BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146527.10 - phase: 0 /pseudo
(129 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 48 5e-05
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 46 2e-04
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 46 2e-04
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 46 2e-04
gb|AAT38702.1| putative RNase H domain containing protein [Solan... 46 2e-04
ref|XP_463133.1| putative reverse transcriptase [Oryza sativa (j... 45 3e-04
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 45 5e-04
gb|AAV43906.1| hypothetical protein [Oryza sativa (japonica cult... 44 7e-04
gb|AAP52553.1| putative reverse transcriptase [Oryza sativa (jap... 44 9e-04
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 44 9e-04
gb|AAX96066.1| retrotransposon protein, putative, unclassified [... 41 0.006
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 41 0.007
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 41 0.007
gb|AAQ56326.1| putative reverse transcriptase [Oryza sativa (jap... 41 0.007
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 40 0.010
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 40 0.010
emb|CAD41337.2| OJ991113_30.21 [Oryza sativa (japonica cultivar-... 40 0.013
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 40 0.013
emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultiva... 40 0.016
gb|AAX95313.1| hypothetical protein [Oryza sativa (japonica cult... 39 0.022
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 48.1 bits (113), Expect = 5e-05
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGS-S 59
+++S + L +L KY + S SSPTW I+ +LK+G WRIG GS +
Sbjct: 861 LIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKT 920
Query: 60 SFWFSNWNSLG 70
W ++W + G
Sbjct: 921 KIWRNHWVAHG 931
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ + L +L KY + + S SNSSP W SI ++LK+G WR+G+G+S
Sbjct: 1607 LITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSI 1666
Query: 60 SFWFSNW 66
W +W
Sbjct: 1667 RIWRDSW 1673
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
+++ N L +L KY + + S+N+SPTW I ++LK+G WRIG+G+S
Sbjct: 1357 LIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSV 1416
Query: 60 SFWFSNW 66
W W
Sbjct: 1417 RIWRDPW 1423
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
+++ N L +L KY + + S+N+SPTW I ++LK+G WRIG+G+S
Sbjct: 1513 LIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSV 1572
Query: 60 SFWFSNW 66
W W
Sbjct: 1573 RIWRDPW 1579
>gb|AAT38702.1| putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 45.8 bits (107), Expect = 2e-04
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 8 LWVSLLSNK--YTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSN 65
LW SL + K Y + + + SS S TWS +++ ++ ++ W I +G+ S W+ N
Sbjct: 36 LWASLEATKRIYCSRVHPVAKAKSSKQSHTWSKMLKIRHSVENNILWIIYAGNVSMWWDN 95
Query: 66 WNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHI 119
W G + + +P H +V+D + L LP V N I +I I
Sbjct: 96 WMGNGALSNILP-PPSHYNKDNVKDFIHKREWDFDKLSDILPPQVVNQIVSIPI 148
>ref|XP_463133.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|40786609|gb|AAR89884.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 256
Score = 45.4 bits (106), Expect = 3e-04
Identities = 24/62 (38%), Positives = 32/62 (50%), Gaps = 1/62 (1%)
Query: 6 NKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS-SFWFS 64
+ L +L KY N L + S SSPTW +I +LKEG WRIG+G++ W
Sbjct: 3 DSLCARILKAKYYPHGNLLDTAFPSVSSPTWKAIEHGLQLLKEGVIWRIGNGTNIKIWRH 62
Query: 65 NW 66
W
Sbjct: 63 RW 64
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 44.7 bits (104), Expect = 5e-04
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ + L +L KY + + S SNSSP W SI ++LK+G WR+G+G+S
Sbjct: 283 LITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSI 342
Query: 60 SFWFSNW 66
W W
Sbjct: 343 RIWRDPW 349
>gb|AAV43906.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55167961|gb|AAV43830.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 697
Score = 44.3 bits (103), Expect = 7e-04
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGS-GSS 59
++ N L LL KY + + SN+SPTW I +LK+G WRIG ++
Sbjct: 307 LIAEPNSLCARLLKAKYYPNGSLTDTAFPSNTSPTWKGIEHGLELLKKGLIWRIGDRRTT 366
Query: 60 SFWFSNWNSLG 70
W + W + G
Sbjct: 367 KIWRNRWVAHG 377
>gb|AAP52553.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37531928|ref|NP_920266.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|22138478|gb|AAM93462.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 566
Score = 43.9 bits (102), Expect = 9e-04
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q+ + L LL KY N L A + S +W SI++ +L++G WR+G+G
Sbjct: 263 LIQNPDSLCSRLLKAKYFPNCNVLDAQSRKQMSYSWRSILKGIQLLRKGVIWRVGNGEHI 322
Query: 60 SFWFSNW 66
+ W W
Sbjct: 323 NIWSDPW 329
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 43.9 bits (102), Expect = 9e-04
Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ + + L +L KY + + S N+SP W +I ++LKEG WRIG+G S
Sbjct: 384 LIVNPDSLCARVLKAKYFPNGSLVDTSFGGNASPVWKAIEYGLSLLKEGIIWRIGNGKSV 443
Query: 60 SFWFSNW 66
W W
Sbjct: 444 RIWRDPW 450
>gb|AAX96066.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 857
Score = 41.2 bits (95), Expect = 0.006
Identities = 19/69 (27%), Positives = 34/69 (48%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSS 60
++++ N L +L KY + AS + S WSSI++ +++L W++ G S
Sbjct: 642 ILENPNNLVSKILKEKYFPHGSFWKASTKTPKSAFWSSILKIRHLLDNSIIWQLSQGDIS 701
Query: 61 FWFSNWNSL 69
W W S+
Sbjct: 702 IWNQPWCSV 710
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 40.8 bits (94), Expect = 0.007
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ S L +L KY + + S S W SII + ILKEG W I +G
Sbjct: 768 LLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKV 827
Query: 60 SFWFSNWNSLG-PIGSYVPIIDIH-DLHLSV---RDVLSAPGNHTQVLYTNLPSAVE 111
S W W S+ P+ P + H DL +S ++ L N V+ N + ++
Sbjct: 828 SIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILPNYENLIK 884
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 40.8 bits (94), Expect = 0.007
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ + + L +L KY + + S N+SP W +I ++K+G WRIG+G S
Sbjct: 1242 LIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSV 1301
Query: 60 SFWFSNW 66
W W
Sbjct: 1302 RVWQDPW 1308
>gb|AAQ56326.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 284
Score = 40.8 bits (94), Expect = 0.007
Identities = 21/61 (34%), Positives = 30/61 (48%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSS 60
++Q + L LL KY + A +SS TW S+ +LK+G WRIG G+
Sbjct: 93 LIQFPDSLCARLLKAKYFPNSELIDAVFLGDSSVTWKSLEYGLQLLKKGLIWRIGDGTKK 152
Query: 61 F 61
F
Sbjct: 153 F 153
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 40.4 bits (93), Expect = 0.010
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q L + KY L A A+S SS W SI+ ++ G + G+G++
Sbjct: 328 ILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNI 387
Query: 60 SFWFSNWNSLGPIGSYVPIIDIHDLHLSVRDVL 92
W NW L P V D L V D+L
Sbjct: 388 QLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLL 420
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 40.4 bits (93), Expect = 0.010
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q + L +L KY + +SN S TW SI + +L+ G WR+G GS
Sbjct: 1074 LIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKI 1133
Query: 60 SFWFSNW 66
+ W W
Sbjct: 1134 NIWADPW 1140
>emb|CAD41337.2| OJ991113_30.21 [Oryza sativa (japonica cultivar-group)]
gi|50925420|ref|XP_472970.1| OJ991113_30.21 [Oryza
sativa (japonica cultivar-group)]
Length = 541
Score = 40.0 bits (92), Expect = 0.013
Identities = 20/67 (29%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q + L +L KY + A ++ SPTW ++ +LK+G WRIG G
Sbjct: 24 LIQYHDSLCARILKAKYYPNCELIDAVFPADVSPTWKAVEHGLELLKKGLIWRIGDGRKV 83
Query: 60 SFWFSNW 66
W W
Sbjct: 84 RIWKDQW 90
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 40.0 bits (92), Expect = 0.013
Identities = 19/67 (28%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q N L+ ++Y + L A + S W SI+ +++L +G+ ++G+GSS
Sbjct: 875 LLQFPNSLFARFFKSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSST 934
Query: 60 SFWFSNW 66
S W W
Sbjct: 935 SVWMDPW 941
>emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultivar-group)]
Length = 779
Score = 39.7 bits (91), Expect = 0.016
Identities = 22/70 (31%), Positives = 31/70 (43%), Gaps = 1/70 (1%)
Query: 11 SLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS-SFWFSNWNSL 69
+LL KY G S+ S W S++ KN +K G + IG+G + FW W
Sbjct: 530 NLLRKKYLGQGGGFFQSSPEGGSQFWKSLLEVKNWMKLGSAYNIGNGEAVRFWDDVWLGE 589
Query: 70 GPIGSYVPII 79
P+ P I
Sbjct: 590 VPLKIQFPYI 599
>gb|AAX95313.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1063
Score = 39.3 bits (90), Expect = 0.022
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Query: 20 GHNTLL-ASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS-SFWFSNWNSLG 70
G +L+ S S+++SP W SI +LK+G WR+G+G S W W S G
Sbjct: 573 GRTSLIDTSFSASASPGWRSIEYGLELLKKGIIWRVGNGRSIRIWRDPWISRG 625
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,736,605
Number of Sequences: 2540612
Number of extensions: 10183816
Number of successful extensions: 22812
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 22758
Number of HSP's gapped (non-prelim): 132
length of query: 129
length of database: 863,360,394
effective HSP length: 105
effective length of query: 24
effective length of database: 596,596,134
effective search space: 14318307216
effective search space used: 14318307216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146527.10