BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146333.2 - phase: 0
(615 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_475471.1| putative polyprotein [Oryza sativa (japonica cu... 239 2e-61
ref|NP_908336.1| putative polyprotein [Oryza sativa (japonica cu... 239 2e-61
ref|XP_463281.1| putative polyprotein [Oryza sativa (japonica cu... 237 9e-61
ref|XP_493959.1| Similar to Sorghum bicolor 22 kDa kafirin clust... 236 1e-60
ref|XP_474155.1| OSJNBa0060D06.14 [Oryza sativa (japonica cultiv... 235 3e-60
gb|AAP53008.1| putative polyprotein [Oryza sativa (japonica cult... 234 5e-60
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 234 5e-60
gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-... 233 2e-59
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 233 2e-59
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 232 3e-59
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar... 232 3e-59
gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cult... 229 2e-58
gb|AAP52470.1| putative polyprotein [Oryza sativa (japonica cult... 229 2e-58
gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica] 228 3e-58
ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultiva... 228 4e-58
ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultiv... 228 4e-58
ref|NP_914275.1| putative polyprotein [Oryza sativa (japonica cu... 228 4e-58
ref|NP_908773.1| putative polyprotein [Oryza sativa (japonica cu... 228 6e-58
gb|AAP52880.1| putative retroelement [Oryza sativa (japonica cul... 227 7e-58
gb|AAM74400.1| Putative retroelement [Oryza sativa (japonica cul... 227 7e-58
>ref|XP_475471.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50080316|gb|AAT69650.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1458
Score = 239 bits (609), Expect = 2e-61
Identities = 177/572 (30%), Positives = 271/572 (46%), Gaps = 61/572 (10%)
Query: 14 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 73
Q QA QQ N+ G+ L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQQQAQLQQQNLQFGSPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQC 129
Query: 74 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 133
E++KV F THQL A WW + T GA +TW FR F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVT-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKRE 188
Query: 134 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 193
F L+QG +V EY +F L+++ P +AE R KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNLLARYAPEDVRTDAE--RQEKFLSGLDDELTNQLISRDYED 246
Query: 194 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP-----KPYSAPADKGKQKMVDVR--R 246
F+ LV+ EE H +N ++ Q P KP G + +R R
Sbjct: 247 FEKLVDKAIRQEE----HCNKINRKRKAAQFRTPQGKSQKPRFTMGRHGGPSTMIIRQHR 302
Query: 247 PKKKDAAEIVCFNCGEKG---HKSNACPEEIK------------KCVRCGKKGHVVADCN 291
P + N H N P +K + R G+K
Sbjct: 303 PYHPGSFNKNHHNGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE------ 356
Query: 292 RTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPL 348
+CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP
Sbjct: 357 ----LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPA 412
Query: 349 VAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDF 408
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 413 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIF 471
Query: 409 EMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERD 468
+L+ L +DVILGM+WL + +I+C S+++ ++ + E + T Q +
Sbjct: 472 PANLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSLVPRKP 526
Query: 469 GILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLVP 521
GI SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLVP
Sbjct: 527 GI---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVP 583
Query: 522 GTKPVSMAPYRISASEL---KKQLEDLLEKKF 550
GT P+ PYR+ ASEL KKQ+++ L+K +
Sbjct: 584 GTAPIHKRPYRMGASELAEVKKQVDEQLQKGY 615
>ref|NP_908336.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|52353682|gb|AAU44248.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|52353613|gb|AAU44179.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20804440|dbj|BAB92137.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|15128451|dbj|BAB62635.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 239 bits (609), Expect = 2e-61
Identities = 177/572 (30%), Positives = 271/572 (46%), Gaps = 61/572 (10%)
Query: 14 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 73
Q QA QQ N+ G+ L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQQQAQLQQQNLQFGSPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQC 129
Query: 74 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 133
E++KV F THQL A WW + T GA +TW FR F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVT-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKRE 188
Query: 134 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 193
F L+QG +V EY +F L+++ P +AE R KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNLLARYAPEDVRTDAE--RQEKFLSGLDDELTNQLISRDYED 246
Query: 194 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP-----KPYSAPADKGKQKMVDVR--R 246
F+ LV+ EE H +N ++ Q P KP G + +R R
Sbjct: 247 FEKLVDKAIRQEE----HCNKINRKRKAAQFRTPQGKSQKPRFTMGRHGGPSTMIIRQHR 302
Query: 247 PKKKDAAEIVCFNCGEKG---HKSNACPEEIK------------KCVRCGKKGHVVADCN 291
P + N H N P +K + R G+K
Sbjct: 303 PYHPGSFNKNHHNGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE------ 356
Query: 292 RTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPL 348
+CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP
Sbjct: 357 ----LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPA 412
Query: 349 VAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDF 408
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 413 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIF 471
Query: 409 EMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERD 468
+L+ L +DVILGM+WL + +I+C S+++ ++ + E + T Q +
Sbjct: 472 PANLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSLVPRKP 526
Query: 469 GILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLVP 521
GI SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLVP
Sbjct: 527 GI---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVP 583
Query: 522 GTKPVSMAPYRISASEL---KKQLEDLLEKKF 550
GT P+ PYR+ ASEL KKQ+++ L+K +
Sbjct: 584 GTAPIHKRPYRMGASELAEVKKQVDEQLQKGY 615
>ref|XP_463281.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1455
Score = 237 bits (604), Expect = 9e-61
Identities = 174/572 (30%), Positives = 272/572 (47%), Gaps = 61/572 (10%)
Query: 14 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 73
Q QA QQ N+ G L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQQQAQQQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHTIEKKLNLLQC 129
Query: 74 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 133
E++KV F THQL A WW + T GA +TW F F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVT-RPTGAEVTWTEFCHSFNKAQVPEGIVAQKKRE 188
Query: 134 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 193
F L+QG +V EY +F L+++ P +AE R KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDAE--RQEKFLSGLDDELINQLISRDYED 246
Query: 194 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP-----KPYSAPADKGKQKMVDVRR-- 246
F+ LV+ EE H VN ++ Q P KP S G + +R+
Sbjct: 247 FEKLVDKAIRQEE----HCNKVNRKRKAAQFRTPQGKSQKPRSTMGHHGGPSAMIIRQYR 302
Query: 247 ---PKKKDAAEIVCFNCGEKGHKSNACPEEIK------------KCVRCGKKGHVVADCN 291
P + + + H N P +K + R G+K
Sbjct: 303 PYHPGSFNKNHHSGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE------ 356
Query: 292 RTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPL 348
+CFNCN GH +C++P+RA RV + + ++ +I GT +N+TP
Sbjct: 357 ----LCFNCNKPGHTVGKCSKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPA 412
Query: 349 VAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDF 408
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 413 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIF 471
Query: 409 EMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERD 468
+L+ L +DVILGM+WL + +I+C S+++ ++ + E + T Q ++
Sbjct: 472 PANLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGE-----VVTFQSPVPQKP 526
Query: 469 GILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLVP 521
I SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLVP
Sbjct: 527 RI---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVP 583
Query: 522 GTKPVSMAPYRISASEL---KKQLEDLLEKKF 550
GT P+ PYR+ A+EL KKQ+++ L+K +
Sbjct: 584 GTAPIHKRPYRMGANELAEVKKQVDEQLQKGY 615
>ref|XP_493959.1| Similar to Sorghum bicolor 22 kDa kafirin cluster; polyprotein.
(AF061282) [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 236 bits (603), Expect = 1e-60
Identities = 172/572 (30%), Positives = 269/572 (46%), Gaps = 61/572 (10%)
Query: 14 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 73
Q QA QQ N+ G L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQRQAQQQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQC 129
Query: 74 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 133
E++KV F THQL A WW + T GA +TW FR F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASVWWDNYMVT-RPAGAEVTWTEFRHSFNKAQVPEGIVAQKKRE 188
Query: 134 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 193
F L+QG +V EY +F L+++ P +AE KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNLLARYAPEDVRTDAEKQE--KFMSGLDDELTNQLISRDYED 246
Query: 194 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP-----KPYSAPADKGKQKMVDVRR-- 246
F+ LV+ EE H +N ++ Q P KP G + +R+
Sbjct: 247 FEKLVDKAIRQEE----HCNKINRKRKAAQFRTPQGKSQKPRFTMGHHGGPSTMIIRQHR 302
Query: 247 ---PKKKDAAEIVCFNCGEKGHKSNACPEEIK------------KCVRCGKKGHVVADCN 291
P + + + H N P +K + R G+K
Sbjct: 303 PYHPGNFNKNHHNGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE------ 356
Query: 292 RTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPL 348
+CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP
Sbjct: 357 ----LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPA 412
Query: 349 VAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDF 408
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 413 VILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIF 471
Query: 409 EMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERD 468
+L+ L +DVILGM+WL + +I+C S+++ ++ + E T Q +
Sbjct: 472 PANLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEE-----VTFQSLVPRKP 526
Query: 469 GILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLVP 521
G+ SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLVP
Sbjct: 527 GV---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVP 583
Query: 522 GTKPVSMAPYRISASEL---KKQLEDLLEKKF 550
GT P+ PYR+ A+EL KKQ+++ L+K +
Sbjct: 584 GTAPIHKRPYRMGANELAEVKKQVDEQLQKGY 615
>ref|XP_474155.1| OSJNBa0060D06.14 [Oryza sativa (japonica cultivar-group)]
gi|38345904|emb|CAE03548.2| OSJNBa0060D06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1458
Score = 235 bits (600), Expect = 3e-60
Identities = 175/573 (30%), Positives = 268/573 (46%), Gaps = 63/573 (10%)
Query: 14 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 73
Q QA QQ N+ G L F++ PPTF +P A WL IE+ ++QY
Sbjct: 70 QVQQQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQY 129
Query: 74 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 133
E++KV F THQL A WW + T GA +TW F F + E + +K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVTR-PTGAEVTWTEFCHSFNKAQVPEGIVAQKKRE 188
Query: 134 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 193
F L+QG +V EY +F L+ + P +AE R KF +GL ++ + +
Sbjct: 189 FRSLQQGTRTVIEYLHEFNRLAHYAPEDVRTDAE--RQEKFLSGLDDELTNQLVSRDYED 246
Query: 194 FQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRP------KPYSAPADKGKQKMVDVRR- 246
F+ LV+ EE RK K Q R KP G + +R+
Sbjct: 247 FEKLVDKAIRQEEQCNKM-----NRKRKAAQFRTPQGKCQKPRFTMGHHGGPSTMIIRQH 301
Query: 247 ----PKKKDAAEIVCFNCGEKGHKSNACPEEIK------------KCVRCGKKGHVVADC 290
P + + K H N P +K + R G+K +
Sbjct: 302 RPYHPGNFNKNHHSDSHNNSKQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPEL---- 357
Query: 291 NRTDIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTP 347
CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP
Sbjct: 358 ------CFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTP 411
Query: 348 LVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRD 407
V + D+GATH FI+ A GL L + M V TP G +TT+ C + + G
Sbjct: 412 AVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLI 470
Query: 408 FEMDLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLER 467
F +L+ L +DVILGM+WL + +I+C S+++ ++ + E + Q ++
Sbjct: 471 FPANLILLESKDLDVILGMDWLARHRGVIDCASRTIKLTNAKGE-----VVIFQSPVPQK 525
Query: 468 DGILMFSLMATLSIENQAVIDR-------LPVVCDFPEVFPDEIPDVPPEREVEFSIDLV 520
GI SL E + +++ +P+V ++PEVFPD++ +PP+R++EF IDLV
Sbjct: 526 PGI---SLNQAAGEEQEVAVEKTTKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLV 582
Query: 521 PGTKPVSMAPYRISASEL---KKQLEDLLEKKF 550
PGT P+ PYR+ A+EL KKQ+++ L+K +
Sbjct: 583 PGTAPIHKRPYRMGANELAEVKKQVDEQLQKGY 615
>gb|AAP53008.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532838|ref|NP_920721.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16905208|gb|AAL31078.1| putative polyprotein [Oryza
sativa]
Length = 1524
Score = 234 bits (598), Expect = 5e-60
Identities = 173/568 (30%), Positives = 268/568 (46%), Gaps = 53/568 (9%)
Query: 14 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 73
Q QA QQ N G L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QVQQQAQQQQQNPQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQC 129
Query: 74 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 133
E++KV F THQL A WW + T GA +TW FR F + E + G+K+ E
Sbjct: 130 NEQEKVAFATHQLQGPASIWWDNYMVT-RPTGAEVTWTEFRHSFNKAQVPEGIVGQKKRE 188
Query: 134 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 193
F L+QG +V EY +F L+++ P +AE KF +GL ++ + +
Sbjct: 189 FRSLQQGTKTVIEYLHEFNRLARYAPEDVRTDAEKQE--KFMSGLDDELTNQLISRDYED 246
Query: 194 FQDLVNSCRIYEED---TKAHYKVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRR---- 246
F+ LV+ EE K R +G+ +P+ Y+ G M+ +R+
Sbjct: 247 FEKLVDKAIRQEEQCNKMNRKRKAAQFRTPQGKCQKPR-YTMGRHGGPSTMI-IRQHRPY 304
Query: 247 -PKKKDAAEIVCFNCGEKGHKSNACPEEIK------------KCVRCGKKGHVVADCNRT 293
P + + + H N P +K + R G+K
Sbjct: 305 HPGSFNKTHHSDSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE-------- 356
Query: 294 DIVCFNCNGEGHISSQCTQPKRAP---TTGRVFALTGTQTENEDRLIRGTCYINNTPLVA 350
+CFNCN GH +C +P+RA RV + + ++ +I GT +N+TP V
Sbjct: 357 --LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVI 414
Query: 351 IIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEM 410
+ D+GATH FI+ A GL L + M V TP G +TT+ C + + G F
Sbjct: 415 LFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPG-GGMTTTHYCPSVTVEIQGLIFPA 473
Query: 411 DLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEE-----SGAEFLSTKQLKQL 465
+L+ L +DVILGM+WL + +I+C S+++ ++ + E S L Q
Sbjct: 474 NLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEVVIFQSPVPQKPGISLNQA 533
Query: 466 ERDGILMFSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKP 525
+G + T +E+ +P+V ++PEVFPD++ +PP+R++EF IDLVPGT
Sbjct: 534 AGEGQEVAVEKTTKKLED------IPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAS 587
Query: 526 VSMAPYRISASEL---KKQLEDLLEKKF 550
+ PYR+ ASEL KKQ+++ L+K +
Sbjct: 588 IHKRPYRMGASELAEVKKQVDEQLQKGY 615
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 234 bits (598), Expect = 5e-60
Identities = 165/561 (29%), Positives = 267/561 (47%), Gaps = 54/561 (9%)
Query: 16 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 72
V QA QQ N N N L F++ PPTF +P A WL +E+ ++Q
Sbjct: 300 VQQAQNQQAN-NQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 358
Query: 73 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 132
TE++KV F +HQL A +WW EG +TW F F + + V K+
Sbjct: 359 CTEQEKVSFASHQLHGPAAEWWDHFRQGRA-EGEPITWQEFTAAFRKTHIPSGVVALKKR 417
Query: 133 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 192
EF L QG+ SVTEY F L+++ P + E R KF GL ++ A+ R
Sbjct: 418 EFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEE--RQEKFLEGLNDELSYALMSTDFR 475
Query: 193 VFQDLVNSCRIYEEDTKAHYKVVNERKGK-----GQQSRPKPYSAPADKGKQK--MVDVR 245
FQ LV+ I +ED + R + G RP+ + P + V
Sbjct: 476 DFQQLVDKA-IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVV 534
Query: 246 RPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVA-DCNRTDIVCFNCNGEG 304
RP+++ F ++ N + + + V + ++CFNC G
Sbjct: 535 RPQRQ-------FYNNNTSNRGNDNRNVVARPAATSAQNQPVRKEQGSKPVICFNCGDPG 587
Query: 305 HISSQCTQPKR-----APTTGRVFA-------LTGTQTENEDRLIRGTCYINNTPLVAII 352
H + +C +P+R AP V A + + +N ++ GT +N+ P +
Sbjct: 588 HYADKCPKPRRVKNAPAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLF 647
Query: 353 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDL 412
D+GATH F++ S G+++ + ++V TP V ++ C + + F L
Sbjct: 648 DSGATHSFLSKSFTSNHGMEVISLERPLLVNTPGN-QVFSTQYCPSATIEIEEVPFPSSL 706
Query: 413 VCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILM 472
+ L +DVILGM+WL + +I+C ++ V +S E+ + F+S+ + G+++
Sbjct: 707 ILLESKDLDVILGMDWLSCHRGVIDCANRKVTLTSSNGETVSFFMSSPK-----SHGVIL 761
Query: 473 FSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYR 532
NQ + +P+V D+P+VFP+++P +PP+RE+EF IDLVPGT P+ PYR
Sbjct: 762 ----------NQVALQEIPIVQDYPDVFPEDLPGMPPKREIEFRIDLVPGTNPIHKRPYR 811
Query: 533 ISASEL---KKQLEDLLEKKF 550
++A+EL K+Q+EDLL+K +
Sbjct: 812 MAANELVEVKRQVEDLLQKGY 832
>gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1640
Score = 233 bits (593), Expect = 2e-59
Identities = 167/560 (29%), Positives = 270/560 (47%), Gaps = 54/560 (9%)
Query: 16 VAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTE 75
V QA QQ N + L F++ P TF +P A WL +E+ ++Q TE
Sbjct: 355 VQQAQNQQGNNHNQLPPPQNKLADFLRVRPATFSSTTNPVEAGIWLHAVEKKLDLIQCTE 414
Query: 76 EQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFL 135
++KV F +HQL A +WW EG +TW F F + + V K+ EF
Sbjct: 415 QEKVSFASHQLHGPAAEWWDHFRQNRA-EGDPITWQEFTAAFKKTHIPLGVVALKKREFR 473
Query: 136 ELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQ 195
L QG+ SVTEY F L+++ P + E R KF GL ++ A+ + FQ
Sbjct: 474 ALNQGSHSVTEYLHDFNHLARYAPEDVLTDEE--RQEKFLEGLNDELSYALMSTDYQDFQ 531
Query: 196 DLVNSCRIYEEDTKAHYKVVNERKGK-----GQQSRPK----PYSAPADKGKQKMVDVRR 246
LV+ I +ED + R + G RP+ P +AP +G V R
Sbjct: 532 QLVDKA-IRQEDKYNRMEQKKRRAAQFKAQQGSSQRPRIALGPQAAPYPQGG--FSSVTR 588
Query: 247 PKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDI-VCFNCNGEGH 305
P+++ F G++SN + + V + + + + VCFNC GH
Sbjct: 589 PQRQ-------FYNNNTGNRSNDNRNVVARPVAAPTQNQPIRKEQGSKLGVCFNCGDPGH 641
Query: 306 ISSQCTQP---KRAPTTG---------RVFALTGTQTENEDRLIRGTCYINNTPLVAIID 353
+ +C +P K AP RV + + +N ++ GT +N+ P + D
Sbjct: 642 YADKCPKPRCVKNAPVQNNSNAPAPKARVNHVAVAEAQNAPDVVLGTFPVNSIPAFVLFD 701
Query: 354 TGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLV 413
+GATH F++ S G+++ + ++V TP V+++ C + + F L+
Sbjct: 702 SGATHSFLSKSFASNHGMEVISLGRPLLVNTPGN-QVSSTQYCPSVTIEIEEIPFPSSLI 760
Query: 414 CLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMF 473
L +DVILGM+WL + +I+C ++ V +S E+ + F+S+ + L
Sbjct: 761 LLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFFVSSPKSHGL-------- 812
Query: 474 SLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRI 533
TL NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ PYR+
Sbjct: 813 ----TL---NQVALQEIPIVRDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRM 865
Query: 534 SASEL---KKQLEDLLEKKF 550
+A+EL K+Q++DLL+K +
Sbjct: 866 AANELAEVKRQVDDLLQKGY 885
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 233 bits (593), Expect = 2e-59
Identities = 167/561 (29%), Positives = 266/561 (46%), Gaps = 54/561 (9%)
Query: 16 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 72
V QA QQ N N N L F++ PPTF +P A WL +E+ ++Q
Sbjct: 40 VQQAQNQQGN-NQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 98
Query: 73 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 132
TE++KV F +HQL A +WW EG +TW F F + + V K+
Sbjct: 99 CTEQEKVSFASHQLHGPAAEWWDHFRQGRA-EGEPITWQEFTAAFKKTHIPTGVVALKKR 157
Query: 133 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 192
EF L QG+ SVTEY F L+ + P + E R KF GL ++ A+ R
Sbjct: 158 EFRALNQGSRSVTEYLHDFNRLAHYAPEDVRTDEE--RQEKFLEGLNDELSYALMSTDFR 215
Query: 193 VFQDLVNSCRIYEEDTKAHYKVVNERKGK-----GQQSRPKPYSAPADKGKQK--MVDVR 245
FQ LV+ I +ED + R + G RP+ + P D + V
Sbjct: 216 DFQQLVDKA-IRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLITGPQDPSYPQGGSSSVV 274
Query: 246 RPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVA-DCNRTDIVCFNCNGEG 304
RP+++ F G++ N + + + V + VCFNC G
Sbjct: 275 RPQRQ-------FYNNNTGNRGNDNRNMVARPAATPAQNQPVRKEQGSKPGVCFNCGDPG 327
Query: 305 HISSQCTQPKR-----APTTG-------RVFALTGTQTENEDRLIRGTCYINNTPLVAII 352
H + +C +P+R AP RV + + +N ++ GT +N+ P +
Sbjct: 328 HYADKCPKPRRVKNAPAPNNSNAPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPASVLF 387
Query: 353 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDL 412
D+GATH F++ S G+++ + ++V TP V ++ C + + F L
Sbjct: 388 DSGATHSFLSKSFASNYGMEVISLGRHLLVNTPGN-QVFSTQYCPSATIEIEEVPFPSSL 446
Query: 413 VCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILM 472
+ L +DVILGM+WL + +I+C + V +S E+ + F+S+ + G+++
Sbjct: 447 ILLESKDLDVILGMDWLSRHRGVIDCANCKVTLTSSNGETVSFFVSSPKYH-----GVIL 501
Query: 473 FSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYR 532
NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ PYR
Sbjct: 502 ----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIDKRPYR 551
Query: 533 ISASEL---KKQLEDLLEKKF 550
++A+EL K+Q+EDLL+K +
Sbjct: 552 MAANELAEVKRQVEDLLQKGY 572
Score = 40.4 bits (93), Expect = 0.17
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 257 CFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQC 310
C CGE GH +++C CV C ++ H C + I CF C G H+ C
Sbjct: 2184 CSRCGEIGHVASSC---ATICVHC-EEDHPPDRCPTSRITCFFCEGTDHVPKDC 2233
Score = 38.1 bits (87), Expect = 0.84
Identities = 16/46 (34%), Positives = 23/46 (49%)
Query: 292 RTDIVCFNCNGEGHISSQCTQPKRAPTTGRVFALTGTQTENEDRLI 337
R DI CFNC G GH + +C +P+ + V A Q R++
Sbjct: 2287 REDICCFNCQGMGHFADKCPKPRNIAASTSVHATPCNQKLAPQRIV 2332
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 232 bits (591), Expect = 3e-59
Identities = 164/563 (29%), Positives = 265/563 (46%), Gaps = 58/563 (10%)
Query: 16 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 72
V QA QQ N N N L F++ PPTF +P A WL +E+ ++Q
Sbjct: 40 VQQAQNQQAN-NQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 98
Query: 73 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 132
TE++KV F +HQL A +WW G +TW F F + + V K+
Sbjct: 99 CTEQEKVSFASHQLHGPAAEWWDHFRQGRAG-GEPITWQEFTAAFKKTHIPSGVVALKKR 157
Query: 133 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 192
EF L QG+ SVTEY F L+++ P + E R KF GL ++ A+ R
Sbjct: 158 EFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEE--RQEKFLEGLNDELSYALMATDFR 215
Query: 193 VFQDLVNSCRIYEEDTKAHYKVVNERKGK--------GQQSRPKPYSAPADKGKQK--MV 242
FQ LV+ I +ED Y + ++K + G RP+ + P +
Sbjct: 216 DFQQLVDKA-IRQEDK---YNRIEQKKRRAAQFKAQQGSNQRPRLITGPQAPSYPQGGSS 271
Query: 243 DVRRPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNG 302
V RP+++ N G ACP + V + ++CFNC
Sbjct: 272 SVARPQRQFYNNNTS-NRGNDNRNMVACPAATPV-----QNQPVRKEQGSKPVICFNCGD 325
Query: 303 EGHISSQCTQPKRAPTT------------GRVFALTGTQTENEDRLIRGTCYINNTPLVA 350
GH + +C +P+R RV + + +N ++ GT +N+ P
Sbjct: 326 PGHYADKCPKPRRVKNAPVPNNPNVPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATV 385
Query: 351 IIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEM 410
+ D+GATH F++ S G+++ + ++V TP V ++ C + + F
Sbjct: 386 LFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGN-QVFSTQYCPSVTIEIEEVPFPS 444
Query: 411 DLVCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGI 470
L+ L +DVILGM+WL + +I+C ++ V ++ E+ + F S+ + G+
Sbjct: 445 SLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVSFFASSPK-----SHGV 499
Query: 471 LMFSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAP 530
++ NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ P
Sbjct: 500 VL----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRP 549
Query: 531 YRISASEL---KKQLEDLLEKKF 550
YR++A+EL KKQ++DLL+K +
Sbjct: 550 YRMAANELAEVKKQVDDLLQKGY 572
>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar-group)]
gi|50922727|ref|XP_471724.1| OSJNBa0023J03.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1827
Score = 232 bits (591), Expect = 3e-59
Identities = 160/548 (29%), Positives = 264/548 (47%), Gaps = 31/548 (5%)
Query: 22 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 81
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 383 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 442
Query: 82 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 141
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 443 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 501
Query: 142 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 201
M+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 502 MTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 559
Query: 202 RIYEEDTKAHY----KVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 257
I +ED + K R +G Q RP+ P +G + VR+ + +++
Sbjct: 560 -IRQEDQRNKMDRKRKAAQFRSNQGSQHRPR--FTPGQQGGPTTMIVRQHRPFNSSNFHQ 616
Query: 258 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 312
G + H+ A P + + + CFNC GH + +C +
Sbjct: 617 GTSGSQNHQGGQPNRGAAPRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCPK 676
Query: 313 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 369
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 677 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMY 736
Query: 370 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 429
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 737 GLRKDELSTPMRVRTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 795
Query: 430 EYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSIE----NQA 485
+I+C S++V ++ + E+ + S KQ G+ + + + ++ N
Sbjct: 796 TKFKGVIDCASRTVTLTNEKGET-VVYKSPDSPKQ----GVSLNQIETEIPVDTVGKNLR 850
Query: 486 VIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQL 542
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ+
Sbjct: 851 KLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 910
Query: 543 EDLLEKKF 550
++ L+K +
Sbjct: 911 DEQLQKGY 918
>gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532182|ref|NP_920393.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|23266283|gb|AAN16322.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1796
Score = 229 bits (584), Expect = 2e-58
Identities = 160/550 (29%), Positives = 265/550 (48%), Gaps = 35/550 (6%)
Query: 22 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 81
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 352 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 411
Query: 82 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 141
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 412 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 470
Query: 142 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 201
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 471 RTVTEYLQEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 528
Query: 202 RIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 257
I +ED + K+ +RK Q S +P P +G + VR+ + +++
Sbjct: 529 -IRQEDQRN--KMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQ 585
Query: 258 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 312
+ G + H A P + G + CFNC GH + +C +
Sbjct: 586 GSSGSQNHHGGQPNRGAAPRPPMAPAQSGPSAQAKKETGAKPGSCFNCGELGHFADKCPK 645
Query: 313 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 369
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 646 PRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMY 705
Query: 370 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 429
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 706 GLRKEELSTPMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 764
Query: 430 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQLKQLERDGILMFSLMATLSIE----N 483
+I+C +++V ++ + E+ +S KQ G+ + + A + ++ N
Sbjct: 765 TKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKQ-------GVSLNQIEAEIPVDTVEKN 817
Query: 484 QAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KK 540
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KK
Sbjct: 818 LRKLEDIPIVCEYPEVFPEDLTIMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKK 877
Query: 541 QLEDLLEKKF 550
Q+++ L+K +
Sbjct: 878 QVDEQLQKGY 887
>gb|AAP52470.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531762|ref|NP_920183.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|21321760|gb|AAM47295.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657020|gb|AAL78107.1| Putative polyprotein [Oryza
sativa]
Length = 1819
Score = 229 bits (584), Expect = 2e-58
Identities = 162/548 (29%), Positives = 263/548 (47%), Gaps = 31/548 (5%)
Query: 22 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 81
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 375 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 434
Query: 82 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 141
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 435 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 493
Query: 142 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 201
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 494 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 551
Query: 202 RIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 257
I +ED + K+ +RK Q S +P P +G + VR+ + + +
Sbjct: 552 -IRQEDQRN--KMDRKRKAAQFRAHQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQ 608
Query: 258 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 312
G + H A P + G+ + CFNC GH + +C +
Sbjct: 609 GTSGSQNHHGGQPNRGAAPRPPMAPAQSGQPTQAKKETGAKPGSCFNCGELGHFADKCPK 668
Query: 313 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 369
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 669 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMH 728
Query: 370 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 429
GL +++ M V TP S + + + F +L+ L G+DVILGM+WL
Sbjct: 729 GLIREELSTPMRVHTPGNSSTSVQF-SPSITIEIQRSPFLANLILLDSKGLDVILGMDWL 787
Query: 430 EYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSIE----NQA 485
+I+C +++V ++ E G E + K L R G+ + + + ++ N
Sbjct: 788 TKFKGVIDCANRTV---TLTNEKG-ETVVYKSLVS-PRKGVSLNQIETEIPVDTVEKNSR 842
Query: 486 VIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQL 542
+D +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ+
Sbjct: 843 KLDDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 902
Query: 543 EDLLEKKF 550
++ L+K +
Sbjct: 903 DEQLQKGY 910
>gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica]
Length = 1521
Score = 228 bits (582), Expect = 3e-58
Identities = 165/557 (29%), Positives = 269/557 (47%), Gaps = 34/557 (6%)
Query: 14 QAVAQAVGQQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQY 73
Q + Q V QQ + G L F++ PPTF +P A WL IE+ ++Q
Sbjct: 70 QRMMQHVEQQ-HQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQC 128
Query: 74 TEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIE 133
+++KV F THQL A WW + T G +TWA F R F + + V +K+ E
Sbjct: 129 NDQEKVAFATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKRE 187
Query: 134 FLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRV 193
F L QGN +VTEY +F L+++ P +AE KF GL ++ +
Sbjct: 188 FRALHQGNRTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYAD 245
Query: 194 FQDLVNSCRIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKK 249
F+ LV+ I +ED + K+ +RK Q S +P P +G + VR+ +
Sbjct: 246 FERLVDKA-IRQEDQRN--KMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRP 302
Query: 250 KDAAEIVCFNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEG 304
+++ + G + H + A P + G+ + CFNC G
Sbjct: 303 FNSSNFHQGSSGSQNHHGSQPNRGAAPRPPMAPAQSGQPAQAKKETGVKPGSCFNCGELG 362
Query: 305 HISSQCTQPKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFI 361
H + +C +P+RA RV + + + ++ GT +N+ P + D+GATH FI
Sbjct: 363 HFADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFI 422
Query: 362 AFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMD 421
+ V GL ++ M V TP S + S + + F +L+ L +D
Sbjct: 423 SKKFVGMYGLRKEELRTPMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLD 481
Query: 422 VILGMNWLEYNHVLINCFSKSVHFSSVEEESGAE--FLSTKQ---LKQLERDGILMFSLM 476
VILGM+WL +I+C +++V ++ + E+ +S KQ L Q+E + +
Sbjct: 482 VILGMDWLTKFKGVIDCANRTVTLTNEKGETVVHKSLVSPKQGASLNQIEAE------IP 535
Query: 477 ATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISAS 536
+N ++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+
Sbjct: 536 VDTMEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAAN 595
Query: 537 EL---KKQLEDLLEKKF 550
EL KKQ+++ L+K +
Sbjct: 596 ELAEVKKQVDEQLQKGY 612
>ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultivar-group)]
gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1447
Score = 228 bits (581), Expect = 4e-58
Identities = 165/561 (29%), Positives = 268/561 (47%), Gaps = 54/561 (9%)
Query: 16 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 72
V QA QQ N N N L F++ PPTF +P A WL +E+ ++Q
Sbjct: 36 VQQAQNQQAN-NQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 94
Query: 73 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 132
TE++KV F +HQL A +WW EG +TW F F + + V K+
Sbjct: 95 CTEQEKVSFASHQLHGPAAEWWDHFRQGRA-EGEPITWQEFTAAFKKTHIPAGVVALKKR 153
Query: 133 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 192
EF L QG+ SVTEY F L+++ P + E R KF GL ++ A+
Sbjct: 154 EFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEE--RQEKFLEGLNDELSYALMSTDFW 211
Query: 193 VFQDLVNSCRIYEED--TKAHYKVVNERKGKGQQS---RPKPYSAPADKGKQK--MVDVR 245
FQ LV+ I +ED + K+ + K QQ RP+ + P + V
Sbjct: 212 DFQQLVDKA-IRQEDKYNRMEQKMRRAAQFKAQQGSNQRPRLVTGPQAPSYSQGGSSSVI 270
Query: 246 RPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVA-DCNRTDIVCFNCNGEG 304
RP+++ F G++ N + + + V + +VCFNC G
Sbjct: 271 RPQRQ-------FYNNNTGNRGNDNRNMVARPAATSAQNQPVRREQGSKPVVCFNCGDPG 323
Query: 305 HISSQCTQPKR-----APTTGRVFA-------LTGTQTENEDRLIRGTCYINNTPLVAII 352
H + +C +P+R AP V A + + +N ++ GT +N+ P +
Sbjct: 324 HYADKCPKPRRVKNALAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLF 383
Query: 353 DTGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDL 412
D+GATH F++ S G+++ + ++V TP V ++ C + + F L
Sbjct: 384 DSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGN-QVFSTQYCPSATIEIEEVPFPSSL 442
Query: 413 VCLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILM 472
+ L +DVILGM+WL + +I+C ++ V +S E+ + F+ + + G+ +
Sbjct: 443 ILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFFVFSPK-----SHGVNL 497
Query: 473 FSLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYR 532
NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ PYR
Sbjct: 498 ----------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYR 547
Query: 533 ISASEL---KKQLEDLLEKKF 550
++A+EL K+Q++DLL+K +
Sbjct: 548 MAANELAEVKRQVDDLLQKGY 568
>ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultivar-group)]
gi|38347272|emb|CAE05319.2| OSJNBa0056L23.17 [Oryza
sativa (japonica cultivar-group)]
Length = 963
Score = 228 bits (581), Expect = 4e-58
Identities = 163/560 (29%), Positives = 268/560 (47%), Gaps = 52/560 (9%)
Query: 16 VAQAVGQQPNVNAGANAEA---RMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQ 72
V QA QQ N N N L F++ +PPTF +P A WL +E+ ++Q
Sbjct: 204 VQQAQNQQAN-NQNQNPPPPPQNKLADFLRVSPPTFSSTTNPVEAGDWLHAVEKKLDLIQ 262
Query: 73 YTEEQKVRFGTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEI 132
TE++KV F +HQL A +WW G +TW F F + + V K+
Sbjct: 263 CTEQEKVSFASHQLHGPAAEWWDHFRQGRAG-GEPITWQEFTTAFKKTHIPTGVVALKKR 321
Query: 133 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLR 192
EF L QG+ SVTEY F L+++ P + E R KF GL ++ A+ R
Sbjct: 322 EFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEE--RQEKFLEGLNDELSYALMSTDFR 379
Query: 193 VFQDLVNSCRIYEEDTKAHYKVVNERKGK-----GQQSRPKPYSAPADKGKQK--MVDVR 245
FQ LV+ I +ED + R + G RP+ + P + V
Sbjct: 380 DFQQLVDKA-IRQEDKYNRMEQKKRRAAQFKSQQGSNQRPRLVTGPQVPSYPQGGSSSVV 438
Query: 246 RPKKKDAAEIVCFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGH 305
RP++ + N G +G+ + + + + V + ++CFNC GH
Sbjct: 439 RPQR----QFYNNNTGNRGNDNRSVVA--RPAATPVQNQPVRKEQGSKPVICFNCGDPGH 492
Query: 306 ISSQCTQPKR-----APTTG-------RVFALTGTQTENEDRLIRGTCYINNTPLVAIID 353
+ +C +P+R AP RV + + +N ++ GT +N+ P + D
Sbjct: 493 YADKCPKPRRVKNAPAPNNSSAPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFD 552
Query: 354 TGATHCFIAFDCVSALGLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLV 413
+GATH F++ S G+++ + ++V TP V ++ C + + F L+
Sbjct: 553 SGATHSFLSKSFASNHGIEVISLGRPLLVNTPGN-QVFSTQYCPSVTIEIEEVLFPSSLI 611
Query: 414 CLPLSGMDVILGMNWLEYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMF 473
L +DVILGM+WL + +I+C ++ V ++ E+ + F S+ + G+++
Sbjct: 612 LLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVSFFASSPK-----SHGVVL- 665
Query: 474 SLMATLSIENQAVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRI 533
NQ + +P+V D+P+VFP+++P +PP+R++EF IDLVPGT P+ PYR+
Sbjct: 666 ---------NQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRM 716
Query: 534 SASEL---KKQLEDLLEKKF 550
+A+EL KKQ++DLL+K +
Sbjct: 717 AANELAEVKKQVDDLLQKGY 736
>ref|NP_914275.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1521
Score = 228 bits (581), Expect = 4e-58
Identities = 160/549 (29%), Positives = 261/549 (47%), Gaps = 33/549 (6%)
Query: 22 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 81
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 77 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 136
Query: 82 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 141
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 137 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 195
Query: 142 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 201
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 196 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 253
Query: 202 RIYEEDTKAHY----KVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 257
I +ED + K R +G Q RP+ P +G + VR+ + + +
Sbjct: 254 -IRQEDQRNKMDRKRKAAQFRSNQGSQHRPR--FTPGQQGGPTTMIVRQHRPFNPSNFHQ 310
Query: 258 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 312
G + H A P + G+ + CFNC GH + +C +
Sbjct: 311 GTSGSQNHHGGQPNRGAAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPK 370
Query: 313 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 369
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 371 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMH 430
Query: 370 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 429
GL +++ M V TP S + + + F +L+ L +DVILGM+WL
Sbjct: 431 GLIREELSTPMRVHTPGNSSTSVQF-SPSITIEIQRSPFLANLILLESKDLDVILGMDWL 489
Query: 430 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQ---LKQLERDGILMFSLMATLSIENQ 484
+I+C S++V ++ + E+ +S K+ L Q+E + + +N
Sbjct: 490 TKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGASLNQIETE------IPVDTEEKNL 543
Query: 485 AVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQ 541
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ
Sbjct: 544 RKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQ 603
Query: 542 LEDLLEKKF 550
+++ L+K +
Sbjct: 604 VDEQLQKGY 612
>ref|NP_908773.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1521
Score = 228 bits (580), Expect = 6e-58
Identities = 158/548 (28%), Positives = 262/548 (46%), Gaps = 31/548 (5%)
Query: 22 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 81
+Q + G L F++ PPTF +P WL IE+ ++Q +++KV F
Sbjct: 77 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEVNDWLHAIEKKLNLLQCNDQEKVAF 136
Query: 82 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 141
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 137 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 195
Query: 142 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 201
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 196 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 253
Query: 202 RIYEEDTKAHY----KVVNERKGKGQQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 257
I +ED + K R +G Q RP+ P +G + VR+ + +++
Sbjct: 254 -IRQEDQRNKMDRKRKAAQFRSNQGSQHRPR--FTPGQQGGPTTMIVRQHRPFNSSNFHQ 310
Query: 258 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 312
G + H+ A P + + + CFNC GH + +C +
Sbjct: 311 GTSGSQNHQGGQPNRGAAPRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCPK 370
Query: 313 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 369
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 371 PRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMY 430
Query: 370 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 429
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 431 GLRKEELSTPMRVRTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 489
Query: 430 EYNHVLINCFSKSVHFSSVEEESGAEFLSTKQLKQLERDGILMFSLMATLSIE----NQA 485
+I+C S++V ++ + E+ + S KQ G+ + + + ++ N
Sbjct: 490 TKFKGVIDCASRTVTLTNEKGET-VVYKSPGSPKQ----GVSLNQIETEIPVDTVGKNLR 544
Query: 486 VIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQL 542
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ+
Sbjct: 545 KLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 604
Query: 543 EDLLEKKF 550
++ L+K +
Sbjct: 605 DEQLQKGY 612
>gb|AAP52880.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532582|ref|NP_920593.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|15217199|gb|AAK92543.1| Putative retroelement [Oryza
sativa]
Length = 1773
Score = 227 bits (579), Expect = 7e-58
Identities = 160/549 (29%), Positives = 263/549 (47%), Gaps = 33/549 (6%)
Query: 22 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 81
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 333 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 392
Query: 82 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 141
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 393 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 451
Query: 142 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 201
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 452 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 509
Query: 202 RIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 257
I +ED + K+ +RK Q S +P P +G + VR+ + + +
Sbjct: 510 -IRQEDQRN--KIDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQ 566
Query: 258 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 312
G + H A P + G+ + CFNC GH + +C +
Sbjct: 567 GTSGSQNHHGGQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPK 626
Query: 313 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 369
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 627 PRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRY 686
Query: 370 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 429
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 687 GLRKEELSTPMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 745
Query: 430 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQ---LKQLERDGILMFSLMATLSIENQ 484
+I+C +++V ++ + E+ +S K+ L Q+E + + +N
Sbjct: 746 TKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGVSLNQIETE------IPVDTVEKNL 799
Query: 485 AVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQ 541
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ
Sbjct: 800 RKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQ 859
Query: 542 LEDLLEKKF 550
+++ L+K +
Sbjct: 860 VDEQLQKGY 868
>gb|AAM74400.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1300
Score = 227 bits (579), Expect = 7e-58
Identities = 160/549 (29%), Positives = 263/549 (47%), Gaps = 33/549 (6%)
Query: 22 QQPNVNAGANAEARMLETFMKKNPPTFKGRYDPDGAQTWLKEIERIFRVMQYTEEQKVRF 81
+Q + G L F++ PPTF +P A WL IE+ ++Q +++KV F
Sbjct: 333 EQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAF 392
Query: 82 GTHQLAEEADDWWVALLPTLGQEGAVMTWAVFRREFLRRYFLEDVRGKKEIEFLELKQGN 141
THQL A WW + T G +TWA F R F + + V +K+ EF L QGN
Sbjct: 393 ATHQLQGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGN 451
Query: 142 MSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRLDIKRAIGYQQLRVFQDLVNSC 201
+VTEY +F L+++ P +AE KF GL ++ + F+ LV+
Sbjct: 452 RTVTEYLHEFNRLARYAPEDVRTDAEKQE--KFMAGLDDELTNQLISGDYADFERLVDKA 509
Query: 202 RIYEEDTKAHYKVVNERKGKG----QQSRPKPYSAPADKGKQKMVDVRRPKKKDAAEIVC 257
I +ED + K+ +RK Q S +P P +G + VR+ + + +
Sbjct: 510 -IRQEDQRN--KIDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQ 566
Query: 258 FNCGEKGHKSN-----ACPEEIKKCVRCGKKGHVVADCNRTDIVCFNCNGEGHISSQCTQ 312
G + H A P + G+ + CFNC GH + +C +
Sbjct: 567 GTSGSQNHHGGQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPK 626
Query: 313 PKRAPTT---GRVFALTGTQTENEDRLIRGTCYINNTPLVAIIDTGATHCFIAFDCVSAL 369
P+RA RV + + + ++ GT +N+ P + D+GATH FI+ V
Sbjct: 627 PRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRY 686
Query: 370 GLDLSDMNGEMVVETPAKGSVTTSLVCLKCPLSMFGRDFEMDLVCLPLSGMDVILGMNWL 429
GL +++ M V TP S + S + + F +L+ L +DVILGM+WL
Sbjct: 687 GLRKEELSTPMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWL 745
Query: 430 EYNHVLINCFSKSVHFSSVEEESGA--EFLSTKQ---LKQLERDGILMFSLMATLSIENQ 484
+I+C +++V ++ + E+ +S K+ L Q+E + + +N
Sbjct: 746 TKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGVSLNQIETE------IPVDTVEKNL 799
Query: 485 AVIDRLPVVCDFPEVFPDEIPDVPPEREVEFSIDLVPGTKPVSMAPYRISASEL---KKQ 541
++ +P+VC++PEVFP+++ +PP+RE+EF IDL PGT P+ PYR++A+EL KKQ
Sbjct: 800 RKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQ 859
Query: 542 LEDLLEKKF 550
+++ L+K +
Sbjct: 860 VDEQLQKGY 868
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,013,929,872
Number of Sequences: 2540612
Number of extensions: 42861696
Number of successful extensions: 138176
Number of sequences better than 10.0: 4697
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 3886
Number of HSP's that attempted gapping in prelim test: 115301
Number of HSP's gapped (non-prelim): 17558
length of query: 615
length of database: 863,360,394
effective HSP length: 134
effective length of query: 481
effective length of database: 522,918,386
effective search space: 251523743666
effective search space used: 251523743666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)
Medicago: description of AC146333.2