BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.7 - phase: 0 /pseudo
(1014 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 509 e-142
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 373 e-101
gb|AAT39963.1| putative polyprotein [Solanum demissum] 265 4e-69
gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum... 251 1e-64
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 200 2e-49
ref|XP_462905.1| putative gag-pol precursor [Oryza sativa (japon... 189 5e-46
gb|AAV25049.1| putative polyprotein [Oryza sativa (japonica cult... 159 4e-37
gb|AAX95607.1| RNase H, putative [Oryza sativa (japonica cultiva... 155 6e-36
ref|XP_462939.1| putative gag-pol protein [Oryza sativa (japonic... 155 6e-36
gb|AAK53848.1| Putative retroelement [Oryza sativa] 155 6e-36
emb|CAE76081.1| B1340F09.19 [Oryza sativa (japonica cultivar-gro... 149 4e-34
gb|AAT73678.1| putative polyprotein [Oryza sativa (japonica cult... 149 6e-34
gb|AAP52743.1| putative gag-pol precursor [Oryza sativa (japonic... 148 8e-34
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 148 8e-34
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 148 8e-34
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 148 8e-34
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 148 1e-33
ref|XP_462713.1| OSJNBa0079F16.18 [Oryza sativa (japonica cultiv... 148 1e-33
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 148 1e-33
gb|AAR96234.1| putative polyprotein [Oryza sativa (japonica cult... 148 1e-33
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 509 bits (1312), Expect = e-142
Identities = 250/373 (67%), Positives = 304/373 (81%), Gaps = 6/373 (1%)
Query: 638 AWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKG 697
AWAA+ LR YM+NHTT L+SKMDP+KYIFEKPALTGR+ARWQM+L+EYDI Y +QKAIKG
Sbjct: 1577 AWAARRLRQYMLNHTTLLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKG 1636
Query: 698 SILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNV 757
SIL+++LA QPIEDYQP+ F+FPD++IMYLKMKDC EP+ EGPDP+ + L+FDGAVN+
Sbjct: 1637 SILSDYLAEQPIEDYQPMMFEFPDEDIMYLKMKDCKEPLVEEGPDPDDKWTLMFDGAVNM 1696
Query: 758 YGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLAL 817
G+G+GAVLI PKG H+PF+AR+ FD TNN EYEACIMGIEEAIDLRIK + I+GD AL
Sbjct: 1697 NGNGVGAVLINPKGAHMPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKTLDIFGDSAL 1756
Query: 818 VINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNG 877
V+NQ+ G+W T P LIPYRDY RR+LTFF KV+L+HVPRDENQMADALATLSSMI VN
Sbjct: 1757 VVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVKLYHVPRDENQMADALATLSSMIKVNW 1816
Query: 878 HNTVLVINVQFLDRPAYVFAAEA-VDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLS 936
N V + V L+RPAYVFAAE+ V D+KPWY+DI+ F++TQ+YP GAS DKKTLR+L+
Sbjct: 1817 WNHVPHVAVNRLERPAYVFAAESVVIDEKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLA 1876
Query: 937 SRFFLN-EDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEES 995
F+LN +DVLYKRNFD VLLRC+++ EA LM E+HEGSFGTH+ GHA + LR
Sbjct: 1877 GSFYLNQDDVLYKRNFDMVLLRCMDRPEADMLMQEVHEGSFGTHAGGHAMAKKLLRA--G 1934
Query: 996 FLWWCFNS--YKY 1006
+ W S +KY
Sbjct: 1935 YYWMTMESDCFKY 1947
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 373 bits (957), Expect = e-101
Identities = 174/236 (73%), Positives = 206/236 (86%)
Query: 638 AWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKG 697
AWAA+ LR YM+NHTT L+SKMDP+KYIFEKPALTGR+ARWQM+L+EYDI Y +QKAIKG
Sbjct: 1579 AWAARRLRQYMLNHTTLLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKG 1638
Query: 698 SILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNV 757
SIL+++LA QPIEDYQP+ F+FPD++IMYLK+KDC+EP+ EGPDP+ + L+FDGAVN+
Sbjct: 1639 SILSDYLAEQPIEDYQPMMFEFPDEDIMYLKVKDCEEPLVEEGPDPDDKWTLMFDGAVNM 1698
Query: 758 YGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLAL 817
G+G+GAVLI PKG HIPF+AR+ FD TNN EYEACIMGIEEAIDLRIK + IYGD AL
Sbjct: 1699 NGNGVGAVLINPKGAHIPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKTLDIYGDSAL 1758
Query: 818 VINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMI 873
V+NQ+ G+W T P LIPYRDY RR+LTFF KV L+HVPRDENQMADALATLSSMI
Sbjct: 1759 VVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVRLYHVPRDENQMADALATLSSMI 1814
>gb|AAT39963.1| putative polyprotein [Solanum demissum]
Length = 1483
Score = 265 bits (678), Expect = 4e-69
Identities = 142/354 (40%), Positives = 211/354 (59%), Gaps = 41/354 (11%)
Query: 639 WAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGS 698
W A+ L+HY+ ++TT+L+S+MDP+KYIF+KP TGR+A+WQ+LL+E+DI+Y T+ A+K
Sbjct: 910 WVAQKLKHYLSSYTTYLISRMDPLKYIFQKPMPTGRLAKWQILLTEFDIIYVTRTAMKAQ 969
Query: 699 ILANHLAHQPIED-YQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNV 757
LA+HLA PI+D Y+P+K FPD+E+ + DE + + + L FDGA N
Sbjct: 970 ALADHLAENPIDDEYEPLKTYFPDEEVSCI-----DEVIHNKDQGWK----LFFDGAANK 1020
Query: 758 YGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLAL 817
G YEACI+G+ A D+ I+K+++ GD L
Sbjct: 1021 KG-------------------------------YEACILGLRLAADMGIQKLLVLGDSDL 1049
Query: 818 VINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNG 877
+++QI+GEWETR P LIPY+ + L F ++ H+PR N++ DALATLSSM+
Sbjct: 1050 LVHQIQGEWETRDPKLIPYQHCLQDLCQQFVSIKFRHIPRVHNEIVDALATLSSMLQHPD 1109
Query: 878 HNTVLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ + +Q D+ AY E D KPW+HDI+ ++Q+ + P A++ K+T+R+L S
Sbjct: 1110 EAHIDPLYIQIRDQNAYCNLVEEEFDGKPWFHDIKTYLQSGECPTNATSNQKRTIRRLDS 1169
Query: 938 RFFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLR 991
FFL+ +LYK+ D LLRCVN EA +M E+H G G H G+ + LR
Sbjct: 1170 GFFLSGGILYKKTPDLGLLRCVNAKEASTIMIEVHSGICGPHMNGYVLAKKILR 1223
>gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 251 bits (640), Expect = 1e-64
Identities = 140/356 (39%), Positives = 204/356 (56%), Gaps = 50/356 (14%)
Query: 639 WAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGS 698
W A+ L+HY+ ++TT+L+S+MDP+KYIF+KP TGR+A+WQ+L +E+DI+Y T+ A+K
Sbjct: 184 WVAQKLKHYLSSYTTYLISRMDPLKYIFQKPMPTGRLAKWQILRTEFDIIYVTRTAMKAQ 243
Query: 699 ILANHLAHQPIED-YQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNV 757
LA+HLA PI+D Y+P+K FPD+E+ + DE + + + L FDGA N
Sbjct: 244 ALADHLAENPIDDEYEPLKTYFPDEEVSCI-----DEVIHSKDQGWK----LFFDGAANK 294
Query: 758 YGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLAL 817
G GIGAVL++ G + P TA+++F CTNN+ EYEACI+G+ A D+ I+++++ GD L
Sbjct: 295 KGVGIGAVLMSESGEYFPITAQLRFYCTNNMSEYEACILGLRLAADMGIQELLVLGDSDL 354
Query: 818 VINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNG 877
+++QI+GEWETR P LIPY+ + L F ++ H+ R N++ADALATLSSM+
Sbjct: 355 LVHQIQGEWETRDPKLIPYQHCLQDLCRRFVSIKFRHISRVHNEIADALATLSSMLQHPD 414
Query: 878 HNTVLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ + +Q D+ AY E D
Sbjct: 415 EAHIDPLYIQIRDQHAYCNVVEEEFD---------------------------------- 440
Query: 938 RFFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGE 993
+LYK+ D LLRCVN EA +M E+H G G H G + LR E
Sbjct: 441 ------GILYKKTPDLGLLRCVNAKEASTIMIEVHSGVCGPHMNGFVLAKKILRAE 490
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 200 bits (508), Expect = 2e-49
Identities = 133/379 (35%), Positives = 204/379 (53%), Gaps = 42/379 (11%)
Query: 635 LRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKA 694
L +A K LRHYM+ H L+++ DPI+Y+ +P LTGR+ +W +L+ EYDI + QKA
Sbjct: 2184 LALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTGRLGKWALLMMEYDITFVPQKA 2243
Query: 695 IKGSILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGA 754
IKG LA LA P+ D P+ + PD+EI ++++ E L FDGA
Sbjct: 2244 IKGQALAEFLATHPMPDDSPLIANLPDEEIFTAELQEQWE--------------LYFDGA 2289
Query: 755 ----VNVYG-----SGIGAVLITPKGTHIPFT-ARIQFDCTNNIVEYEACIMGIEEAIDL 804
+N G +G G V TP+G I + + ++ +C+NN EYEA I G+ A+ +
Sbjct: 2290 SRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEECSNNEAEYEALIFGLLLALSM 2349
Query: 805 RIKKIVIYGDLALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMAD 864
++ + +GD L+I QI +E R P L+PY ARRL+ F +E+ HVPR +N AD
Sbjct: 2350 EVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRLMDKFEHIEVIHVPRSKNAPAD 2409
Query: 865 ALATLSSMINVNGHNTV-LVINVQFLDRPAYVFAAEAVD-------DDKPWYHDIQVFVQ 916
ALA L++ + G N +V+ ++L E V+ +++ W Q F+
Sbjct: 2410 ALAKLAAALVFQGDNPAQIVVEERWLLPAVLELIPEEVNIIITNSAEEEDWR---QPFLD 2466
Query: 917 TQKYPPGASNKDKKTLRKLSSR---FFLNEDVLYKRNF-DGVLLRCVNKHEAGKLMHEIH 972
K+ G+ +D R+L R + VLYKR++ VLLRCV++ EA +++ E+H
Sbjct: 2467 YFKH--GSLPEDPVERRQLQRRLPSYIYKAGVLYKRSYGQEVLLRCVDRSEANRVLQEVH 2524
Query: 973 EGSFGTHSCGHAKL*RSLR 991
G G H G K+ S+R
Sbjct: 2525 HGVCGGHQSG-PKMYHSIR 2542
>ref|XP_462905.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|15217332|gb|AAK92670.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1262
Score = 189 bits (479), Expect = 5e-46
Identities = 123/372 (33%), Positives = 197/372 (52%), Gaps = 26/372 (6%)
Query: 635 LRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKA 694
L +A K LRHYM+ H L++ +DPI+Y+ +P L GR+ +W +L+ E+DI Y QKA
Sbjct: 638 LALIFALKKLRHYMLTHQIQLIATVDPIRYVLSQPLLAGRLGKWALLMMEFDITYVPQKA 697
Query: 695 IKGSILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGA 754
+KG LA LA P+ D P+ + PD+++ ++ + E F E++ DG
Sbjct: 698 VKGQALAEFLAAHPVPDDSPLITELPDEDVFTIETEPSWELCFDGASRTEND----RDGT 753
Query: 755 VNVYGSGIGAVLITPKGTHIPFT-ARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYG 813
+G G V TP+G I + + ++ +C+NN EYEA I G+ A+ + ++ I +YG
Sbjct: 754 PR-KRAGAGLVFKTPQGGVIYHSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSIRVYG 812
Query: 814 DLALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATL-SSM 872
D L++ QI +E L+PY ARRL+ F +E+ HVPR N ADALA L +++
Sbjct: 813 DSQLIVQQINDIYEVLKQELVPYYSAARRLMEMFGHIEVMHVPRSRNAPADALAKLAAAL 872
Query: 873 INVNGHNTVLVINVQFLDRPAY------------VFAAEAVDDDKPWYHDIQVFVQTQKY 920
+ G T + + ++L PA V AA A +DD W + +
Sbjct: 873 VLPQGGPTQVNVEERWL-LPAVLELLPNEYEVDTVMAAAAKEDD--WRVPFLNYFRHGSL 929
Query: 921 PPGASNKDKKTLRKLSSRFFLNEDVLYKRNF-DGVLLRCVNKHEAGKLMHEIHEGSFGTH 979
P ++ +++ L++ + V Y+R++ VLLRCV++ EA K + E+H G G H
Sbjct: 930 PD--NSVERRQLQRRLPSYVYKSGVSYRRSYGQEVLLRCVDRLEADKALQEVHHGVCGGH 987
Query: 980 SCGHAKL*RSLR 991
G K+ S+R
Sbjct: 988 QSG-PKMYHSIR 998
>gb|AAV25049.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1869
Score = 159 bits (402), Expect = 4e-37
Identities = 104/362 (28%), Positives = 180/362 (48%), Gaps = 39/362 (10%)
Query: 640 AAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSI 699
A++ LRHY H +++ P+ I TGR+ +W + LSE+D+ + + AIK
Sbjct: 1221 ASRKLRHYFQAHRVTVVTSY-PLGQILHNREGTGRVVKWAIELSEFDLHFEPRHAIKSQA 1279
Query: 700 LANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPD--PESE*GLI-FDGAVN 756
LA+ +A P E++ + P GP P + ++ FDG+++
Sbjct: 1280 LADFVAEWT-----------PAPELVSV-------PEASSGPSQLPHTAHWVMQFDGSLS 1321
Query: 757 VYGSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLA 816
+ G+G G L +P G + + R+ F TNN+ EYE + G+ A L I+++++ GD
Sbjct: 1322 LQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQ 1381
Query: 817 LVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVN 876
LV+NQ+ E+ P + Y RR+ F+ +EL HVPR +N MAD L+ L+S +
Sbjct: 1382 LVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMMADELSRLAS----S 1437
Query: 877 GHNTVLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLS 936
T + L +P+ + A W +IQ ++ + P ++ + ++S
Sbjct: 1438 RAQTPPGAFEERLAQPSALIA---------WIAEIQAYLTDKTLPEDREGSER--VHRIS 1486
Query: 937 SRFFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEESF 996
R+ L E LY+R +G+LL+C+ + + L+ +IHEG G HS + ++ R + F
Sbjct: 1487 KRYVLVEGTLYRRAANGILLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFR--QGF 1544
Query: 997 LW 998
W
Sbjct: 1545 YW 1546
>gb|AAX95607.1| RNase H, putative [Oryza sativa (japonica cultivar-group)]
Length = 2282
Score = 155 bits (392), Expect = 6e-36
Identities = 112/371 (30%), Positives = 177/371 (47%), Gaps = 53/371 (14%)
Query: 639 WAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGS 698
++ L HY++++ ++ K D IKY+ P L GR+ +W L+E+D+ Y + KAIKG
Sbjct: 1745 FSCTRLSHYLLSNECTVICKADVIKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAIKGQ 1804
Query: 699 ILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVY 758
+A+ + ++ CD+ + P + FDG+V +
Sbjct: 1805 AIADFI------------------------VEHCDDSIGSVEVVPWTS---FFDGSVCTH 1837
Query: 759 GSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALV 818
GIG V+I+P+G F I+ TNN EYEA + G++ ++ I I GD LV
Sbjct: 1838 DCGIGLVIISPRGACFKFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSLLV 1897
Query: 819 INQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGH 878
I+Q+ GE+E + L+ Y + + L+ F V L HV R++N A+ LA +G+
Sbjct: 1898 ISQLAGEYECKSDTLMVYNEKCQELMQEFRLVTLKHVSREQNIEANDLAQ-----GASGY 1952
Query: 879 NTVLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSSR 938
++ D A + A A D W +D+ +Y S + LR + +
Sbjct: 1953 KPMI------KDVKAEIAAITAGD----WRYDV------HQYLHNPSQSASRKLRYKALK 1996
Query: 939 FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEESF-- 996
+ L +D LY R DGVLL+C++ +A + E+HEG GTH H K+ LR F
Sbjct: 1997 YTLLDDELYYRTIDGVLLKCLSADQAKVAIGEVHEGICGTHQSAH-KMKWLLRRARYFWP 2055
Query: 997 --LWWCFNSYK 1005
L CF YK
Sbjct: 2056 TMLEDCFKYYK 2066
>ref|XP_462939.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 2273
Score = 155 bits (392), Expect = 6e-36
Identities = 112/371 (30%), Positives = 177/371 (47%), Gaps = 53/371 (14%)
Query: 639 WAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGS 698
++ L HY++++ ++ K D IKY+ P L GR+ +W L+E+D+ Y + KAIKG
Sbjct: 1736 FSCTRLSHYLLSNECTVICKADVIKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAIKGQ 1795
Query: 699 ILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVY 758
+A+ + ++ CD+ + P + FDG+V +
Sbjct: 1796 AIADFI------------------------VEHCDDSIGSVEVVPWTS---FFDGSVCTH 1828
Query: 759 GSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALV 818
GIG V+I+P+G F I+ TNN EYEA + G++ ++ I I GD LV
Sbjct: 1829 DCGIGLVIISPRGACFKFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSLLV 1888
Query: 819 INQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGH 878
I+Q+ GE+E + L+ Y + + L+ F V L HV R++N A+ LA +G+
Sbjct: 1889 ISQLAGEYECKSDTLMVYNEKCQELMQEFRLVTLKHVSREQNIEANDLAQ-----GASGY 1943
Query: 879 NTVLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSSR 938
++ D A + A A D W +D+ +Y S + LR + +
Sbjct: 1944 KPMI------KDVKAEIAAITAGD----WRYDV------HQYLHNPSQSASRKLRYKALK 1987
Query: 939 FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEESF-- 996
+ L +D LY R DGVLL+C++ +A + E+HEG GTH H K+ LR F
Sbjct: 1988 YTLLDDELYYRTIDGVLLKCLSADQAKVAIGEVHEGICGTHQSAH-KMKWLLRRARYFWP 2046
Query: 997 --LWWCFNSYK 1005
L CF YK
Sbjct: 2047 TMLEDCFKYYK 2057
>gb|AAK53848.1| Putative retroelement [Oryza sativa]
Length = 2014
Score = 155 bits (392), Expect = 6e-36
Identities = 112/371 (30%), Positives = 177/371 (47%), Gaps = 53/371 (14%)
Query: 639 WAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGS 698
++ L HY++++ ++ K D IKY+ P L GR+ +W L+E+D+ Y + KAIKG
Sbjct: 1477 FSCTRLSHYLLSNECTVICKADVIKYMLSAPILKGRVGKWIFSLTEFDLRYESPKAIKGQ 1536
Query: 699 ILANHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVY 758
+A+ + ++ CD+ + P + FDG+V +
Sbjct: 1537 AIADFI------------------------VEHCDDSIGSVEVVPWTS---FFDGSVCTH 1569
Query: 759 GSGIGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALV 818
GIG V+I+P+G F I+ TNN EYEA + G++ ++ I I GD LV
Sbjct: 1570 DCGIGLVIISPRGACFKFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSLLV 1629
Query: 819 INQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGH 878
I+Q+ GE+E + L+ Y + + L+ F V L HV R++N A+ LA +G+
Sbjct: 1630 ISQLAGEYECKSDTLMVYNEKCQELMQEFRLVTLKHVSREQNIEANDLAQ-----GASGY 1684
Query: 879 NTVLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSSR 938
++ D A + A A D W +D+ +Y S + LR + +
Sbjct: 1685 KPMI------KDVKAEIAAITAGD----WRYDV------HQYLHNPSQSASRKLRYKALK 1728
Query: 939 FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEESF-- 996
+ L +D LY R DGVLL+C++ +A + E+HEG GTH H K+ LR F
Sbjct: 1729 YTLLDDELYYRTIDGVLLKCLSADQAKVAIGEVHEGICGTHQSAH-KMKWLLRRARYFWP 1787
Query: 997 --LWWCFNSYK 1005
L CF YK
Sbjct: 1788 TMLEDCFKYYK 1798
>emb|CAE76081.1| B1340F09.19 [Oryza sativa (japonica cultivar-group)]
gi|50921559|ref|XP_471140.1| B1340F09.19 [Oryza sativa
(japonica cultivar-group)] gi|38346515|emb|CAE03810.2|
OSJNBa0027H09.10 [Oryza sativa (japonica cultivar-group)]
Length = 1570
Score = 149 bits (377), Expect = 4e-34
Identities = 102/361 (28%), Positives = 171/361 (47%), Gaps = 46/361 (12%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
K L HY H+ +++ P+ I GRIA+W + L DI ++ Q +IK LA
Sbjct: 1241 KKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPQTSIKSQALA 1299
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A + +C E + GE + + + FDG+ + G+G
Sbjct: 1300 DFVA----------------------EWTECQEDIPGEKMEHWT---MHFDGSKRLSGTG 1334
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ A+ L IK++++ GD LV+NQ
Sbjct: 1335 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAVSLGIKRLIVRGDSQLVVNQ 1394
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNTV 881
+ EW + YR R+L F+ +EL H+ R N+ AD LA S V +
Sbjct: 1395 VMKEWSCLDDNMTAYRQEVRKLEDKFDGLELSHILRHNNEAADRLANFGSKREVAPSD-- 1452
Query: 882 LVINVQFLDRPAY-----VFAAEAVD---DDKPWYHDIQVFVQTQKYPPGASNKDKKTLR 933
+ V+ L P A+ D + W + F+ +Q++P +DK
Sbjct: 1453 --VFVEHLYEPTVPQKETTQVADTQDIAMIEADWREPLIRFLTSQEFP-----QDKDEAE 1505
Query: 934 KLSSR---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSL 990
++S R + ++E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++
Sbjct: 1506 RISRRSRLYVIHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAY 1565
Query: 991 R 991
R
Sbjct: 1566 R 1566
>gb|AAT73678.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1992
Score = 149 bits (375), Expect = 6e-34
Identities = 101/364 (27%), Positives = 168/364 (45%), Gaps = 40/364 (10%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ I GRIA+W + L DI ++ + +IK LA
Sbjct: 1339 RKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALA 1397
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A + +C E E + + + FDG+ + G+G
Sbjct: 1398 DFVA----------------------EWTECQEDTHAEKMEHWT---MHFDGSKRLSGTG 1432
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1433 AGVVLISPAGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1492
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNT- 880
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S V +
Sbjct: 1493 VMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSDVF 1552
Query: 881 ---VLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ V D + + W + F+ +Q+ P +DK ++S
Sbjct: 1553 VEHLYTPTVPHKDTTQVAGTHDVAMIEADWREPLIRFLTSQELP-----QDKDEAERISR 1607
Query: 938 R---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEE 994
R + ++E LYKR+ G+L RCV+ E +L+ +IH G G H+ + ++ R +
Sbjct: 1608 RSKLYVMHEAELYKRSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYR--Q 1665
Query: 995 SFLW 998
F W
Sbjct: 1666 GFFW 1669
>gb|AAP52743.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37532308|ref|NP_920456.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|20270061|gb|AAM18149.1| Putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|18958679|gb|AAL82662.1| retrotransposon protein,
putative, Ty3-gypsy sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1964
Score = 148 bits (374), Expect = 8e-34
Identities = 103/368 (27%), Positives = 170/368 (45%), Gaps = 48/368 (13%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ + GRIA+W + L DI ++ + +IK LA
Sbjct: 1311 RKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALA 1369
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A ++ + D P ++I + M FDG+ + G+G
Sbjct: 1370 DFVA-----EWTECQEDTPVEKIEHWTMH--------------------FDGSKRLSGTG 1404
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1405 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1464
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNTV 881
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S +
Sbjct: 1465 VMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKRETAPSD-- 1522
Query: 882 LVINVQFLDRPAYVFAAEAVDDD--------KPWYHDIQVFVQTQKYPPGASNKDKKTLR 933
+ V+ L P D D W F+ +Q+ P +DK
Sbjct: 1523 --VFVEHLYTPTVPHKDTTQDADTRDIAMVEADWREPFIRFLTSQELP-----QDKDEAE 1575
Query: 934 KLSSR---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSL 990
++S R + L+E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++
Sbjct: 1576 RISRRSKLYVLHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAY 1635
Query: 991 RGEESFLW 998
R + F W
Sbjct: 1636 R--QGFFW 1641
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 148 bits (374), Expect = 8e-34
Identities = 103/368 (27%), Positives = 170/368 (45%), Gaps = 48/368 (13%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ + GRIA+W + L DI ++ + +IK LA
Sbjct: 1333 RKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALA 1391
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A ++ + D P ++I + M FDG+ + G+G
Sbjct: 1392 DFVA-----EWTECQEDTPVEKIEHWTMH--------------------FDGSKRLSGTG 1426
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1427 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1486
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNTV 881
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S +
Sbjct: 1487 VMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKRETAPSD-- 1544
Query: 882 LVINVQFLDRPAYVFAAEAVDDD--------KPWYHDIQVFVQTQKYPPGASNKDKKTLR 933
+ V+ L P D D W F+ +Q+ P +DK
Sbjct: 1545 --VFVEHLYTPTVPHKDTTQDADTRNIAMVEADWREPFIRFLTSQELP-----QDKDEAE 1597
Query: 934 KLSSR---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSL 990
++S R + L+E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++
Sbjct: 1598 RISRRSKLYVLHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAY 1657
Query: 991 RGEESFLW 998
R + F W
Sbjct: 1658 R--QGFFW 1663
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 148 bits (374), Expect = 8e-34
Identities = 100/364 (27%), Positives = 169/364 (45%), Gaps = 40/364 (10%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ + GRIA+W + L DI ++ + +IK LA
Sbjct: 1333 RKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALA 1391
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A ++ + D P ++I + M FDG+ + G+G
Sbjct: 1392 DFVA-----EWTECQEDTPVEKIEHWTMH--------------------FDGSKRLSGTG 1426
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1427 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1486
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNT- 880
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S +
Sbjct: 1487 VMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREAAPSDVF 1546
Query: 881 ---VLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ V D + V + W F+ +Q+ P +DK ++S
Sbjct: 1547 VEHLYTPTVPHKDTTQDADTHDVVMVEADWREPFIRFLSSQELP-----QDKDEAERISR 1601
Query: 938 R---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEE 994
R + ++E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++ R +
Sbjct: 1602 RSKLYVMHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYR--Q 1659
Query: 995 SFLW 998
F W
Sbjct: 1660 GFFW 1663
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 148 bits (374), Expect = 8e-34
Identities = 101/364 (27%), Positives = 170/364 (45%), Gaps = 40/364 (10%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ I + GRIA+W + L DI ++ + +IK LA
Sbjct: 1360 RKLSHYFQGHSVTVVTSF-PLGDILHNREVNGRIAKWALELMSLDISFKPRISIKSQALA 1418
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A ++ + D P + + + M FDG+ + G+G
Sbjct: 1419 DFVA-----EWTECQEDTPAENMEHWTMH--------------------FDGSKRLSGTG 1453
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1454 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1513
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNT- 880
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S +
Sbjct: 1514 VMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREAAPSDVF 1573
Query: 881 ---VLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ V D +A + W + F+ +Q+ P +DK ++S
Sbjct: 1574 VEHLYTPTVPHKDTTQVAGTHDAAMVEVDWREPLIRFLTSQELP-----QDKDEAERISR 1628
Query: 938 R---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEE 994
R + L+E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++ R +
Sbjct: 1629 RSKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYR--Q 1686
Query: 995 SFLW 998
F W
Sbjct: 1687 GFFW 1690
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 148 bits (373), Expect = 1e-33
Identities = 100/364 (27%), Positives = 169/364 (45%), Gaps = 40/364 (10%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ I GRIA+W + L DI ++ + +IK LA
Sbjct: 1357 RKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALA 1415
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A ++ + D P + + + M FDG+ + G+G
Sbjct: 1416 DFVA-----EWTECQEDTPAENMEHWTMH--------------------FDGSKRLSGTG 1450
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1451 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1510
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNT- 880
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S V +
Sbjct: 1511 VMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSDVF 1570
Query: 881 ---VLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ V D + + W + F+ +Q+ P +DK ++S
Sbjct: 1571 VEHLYTPTVPHKDTTQVAGTHDVAMVETDWREPLIRFLTSQELP-----QDKDEAERISR 1625
Query: 938 R---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEE 994
R + ++E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++ R +
Sbjct: 1626 RSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLQDIHSGICGNHAAARTIVGKAYR--Q 1683
Query: 995 SFLW 998
F W
Sbjct: 1684 GFFW 1687
>ref|XP_462713.1| OSJNBa0079F16.18 [Oryza sativa (japonica cultivar-group)]
gi|39546270|emb|CAD39817.3| OSJNBa0079F16.18 [Oryza
sativa (japonica cultivar-group)]
gi|32487832|emb|CAE05063.1| OSJNBa0094P09.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1802
Score = 148 bits (373), Expect = 1e-33
Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 40/364 (10%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ I GRIA+W + L DI ++ + +IK LA
Sbjct: 1364 RKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALA 1422
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A ++ + D P +++ + M FDG+ + G+G
Sbjct: 1423 DFVA-----EWTECQEDTPAEKMEHWTMH--------------------FDGSKRLSGTG 1457
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1458 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1517
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNT- 880
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S V +
Sbjct: 1518 VMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSDVF 1577
Query: 881 ---VLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ V D + + W + F+ +Q+ P +DK ++S
Sbjct: 1578 VEHLYTPTVPHKDTTQVAGTHDVAMVEADWREPLIRFLTSQELP-----QDKDEAERISR 1632
Query: 938 R---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEE 994
R + ++E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++ R +
Sbjct: 1633 RSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYR--Q 1690
Query: 995 SFLW 998
F W
Sbjct: 1691 GFFW 1694
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 148 bits (373), Expect = 1e-33
Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 40/364 (10%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ I GRIA+W + L DI ++ + +IK LA
Sbjct: 1364 RKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALA 1422
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A ++ + D P +++ + M FDG+ + G+G
Sbjct: 1423 DFVA-----EWTECQEDTPAEKMEHWTMH--------------------FDGSKRLSGTG 1457
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1458 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1517
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNT- 880
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S V +
Sbjct: 1518 VMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSDVF 1577
Query: 881 ---VLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ V D + + W + F+ +Q+ P +DK ++S
Sbjct: 1578 VEHLYTPTVPHKDTTQVAGTHDVAMVEADWREPLIRFLTSQELP-----QDKDEAERISR 1632
Query: 938 R---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEE 994
R + ++E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++ R +
Sbjct: 1633 RSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYR--Q 1690
Query: 995 SFLW 998
F W
Sbjct: 1691 GFFW 1694
>gb|AAR96234.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2004
Score = 148 bits (373), Expect = 1e-33
Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 40/364 (10%)
Query: 642 KHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSILA 701
+ L HY H+ +++ P+ I GRIA+W + L DI ++ + +IK LA
Sbjct: 1342 RKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALA 1400
Query: 702 NHLAHQPIEDYQPIKFDFPDKEIMYLKMKDCDEPVFGEGPDPESE*GLIFDGAVNVYGSG 761
+ +A ++ + D P +++ + M FDG+ + G+G
Sbjct: 1401 DFVA-----EWTECQEDTPAEKMEHWTMH--------------------FDGSKRLSGTG 1435
Query: 762 IGAVLITPKGTHIPFTARIQFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALVINQ 821
G VLI+P G + + I F ++N+ EYEA + G+ AI L IK++++ GD LV+NQ
Sbjct: 1436 AGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ 1495
Query: 822 IKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNT- 880
+ EW ++ YR R+L F+ +EL HV R N+ AD LA S V +
Sbjct: 1496 VMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSDVF 1555
Query: 881 ---VLVINVQFLDRPAYVFAAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRKLSS 937
+ V D + + W + F+ +Q+ P +DK ++S
Sbjct: 1556 VEHLYTPTVPHKDTTQVAGTHDVAMVEADWREPLIRFLTSQELP-----QDKDEAERISR 1610
Query: 938 R---FFLNEDVLYKRNFDGVLLRCVNKHEAGKLMHEIHEGSFGTHSCGHAKL*RSLRGEE 994
R + ++E LYK++ G+L RCV+ E +L+ +IH G G H+ + ++ R +
Sbjct: 1611 RSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYR--Q 1668
Query: 995 SFLW 998
F W
Sbjct: 1669 GFFW 1672
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.352 0.157 0.561
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,555,388,724
Number of Sequences: 2540612
Number of extensions: 59886455
Number of successful extensions: 192617
Number of sequences better than 10.0: 955
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 190505
Number of HSP's gapped (non-prelim): 1801
length of query: 1014
length of database: 863,360,394
effective HSP length: 138
effective length of query: 876
effective length of database: 512,755,938
effective search space: 449174201688
effective search space used: 449174201688
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 80 (35.4 bits)
Medicago: description of AC146554.7