BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146549.14 + phase: 0 /pseudo/partial
         (221 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG24105.1| Hypothetical protein F41B5.9 [Caenorhabditis eleg...    37  0.53
emb|CAI75514.1| hypothetical protein [Theileria annulata]              33  7.6

>gb|AAG24105.1| Hypothetical protein F41B5.9 [Caenorhabditis elegans]
           gi|17560846|ref|NP_503620.1| nuclear receptor NHR-55
           family member (5C734) [Caenorhabditis elegans]
           gi|7503139|pir||T32041 hypothetical protein F41B5.9 -
           Caenorhabditis elegans
          Length = 502

 Score = 36.6 bits (83), Expect = 0.53
 Identities = 26/90 (28%), Positives = 43/90 (46%), Gaps = 2/90 (2%)

Query: 113 LSMQLKCLRHTHICRILSIRSSHRFIISTLCHRANLRFLSMPSLNRYNINCRFNNNNKIS 172
           L++ +  L    IC   S   +H  +IS     A  R  ++ S  + N+NC  +NN++I+
Sbjct: 24  LTIAVMLLSECEICGQPS-HGNHFGVISCRACAAFFRRATLNSKKKLNLNCFHDNNSEIN 82

Query: 173 KLGLLSLRYRCYMLSCFQLYSREGIVQLDR 202
           K G  S + +C +  C +        QLDR
Sbjct: 83  KNGFFSCK-KCRLKKCLEKGMDASKFQLDR 111


>emb|CAI75514.1| hypothetical protein [Theileria annulata]
          Length = 189

 Score = 32.7 bits (73), Expect = 7.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 148 LRFLSMPSLNRYNINCRFNNNNKISKLGL 176
           L F+ +P++N+ NIN   N NN IS++ L
Sbjct: 9   LNFIYIPNINKNNINNNINKNNMISRMSL 37


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.340    0.147    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,799,996
Number of Sequences: 2540612
Number of extensions: 12171381
Number of successful extensions: 40928
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40927
Number of HSP's gapped (non-prelim): 2
length of query: 221
length of database: 863,360,394
effective HSP length: 123
effective length of query: 98
effective length of database: 550,865,118
effective search space: 53984781564
effective search space used: 53984781564
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 72 (32.3 bits)