = 52/186 (27%), Positives = 95/186 (50%), Gaps = 4/186 (2%)
Query: 816 ELPEVGKSHNLA-LHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFL 874
E PE ++ +L L+I+ +S ++VD G+++N+MP T +L L ++ +
Sbjct: 351 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 410
Query: 875 VKAFDGSRKNVLGEIDLPITIGPENFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 934
+K F G+ +G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 411 LKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQ 470
Query: 935 KLKFIRNGKLVTVHGEEAYLVSQLTSFSCIEAGSAEGTAFQGLTIEGAEPKKAGAAMASL 994
L + K+ V ++ L + S+ C E + T++ + K+ G + S
Sbjct: 471 CLIQWQGDKIEIVPA-DSQLKMENPSY-CFEGVMEGSNVYTKDTVDDLDDKQ-GQGLMSA 527
Query: 995 KDAQKV 1000
D +++
Sbjct: 528 DDLEEI 533
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 702 bits (1811), Expect = 0.0
Identities = 411/1142 (35%), Positives = 614/1142 (52%), Gaps = 59/1142 (5%)
Query: 1116 PYEITRLLEQEKKAIQPHQEEIELVNIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1174
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 891 PRGVLSLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESA----LITFLQNNKD 946
Query: 1175 IFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1234
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 947 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1006
Query: 1235 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1294
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1007 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1066
Query: 1295 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1354
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1067 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1126
Query: 1355 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1414
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1127 AYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1186
Query: 1415 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDEC 1474
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1187 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1246
Query: 1475 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1530
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1247 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1306
Query: 1531 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1590
+S+ D +TRY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1307 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1365
Query: 1591 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1650
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1366 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1411
Query: 1651 LINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1710
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1412 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 1711 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 1770
G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 1771 PRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPW 1830
R N+ AD LA S R +DV V+ L P+ + V+ W
Sbjct: 1521 LRHNNEAADRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQDADTHDVVMVEADW 1576
Query: 1831 YYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEA 1887
+FL S+E P QDK R++ R +++ LYK++ +L RCV E
Sbjct: 1577 REPFIRFLSSQELP-----QDKDEAERISRRSKLYVMHESELYKKSPSGILQRCVSLEEG 1631
Query: 1888 EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPP 1947
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1632 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 1691
Query: 1948 HALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 2007
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1692 QELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARD 1750
Query: 2008 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKN 2067
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1751 FF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGM 1809
Query: 2068 I-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2122
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1810 ILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEF 1869
Query: 2123 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKV 2182
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F V
Sbjct: 1870 ESLRF---RNFREERYEEDRVDDLHRLEEAREAALIQSARYLQGLRRYHNRNVRSRAFLV 1926
Query: 2183 GELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2242
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + ++++
Sbjct: 1927 GDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1984
Query: 2243 FA 2244
+A
Sbjct: 1985 YA 1986
Score = 53.9 bits (128), Expect = 6e-05
Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 416 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 472
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 473 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 531
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
REY +R+ +I+ + ++ + F K ++ + + P T+ E+A
Sbjct: 532 REYIRRFSEQRNKISD-ISDDVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 585
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKETEVG 366
+ KAE +V ASK+ G K G
Sbjct: 586 NE-----YAKAEDAVTASKQSGPSWKPKNTPATG 614
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 700 bits (1807), Expect = 0.0
Identities = 414/1144 (36%), Positives = 616/1144 (53%), Gaps = 63/1144 (5%)
Query: 1116 PYEITRLLEQEKKAIQPHQEEIELVNIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1174
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 891 PRGVLTLRSDIKQAVTCDKESCDMAQTREIASAREEIRLAATTESA----LITFLQNNKD 946
Query: 1175 IFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1234
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 947 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1006
Query: 1235 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1294
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1007 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1066
Query: 1295 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1354
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1067 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1126
Query: 1355 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1414
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1127 AYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1186
Query: 1415 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDEC 1474
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1187 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1246
Query: 1475 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1530
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1247 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1306
Query: 1531 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1590
+S+ D + RY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1307 VSEVLADSKARYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1365
Query: 1591 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1650
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1366 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1411
Query: 1651 LINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1710
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1412 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 1711 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 1770
G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 1771 PRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPS--HVFAIGDVIDQAGENVVDYR 1828
R N+ AD LA S R +DV V+ L P+ H D D +V+
Sbjct: 1521 LRHNNEAADRLANFGSK-RETAPSDV---FVEHLYTPTVPHKDTTQDA-DTRNIAMVE-A 1574
Query: 1829 PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEH 1885
W +FL S+E P QDK R++ R ++L LYK++ +L RCV
Sbjct: 1575 DWREPFIRFLTSQELP-----QDKDEAERISRRSKLYVLHESELYKKSPSGILQRCVSLE 1629
Query: 1886 EAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHV 1945
E QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+
Sbjct: 1630 EGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHL 1689
Query: 1946 PPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVV 2005
P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1690 PAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNA 1748
Query: 2006 AKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAAN 2065
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1749 RDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERAN 1807
Query: 2066 KNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2120
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EV
Sbjct: 1808 GMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEV 1867
Query: 2121 EIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREF 2180
E SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F
Sbjct: 1868 EFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAF 1924
Query: 2181 KVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVK 2240
VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + ++
Sbjct: 1925 LVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLR 1982
Query: 2241 KYFA 2244
+++A
Sbjct: 1983 RFYA 1986
Score = 52.8 bits (125), Expect = 1e-04
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 416 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 472
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 473 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 531
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 532 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 585
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKETEVG 366
+ KAE +V ASK+ G K G
Sbjct: 586 NE-----YAKAEDAVTASKQSGPSWKPKNTPATG 614
Score = 47.4 bits (111), Expect = 0.006
Identities = 33/104 (31%), Positives = 50/104 (47%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTF-LVKAFDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LG P + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGHPALAKFMAVPHYTYMMMK 887
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 700 bits (1806), Expect = 0.0
Identities = 406/1139 (35%), Positives = 613/1139 (53%), Gaps = 53/1139 (4%)
Query: 1116 PYEITRLLEQEKKAIQPHQEEIELVNIGTEENKRE-IKIGATLEEGVKQKIIQLLREYPD 1174
P + L K+A+ +E ++ + RE I++ AT E +I L+ D
Sbjct: 896 PRGVLTLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESA----LITFLQNNKD 951
Query: 1175 IFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1234
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 952 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1011
Query: 1235 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1294
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1012 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1071
Query: 1295 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1354
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1072 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1131
Query: 1355 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1414
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1132 AYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1191
Query: 1415 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDEC 1474
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1192 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1251
Query: 1475 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1530
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1252 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1311
Query: 1531 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1590
+S+ D +TRY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1312 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1370
Query: 1591 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1650
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1371 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1416
Query: 1651 LINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1710
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1417 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1465
Query: 1711 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHI 1770
G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+
Sbjct: 1466 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1525
Query: 1771 PRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPW 1830
R N+ AD LA S R +DV V+ L P+ + + + W
Sbjct: 1526 LRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQVADTHDIAMVEADW 1581
Query: 1831 YYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQL 1890
+ +FL S+E P K + + + R + +++ LYK++ +L RCV E QL
Sbjct: 1582 REPLIRFLTSQELP--QYKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1639
Query: 1891 MHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHAL 1950
+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P L
Sbjct: 1640 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1699
Query: 1951 NVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIK 2010
+ WPF++WG+DM+G + KA G+ + +AID F+KW+EA +T F
Sbjct: 1700 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFMAIDKFSKWIEAKPVVTITADNARDFF- 1757
Query: 2011 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-- 2068
NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1758 INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1817
Query: 2069 ---KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2125
R+ ++ W LP L RTT +TG +PF LVYG EA+LP EVE SL
Sbjct: 1818 RIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1877
Query: 2126 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGEL 2185
R E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+L
Sbjct: 1878 RF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1934
Query: 2186 VLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2244
VL++ Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1935 VLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHIRRFYA 1991
Score = 53.9 bits (128), Expect = 6e-05
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 421 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 477
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 478 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 536
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
REY +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 537 REYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 590
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKETEVG 366
+ KAE +V ASK+ G K G
Sbjct: 591 NE-----YAKAEDAVTASKQSGPSWKPKNTPATG 619
Score = 49.3 bits (116), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKSSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 699 bits (1805), Expect = 0.0
Identities = 395/1098 (35%), Positives = 622/1098 (55%), Gaps = 56/1098 (5%)
Query: 1151 IKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRR 1210
I IG LE+ ++++I+++++E +FAWS +++ G+D ++EH + K P +QKLRR
Sbjct: 956 ILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRR 1015
Query: 1211 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1270
D K E++K + A + V +PEW+AN V V K +GK RMC+DF DLNKA PKD
Sbjct: 1016 MSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKD 1075
Query: 1271 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1330
+FPLP ID LVD TA ++ SF+D +SGY+Q+ M ED EKTSFITP+GT+C+ MPFGL
Sbjct: 1076 DFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGL 1135
Query: 1331 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 1390
NAGAT+ R + + + + VE Y+DD++VKS H + L + FE LRK ++LNP
Sbjct: 1136 KNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNP 1195
Query: 1391 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1450
KC FGVR+GKLLGF+VS++GIE +PDK+ AI +M P+ ++V+ GR+ +SRF+S
Sbjct: 1196 EKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSK 1255
Query: 1451 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1510
P FK LR W ECQ+AFD +K YL E P L P +G+PL+MY+A +
Sbjct: 1256 SAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPAT 1315
Query: 1511 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1570
+ VL Q++E ++ +Y++S+ +TRY+ +EK A+ A+++LRHY ++H +
Sbjct: 1316 VSAVLVQEEE--NRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITI 1373
Query: 1571 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPI 1630
S PI + V G+IA+W M L +D+ + ++ AIK +LAD +A ++ P
Sbjct: 1374 PSAY-PIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVA-----EWTPN 1427
Query: 1631 EFDFPDEEIMYLKSKDCEEPLINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIP 1690
E + + ++ ++P W + DGA NA G G AV+ +P +
Sbjct: 1428 EVE---------QQEEVKKP-----------WIVFSDGACNAAGAGAAAVVKTPMKQTLK 1467
Query: 1691 FTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIP 1750
++ +++F TNN AEYE + + +A + + L + DS LV +E +
Sbjct: 1468 YSVQLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAK 1527
Query: 1751 YRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFR--VNHWNDVPIIKVQRLERPS 1808
Y + AR +F + + I R+EN AD LA ++ + N + D+ + +PS
Sbjct: 1528 YLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENSFFDI-------ITQPS 1580
Query: 1809 HVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDI 1868
+ I + G+ W I ++L+S + P +++ K ++ ++ ++ +
Sbjct: 1581 YEKKEVACIQREGD-------WREPILKYLVSAQLP--EKEEEAKRIQLMSKKYKVVEGQ 1631
Query: 1869 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQ 1928
LYK LL+CV E +++ ++H+G G H +++ K++R G YW T+ D +
Sbjct: 1632 LYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEK 1691
Query: 1929 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1988
Y + C CQ + PP L + WPF WGID++G + P+A RF++VAI+YF
Sbjct: 1692 YIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPL-PRAKGDLRFVIVAIEYF 1750
Query: 1989 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 2048
++W+EA + +T V KF+ NIICR+G+P +I+ DNG + Q +C+ ++ +
Sbjct: 1751 SRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQIN 1810
Query: 2049 NSSPYRPQMNGAVEAANKNIKRIVQKMV--TTYKDWHEMLPYALHGYRTTVRSSTGATPF 2106
+S PQ NG VE AN I ++K + + W E L L RTTV STG TPF
Sbjct: 1811 FASVGHPQTNGVVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPF 1870
Query: 2107 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQAR 2166
LVYG EA+ P EV S R+I + K E R L +++E R++A+ + SY
Sbjct: 1871 RLVYGDEAMTPSEVGAHSPRMIFDQKDEE-----GREITLEMLDEIRVEALEKMASYTEG 1925
Query: 2167 MKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMD 2226
K+ +++KV R + G+LVLK+ +++ GK +EGP++VKK GA L ++D
Sbjct: 1926 TKSYYNQKVKTRPIEEGDLVLKKVLNEV--AVGKLESKWEGPFIVKKKTETGAFKLAYLD 1983
Query: 2227 GVELPNPVNADIVKKYFA 2244
G EL + NA +KK++A
Sbjct: 1984 GEELKHTWNAVSLKKFYA 2001
Score = 45.4 bits (106), Expect = 0.022
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 812 FSEEELPEVGKSHNLALHISVNCKSDLISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRS 871
F E+ + H L +SV + VL+D GSS +V+ ++ L +
Sbjct: 760 FGPEDAEGILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNA 819
Query: 872 TFLVKAFDGSRKNVLGEIDLPITIGPENFL----ITFQVMDINASYSCLLGRPWIHDAGA 927
++ F G + + +G+I L + G + I F V+D+ Y+ +LGR I+ A
Sbjct: 820 GVPLQGFGGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEA 879
Query: 928 VTSTLHQKLKFIRNGKLVTVHGEE 951
+ + +K ++TV GE+
Sbjct: 880 IIHHNYICMKLPGLRGVITVRGEQ 903
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 697 bits (1798), Expect = 0.0
Identities = 413/1131 (36%), Positives = 607/1131 (53%), Gaps = 62/1131 (5%)
Query: 1134 QEEIELVNIGTEENK-REIKIGATLEEGVKQKIIQLLREYP-------DIFAWSYEDMPG 1185
+E+I L E + KI + E K K I L P DIFAW DMPG
Sbjct: 925 REDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDPTKTANNKDIFAWKPSDMPG 984
Query: 1186 LDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIV 1245
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 985 IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1044
Query: 1246 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1305
V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 1045 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 1104
Query: 1306 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1365
D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YVDD++VK+
Sbjct: 1105 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1164
Query: 1366 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1425
++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M
Sbjct: 1165 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 1224
Query: 1426 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYL 1485
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K L
Sbjct: 1225 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLL 1284
Query: 1486 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1541
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1285 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1344
Query: 1542 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1601
Y ++K + ++L HY H+ +++ P+ I V G+IA+W + L D
Sbjct: 1345 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREVNGRIAKWALELMSLD 1403
Query: 1602 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISK 1661
I FK + +IK LAD +A ++ + D P E + +
Sbjct: 1404 ISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------------------- 1438
Query: 1662 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1721
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1439 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1498
Query: 1722 KHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1781
K L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R N+ AD L
Sbjct: 1499 KRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1558
Query: 1782 ATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSR 1841
A S R +DV V+ L P+ + + + W + +FL S+
Sbjct: 1559 ANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQVAGTHDAAMVEVDWREPLIRFLTSQ 1614
Query: 1842 EYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGT 1898
E P QDK R++ R ++L LYK++ +L RCV E QL+ D+H G
Sbjct: 1615 ELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGI 1669
Query: 1899 FGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWP 1958
G HA T+ K R G++W T D + R C CQ +A +IH+P L + WP
Sbjct: 1670 CGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWP 1729
Query: 1959 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 2018
F++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R+G
Sbjct: 1730 FAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFG 1787
Query: 2019 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQ 2073
VP++IITDNGT V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1788 VPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFD 1847
Query: 2074 KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2133
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1848 RLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNF 1904
Query: 2134 SEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQ 2193
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LVL++ Q
Sbjct: 1905 REERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQ 1962
Query: 2194 QPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2244
R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1963 TTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 2013
Score = 53.5 bits (127), Expect = 8e-05
Identities = 52/211 (24%), Positives = 95/211 (44%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 416 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 472
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 473 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 531
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 532 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 585
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G + K T
Sbjct: 586 NE-----YAKAEDAVTASKQSGPSWKQNKGT 611
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 785 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 844
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 888
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 696 bits (1797), Expect = 0.0
Identities = 412/1133 (36%), Positives = 607/1133 (53%), Gaps = 66/1133 (5%)
Query: 1134 QEEIELVNIGTEENKREI-KIGATLEEGVKQKIIQLLREYP-------DIFAWSYEDMPG 1185
+E+I L E + KI + E K K I L P DIFAW DMPG
Sbjct: 922 REDIRLAAATASEGEEPATKISKSGESEAKTKKIPLDPSDPAKTANNKDIFAWKPSDMPG 981
Query: 1186 LDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIV 1245
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 982 IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1041
Query: 1246 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1305
V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 1042 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLK 1101
Query: 1306 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1365
D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YVDD++VK+
Sbjct: 1102 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1161
Query: 1366 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1425
++ + L + F +R ++++LNP KCTFGV SGKL+GF+VS +GI+ +P+KV AI M
Sbjct: 1162 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNM 1221
Query: 1426 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYL 1485
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K L
Sbjct: 1222 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLL 1281
Query: 1486 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1541
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1282 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1341
Query: 1542 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1601
Y ++K + ++L HY H+ +++ P+ I G+IA+W + L D
Sbjct: 1342 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1400
Query: 1602 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISK 1661
I FK + +IK LAD +A ++ + D P E + +
Sbjct: 1401 ISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------------------- 1435
Query: 1662 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1721
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1436 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1495
Query: 1722 KHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1781
K L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R N+ AD L
Sbjct: 1496 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1555
Query: 1782 ATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY--RPWYYDIKQFLL 1839
A S V + + V+ L P+ D AG + V W + +FL
Sbjct: 1556 ANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQVAGTHDVAMVETDWREPLIRFLT 1609
Query: 1840 SREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHD 1896
S+E P QDK R++ R +++ LYK++ +L RCV E QL+ D+H
Sbjct: 1610 SQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLQDIHS 1664
Query: 1897 GTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSP 1956
G G HA T+ K R G++W T D + R C CQ +A +IH+P L +
Sbjct: 1665 GICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLS 1724
Query: 1957 WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICR 2016
WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R
Sbjct: 1725 WPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1782
Query: 2017 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRI 2071
+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1783 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1842
Query: 2072 VQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEA 2131
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1843 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---R 1899
Query: 2132 KLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRI 2191
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LVL++
Sbjct: 1900 NFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK-- 1957
Query: 2192 SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2244
Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1958 IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 2010
Score = 53.9 bits (128), Expect = 6e-05
Identities = 52/211 (24%), Positives = 96/211 (44%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 413 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 469
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 470 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 528
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P +T+ E+A
Sbjct: 529 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKP-----PMTVKLMFEKA 582
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G + K T
Sbjct: 583 NE-----YAKAEDAVTASKQSGPSWKQNKGT 608
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 782 LRRTLIDGGSALNILFAKTLDDMQIPHSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 841
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 842 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 885
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 694 bits (1791), Expect = 0.0
Identities = 400/1083 (36%), Positives = 590/1083 (53%), Gaps = 54/1083 (4%)
Query: 1174 DIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1233
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 972 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1031
Query: 1234 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1293
V +P+W+AN V V KK G+ MCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1032 EVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1091
Query: 1294 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1353
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1092 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1151
Query: 1354 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1413
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1152 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1211
Query: 1414 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1473
+P+KV AI M +P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1212 ANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPE 1271
Query: 1474 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1529
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1272 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1331
Query: 1530 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1589
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1332 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1390
Query: 1590 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1649
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1391 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1437
Query: 1650 PLINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1709
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1438 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1485
Query: 1710 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 1769
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1486 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1545
Query: 1770 IPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRP 1829
+ R N+ AD LA S R +DV V+ L P+ A + +
Sbjct: 1546 VLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQAAGAHDVAMVEAD 1601
Query: 1830 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1886
W + +FL S+E P QDK R++ R ++L LYK++ +L RCV E
Sbjct: 1602 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEE 1656
Query: 1887 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVP 1946
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1657 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1716
Query: 1947 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 2006
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1717 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1775
Query: 2007 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 2066
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1776 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1834
Query: 2067 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2121
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1835 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVE 1894
Query: 2122 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2181
SLR E + + R D L+ +EE R A+ R Y ++ ++ V R F
Sbjct: 1895 FESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFL 1951
Query: 2182 VGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2241
VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1952 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2009
Query: 2242 YFA 2244
++A
Sbjct: 2010 FYA 2012
Score = 53.5 bits (127), Expect = 8e-05
Identities = 52/211 (24%), Positives = 95/211 (44%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 415 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 471
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 472 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 530
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 531 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 584
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G + K T
Sbjct: 585 NE-----YAKAEDAVTASKQSGPSWKQNKGT 610
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 784 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 843
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 844 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 887
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 694 bits (1790), Expect = 0.0
Identities = 400/1085 (36%), Positives = 590/1085 (53%), Gaps = 58/1085 (5%)
Query: 1174 DIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1233
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1234 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1293
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1294 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1353
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1354 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1413
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1414 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1473
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276
Query: 1474 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1529
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1530 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1589
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1395
Query: 1590 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1649
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 1650 PLINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1709
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1710 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 1769
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1770 IPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY-- 1827
+ R N+ AD LA S V + + V+ L P+ D AG + V
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQVAGTHDVAMVE 1604
Query: 1828 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 1884
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV
Sbjct: 1605 ADWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSL 1659
Query: 1885 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIH 1944
E QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH
Sbjct: 1660 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1719
Query: 1945 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 2004
+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1720 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADN 1778
Query: 2005 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2064
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE A
Sbjct: 1779 APDFF-INIVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERA 1837
Query: 2065 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2119
N I R+ ++ W E LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1838 NGMILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1897
Query: 2120 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPRE 2179
VE SLR E + + R D L+ +EE R A+ + Y ++ ++ V R
Sbjct: 1898 VEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRA 1954
Query: 2180 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2239
F VG+LVL++ Q R K +P +EGP+++ G+ L DG + N N + +
Sbjct: 1955 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHL 2012
Query: 2240 KKYFA 2244
++++A
Sbjct: 2013 RRFYA 2017
Score = 57.0 bits (136), Expect = 7e-06
Identities = 54/211 (25%), Positives = 95/211 (44%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + + M +Y
Sbjct: 420 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANY 476
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P +F L ++ QK ES
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQFDLYNVVQKSGESL 535
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 536 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 589
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G KK+T
Sbjct: 590 NE-----YAKAEDAVTASKQSGPSWKPKKDT 615
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 693 bits (1788), Expect = 0.0
Identities = 400/1085 (36%), Positives = 589/1085 (53%), Gaps = 58/1085 (5%)
Query: 1174 DIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1233
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1234 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1293
V +P+W+AN V V KK G+ RMCVD+ DLNK PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1294 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1353
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1354 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1413
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1414 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1473
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPE 1276
Query: 1474 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1529
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIY 1336
Query: 1530 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1589
++S+ D +TRY ++K + ++L HY H +++ P+ I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF-PLGDILHNREANGR 1395
Query: 1590 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1649
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKVEH-------- 1442
Query: 1650 PLINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1709
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1710 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 1769
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1770 IPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY-- 1827
+ R N+ AD LA S V + + V+ L P+ D AG + V
Sbjct: 1551 VLRHNNKAADRLANFGSKREVAPSD----VFVEHLYAPT--VPHKDTTQVAGTHDVAMVE 1604
Query: 1828 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 1884
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV
Sbjct: 1605 ADWREPLIRFLTSQELP-----QDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSL 1659
Query: 1885 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIH 1944
E QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH
Sbjct: 1660 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1719
Query: 1945 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 2004
+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1720 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAFGGYTHLFVAIDKFSKWIEAKPVVTITADN 1778
Query: 2005 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2064
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE A
Sbjct: 1779 ARDFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1837
Query: 2065 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2119
N I R+ ++ W E LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1838 NGMILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1897
Query: 2120 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPRE 2179
VE SLR E + + R D L+ +EE R A+ + Y ++ ++ V R
Sbjct: 1898 VEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRA 1954
Query: 2180 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2239
F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +
Sbjct: 1955 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHL 2012
Query: 2240 KKYFA 2244
++++A
Sbjct: 2013 RRFYA 2017
Score = 53.1 bits (126), Expect = 1e-04
Identities = 52/211 (24%), Positives = 93/211 (43%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + + M +Y
Sbjct: 420 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANY 476
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 477 LPVALADSARSWLHGLPRGTIESWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 535
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 536 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 589
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G K T
Sbjct: 590 NE-----YAKAEDAVTASKQSGPSWKPNKGT 615
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 692 bits (1786), Expect = 0.0
Identities = 411/1133 (36%), Positives = 606/1133 (53%), Gaps = 66/1133 (5%)
Query: 1134 QEEIELVNIGTEENK-REIKIGATLEEGVKQKIIQLLREYP-------DIFAWSYEDMPG 1185
+E+I L E + KI + E K K I L P DIFAW DMPG
Sbjct: 929 REDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDPTKTANNKDIFAWKPSDMPG 988
Query: 1186 LDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIV 1245
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 989 IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1048
Query: 1246 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1305
V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 1049 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 1108
Query: 1306 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1365
D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YVDD++VK+
Sbjct: 1109 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1168
Query: 1366 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1425
++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M
Sbjct: 1169 QKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 1228
Query: 1426 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYL 1485
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K L
Sbjct: 1229 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLL 1288
Query: 1486 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1541
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1289 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1348
Query: 1542 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1601
Y ++K + ++L HY H+ +++ P+ I G+IA+W + L D
Sbjct: 1349 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1407
Query: 1602 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISK 1661
+ FK + +IK LAD +A + +C+E + +
Sbjct: 1408 LSFKPRISIKSQALADFVA----------------------EWTECQE---DTTVKKMEH 1442
Query: 1662 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1721
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1443 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1502
Query: 1722 KHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1781
K L + GDS LV+NQ+ EW + YR R+L F +EL H+ R +N+ AD L
Sbjct: 1503 KRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEAADRL 1562
Query: 1782 ATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY--RPWYYDIKQFLL 1839
A S V + + V+ L P+ D AG + V W + +FL
Sbjct: 1563 ANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQAAGIHDVAMVETDWREPLIRFLT 1616
Query: 1840 SREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHD 1896
S+E P QDK R++ R +++ LYK++ +L RCV E QL+ D+H
Sbjct: 1617 SQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHS 1671
Query: 1897 GTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSP 1956
G G HA T+ K R G++W T D + R C CQ +A +IH+P L +
Sbjct: 1672 GICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLS 1731
Query: 1957 WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICR 2016
WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R
Sbjct: 1732 WPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1789
Query: 2017 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRI 2071
+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1790 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1849
Query: 2072 VQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEA 2131
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1850 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---R 1906
Query: 2132 KLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRI 2191
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LVL++
Sbjct: 1907 NFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK-- 1964
Query: 2192 SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2244
Q R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1965 IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRRFYA 2017
Score = 53.5 bits (127), Expect = 8e-05
Identities = 52/211 (24%), Positives = 95/211 (44%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 420 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 476
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 535
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 536 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 589
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G + K T
Sbjct: 590 NE-----YAKAEDAVTASKQSGPSWKQNKGT 615
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 892
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 692 bits (1786), Expect = 0.0
Identities = 401/1085 (36%), Positives = 590/1085 (53%), Gaps = 58/1085 (5%)
Query: 1174 DIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1233
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 910 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 969
Query: 1234 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1293
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 970 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1029
Query: 1294 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1353
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1030 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1089
Query: 1354 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1413
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1090 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1149
Query: 1414 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1473
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1150 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1209
Query: 1474 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1529
Q+AF+ K L EPPIL P PL++Y++ + + VL +++E G K + IY
Sbjct: 1210 AQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1269
Query: 1530 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1589
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1270 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1328
Query: 1590 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1649
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1329 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1375
Query: 1650 PLINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1709
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1376 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1423
Query: 1710 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 1769
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1424 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1483
Query: 1770 IPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPS--HVFAIGDVIDQAGENVVDY 1827
+ R N+ AD LA S + + + V+ L P+ H D D +V+
Sbjct: 1484 VLRHNNEAADRLANFGSKREMAPSD----VFVEHLYTPTVPHKDTTQDA-DTHDVALVE- 1537
Query: 1828 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 1884
W +FL S+E P QDK R++ R + + LYK++ +L RCV
Sbjct: 1538 ADWREPFIRFLTSQELP-----QDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSL 1592
Query: 1885 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIH 1944
E QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH
Sbjct: 1593 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1652
Query: 1945 VPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 2004
+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1653 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADN 1711
Query: 2005 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 2064
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE A
Sbjct: 1712 ARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1770
Query: 2065 NKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2119
N I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1771 NGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1830
Query: 2120 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPRE 2179
VE SLR E + + R D L+ +EE R A+ R Y ++ ++ V R
Sbjct: 1831 VEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRA 1887
Query: 2180 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2239
F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +
Sbjct: 1888 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHL 1945
Query: 2240 KKYFA 2244
++++A
Sbjct: 1946 RRFYA 1950
Score = 53.5 bits (127), Expect = 8e-05
Identities = 52/211 (24%), Positives = 95/211 (44%), Gaps = 16/211 (7%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +Y
Sbjct: 353 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 409
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 272
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 410 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 468
Query: 273 REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 332
R+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 469 RDYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKA 522
Query: 333 VRDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G + K T
Sbjct: 523 NE-----YTKAEDAVTASKQSGPSWKQNKGT 548
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 722 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 781
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 782 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 825
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 691 bits (1782), Expect = 0.0
Identities = 407/1131 (35%), Positives = 603/1131 (52%), Gaps = 62/1131 (5%)
Query: 1134 QEEIEL-VNIGTEENKREIKIGATLEEGVKQKIIQL-------LREYPDIFAWSYEDMPG 1185
+E+I L V +E KI + E K K I L DIFAW DMPG
Sbjct: 668 REDIRLAVATASEGEVPATKISKSGESEAKTKKIPLDPSDSTKTANNKDIFAWKPSDMPG 727
Query: 1186 LDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIV 1245
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 728 IPREVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 787
Query: 1246 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1305
V KK G+ RMCVD+ DLNK PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 788 LVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 847
Query: 1306 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1365
D KTSFITP G +CY MPFGL NAGATYQR + F I + VE YVDD+++K+
Sbjct: 848 ESDCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTK 907
Query: 1366 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1425
++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M
Sbjct: 908 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 967
Query: 1426 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYL 1485
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K +L
Sbjct: 968 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFL 1027
Query: 1486 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1541
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1028 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1087
Query: 1542 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1601
Y ++K + ++L HY H+ +++ P+ I G+IA+W + L D
Sbjct: 1088 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1146
Query: 1602 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPISK 1661
I FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1147 ISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------------------- 1181
Query: 1662 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1721
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1182 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1241
Query: 1722 KHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1781
K L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R N+ AD L
Sbjct: 1242 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1301
Query: 1782 ATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRPWYYDIKQFLLSR 1841
A S V + + V+ L P+ I + + W +FL S+
Sbjct: 1302 ANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEADWREPFIRFLTSQ 1357
Query: 1842 EYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGT 1898
E P QDK R++ R +++ LYK++ +L RCV E QL+ D+H G
Sbjct: 1358 ELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGI 1412
Query: 1899 FGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWP 1958
G HA T+ K R G++W T D + R C CQ +A +IH+P L + WP
Sbjct: 1413 CGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWP 1472
Query: 1959 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 2018
F++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R+G
Sbjct: 1473 FAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFG 1530
Query: 2019 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQ 2073
VP++IITDNG V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1531 VPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFD 1590
Query: 2074 KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2133
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1591 RLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNF 1647
Query: 2134 SEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQ 2193
E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+LVL++ Q
Sbjct: 1648 REERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQ 1705
Query: 2194 QPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYFA 2244
R K +P +EGP+++ + G+ L DG + N N + +++++A
Sbjct: 1706 TTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFYA 1756
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 528 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 587
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 588 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 631
Score = 48.1 bits (113), Expect = 0.003
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 13/204 (6%)
Query: 161 QDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHYFQDSLME 220
QD + V FK +KY+G T P++ + Y + + M +Y +L +
Sbjct: 163 QDPIAGAGVTTSAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDSKAMANYLPVALAD 222
Query: 221 DAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRW 279
A W L + + ++ EL F +++ T +P ++ L ++ QK ES R+Y +R+
Sbjct: 223 SARSWLHGLPRGTIRSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRF 281
Query: 280 RGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIV 339
+I+ D + + F K ++ + + P T+ E+A
Sbjct: 282 SEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE----- 330
Query: 340 FEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G K T
Sbjct: 331 YAKAEDAVTASKQSGPSWKPNKGT 354
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 686 bits (1770), Expect = 0.0
Identities = 398/1092 (36%), Positives = 588/1092 (53%), Gaps = 68/1092 (6%)
Query: 1165 IIQLLREYPDIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 1224
+I L+ DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+
Sbjct: 973 LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELT 1032
Query: 1225 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1284
K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+T
Sbjct: 1033 KLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDST 1092
Query: 1285 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1344
A ++ SF+D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR +
Sbjct: 1093 AGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRC 1152
Query: 1345 FHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1404
F I + VE YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLG
Sbjct: 1153 FSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLG 1212
Query: 1405 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1464
F+VS +GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1213 FMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKK 1272
Query: 1465 NQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG- 1522
W E Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G
Sbjct: 1273 TDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGH 1332
Query: 1523 --KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI 1580
K + IY++S+ D +TRY ++K L H+ +++ P+ I
Sbjct: 1333 VQKVQRPIYFVSEVLADSKTRYPQVQK--------------LLYGHSVTVVTSF-PLGDI 1377
Query: 1581 FEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIM 1640
G+IA+W + L DI FK + +IK LAD +A ++ + D P E +
Sbjct: 1378 LHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENME 1432
Query: 1641 YLKSKDCEEPLINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECT 1700
+ W + FDG+ G G G V++SP G + + I F +
Sbjct: 1433 H--------------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1472
Query: 1701 NNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLT 1760
+N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L
Sbjct: 1473 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1532
Query: 1761 YFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQA 1820
F +EL H+ R N+ AD LA S V + + V+ L P+ +
Sbjct: 1533 KFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGT 1588
Query: 1821 GENVVDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMV 1877
+ V W + +FL S+E P QDK R++ R +++ LYK++ +
Sbjct: 1589 HDVAVVETDWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGI 1643
Query: 1878 LLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQ 1937
L RCV E QL+ D+H G G HA T+ K R G++W T D + R C CQ
Sbjct: 1644 LQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQ 1703
Query: 1938 IYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1997
+A +IH+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA
Sbjct: 1704 FFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPV 1762
Query: 1998 TNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQM 2057
+T F NI+ R+GVP++IITDNGT V + CE+F I+ +S P
Sbjct: 1763 VTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMS 1821
Query: 2058 NGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGM 2112
NG VE AN I R+ ++ W + LP L RTT +TG +PF LVYG
Sbjct: 1822 NGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGA 1881
Query: 2113 EAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFD 2172
EA+LP EVE SLR E + + R D L+ +EE R A+ R Y ++ +
Sbjct: 1882 EAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHN 1938
Query: 2173 KKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPN 2232
+ V R F VG+LVL++ Q R K +P +EGP+++ + G+ L DG + N
Sbjct: 1939 RNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDN 1996
Query: 2233 PVNADIVKKYFA 2244
N + +++++A
Sbjct: 1997 SWNIEHLRRFYA 2008
Score = 51.6 bits (122), Expect = 3e-04
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 13/197 (6%)
Query: 168 KVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHYFQDSLMEDAAEWYT 227
+VD P FK +KY+G T P + + Y + ++ M +Y +L + A W
Sbjct: 427 RVDWPAGFKPTGIEKYDGTTNPGSWLTVYGLAIRAAGGDNKAMANYLPVALADSARSWLH 486
Query: 228 SLSKDDVHTFDELATAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRWRGAAARI 286
L + + ++ EL F +++ T +P ++ L ++ QK ES R+Y +R+ +I
Sbjct: 487 GLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESLRDYIRRFSEQRNKI 545
Query: 287 TPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 346
+ D + + F K ++ + + P T+ E+A + KAE +
Sbjct: 546 SDITD-DVIIAAFTKGIRHEELVGKFGRKPPR-----TVKLMFEKANE-----YAKAEDA 594
Query: 347 VNASKRYGNGHHKKKET 363
V ASK+ G + K T
Sbjct: 595 VTASKQSGPSWKQNKGT 611
Score = 48.9 bits (115), Expect = 0.002
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 785 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 844
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 845 RENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMK 888
>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
Length = 2017
Score = 683 bits (1762), Expect = 0.0
Identities = 392/1083 (36%), Positives = 586/1083 (53%), Gaps = 54/1083 (4%)
Query: 1174 DIFAWSYEDMPGLDPMIVEHQIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 1233
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1234 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1293
V +P+W+AN V V KK G+ RMCVD+ DLN + PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1294 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1353
D + GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYLGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1354 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1413
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1414 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 1473
+P+K+ AI M P T+K V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1217 ANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPD 1276
Query: 1474 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1529
Q+AF+ K L EPP+L P PL++Y+A + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1530 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1589
++S+ D +TRY ++K + ++L HY +H+ +++ + I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSFS-LGDILHNREANGR 1395
Query: 1590 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1649
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 1650 PLINEGPDPISKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1709
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1710 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 1769
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1770 IPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDYRP 1829
+ R N+ AD LA S V + + V+ L P+ I + +
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEAD 1606
Query: 1830 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1886
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661
Query: 1887 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQYARKCHKCQIYADKIHVP 1946
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721
Query: 1947 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 2006
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780
Query: 2007 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 2066
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839
Query: 2067 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2121
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899
Query: 2122 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2181
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F
Sbjct: 1900 FESLRF---RNYREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956
Query: 2182 VGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2241
VG+LVL++ Q R K +P +EGP+++ G+ L DG + N N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014
Query: 2242 YFA 2244
++A
Sbjct: 2015 FYA 2017
Score = 50.8 bits (120), Expect = 5e-04
Identities = 50/210 (23%), Positives = 89/210 (41%), Gaps = 14/210 (6%)
Query: 154 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMGNYKDNDSLMIHY 213
+G + T DL +VD P FK +KY+G T P++ + Y + + M +Y
Sbjct: 420 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTIYGLAIRAAGGDSKAMANY 476
Query: 214 FQDSLMEDAAEWYTSLSKDDVHTFDELATAFKSHYGFNTRLKPNREFLRSLSQKKEESFR 273
+L + A W L + + ++ EL F +++ + L ++ QK ES R
Sbjct: 477 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFEHPGTQYDLYNVIQKSGESLR 536
Query: 274 EYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAV 333
+Y +R+ +I+ D + + F K ++ + + P T+ E+A
Sbjct: 537 DYIRRFSEQRNKISDITD-DVIIAAFTKGIRHEELVGKFGRKPPK-----TVKLMFEKAN 590
Query: 334 RDGIIVFEKAESSVNASKRYGNGHHKKKET 363
+ KAE +V ASK+ G K T
Sbjct: 591 E-----YAKAEDAVTASKQSGPSWKPNKGT 615
Score = 48.1 bits (113), Expect = 0.003
Identities = 34/104 (32%), Positives = 51/104 (48%), Gaps = 5/104 (4%)
Query: 839 ISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVKA-FDGSRKNVLGEIDLPITIGP 897
+ L+D GS+LN++ TLD + + L+ S G LG+I LP+T G
Sbjct: 789 LRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATPLGQITLPVTFGT 848
Query: 898 -ENFL---ITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 937
ENF I+F+V D +Y +LGRP + AV + +K
Sbjct: 849 RENFRTENISFEVDDFETAYHAILGRPALAKFMAVPHYTYMMMK 892
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,973,099,092
Number of Sequences: 2540612
Number of extensions: 181077579
Number of successful extensions: 807483
Number of sequences better than 10.0: 37242
Number of HSP's better than 10.0 without gapping: 5772
Number of HSP's successfully gapped in prelim test: 31605
Number of HSP's that attempted gapping in prelim test: 695263
Number of HSP's gapped (non-prelim): 69917
length of query: 2244
length of database: 863,360,394
effective HSP length: 144
effective length of query: 2100
effective length of database: 497,512,266
effective search space: 1044775758600
effective search space used: 1044775758600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 84 (37.0 bits)
Medicago: description of AC146556.9