BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146551.3 - phase: 1 /pseudo
(379 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 168 3e-40
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 167 5e-40
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 165 2e-39
ref|NP_912588.1| Putative non-LTR retroelement reverse transcrip... 165 2e-39
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 164 3e-39
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 162 2e-38
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 162 2e-38
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 155 2e-36
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv... 153 7e-36
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 151 4e-35
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 150 8e-35
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 148 2e-34
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 148 3e-34
gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|2540301... 147 4e-34
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 147 5e-34
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 147 7e-34
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 146 9e-34
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 145 2e-33
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 144 4e-33
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 144 6e-33
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 168 bits (425), Expect = 3e-40
Identities = 101/318 (31%), Positives = 162/318 (50%), Gaps = 21/318 (6%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP LF LAAE T+L+ + G+G + ++ LQ+ADDT+ + +
Sbjct: 446 PLSPLLFNLAAEALTLLVQRAEENSLIE--GLGTNGDNKIAILQYADDTIFLINDKLDHA 503
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIGG 185
+ + +L LFE++SGLK+NF+KS + + S + C G+ YLG+PI
Sbjct: 504 KNLKYILCLFEQLSGLKINFNKSEVFCFGEAKEKQDLYSNIFTCKVGSLPLKYLGIPIDQ 563
Query: 186 DPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIISS 245
WK +++ +L W +L SIGGRL+LL LSS+P+Y +SF++ P G+
Sbjct: 564 KRILNKDWKLAENKMEHKLGCWQGRLQSIGGRLILLNSTLSSVPMYMISFYRLPKGVQER 623
Query: 246 IESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTER 305
I+ K F W + RK + W +C + +GGLGV + A N ++LGKW WR+ E
Sbjct: 624 IDYFRKRFLWQEDQGIRKYHLVNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLENE- 682
Query: 306 DELWYRVLKAKYGEE----GGRIREGGRLSSAWWKMVCHIREGLVDWGFTVTEEVSSSFQ 361
+ W ++ AKY + G R++ G SS +W+ V +++ + +
Sbjct: 683 EGWWQEIIYAKYCSDKPLSGLRLKAG---SSHFWQGVMEVKDDFFSFCTKIV-------- 731
Query: 362 FDDGKGEYGEGYGEAWLG 379
G GE + ++WLG
Sbjct: 732 ---GNGEKTLFWEDSWLG 746
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 167 bits (423), Expect = 5e-40
Identities = 98/263 (37%), Positives = 143/263 (54%), Gaps = 8/263 (3%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LF+L + + L+ + +GNG+ +THLQFADD+L C NV
Sbjct: 259 PLSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPA-ITHLQFADDSLFF---CQANV 314
Query: 126 RTMMA---VLLLFEEISGLKVNFHKSMLT-GVNISDSWLVEASALMNCCRGNFTFVYLGV 181
R A V ++E SG K+N KS++T G + S L+N YLG+
Sbjct: 315 RNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGL 374
Query: 182 PIGGDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAG 241
P +K + +IDR+ R +SW+ K LS G+ +LLK V ++PVY +S FK P G
Sbjct: 375 PEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQG 434
Query: 242 IISSIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRM 301
I+S IES+ +F+W R I W+ W + SK EGGLG R + FN +LL K WR+
Sbjct: 435 IVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRI 494
Query: 302 LTERDELWYRVLKAKYGEEGGRI 324
+ + L+ RV+KA+Y ++ I
Sbjct: 495 IQYPNSLFARVMKARYFKDNSII 517
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 165 bits (417), Expect = 2e-39
Identities = 95/256 (37%), Positives = 142/256 (55%), Gaps = 8/256 (3%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LF+L + + L+N + +GNG+ +THLQFADD+L C NV
Sbjct: 794 PLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPA-ITHLQFADDSLFF---CQANV 849
Query: 126 RTMMA---VLLLFEEISGLKVNFHKSMLT-GVNISDSWLVEASALMNCCRGNFTFVYLGV 181
R A V ++E SG K+N KSM+T G + S + ++ YLG+
Sbjct: 850 RNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGL 909
Query: 182 PIGGDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAG 241
P +K ++ +IDR+ R S+W+ + LS G+ ++LK V ++PVY +S FK P G
Sbjct: 910 PEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKG 969
Query: 242 IISSIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRM 301
I+S IES+ +F+W R I W+ W + SK EGGLG R + FN +LL K WR+
Sbjct: 970 IVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRL 1029
Query: 302 LTERDELWYRVLKAKY 317
+ + L+ RV+KA+Y
Sbjct: 1030 IQYPNSLFARVMKARY 1045
>ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|22748339|gb|AAN05341.1|
Putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 603
Score = 165 bits (417), Expect = 2e-39
Identities = 94/255 (36%), Positives = 136/255 (52%), Gaps = 8/255 (3%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFG---VGNGSEVRVTHLQFADDTLIIGEKCW 122
PLSP LF L A+ ++L+ + V NG + LQ+ADDT++ E
Sbjct: 92 PLSPILFNLVADMLSILIQRAKDQGRFQGVIPHLVDNGLSI----LQYADDTILFMEHDL 147
Query: 123 LNVRTMMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVP 182
V+ + VL FE+++GLK+NFHKS L S E L C G + F YLG+P
Sbjct: 148 DEVKNLKLVLSTFEKLAGLKINFHKSELFCYGKSKFAENEYVMLFGCRSGTYPFRYLGIP 207
Query: 183 IGGDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGI 242
+ W+ + +R +LSSW K LS+GGRLVL+ VLSSL ++ LSFF+ P GI
Sbjct: 208 MHHKKLSNKDWQIIEERFQRKLSSWKGKCLSVGGRLVLINSVLSSLAMFMLSFFEVPKGI 267
Query: 243 ISSIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRML 302
+ ++ FFW RK +W IC K GGLG++ + N LL KW ++++
Sbjct: 268 LKKLDYYRSRFFWQSDGHKRKYRLARWSVICTPKDCGGLGIQNLNVQNKCLLSKWLYKLI 327
Query: 303 TERDELWYRVLKAKY 317
E D +W ++L+ KY
Sbjct: 328 NE-DGVWQKLLRKKY 341
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 164 bits (416), Expect = 3e-39
Identities = 95/256 (37%), Positives = 141/256 (54%), Gaps = 8/256 (3%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LF+L + + L+N + +GNG+ +THLQFADD+L C NV
Sbjct: 1020 PLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPA-ITHLQFADDSLFF---CQANV 1075
Query: 126 RTMMA---VLLLFEEISGLKVNFHKSMLT-GVNISDSWLVEASALMNCCRGNFTFVYLGV 181
R A V ++E SG K+N KSM+T G + S ++ YLG+
Sbjct: 1076 RNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGL 1135
Query: 182 PIGGDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAG 241
P +K ++ +IDR+ R S+W+ + LS G+ ++LK V ++PVY +S FK P G
Sbjct: 1136 PEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKG 1195
Query: 242 IISSIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRM 301
I+S IES+ +F+W R I W+ W + SK EGGLG R + FN +LL K WR+
Sbjct: 1196 IVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRL 1255
Query: 302 LTERDELWYRVLKAKY 317
+ + L+ RV+KA+Y
Sbjct: 1256 IQYPNSLFARVMKARY 1271
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 162 bits (410), Expect = 2e-38
Identities = 94/256 (36%), Positives = 139/256 (53%), Gaps = 2/256 (0%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LF+L A+ L+ V +GNG VTHLQFADD+L + N
Sbjct: 1000 PLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVP-GVTHLQFADDSLFFCQSNVRNC 1058
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLT-GVNISDSWLVEASALMNCCRGNFTFVYLGVPIG 184
+ + V ++E SG K+N KSM+T G + + ++ YLG+P
Sbjct: 1059 QALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQ 1118
Query: 185 GDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIIS 244
+K + +I+R+ R SSW+ K LS G+ ++LK V S+PVY +S FK P I+S
Sbjct: 1119 FGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVS 1178
Query: 245 SIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTE 304
IE++ +F+W + R+I WI W + SK EGGLG R + FN +LL K WRM+
Sbjct: 1179 EIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINN 1238
Query: 305 RDELWYRVLKAKYGEE 320
+ L+ R++KA+Y E
Sbjct: 1239 PNSLFARIMKARYFRE 1254
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 162 bits (410), Expect = 2e-38
Identities = 94/256 (36%), Positives = 139/256 (53%), Gaps = 2/256 (0%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LF+L A+ L+ V +GNG VTHLQFADD+L + N
Sbjct: 1020 PLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVP-GVTHLQFADDSLFFCQSNVRNC 1078
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLT-GVNISDSWLVEASALMNCCRGNFTFVYLGVPIG 184
+ + V ++E SG K+N KSM+T G + + ++ YLG+P
Sbjct: 1079 QALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQ 1138
Query: 185 GDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIIS 244
+K + +I+R+ R SSW+ K LS G+ ++LK V S+PVY +S FK P I+S
Sbjct: 1139 FGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVS 1198
Query: 245 SIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTE 304
IE++ +F+W + R+I WI W + SK EGGLG R + FN +LL K WRM+
Sbjct: 1199 EIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINN 1258
Query: 305 RDELWYRVLKAKYGEE 320
+ L+ R++KA+Y E
Sbjct: 1259 PNSLFARIMKARYFRE 1274
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 155 bits (391), Expect = 2e-36
Identities = 95/315 (30%), Positives = 163/315 (51%), Gaps = 19/315 (6%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP LF L A+ + ++N + H G +THLQ+ADDT++ N+
Sbjct: 182 PLSPLLFNLVADALSEMLNNAKQA-VPHLVPGG------LTHLQYADDTILFMTNTEENI 234
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIGG 185
T+ +L +E +SGLK+N+ KS + + + + L NC G F YLG+PI
Sbjct: 235 VTVKFLLYCYEAMSGLKINYQKSEIMVIGGDEMETQRVADLFNCQAGKMPFTYLGIPISM 294
Query: 186 DPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIISS 245
+ + ++I RL++W LS GG+ +L+ LSS+P+Y + + P G+ +
Sbjct: 295 NKLTNADLDIPPNKIEKRLATWKCGYLSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNK 354
Query: 246 IESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTER 305
++SI FFW G E+ RK IKW+ +C K GGLG N++LL KW +R+ + +
Sbjct: 355 MDSIRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGK 414
Query: 306 DELWYRVLKAKYGEEGGR-IREGGRLSSAWWKMVCHIREGLVDWGFTVTEEVSSSFQFDD 364
++ +L+ KY ++GG + SS +WK + +++ + ++ SS++ +
Sbjct: 415 EDPCCVLLRNKYMKDGGGFFQSKAEESSQFWKGLHEVKKWM---------DLGSSYKVGN 465
Query: 365 GKGEYGEGYGEAWLG 379
GK + + W+G
Sbjct: 466 GKAT--NFWSDVWIG 478
>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
sativa (japonica cultivar-group)]
Length = 593
Score = 153 bits (387), Expect = 7e-36
Identities = 98/254 (38%), Positives = 136/254 (52%), Gaps = 12/254 (4%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP LF L A+ VL+ H + + + ++ LQ+ADDT++ E +
Sbjct: 89 PLSPLLFNLVADMLAVLIQRTSEHGKIHGV-IPHLVDDGLSILQYADDTILFMEHDLEDA 147
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIGG 185
+ + VL FE +SGLK+NFHKS L + E + L C G++T YLG+P+
Sbjct: 148 KNLKLVLSAFERLSGLKINFHKSELLCFGKAIEVEREYALLFGCKTGSYTLKYLGLPM-- 205
Query: 186 DPRKLSF--WKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGII 243
RKLS WK V +R RL SW KLLS+GGRLVL+ VLSSL +Y LSFF+ P GII
Sbjct: 206 HYRKLSNKDWKEVEERFQKRLGSWKGKLLSVGGRLVLINSVLSSLAMYMLSFFEVPKGII 265
Query: 244 SSIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLT 303
++ FFW E +K +W +C K GGLG++ + N LL R L
Sbjct: 266 KKLDYYRSRFFWQSDEHKKKYRLARWSVLCKPKECGGLGIQNLEVQNKCLL-----RGLA 320
Query: 304 ERDELWYRVLKAKY 317
+ +W +L+ KY
Sbjct: 321 KL--VWQNLLRKKY 332
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 151 bits (381), Expect = 4e-35
Identities = 93/288 (32%), Positives = 148/288 (51%), Gaps = 10/288 (3%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LF+L E L+ A VG + V G +++H+ FADD ++ E +
Sbjct: 501 PLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGS-KLSHVCFADDLILFAEASVAQI 559
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLT---GVNISDSWLVEASALMNCCRGNFTFVYLGVP 182
R + VL F E SG KV+ KS + V+ L+ + + C + YLG+P
Sbjct: 560 RIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKE--LGKYLGMP 617
Query: 183 IGGDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGI 242
I + V++R+ RL+ W + LS+ GR+ L K VLSS+PV+ +S P
Sbjct: 618 ILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVST 677
Query: 243 ISSIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRML 302
+ +++ ++F WG E +K + W IC KAEGG+G+R N +L+ K WR+L
Sbjct: 678 LDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLL 737
Query: 303 TERDELWYRVLKAKYGEEGGR----IREGGRLSSAWWKMVCHIREGLV 346
+++ LW RV++ KY G + ++ R SS W + +RE +V
Sbjct: 738 QDKESLWARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVV 785
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 150 bits (378), Expect = 8e-35
Identities = 84/239 (35%), Positives = 129/239 (53%), Gaps = 5/239 (2%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP LF + L+N + + + ++ LQ+ DD ++
Sbjct: 871 PLSPILFNFIVDMLATLINRAKTQGQVDGL-IPHLIDGGLSILQYVDDIVLFMNHDLEKA 929
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIGG 185
+ M +VLL FE++SGLK+NFHKS L + + + + L C GNF F YLG+PI
Sbjct: 930 QNMKSVLLAFEQLSGLKINFHKSELYCFGEALEYRDQYAQLFGCQVGNFPFRYLGIPIHC 989
Query: 186 DPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIISS 245
+ + WK V++R +LSSW KLLS+GGRL L+ VLSSLP+Y +SF P+G++
Sbjct: 990 RKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTLINSVLSSLPMYMMSFLAIPSGVLKK 1049
Query: 246 IESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKW--CWRML 302
++ + F+W G +K KWD IC K +G LG+ + ++L+ +W W +L
Sbjct: 1050 LDYLRSRFYWQGDGHKKKYQLAKWDIICRPKDQGRLGIHDLEV--ITLVTRWLRTWAIL 1106
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 148 bits (374), Expect = 2e-34
Identities = 87/255 (34%), Positives = 132/255 (51%), Gaps = 8/255 (3%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFG---VGNGSEVRVTHLQFADDTLIIGEKCW 122
PLSP LF L + +L+ + V NG + LQ+ADDT++ +
Sbjct: 1354 PLSPILFNLVVDMLAILIQRAKDQGRFKGVVPHLVDNGLSI----LQYADDTILFMDHDL 1409
Query: 123 LNVRTMMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVP 182
R + VL FE++S LK+NF+KS L + E L C ++ F YLG+
Sbjct: 1410 DEARDLKLVLSTFEKLSSLKINFYKSELFCYGKAKDVEHEYVKLFGCDTEDYPFKYLGIR 1469
Query: 183 IGGDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGI 242
+ W+ V +RI +LSSW K LS+GGRLVL+ VLS+L ++ LSFF+ P GI
Sbjct: 1470 MHHKRINNKDWQGVEERIQKKLSSWKGKFLSVGGRLVLINSVLSNLAIFMLSFFEIPKGI 1529
Query: 243 ISSIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRML 302
+ ++ FFW E +K +W +C K GGLG++ + N LL KW ++++
Sbjct: 1530 LKKLDYYRSRFFWQCDEHKKKYRLARWSVLCKPKECGGLGIQNLEIQNKCLLSKWLYKLI 1589
Query: 303 TERDELWYRVLKAKY 317
E + +W +L+ KY
Sbjct: 1590 NE-EGVWQDILRNKY 1603
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 148 bits (373), Expect = 3e-34
Identities = 89/280 (31%), Positives = 142/280 (49%), Gaps = 2/280 (0%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP LF L ++ ++++ + V + +THLQ+ADDT++ +
Sbjct: 1265 PLSPLLFNLISDALAAMLDSAKREGVLSGL-VPDIFPGGITHLQYADDTVLFVANDDKQI 1323
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIGG 185
+L FEE++ LKVN+HKS + + +SD+ + + NC G F YLG+PIG
Sbjct: 1324 VATKFILYCFEEMAVLKVNYHKSEIFTLGLSDNDTNRVAMMFNCPVGQFPMKYLGLPIGP 1383
Query: 186 DPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIISS 245
D + + ++ RL+SW N L S GR V + LSS+P Y + F++ P G+
Sbjct: 1384 DKILNLGFDFLGQKLEKRLNSWGNNL-SHAGRAVQINTCLSSIPSYAMCFYQLPEGVHQK 1442
Query: 246 IESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTER 305
SI ++W K +KW+ + K GGLG N +LL KW ++ +E
Sbjct: 1443 FGSIRGRYYWARNRLKGKYHMVKWEDLAFPKDYGGLGFTETRRMNTALLAKWIMKIESED 1502
Query: 306 DELWYRVLKAKYGEEGGRIREGGRLSSAWWKMVCHIREGL 345
D L +L+ KY ++GG + R +S +WK + +IR L
Sbjct: 1503 DSLCIELLRRKYLQDGGFFQCKERYASQFWKGLLNIRRWL 1542
>gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|25403016|pir||D86384
unknown protein [imported] - Arabidopsis thaliana
Length = 1213
Score = 147 bits (372), Expect = 4e-34
Identities = 104/322 (32%), Positives = 160/322 (49%), Gaps = 14/322 (4%)
Query: 30 LAEMDK*VCWDSNGID-PCKWESYGGISD*AWSSPRG-----PLSPFLFLLAAEGFTVLM 83
LA +K + W S I P S G + + S +G PLSP+LF+LA E F+ L+
Sbjct: 613 LAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLL 672
Query: 84 NAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNVRTMMAVLLLFEEISGLKV 143
++ + + H S + ++HL FADD +I + ++ + L F SGLKV
Sbjct: 673 HSRYESGLIHYHP--KASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKV 730
Query: 144 NFHKS--MLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIGGDPRKLSFWKPVIDRIV 201
N KS L G+N +S A+A G YLG+P+ +++ ++P++++I
Sbjct: 731 NKDKSHLYLAGLNQLES---NANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKIT 787
Query: 202 GRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIISSIESIFKSFFWGGGEEN 261
R SW NK LS GR+ L+ V+ +++S F P G I IES+ F W G E
Sbjct: 788 ARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQ 847
Query: 262 RKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTERDELWYRVLKAKYGEEG 321
K + W +CL K+EGGLG+RR+ +N +L + WR+ +D LW + G
Sbjct: 848 AKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRG 907
Query: 322 G-RIREGGRLSSAWWKMVCHIR 342
EGG+ S WK + +R
Sbjct: 908 SFWAVEGGQSDSWTWKRLLSLR 929
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 147 bits (371), Expect = 5e-34
Identities = 83/253 (32%), Positives = 132/253 (51%), Gaps = 2/253 (0%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LF+L E + ++ V S V+HL FADD+L +
Sbjct: 422 PLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPA-VSHLLFADDSLFFCKANKEQC 480
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLT-GVNISDSWLVEASALMNCCRGNFTFVYLGVPIG 184
++ +L +E +SG ++NF KS + G + DS + ++ YLG+P
Sbjct: 481 GIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPES 540
Query: 185 GDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIIS 244
K + V DR+ R++ W+ K LS GG+ V++K V ++LP Y +S F+ P I S
Sbjct: 541 LGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITS 600
Query: 245 SIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTE 304
+ S F+W ++R + W+ WD +C SK++GGLG R + FN +LL K WR++T
Sbjct: 601 KLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITA 660
Query: 305 RDELWYRVLKAKY 317
D L+ +V K +Y
Sbjct: 661 PDSLFAKVFKGRY 673
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 147 bits (370), Expect = 7e-34
Identities = 91/275 (33%), Positives = 142/275 (51%), Gaps = 10/275 (3%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LF++ E ++ + + V G+ ++HL FADD++ C +N
Sbjct: 638 PLSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPP-ISHLLFADDSMFY---CKVND 693
Query: 126 RTMMAVLLLFEEIS---GLKVNFHKSMLT-GVNISDSWLVEASALMNCCRGNFTFVYLGV 181
+ ++ + EE S G +VN+ KS + G +IS+ + R VYLG+
Sbjct: 694 EALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGL 753
Query: 182 PIGGDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAG 241
P K++ + DR+ ++ W + LS GG+ +LLK V +LP Y +S FK P
Sbjct: 754 PESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKT 813
Query: 242 IISSIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRM 301
I IES+ F+W +E R + W W + KA GGLG + + AFN++LLGK WRM
Sbjct: 814 ICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRM 873
Query: 302 LTERDELWYRVLKAKYGEEGGRIRE--GGRLSSAW 334
+TE+D L +V K++Y + + G R S AW
Sbjct: 874 ITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAW 908
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 146 bits (369), Expect = 9e-34
Identities = 86/272 (31%), Positives = 139/272 (50%), Gaps = 4/272 (1%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP+LFLL AEGF+ L++ H + G+ V+HL FADD+LI+
Sbjct: 839 PLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAP-SVSHLLFADDSLILCRANGGEA 897
Query: 126 RTMMAVLLLFEEISGLKVNFHKS-MLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIG 184
+ + +L ++EE SG +N KS ++ N S A +N R YLG+P+
Sbjct: 898 QQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVF 957
Query: 185 GDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIIS 244
+ + + +RI R+ W KLLS G+ +L+K V +P + + F+ +
Sbjct: 958 VGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCD 1017
Query: 245 SIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTE 304
I + ++W E++ K+ W+ W+ + L K GGLG R + FN+++L K WR++ +
Sbjct: 1018 QISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQD 1077
Query: 305 RDELWYRVLKAKYGEEGG--RIREGGRLSSAW 334
D L RVL+AKY G R ++ +S W
Sbjct: 1078 PDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTW 1109
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 145 bits (366), Expect = 2e-33
Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 14/315 (4%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
P+SP+L+LL EG + L+ A + H F ++HL FA D+L+ +
Sbjct: 93 PISPYLYLLCTEGLSALIQASIKAKQLHGFKASRNGPA-ISHLLFAHDSLVFCKATLEEC 151
Query: 126 RTMMAVLLLFEEISGLKVNFHKS-MLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIG 184
T++ VL L+E+ SG VNF KS +L G + + S L+ + YLG+P
Sbjct: 152 MTLVNVLKLYEKASGQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEF 211
Query: 185 GDPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIIS 244
K + + + + ++ +W NKLLS G+ VL+K +++++P Y +S F P +I
Sbjct: 212 VGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIH 271
Query: 245 SIESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTE 304
I S + F+W + KI W+ W + K GGL +R + FN++LL K WR+L +
Sbjct: 272 QITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQ 331
Query: 305 RDELWYRVLKAKYGEEGGRIREGGRLSSAW-WKMVCHIREGLVDWGFTVTEEVSSSFQFD 363
L RV KAKY + + S++ WK + H T+ +S ++
Sbjct: 332 PFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILH-----------GTKLISRGLKYI 380
Query: 364 DGKGEYGEGYGEAWL 378
G G + + + WL
Sbjct: 381 AGNGNNIQLWKDNWL 395
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 144 bits (363), Expect = 4e-33
Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 2/232 (0%)
Query: 66 PLSPFLFLLAAEGFTVLMNAVVGTDMYHSFGVGNGSEVRVTHLQFADDTLIIGEKCWLNV 125
PLSP LF LAA+ +L+ + G+G +V LQ+ADDT+ +
Sbjct: 608 PLSPLLFNLAAKALILLVQRAEDNLLIE--GLGENDNNKVVILQYADDTIFLLPDNETYA 665
Query: 126 RTMMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIGG 185
+ + +L LFE++SGLK+NF+KS + + + S + C G YLG+P+
Sbjct: 666 KNLKYILCLFEQLSGLKINFNKSEVFCIGEAADKAEVFSQIFTCSVGVLPMKYLGIPLDQ 725
Query: 186 DPRKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIISS 245
W+ +++ +L W KL SIGGRL+L+ LSS+P+Y +SFFK P G+
Sbjct: 726 KRITKKDWRNAENKMESKLGCWQGKLQSIGGRLILINSSLSSVPMYMISFFKLPKGVKEK 785
Query: 246 IESIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKW 297
++ + F W + RK ++W IC + +GGLGV + N +LLGKW
Sbjct: 786 MDFFRRRFLWQEDQGIRKYHLVQWPIICSPRDQGGLGVLDLDIMNKALLGKW 837
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 144 bits (362), Expect = 6e-33
Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 1/190 (0%)
Query: 128 MMAVLLLFEEISGLKVNFHKSMLTGVNISDSWLVEASALMNCCRGNFTFVYLGVPIGGDP 187
M A+L +FE +SGLK+NFHKS + + + L C G+F F YLG+PI
Sbjct: 1 MKAILCVFEHLSGLKINFHKSEIFCFGGAKEMEDQYRQLFGCNSGSFPFRYLGIPIHYRK 60
Query: 188 RKLSFWKPVIDRIVGRLSSWNNKLLSIGGRLVLLKVVLSSLPVYFLSFFKAPAGIISSIE 247
+ S WK V D +LS+W K S GGRLVLL VLSSLP++ L FF+ P G++ ++
Sbjct: 61 LRNSDWKCVEDMFQRKLSTWKGKNNSYGGRLVLLNSVLSSLPMFMLLFFEIPRGVLQRLD 120
Query: 248 SIFKSFFWGGGEENRKIAWIKWDTICLSKAEGGLGVRRMGAFNVSLLGKWCWRMLTERDE 307
SFFW + +K KWD I K +GGLGV + N LL KW +++L +
Sbjct: 121 YYRSSFFWSSDSQKKKYRLTKWDYIYRLKDQGGLGVLNLDIMNRCLLSKWLFKLL-NGEG 179
Query: 308 LWYRVLKAKY 317
LW +L+ KY
Sbjct: 180 LWQNLLRNKY 189
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.331 0.146 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 680,956,059
Number of Sequences: 2540612
Number of extensions: 29586059
Number of successful extensions: 84058
Number of sequences better than 10.0: 402
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 83248
Number of HSP's gapped (non-prelim): 559
length of query: 379
length of database: 863,360,394
effective HSP length: 130
effective length of query: 249
effective length of database: 533,080,834
effective search space: 132737127666
effective search space used: 132737127666
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 76 (33.9 bits)
Medicago: description of AC146551.3