BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146332.3 - phase: 0
(281 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL36341.1| putative CCR4-associated factor [Arabidopsis thal... 317 2e-85
emb|CAB88994.1| CCR4-associated factor 1-like protein [Arabidops... 308 9e-83
ref|XP_468264.1| putative CCR4-NOT transcription complex subunit... 241 2e-62
ref|XP_507027.1| PREDICTED OJ1695_H09.27-1 gene product [Oryza s... 241 2e-62
dbj|BAD29264.1| putative CCR4-NOT transcription complex subunit ... 239 5e-62
gb|AAM20381.1| putative CCR4-associated factor [Arabidopsis thal... 239 6e-62
ref|XP_474415.1| OSJNBa0088H09.11 [Oryza sativa (japonica cultiv... 232 8e-60
gb|AAN13153.1| putative CCR4-associated factor [Arabidopsis thal... 232 8e-60
gb|AAM45088.1| putative BTG1 binding factor 1 [Arabidopsis thali... 230 3e-59
ref|XP_507586.1| PREDICTED P0524F03.33 gene product [Oryza sativ... 224 2e-57
emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like protein [Arabidopsis... 224 2e-57
gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thal... 223 5e-57
ref|XP_623444.1| PREDICTED: similar to GA19054-PA [Apis mellifera] 214 3e-54
pir||F84728 probable CCR4-associated factor [imported] - Arabido... 214 3e-54
gb|AAD02685.1| CCR4-associated factor 1 [Homo sapiens] 210 4e-53
emb|CAG31834.1| hypothetical protein [Gallus gallus] 207 2e-52
gb|EAK83463.1| hypothetical protein UM02425.1 [Ustilago maydis 5... 207 2e-52
gb|AAH17366.1| CNOT8 protein [Homo sapiens] gi|30582553|gb|AAP35... 207 4e-52
ref|NP_081225.1| CCR4-NOT transcription complex, subunit 8 [Mus ... 207 4e-52
gb|AAP36213.1| Homo sapiens CCR4-NOT transcription complex, subu... 207 4e-52
>gb|AAL36341.1| putative CCR4-associated factor [Arabidopsis thaliana]
gi|9757805|dbj|BAB08323.1| CCR4-associated factor-like
protein [Arabidopsis thaliana]
gi|15242180|ref|NP_197617.1| CCR4-NOT transcription
complex protein, putative [Arabidopsis thaliana]
gi|25054979|gb|AAN71961.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 278
Score = 317 bits (813), Expect = 2e-85
Identities = 167/282 (59%), Positives = 206/282 (72%), Gaps = 12/282 (4%)
Query: 4 VKEEDASNKPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAPNFDPNIPYH 63
+K E + I IR VWA NLE EFDLIR V +P++SMDTEFPGV+ + D
Sbjct: 2 IKSEADLSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDV----- 56
Query: 64 LRHMDPSEQYSFLKANVDNLNLIQLGLTLTDANGNLP---GDVAYSYIWEFNFKDFDVDR 120
LR +P+ Y+ LK+NVD L+LIQ+GLTL+DA+GNLP G YIWEFNF+DFDV+R
Sbjct: 57 LRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVER 116
Query: 121 DLQNPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLV-NSGVSWVTFHSSYDFGY 179
D PDSIELLRR GIDF+RN GV+S FA+L + SGL+ N VSWVTFHS+YDFGY
Sbjct: 117 DPHAPDSIELLRRHGIDFERNRREGVESERFAELM-MSSGLICNESVSWVTFHSAYDFGY 175
Query: 180 LVKILTQNYLPSRLEEFLSILTQIFGQNVYDMKYMIKFC--NLYGGLERVATKLKVSRAV 237
LVKILT+ LP L EFL +L FG VYD+K++++FC LYGGL+RVA L+V+RAV
Sbjct: 176 LVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAV 235
Query: 238 GNSHQAASDSLLTWQAFKKMKDIYFVNNGITMHAGVLFGLEV 279
G HQA SDSLLTWQAF++M+D+YFV +G HAGVL+GLEV
Sbjct: 236 GKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277
>emb|CAB88994.1| CCR4-associated factor 1-like protein [Arabidopsis thaliana]
gi|21436313|gb|AAM51295.1| putative CCR4-associated
factor 1 [Arabidopsis thaliana]
gi|15292829|gb|AAK92783.1| putative CCR4-associated
factor 1 [Arabidopsis thaliana]
gi|15229916|ref|NP_190012.1| CCR4-NOT transcription
complex protein, putative [Arabidopsis thaliana]
gi|11288396|pir||T49142 CCR4-associated factor 1-like
protein - Arabidopsis thaliana
Length = 280
Score = 308 bits (790), Expect = 9e-83
Identities = 159/269 (59%), Positives = 201/269 (74%), Gaps = 15/269 (5%)
Query: 17 RQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAPNFDPNIPYHLRHMDPSEQYSFL 76
R+VWAENLE EF+LI + + +P++SMDTEFPGV+ + LR +P + Y+ L
Sbjct: 20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSD--------LRFTNPDDLYTLL 71
Query: 77 KANVDNLNLIQLGLTLTDANGNLPG---DVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
KANVD L+LIQ+GLTL+D NGNLP D+ +IWEFNF+DFDV RD PDSIELLRR
Sbjct: 72 KANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRR 131
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLV-NSGVSWVTFHSSYDFGYLVKILTQNYLPSR 192
QGIDF+RN GV+S FA+L + SGLV N VSWVTFHS+YDFGYL+KILT+ LP
Sbjct: 132 QGIDFERNCRDGVESERFAELM-MSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 190
Query: 193 LEEFLSILTQIFGQNVYDMKYMIKFC--NLYGGLERVATKLKVSRAVGNSHQAASDSLLT 250
L EF ++ +FG+ VYD+K+M+KFC L+GGL+RVA L+V+RAVG HQA SDSLLT
Sbjct: 191 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 250
Query: 251 WQAFKKMKDIYFVNNGITMHAGVLFGLEV 279
W AF++M+D+YFV +G HAGVL+GLEV
Sbjct: 251 WHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279
>ref|XP_468264.1| putative CCR4-NOT transcription complex subunit 7 [Oryza sativa
(japonica cultivar-group)] gi|47497237|dbj|BAD19282.1|
putative CCR4-NOT transcription complex subunit 7 [Oryza
sativa (japonica cultivar-group)]
gi|47497028|dbj|BAD19081.1| putative CCR4-NOT
transcription complex subunit 7 [Oryza sativa (japonica
cultivar-group)]
Length = 293
Score = 241 bits (614), Expect = 2e-62
Identities = 136/269 (50%), Positives = 177/269 (65%), Gaps = 13/269 (4%)
Query: 12 KPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAPNFDPNIPYHLRHMDPSE 71
+P++IR+VWA+NLE EF LIRD V FP+V+MDTEFPG+V P P
Sbjct: 26 EPVEIREVWADNLEEEFALIRDVVDEFPFVAMDTEFPGIVCRPVGAFRSP-------ADY 78
Query: 72 QYSFLKANVDNLNLIQLGLTLTDANGNLP--GDVAYSYIWEFNFKDFDVDRDLQNPDSIE 129
Y+ LKANVD L+LIQLGLT + G LP G +W+FNF++FD RD+ DSIE
Sbjct: 79 NYATLKANVDMLHLIQLGLTFSSPRGELPALGPGRRRCVWQFNFREFDDARDIFASDSIE 138
Query: 130 LLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYL 189
LLRR GIDF+RN GVD+ FA+L ++N V WVTFH+ YDFGYL+KILT + L
Sbjct: 139 LLRRSGIDFRRNSERGVDARRFAELLMSSGVVLNDSVYWVTFHAGYDFGYLLKILTCSSL 198
Query: 190 PSRLEEFLSILTQIFGQNVYDMKYMIKFCN-LYGGLERVATKLKVSRAVGNSHQAASDSL 248
P F ++ +I+ VYD+K+++KFCN L+GGL ++A L V R VG SHQA SDSL
Sbjct: 199 PDTQAGFFKLM-KIYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGESHQAGSDSL 256
Query: 249 LTWQAFKKMKDIYFVNNGITMHAGVLFGL 277
+T AF K+KD +F + +AGVL+GL
Sbjct: 257 VTSCAFWKLKDSFFAGS-TEKYAGVLYGL 284
>ref|XP_507027.1| PREDICTED OJ1695_H09.27-1 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 295
Score = 241 bits (614), Expect = 2e-62
Identities = 136/269 (50%), Positives = 177/269 (65%), Gaps = 13/269 (4%)
Query: 12 KPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAPNFDPNIPYHLRHMDPSE 71
+P++IR+VWA+NLE EF LIRD V FP+V+MDTEFPG+V P P
Sbjct: 28 EPVEIREVWADNLEEEFALIRDVVDEFPFVAMDTEFPGIVCRPVGAFRSP-------ADY 80
Query: 72 QYSFLKANVDNLNLIQLGLTLTDANGNLP--GDVAYSYIWEFNFKDFDVDRDLQNPDSIE 129
Y+ LKANVD L+LIQLGLT + G LP G +W+FNF++FD RD+ DSIE
Sbjct: 81 NYATLKANVDMLHLIQLGLTFSSPRGELPALGPGRRRCVWQFNFREFDDARDIFASDSIE 140
Query: 130 LLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYL 189
LLRR GIDF+RN GVD+ FA+L ++N V WVTFH+ YDFGYL+KILT + L
Sbjct: 141 LLRRSGIDFRRNSERGVDARRFAELLMSSGVVLNDSVYWVTFHAGYDFGYLLKILTCSSL 200
Query: 190 PSRLEEFLSILTQIFGQNVYDMKYMIKFCN-LYGGLERVATKLKVSRAVGNSHQAASDSL 248
P F ++ +I+ VYD+K+++KFCN L+GGL ++A L V R VG SHQA SDSL
Sbjct: 201 PDTQAGFFKLM-KIYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGESHQAGSDSL 258
Query: 249 LTWQAFKKMKDIYFVNNGITMHAGVLFGL 277
+T AF K+KD +F + +AGVL+GL
Sbjct: 259 VTSCAFWKLKDSFFAGS-TEKYAGVLYGL 286
>dbj|BAD29264.1| putative CCR4-NOT transcription complex subunit 7 [Oryza sativa
(japonica cultivar-group)] gi|50251550|dbj|BAD28924.1|
putative CCR4-NOT transcription complex subunit 7 [Oryza
sativa (japonica cultivar-group)]
Length = 280
Score = 239 bits (611), Expect = 5e-62
Identities = 138/277 (49%), Positives = 183/277 (65%), Gaps = 21/277 (7%)
Query: 9 ASNKP--IKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHL 64
A+ KP ++IR+VW +NLE EF +IR+ V FPYV+MDTEFPGVV P F N ++
Sbjct: 5 AAEKPDGVEIREVWEDNLEAEFAVIREIVDDFPYVAMDTEFPGVVCRPLGTFKSNADFN- 63
Query: 65 RHMDPSEQYSFLKANVDNLNLIQLGLTLTDANGNLP--GDVAYSYIWEFNFKDFDVDRDL 122
Y+ LKANVD L LIQLGLT ++ +G LP G +W+FNF+ FD D+
Sbjct: 64 --------YATLKANVDMLKLIQLGLTFSNEHGGLPSLGPEGRPCVWQFNFRGFDPRTDV 115
Query: 123 QNPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVK 182
DSI+LLRR GIDF R+ G D+ FA+L ++NS V WVTFHS YDFGYL+K
Sbjct: 116 AAADSIDLLRRSGIDFTRHSADGADARRFAELLMSSGVVMNSEVRWVTFHSGYDFGYLLK 175
Query: 183 ILTQNYLPSRLEEFLSILTQIFGQNVYDMKYMIKFCN-LYGGLERVATKLKVSRAVGNSH 241
+LT YLP + F ++ +I+ VYD+K++++FCN L+GGL ++A L V R VG H
Sbjct: 176 LLTGTYLPDTITGFFDLI-RIYFPVVYDIKHLMRFCNSLHGGLNKLAELLDVER-VGICH 233
Query: 242 QAASDSLLTWQAFKKMKDIYFVNNGIT-MHAGVLFGL 277
QA SDSLLT +FKK+K+ YF NG+T +AGVL+GL
Sbjct: 234 QAGSDSLLTALSFKKLKEAYF--NGLTEKYAGVLYGL 268
>gb|AAM20381.1| putative CCR4-associated factor [Arabidopsis thaliana]
gi|17979381|gb|AAL49916.1| putative CCR4-associated
factorCCR4-associated factor [Arabidopsis thaliana]
gi|15220828|ref|NP_178193.1| CCR4-NOT transcription
complex protein, putative [Arabidopsis thaliana]
gi|30699538|ref|NP_849915.1| CCR4-NOT transcription
complex protein, putative [Arabidopsis thaliana]
gi|6503290|gb|AAF14666.1| Similar to gb|U21855
CCR4-associated factor 1 (CAF1) from Mus musculus. ESTs
gb|AAA394972, gb|AA585812 and gb|H77015 come from this
gene. [Arabidopsis thaliana] gi|25363292|pir||D96840
hypothetical protein F23A5.13 [imported] - Arabidopsis
thaliana
Length = 274
Score = 239 bits (610), Expect = 6e-62
Identities = 132/270 (48%), Positives = 178/270 (65%), Gaps = 16/270 (5%)
Query: 14 IKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSE 71
I+IR+VW +NL+ E DLIRD V FPYV+MDTEFPG+VV P F N YH
Sbjct: 10 IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYH-------- 61
Query: 72 QYSFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSY-IWEFNFKDFDVDRDLQNPDSIEL 130
Y LK NV+ L +IQLGLT ++ GNLP Y IW+FNF++FD+D D+ DSIEL
Sbjct: 62 -YETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120
Query: 131 LRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLP 190
L++ GID +N + G+DS FA+L ++N V WVTFHS YDFGYL+K+LT LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180
Query: 191 SRLEEFLSILTQIFGQNVYDMKYMIKFCN-LYGGLERVATKLKVSRAVGNSHQAASDSLL 249
+F ++ ++ VYD+K+++KFCN L+GGL ++A L+V R VG HQA SDSLL
Sbjct: 181 DSQTDFFKLI-NVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLL 238
Query: 250 TWQAFKKMKDIYFVNNGITMHAGVLFGLEV 279
T F+K+K+ +FV + ++GVL+GL V
Sbjct: 239 TSCTFRKLKENFFV-GPLHKYSGVLYGLGV 267
>ref|XP_474415.1| OSJNBa0088H09.11 [Oryza sativa (japonica cultivar-group)]
gi|32488710|emb|CAE03453.1| OSJNBa0088H09.11 [Oryza
sativa (japonica cultivar-group)]
Length = 329
Score = 232 bits (592), Expect = 8e-60
Identities = 124/271 (45%), Positives = 172/271 (62%), Gaps = 16/271 (5%)
Query: 13 PIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAPNFDPNIPYHLRHMDPSEQ 72
P++IR+VWA N+E EF +IR+ + FPYVSMDTEFPGV+ P P + + ++
Sbjct: 53 PVEIRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPAL------LTAGDR 106
Query: 73 YSFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLR 132
Y L+ NVD L+LIQ+G+TL + P + +E N DFD +S++LL
Sbjct: 107 YDLLRRNVDALHLIQVGITLAASPTAAP-----ALAFEINLSDFDQRVHRHAAESVQLLA 161
Query: 133 RQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNS--GVSWVTFHSSYDFGYLVKILTQNYLP 190
G+D + +GV + A L + SGLV S V WVTFHS+YDF YLVK+L LP
Sbjct: 162 EHGVDLAAHRRHGVRASALAPLL-MSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLP 220
Query: 191 SRLEEFLSILTQIFGQNVYDMKYMIKFCN--LYGGLERVATKLKVSRAVGNSHQAASDSL 248
+ EFL+++ FG VYD+K+M++ C LYGGLERVA L+V RA G HQAASDSL
Sbjct: 221 RSMAEFLNLVRVFFGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSL 280
Query: 249 LTWQAFKKMKDIYFVNNGITMHAGVLFGLEV 279
LTW F++M+++YF+ +G+ + GVLFGLE+
Sbjct: 281 LTWDVFRRMRELYFLKHGVEAYQGVLFGLEL 311
>gb|AAN13153.1| putative CCR4-associated factor [Arabidopsis thaliana]
gi|15293025|gb|AAK93623.1| putative CCR4-associated
factor [Arabidopsis thaliana] gi|20197620|gb|AAD15397.2|
putative CCR4-associated factor [Arabidopsis thaliana]
gi|18402869|ref|NP_565735.1| CCR4-NOT transcription
complex protein, putative [Arabidopsis thaliana]
Length = 275
Score = 232 bits (592), Expect = 8e-60
Identities = 129/271 (47%), Positives = 177/271 (64%), Gaps = 17/271 (6%)
Query: 14 IKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSE 71
I+IR+VW +NLE E LIR+ V FP+V+MDTEFPG+V P F N YH
Sbjct: 10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYH-------- 61
Query: 72 QYSFLKANVDNLNLIQLGLTLTDANGNLP--GDVAYSYIWEFNFKDFDVDRDLQNPDSIE 129
Y LK NV+ L +IQLGLT +D GNLP G IW+FNF++FD++ D+ DSIE
Sbjct: 62 -YETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120
Query: 130 LLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYL 189
LLR+ GIDF +N +G+DS FA+L ++N V WVTFHS YDFGYL+K+LT L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180
Query: 190 PSRLEEFLSILTQIFGQNVYDMKYMIKFCN-LYGGLERVATKLKVSRAVGNSHQAASDSL 248
P F +++ ++ VYD+K+++KFCN L+GGL ++A L V R VG HQA SDSL
Sbjct: 181 PETQTGFFEMIS-VYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSL 238
Query: 249 LTWQAFKKMKDIYFVNNGITMHAGVLFGLEV 279
LT F+K+++ +F+ + + ++GVL+GL V
Sbjct: 239 LTSCTFRKLQENFFIGS-MEKYSGVLYGLGV 268
>gb|AAM45088.1| putative BTG1 binding factor 1 [Arabidopsis thaliana]
gi|19347887|gb|AAL86000.1| putative BTG1 binding factor
1 [Arabidopsis thaliana] gi|15218371|ref|NP_173044.1|
CCR4-NOT transcription complex protein, putative
[Arabidopsis thaliana] gi|42571495|ref|NP_973838.1|
CCR4-NOT transcription complex protein, putative
[Arabidopsis thaliana] gi|6587798|gb|AAF18489.1| Similar
to gi|Q60809 CCR4-associated factor 1 (CAF1) from Mus
musculus. EST gb|Z26822 comes from this gene.
[Arabidopsis thaliana] gi|25363303|pir||F86293 T24D18.2
protein - Arabidopsis thaliana
Length = 286
Score = 230 bits (587), Expect = 3e-59
Identities = 132/283 (46%), Positives = 180/283 (62%), Gaps = 12/283 (4%)
Query: 1 MTKVKEEDASNKPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVV---VAPNFD 57
M++ + + I+IR+VW NLE+E LI + FPYV+MDTEFPG+V V N +
Sbjct: 1 MSQAPNPEEEDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPN 60
Query: 58 PNIPYHLRHMDPSEQYSFLKANVDNLNLIQLGLTLTDANGNLPG-DVAYSYIWEFNFKDF 116
PN PY + + Y LKANV+ L LIQLGLTL+D GNLP IW+FNF++F
Sbjct: 61 PN-PYSIHY---EYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREF 116
Query: 117 DVDRDLQNPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYD 176
+V D+ DSIELLR+ ID ++N GVD+ FA+L ++N + WVTFH YD
Sbjct: 117 NVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYD 176
Query: 177 FGYLVKILTQNYLPSRLEEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSR 235
FGYL+K+L+ LP + +F + + F VYD+KY++ FC NLYGGLE++A L V R
Sbjct: 177 FGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR 235
Query: 236 AVGNSHQAASDSLLTWQAFKKMKDIYFVNNGITMHAGVLFGLE 278
VG SHQA SDSLLT + F KMK+ +F + + ++G LFGL+
Sbjct: 236 -VGISHQAGSDSLLTLRTFIKMKEFFFTGS-LLKYSGFLFGLD 276
>ref|XP_507586.1| PREDICTED P0524F03.33 gene product [Oryza sativa (japonica
cultivar-group)] gi|50946169|ref|XP_482612.1| putative
CCR4-NOT transcription complex, subunit 7 [Oryza sativa
(japonica cultivar-group)] gi|51964916|ref|XP_507242.1|
PREDICTED P0524F03.33 gene product [Oryza sativa
(japonica cultivar-group)] gi|42408685|dbj|BAD09904.1|
putative CCR4-NOT transcription complex, subunit 7
[Oryza sativa (japonica cultivar-group)]
gi|42408670|dbj|BAD09890.1| putative CCR4-NOT
transcription complex, subunit 7 [Oryza sativa (japonica
cultivar-group)]
Length = 288
Score = 224 bits (572), Expect = 2e-57
Identities = 125/277 (45%), Positives = 174/277 (62%), Gaps = 17/277 (6%)
Query: 8 DASNKPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLR 65
++ ++ ++IR+VWA NLE E IRD V +PYV+MDTEFPG+V P NF ++
Sbjct: 10 ESPDEGVEIREVWAGNLEAEIAAIRDEVDRYPYVAMDTEFPGIVCRPVGNFRTTDEFN-- 67
Query: 66 HMDPSEQYSFLKANVDNLNLIQLGLTLTDANGNLP--GDVAYSYIWEFNFKDFDVDRDLQ 123
Y+ L+ANV+ L LIQLGLTL+D G+LP G IW+FNF+ FD D
Sbjct: 68 -------YANLEANVNMLKLIQLGLTLSDEGGDLPRRGTGGRRCIWQFNFRGFDPRTDPS 120
Query: 124 NPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKI 183
N DSI++LR GIDF R G D + FA+L ++N+ V W+TFHS YDFGYL+++
Sbjct: 121 NADSIQMLRTCGIDFDRFAAEGADPIRFAELLMSSGVVLNADVQWITFHSGYDFGYLLRL 180
Query: 184 LTQNYLPSRLEEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQ 242
LT LP + F ++ +I+ +YD+K++++FC NL+GGL R+ L V R VG HQ
Sbjct: 181 LTGRNLPDNMPAFFDLI-RIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKR-VGTCHQ 238
Query: 243 AASDSLLTWQAFKKMKDIYFVNNGITMHAGVLFGLEV 279
A SDSLLT + K+K++YF HAGVL+GL +
Sbjct: 239 AGSDSLLTLGCYNKIKEVYF-KGSTEKHAGVLYGLVI 274
>emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like protein [Arabidopsis thaliana]
gi|23296319|gb|AAN13040.1| putative CCR4-associated
factor [Arabidopsis thaliana]
gi|15238907|ref|NP_196657.1| CCR4-NOT transcription
complex protein, putative [Arabidopsis thaliana]
gi|11288398|pir||T50805 CCR4-ASSOCIATED FACTOR-like
protein - Arabidopsis thaliana
Length = 277
Score = 224 bits (572), Expect = 2e-57
Identities = 131/287 (45%), Positives = 178/287 (61%), Gaps = 28/287 (9%)
Query: 1 MTKVKEEDASNKPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP------ 54
M + +ED+ I IR+VW NL EF LIR+ V F Y++MDTEFPGVV+ P
Sbjct: 1 MAETLKEDS----IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKY 56
Query: 55 NFDPNIPYHLRHMDPSEQYSFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSY-IWEFNF 113
N D N Y LK NVD L LIQ+GLT +D NGNLP + IW+FNF
Sbjct: 57 NNDLN-------------YRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNF 103
Query: 114 KDFDVDRDLQNPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHS 173
++F++ D+ +SIELLR+ GIDFK+N+ G+D + F +L ++N +SWVTFH
Sbjct: 104 REFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHG 163
Query: 174 SYDFGYLVKILTQNYLPSRLEEFLSILTQIFGQNVYDMKYMIKFCN-LYGGLERVATKLK 232
YDFGYLVK+LT LP + +F +L ++ VYD+K+++ FCN L+GGL R+A +
Sbjct: 164 GYDFGYLVKLLTCKELPLKQADFFKLL-YVYFPTVYDIKHLMTFCNGLFGGLNRLAELMG 222
Query: 233 VSRAVGNSHQAASDSLLTWQAFKKMKDIYFVNNGITMHAGVLFGLEV 279
V R VG HQA SDSLLT +F+K+K+ YF + + GVL+GL V
Sbjct: 223 VER-VGICHQAGSDSLLTLGSFRKLKERYFPGS-TEKYTGVLYGLGV 267
>gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thaliana]
Length = 277
Score = 223 bits (568), Expect = 5e-57
Identities = 131/287 (45%), Positives = 177/287 (61%), Gaps = 28/287 (9%)
Query: 1 MTKVKEEDASNKPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP------ 54
M + +ED+ I IR+VW NL EF LIR+ V F Y++MDTEFPGVV+ P
Sbjct: 1 MAETLKEDS----IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKY 56
Query: 55 NFDPNIPYHLRHMDPSEQYSFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSY-IWEFNF 113
N D N Y LK NVD L LIQ+GLT +D NGNLP + IW+FNF
Sbjct: 57 NNDLN-------------YRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNF 103
Query: 114 KDFDVDRDLQNPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHS 173
++F++ D+ +SIELLR+ GIDFK+N+ G+D + F +L ++N +SWVTFH
Sbjct: 104 REFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHG 163
Query: 174 SYDFGYLVKILTQNYLPSRLEEFLSILTQIFGQNVYDMKYMIKFCN-LYGGLERVATKLK 232
YDFGYLVK+LT LP + +F +L ++ VYD+K+++ FCN L+GGL R+A +
Sbjct: 164 GYDFGYLVKLLTCKELPLKQADFFKLL-YVYFPTVYDIKHLMTFCNGLFGGLNRLAELMG 222
Query: 233 VSRAVGNSHQAASDSLLTWQAFKKMKDIYFVNNGITMHAGVLFGLEV 279
V R VG HQA SDSLLT +F+K K+ YF + + GVL+GL V
Sbjct: 223 VER-VGICHQAGSDSLLTLGSFRKPKERYFPGS-TEKYTGVLYGLGV 267
>ref|XP_623444.1| PREDICTED: similar to GA19054-PA [Apis mellifera]
Length = 302
Score = 214 bits (544), Expect = 3e-54
Identities = 122/273 (44%), Positives = 167/273 (60%), Gaps = 20/273 (7%)
Query: 10 SNKPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHM 67
SN+ IR VW NLE EF IR V + Y++MDTEFPGVV P F + Y
Sbjct: 22 SNEECGIRDVWGHNLEEEFRTIRQVVQQYQYIAMDTEFPGVVARPIGEFRTSADY----- 76
Query: 68 DPSEQYSFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYI-WEFNFKDFDVDRDLQNPD 126
QY L+ NVD L +IQLGLT D +GN PG SY W+FNFK F++ D+ D
Sbjct: 77 ----QYQLLRCNVDLLRIIQLGLTFLDESGNTPGG---SYTTWQFNFK-FNLQEDMYAQD 128
Query: 127 SIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQ 186
SI++L+ GI FK++ G+D L+FA+L ++ + W++FHS YDFGYL+K+LT
Sbjct: 129 SIDMLQNSGIQFKKHEEEGIDPLDFAELLMTSGIVLVDDIKWLSFHSGYDFGYLLKLLTD 188
Query: 187 NYLPSRLEEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAAS 245
LP EF +L +I+ +YD+KY++K C NL GGL+ VA +L++ R VG HQA S
Sbjct: 189 QNLPQEESEFFELL-RIYFPTIYDVKYLMKSCKNLKGGLQEVAEQLEIQR-VGPQHQAGS 246
Query: 246 DSLLTWQAFKKMKDIYFVNN-GITMHAGVLFGL 277
DSLLT F KM++++F +N + G L+GL
Sbjct: 247 DSLLTGMVFFKMREMFFEDNIDDAKYCGHLYGL 279
>pir||F84728 probable CCR4-associated factor [imported] - Arabidopsis thaliana
Length = 252
Score = 214 bits (544), Expect = 3e-54
Identities = 120/255 (47%), Positives = 165/255 (64%), Gaps = 17/255 (6%)
Query: 30 LIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQYSFLKANVDNLNLIQ 87
LIR+ V FP+V+MDTEFPG+V P F N YH Y LK NV+ L +IQ
Sbjct: 3 LIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYH---------YETLKTNVNILKMIQ 53
Query: 88 LGLTLTDANGNLP--GDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRRQGIDFKRNLIYG 145
LGLT +D GNLP G IW+FNF++FD++ D+ DSIELLR+ GIDF +N +G
Sbjct: 54 LGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFG 113
Query: 146 VDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRLEEFLSILTQIFG 205
+DS FA+L ++N V WVTFHS YDFGYL+K+LT LP F +++ ++
Sbjct: 114 IDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMIS-VYF 172
Query: 206 QNVYDMKYMIKFCN-LYGGLERVATKLKVSRAVGNSHQAASDSLLTWQAFKKMKDIYFVN 264
VYD+K+++KFCN L+GGL ++A L V R VG HQA SDSLLT F+K+++ +F+
Sbjct: 173 PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKLQENFFIG 231
Query: 265 NGITMHAGVLFGLEV 279
+ + ++GVL+GL V
Sbjct: 232 S-MEKYSGVLYGLGV 245
>gb|AAD02685.1| CCR4-associated factor 1 [Homo sapiens]
Length = 292
Score = 210 bits (534), Expect = 4e-53
Identities = 118/266 (44%), Positives = 166/266 (62%), Gaps = 19/266 (7%)
Query: 16 IRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQY 73
I +VWA NLE E IR+ V + Y++MDTEFPGVVV P F +I Y QY
Sbjct: 12 ICEVWASNLEEEMRKIREIVPSYSYIAMDTEFPGVVVRPIGEFRSSIDY---------QY 62
Query: 74 SFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
L+ NVD L +IQLGLT T+ G P + W+FNFK F++ D+ + DSI+LL
Sbjct: 63 QLLRCNVDLLKIIQLGLTFTNEKGEYPSGIN---TWQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRL 193
G+ F+++ G+D+L FA+L ++ V W++FHS YDFGY+VK+LT + LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 194 EEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTWQ 252
EFL IL +F ++YD+KY++K C NL GGL+ VA +L + R +G HQA SDSLLT
Sbjct: 179 HEFLHIL-NLFSPSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 253 AFKKMKDIYFVNN-GITMHAGVLFGL 277
AF +MK+++F ++ + G L+GL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>emb|CAG31834.1| hypothetical protein [Gallus gallus]
Length = 292
Score = 207 bits (528), Expect = 2e-52
Identities = 117/266 (43%), Positives = 165/266 (61%), Gaps = 19/266 (7%)
Query: 16 IRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQY 73
I +VWA NLE E IR+ V + Y++MDTEFPGVVV P F +I Y QY
Sbjct: 12 ICEVWANNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY---------QY 62
Query: 74 SFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
L+ NVD L +IQLGLT T+ G P + W+FNFK F++ D+ + DSI+LL
Sbjct: 63 QLLRCNVDLLKIIQLGLTFTNEKGEYPSGIN---TWQFNFK-FNLTEDMYSQDSIDLLAS 118
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRL 193
G+ F+++ G+D+L FA+L +++ V W++FHS YDFGY+VK+LT + LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLSDSVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 194 EEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTWQ 252
EF IL +F ++YD+KY++K C NL GGL+ VA +L + R +G HQA SDSLLT
Sbjct: 179 HEFFHIL-NLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 253 AFKKMKDIYFVNN-GITMHAGVLFGL 277
AF +MK+++F + + G L+GL
Sbjct: 237 AFFRMKELFFEDTIDDAKYCGRLYGL 262
>gb|EAK83463.1| hypothetical protein UM02425.1 [Ustilago maydis 521]
gi|49071502|ref|XP_400040.1| hypothetical protein
UM02425.1 [Ustilago maydis 521]
Length = 316
Score = 207 bits (528), Expect = 2e-52
Identities = 118/266 (44%), Positives = 168/266 (62%), Gaps = 19/266 (7%)
Query: 15 KIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQ 72
+IR+VWAENLE E L+RD + +PYV+MDTEFPG+V P F + YH
Sbjct: 4 RIREVWAENLEVEMALLRDTIEKYPYVAMDTEFPGIVARPIGTFKGSSDYH--------- 54
Query: 73 YSFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLR 132
Y L+ NVD L LIQLG+TL D NGNLP DV W+FNF+ F ++ D+ PDS++LL
Sbjct: 55 YQTLRCNVDLLKLIQLGITLCDENGNLPPDVC---TWQFNFR-FSINDDMCAPDSLDLLT 110
Query: 133 RQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSR 192
+ G+DF R+ G+D F +L + V WV+FHS YDFGYL+K++T + LP++
Sbjct: 111 KAGLDFDRHERMGIDVEHFGELLITSGLALFDDVKWVSFHSGYDFGYLLKVVTCSPLPAQ 170
Query: 193 LEEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTW 251
+F ++L +++ +YD+K++++ C L GGL+ VA L+VSR +G HQA SDSLLT
Sbjct: 171 ESDFFALL-RVWFPCIYDIKFLMRSCKTLKGGLQDVADDLQVSR-IGQQHQAGSDSLLTA 228
Query: 252 QAFKKMKDIYFVNN-GITMHAGVLFG 276
F KM+ YF + + + G L+G
Sbjct: 229 TTFFKMRQKYFDGSIDDSKYLGCLYG 254
>gb|AAH17366.1| CNOT8 protein [Homo sapiens] gi|30582553|gb|AAP35503.1| CCR4-NOT
transcription complex, subunit 8 [Homo sapiens]
gi|57085699|ref|XP_546280.1| PREDICTED: similar to
CCR4-NOT transcription complex subunit 8
(CCR4-associated factor 8) (CAF1-like protein) (CALIFp)
(CAF2) [Canis familiaris] gi|61362222|gb|AAX42180.1|
CCR4-NOT transcription complex subunit 8 [synthetic
construct] gi|6093237|emb|CAB59181.1| hypothetical
protein [Homo sapiens] gi|61813325|ref|XP_612851.1|
PREDICTED: similar to CCR4-NOT transcription complex
subunit 8 (CCR4-associated factor 8) (CAF1-like protein)
(CALIFp) (CAF2) [Bos taurus] gi|6856209|gb|AAF29830.1|
CALIFp [Homo sapiens] gi|15213949|sp|Q9UFF9|CNOT8_HUMAN
CCR4-NOT transcription complex subunit 8
(CCR4-associated factor 8) (CAF1-like protein) (CALIFp)
(CAF2) gi|31542315|ref|NP_004770.4| CCR4-NOT
transcription complex, subunit 8 [Homo sapiens]
Length = 292
Score = 207 bits (526), Expect = 4e-52
Identities = 117/266 (43%), Positives = 165/266 (61%), Gaps = 19/266 (7%)
Query: 16 IRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQY 73
I +VWA NLE E IR+ V + Y++MDTEFPGVVV P F +I Y QY
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY---------QY 62
Query: 74 SFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
L+ NVD L +IQLGLT T+ G P + W+FNFK F++ D+ + DSI+LL
Sbjct: 63 QLLRCNVDLLKIIQLGLTFTNEKGEYPSGIN---TWQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRL 193
G+ F+++ G+D+L FA+L ++ V W++FHS YDFGY+VK+LT + LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 194 EEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTWQ 252
EF IL +F ++YD+KY++K C NL GGL+ VA +L + R +G HQA SDSLLT
Sbjct: 179 HEFFHIL-NLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 253 AFKKMKDIYFVNN-GITMHAGVLFGL 277
AF +MK+++F ++ + G L+GL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>ref|NP_081225.1| CCR4-NOT transcription complex, subunit 8 [Mus musculus]
gi|13278480|gb|AAH04040.1| CCR4-NOT transcription
complex, subunit 8 [Mus musculus]
gi|46395973|sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription
complex subunit 8 (CCR4-associated factor 8)
gi|26344525|dbj|BAC35913.1| unnamed protein product [Mus
musculus] gi|12841214|dbj|BAB25119.1| unnamed protein
product [Mus musculus]
Length = 292
Score = 207 bits (526), Expect = 4e-52
Identities = 117/266 (43%), Positives = 165/266 (61%), Gaps = 19/266 (7%)
Query: 16 IRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQY 73
I +VWA NLE E IR+ V + Y++MDTEFPGVVV P F +I Y QY
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY---------QY 62
Query: 74 SFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
L+ NVD L +IQLGLT T+ G P + W+FNFK F++ D+ + DSI+LL
Sbjct: 63 QLLRCNVDLLKIIQLGLTFTNEKGEYPSGIN---TWQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRL 193
G+ F+++ G+D+L FA+L ++ V W++FHS YDFGY+VK+LT + LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 194 EEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTWQ 252
EF IL +F ++YD+KY++K C NL GGL+ VA +L + R +G HQA SDSLLT
Sbjct: 179 HEFFHIL-NLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 253 AFKKMKDIYFVNN-GITMHAGVLFGL 277
AF +MK+++F ++ + G L+GL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>gb|AAP36213.1| Homo sapiens CCR4-NOT transcription complex, subunit 8 [synthetic
construct] gi|60653893|gb|AAX29639.1| CCR4-NOT
transcription complex subunit 8 [synthetic construct]
Length = 293
Score = 207 bits (526), Expect = 4e-52
Identities = 117/266 (43%), Positives = 165/266 (61%), Gaps = 19/266 (7%)
Query: 16 IRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQY 73
I +VWA NLE E IR+ V + Y++MDTEFPGVVV P F +I Y QY
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY---------QY 62
Query: 74 SFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
L+ NVD L +IQLGLT T+ G P + W+FNFK F++ D+ + DSI+LL
Sbjct: 63 QLLRCNVDLLKIIQLGLTFTNEKGEYPSGIN---TWQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRL 193
G+ F+++ G+D+L FA+L ++ V W++FHS YDFGY+VK+LT + LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 194 EEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTWQ 252
EF IL +F ++YD+KY++K C NL GGL+ VA +L + R +G HQA SDSLLT
Sbjct: 179 HEFFHIL-NLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 253 AFKKMKDIYFVNN-GITMHAGVLFGL 277
AF +MK+++F ++ + G L+GL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.140 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,634,360
Number of Sequences: 2540612
Number of extensions: 20100574
Number of successful extensions: 41335
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 40878
Number of HSP's gapped (non-prelim): 147
length of query: 281
length of database: 863,360,394
effective HSP length: 126
effective length of query: 155
effective length of database: 543,243,282
effective search space: 84202708710
effective search space used: 84202708710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)
Medicago: description of AC146332.3