BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.10 + phase: 2 /partial
(83 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 51 7e-06
dbj|BAD46729.1| phosphoribosyl pyrophosphate synthase-like [Oryz... 47 9e-05
gb|AAP53704.1| contains similarity to non-LTR reverse transcript... 46 2e-04
ref|XP_470208.1| Putative retroelement [Oryza sativa (japonica c... 45 4e-04
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 45 4e-04
ref|XP_475401.1| putative polyprotein [Oryza sativa (japonica cu... 45 5e-04
gb|AAX96297.1| retrotransposon protein, putative, unclassified [... 44 8e-04
gb|AAT38805.1| hypothetical protein PGEC747E24.5 [Solanum demissum] 44 0.001
dbj|BAD52658.1| HcrVf2 protein-like [Oryza sativa (japonica cult... 44 0.001
gb|AAX95598.1| hypothetical protein [Oryza sativa (japonica cult... 44 0.001
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 43 0.002
ref|NP_189068.1| expressed protein [Arabidopsis thaliana] 43 0.002
gb|AAD27672.1| putative reverse transcriptase [Oryza sativa] 41 0.007
pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana gi... 40 0.012
ref|NP_915116.1| B1078G07.7 [Oryza sativa (japonica cultivar-gro... 40 0.015
gb|AAT93947.1| unknown protein [Oryza sativa (japonica cultivar-... 40 0.015
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 40 0.020
ref|XP_471624.1| OSJNBa0029L02.10 [Oryza sativa (japonica cultiv... 40 0.020
emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa (japonica cultivar... 40 0.020
dbj|BAD72443.1| cyst nematode resistance protein-like [Oryza sat... 40 0.020
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 51.2 bits (121), Expect = 7e-06
Identities = 26/60 (43%), Positives = 33/60 (54%), Gaps = 2/60 (3%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCPI 80
IW VPLK+ I W +N++ TK NL+ RG D + C VET QHLF CP+
Sbjct: 844 IWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWRKGDNK--CQFCDKVETVQHLFFDCPL 901
>dbj|BAD46729.1| phosphoribosyl pyrophosphate synthase-like [Oryza sativa
(japonica cultivar-group)]
Length = 183
Score = 47.4 bits (111), Expect = 9e-05
Identities = 25/62 (40%), Positives = 33/62 (52%), Gaps = 4/62 (6%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTL-APDAQLCVSGCWAVETAQHLFVS 77
+ +W P+KV AW L ++R P K NL + + AP +LC S A ETA HL
Sbjct: 8 KFVWENKAPMKVQFFAWLLTKDRFPIKRNLHKKTIVPAPTCELCNS---ADETALHLCFQ 64
Query: 78 CP 79
CP
Sbjct: 65 CP 66
>gb|AAP53704.1| contains similarity to non-LTR reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534230|ref|NP_921417.1|
contains similarity to non-LTR reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 379
Score = 46.2 bits (108), Expect = 2e-04
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
+ IW PLKV AW L+++RL TK NL + T+ P+ +C A ETA HL C
Sbjct: 264 DAIWKCKAPLKVKFFAWLLVKDRLSTKKNL-HKKTIVPN-DICDICNGATETASHLCFFC 321
Query: 79 P 79
P
Sbjct: 322 P 322
>ref|XP_470208.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|27497213|gb|AAO17357.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15451617|gb|AAK98741.1| Hypothetical protein similar
to putative retroelements [Oryza sativa]
Length = 387
Score = 45.4 bits (106), Expect = 4e-04
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTL-APDAQLCVSGCWAVETAQHLFVSCP 79
IW P +V AW + +NRLPT+ NL + L P +LC + +E H+F+ CP
Sbjct: 229 IWRSAAPPRVKFFAWLMSKNRLPTRVNLHKKTILPTPTCELCNAN---LEDTYHIFLRCP 285
Query: 80 I 80
+
Sbjct: 286 M 286
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 45.4 bits (106), Expect = 4e-04
Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
+ IW +PLK+ + AW L+R+RL TK NL+ + + C ETA HL +C
Sbjct: 1034 KFIWDCRMPLKIKLFAWLLVRDRLSTKLNLLKKKIV--QTATCDICSTTDETADHLSFNC 1091
Query: 79 P 79
P
Sbjct: 1092 P 1092
>ref|XP_475401.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|49328070|gb|AAT58770.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 45.1 bits (105), Expect = 5e-04
Identities = 24/62 (38%), Positives = 32/62 (50%), Gaps = 2/62 (3%)
Query: 18 SELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVS 77
+EL+W P K AW L +NR+ T +L RG P+ C +ET QHLF+
Sbjct: 284 TELVWETWAPGKHKFFAWLLAQNRIWTADHLQCRGW--PNNYFCQLCFRNLETVQHLFME 341
Query: 78 CP 79
CP
Sbjct: 342 CP 343
>gb|AAX96297.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 281
Score = 44.3 bits (103), Expect = 8e-04
Identities = 23/60 (38%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCPI 80
IW PLK+ + W +NR+ TK NL RG D + + C ET QHLF P+
Sbjct: 148 IWKFRTPLKIKVFLWLFTKNRILTKDNLYKRGWRKGDKKCQL--CDREETVQHLFFDRPL 205
>gb|AAT38805.1| hypothetical protein PGEC747E24.5 [Solanum demissum]
Length = 1155
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARG-TLAPDAQLCVSG--CWAVETAQHLFV 76
IWH+ +P K+S L W + NRLPT A G L+P C + +E+A+H+F+
Sbjct: 906 IWHKDIPFKMSFLTWKAIINRLPTGAKFKRLGIPLSPTCYCCTNNNIPTTLESAEHIFM 964
>dbj|BAD52658.1| HcrVf2 protein-like [Oryza sativa (japonica cultivar-group)]
Length = 1064
Score = 43.9 bits (102), Expect = 0.001
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVAR--GTLAPDAQL 60
+ +WH PLK + AW L + RLPTK NL R G L P+ L
Sbjct: 823 KFVWHNKAPLKAQLFAWLLAKERLPTKHNLDVRQLGRLRPNGNL 866
>gb|AAX95598.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 43.5 bits (101), Expect = 0.001
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 18 SELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVS 77
++LIW P K AW L NR+ T L RG P+ C +ETAQHLF
Sbjct: 923 ADLIWKTWAPGKHKFFAWLLAHNRIWTADRLQCRGW--PNNYFCQLCFRNLETAQHLFKE 980
Query: 78 CP 79
CP
Sbjct: 981 CP 982
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 43.1 bits (100), Expect = 0.002
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCP 79
+W H K S+LAW ++NRL T +++ A + CV VET HLF +CP
Sbjct: 316 VWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS--CVLCHHLVETRDHLFFTCP 372
>ref|NP_189068.1| expressed protein [Arabidopsis thaliana]
Length = 836
Score = 43.1 bits (100), Expect = 0.002
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCP 79
+W H K S+LAW ++NRL T +++ A + CV VET HLF +CP
Sbjct: 378 VWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSS--CVLCHHLVETRDHLFFTCP 434
>gb|AAD27672.1| putative reverse transcriptase [Oryza sativa]
Length = 331
Score = 41.2 bits (95), Expect = 0.007
Identities = 21/64 (32%), Positives = 33/64 (50%), Gaps = 3/64 (4%)
Query: 20 LIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCP 79
LIW++ +P I W R+RL T AN V + D+ C A+ET+ H+ + C
Sbjct: 174 LIWNKAIPNTCRIFLWLAFRDRLNTNANRVLKKW---DSNPHCMTCPAIETSNHIILRCK 230
Query: 80 IFGD 83
+ G+
Sbjct: 231 LAGE 234
>pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana
gi|9755374|gb|AAF98181.1| F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 40.4 bits (93), Expect = 0.012
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLV---ARGTLAPDAQLCVSGCWAVETAQHLFVS 77
+W RH K ++ W + NRLPT ++ + G+++ + LC + +T +HLF S
Sbjct: 707 VWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNS---KTLEHLFFS 763
Query: 78 C 78
C
Sbjct: 764 C 764
>ref|NP_915116.1| B1078G07.7 [Oryza sativa (japonica cultivar-group)]
Length = 325
Score = 40.0 bits (92), Expect = 0.015
Identities = 22/62 (35%), Positives = 25/62 (39%), Gaps = 2/62 (3%)
Query: 17 VSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFV 76
V ELIWH P K+ W + R T NL RG P + C E HLF
Sbjct: 135 VGELIWHTKAPAKIRFFMWLAAKGRCLTADNLQKRGW--PHSDCCNLCSRKPEDCTHLFT 192
Query: 77 SC 78
C
Sbjct: 193 KC 194
>gb|AAT93947.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 144
Score = 40.0 bits (92), Expect = 0.015
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTL-APDAQLCVSGCWAVETAQHLFVS 77
E IW P +V W + NRLPT NL + T+ + QLC + E H+F++
Sbjct: 11 EFIWKSSAPPRVKFFGWLMTMNRLPTAVNLHKKSTIPSLTCQLCNT---CPEDTDHIFLA 67
Query: 78 CPI 80
P+
Sbjct: 68 YPL 70
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 39.7 bits (91), Expect = 0.020
Identities = 22/68 (32%), Positives = 32/68 (46%), Gaps = 3/68 (4%)
Query: 11 NNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVET 70
N+ + ++W VPLK+ + W L + + TK NL+ R + Q C C ET
Sbjct: 328 NSNVIIHKRILWKVKVPLKIKVFMWFLHKKVILTKDNLIKR-KWRGNKQCCF--CNTQET 384
Query: 71 AQHLFVSC 78
QH F C
Sbjct: 385 IQHFFFDC 392
>ref|XP_471624.1| OSJNBa0029L02.10 [Oryza sativa (japonica cultivar-group)]
gi|39546220|emb|CAE04469.3| OSJNBa0029L02.10 [Oryza
sativa (japonica cultivar-group)]
Length = 389
Score = 39.7 bits (91), Expect = 0.020
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCPI 80
IW VPLK+ I W +N++ TK NL RG A C ET Q LF CP+
Sbjct: 125 IWGLKVPLKIKIFIWMFTKNKILTKDNLFKRGWRKGKAN--CQFCDQTETLQPLFY-CPL 181
>emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa (japonica cultivar-group)]
gi|50923463|ref|XP_472092.1| OSJNBa0061G20.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 39.7 bits (91), Expect = 0.020
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 14 DVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQH 73
D + LIW P K AW +L+NR+ T L R P+ C +E AQH
Sbjct: 1299 DSRAATLIWKTWAPSKCKKFAWLVLQNRIWTSDRLQLRQW--PNNYFCQLCYRNLEMAQH 1356
Query: 74 LFVSCP 79
LF CP
Sbjct: 1357 LFKDCP 1362
>dbj|BAD72443.1| cyst nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 185
Score = 39.7 bits (91), Expect = 0.020
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 18 SELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVS 77
+ LIW P K AW +++NR+ T L RG P+ +C ETA HL +
Sbjct: 23 NRLIWKAWAPHKCKTFAWLIIQNRVWTSDKLATRGW--PNGSICPLCRRTQETALHLLAA 80
Query: 78 C 78
C
Sbjct: 81 C 81
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,364,762
Number of Sequences: 2540612
Number of extensions: 4357363
Number of successful extensions: 13763
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 13705
Number of HSP's gapped (non-prelim): 108
length of query: 83
length of database: 863,360,394
effective HSP length: 59
effective length of query: 24
effective length of database: 713,464,286
effective search space: 17123142864
effective search space used: 17123142864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146554.10