BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146329.10 - phase: 0
(68 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_475902.1| putative ubiquitin-conjugating enzyme [Oryza sa... 56 2e-07
dbj|BAD34060.1| ubiquitin-conjugating enzyme-like protein [Oryza... 54 1e-06
dbj|BAC42437.1| putative ubiquitin-conjugating enzyme [Arabidops... 45 4e-04
ref|NP_175710.1| ubiquitin-conjugating enzyme family protein [Ar... 45 4e-04
gb|AAY44865.1| ubiquitinating enzyme [Arabidopsis thaliana] gi|2... 45 4e-04
gb|AAG52276.1| putative ubiquitin-conjugating enzyme; 121361-120... 45 6e-04
ref|NP_916910.1| putative ubiquitin-conjugating protein [Oryza s... 44 8e-04
gb|AAX91192.1| ORF001 [Bacteriophage 47] gi|66395657|ref|YP_2400... 31 7.4
gb|AAX91113.1| ORF001 [Bacteriophage 42e] gi|18920581|gb|AAL8232... 31 7.4
gb|AAX91046.1| ORF001 [Bacteriophage 3A] gi|66395589|ref|YP_2399... 31 7.4
gb|AAM49603.1| phi12 tail fiber protein-like protein [Staphyloco... 31 7.4
dbj|BAB95255.1| hypothetical protein [Staphylococcus aureus subs... 31 7.4
>ref|XP_475902.1| putative ubiquitin-conjugating enzyme [Oryza sativa (japonica
cultivar-group)] gi|49328017|gb|AAT58718.1| putative
ubiquitin-conjugating enzyme [Oryza sativa (japonica
cultivar-group)]
Length = 509
Score = 56.2 bits (134), Expect = 2e-07
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 1 MVAGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIGS 55
++A AY++GAQVGCLV GVQD+D+GDKS S +F ++L R FT G+
Sbjct: 430 LIACRAYLDGAQVGCLVGNGVQDVDEGDKSCSARFKSALKRLFEELLMEFTVKGA 484
>dbj|BAD34060.1| ubiquitin-conjugating enzyme-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 433
Score = 53.9 bits (128), Expect = 1e-06
Identities = 27/54 (50%), Positives = 32/54 (59%)
Query: 1 MVAGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIG 54
+V AY+ GAQVGCL GVQD+D+GDKS S F SL + FT IG
Sbjct: 354 LVGCKAYMNGAQVGCLAGNGVQDVDEGDKSCSANFKGSLKTLFDELIKEFTRIG 407
>dbj|BAC42437.1| putative ubiquitin-conjugating enzyme [Arabidopsis thaliana]
gi|29028948|gb|AAO64853.1| At1g53020 [Arabidopsis
thaliana]
Length = 543
Score = 45.4 bits (106), Expect = 4e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 3 AGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIG 54
A NAY GA +G +VKGGVQDL++ +S S++F +A + F +G
Sbjct: 459 ACNAYKAGAPLGSMVKGGVQDLEEARQSGSKKFKTDVASFMQTVVDEFVKLG 510
>ref|NP_175710.1| ubiquitin-conjugating enzyme family protein [Arabidopsis thaliana]
Length = 1163
Score = 45.4 bits (106), Expect = 4e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 3 AGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIG 54
A NAY GA +G +VKGGVQDL++ +S S++F +A + F +G
Sbjct: 459 ACNAYKAGAPLGSMVKGGVQDLEEARQSGSKKFKTDVASFMQTVVDEFVKLG 510
Score = 44.7 bits (104), Expect = 6e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 3 AGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIG 54
A NAY GA +G +VKGGVQDL+ +S S++F +A + F +G
Sbjct: 1079 ACNAYKAGAPLGSMVKGGVQDLEQARQSGSKKFKTDVASFMQTVVDEFVKLG 1130
>gb|AAY44865.1| ubiquitinating enzyme [Arabidopsis thaliana]
gi|25405615|pir||G96570 hypothetical protein F8L10.11
[imported] - Arabidopsis thaliana
gi|51970226|dbj|BAD43805.1| putative
ubiquitin-conjugating enzyme [Arabidopsis thaliana]
gi|9454541|gb|AAF87864.1| Similar to
ubiquitin-conjugating enzymes [Arabidopsis thaliana]
Length = 543
Score = 45.4 bits (106), Expect = 4e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 3 AGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIG 54
A NAY GA +G +VKGGVQDL++ +S S++F +A + F +G
Sbjct: 459 ACNAYKAGAPLGSMVKGGVQDLEEARQSGSKKFKTDVASFMQTVVDEFVKLG 510
>gb|AAG52276.1| putative ubiquitin-conjugating enzyme; 121361-120434 [Arabidopsis
thaliana]
Length = 244
Score = 44.7 bits (104), Expect = 6e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 3 AGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIG 54
A NAY GA +G +VKGGVQDL+ +S S++F +A + F +G
Sbjct: 160 ACNAYKAGAPLGSMVKGGVQDLEQARQSGSKKFKTDVASFMQTVVDEFVKLG 211
>ref|NP_916910.1| putative ubiquitin-conjugating protein [Oryza sativa (japonica
cultivar-group)]
Length = 493
Score = 44.3 bits (103), Expect = 8e-04
Identities = 22/54 (40%), Positives = 33/54 (60%), Gaps = 1/54 (1%)
Query: 1 MVAGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIG 54
++ NAY++GAQVG ++ GGV+ +D G+K S +F SL + F GIG
Sbjct: 427 LIGCNAYMDGAQVGSII-GGVKAIDKGNKGCSTKFKGSLKKLFEELMMEFIGIG 479
>gb|AAX91192.1| ORF001 [Bacteriophage 47] gi|66395657|ref|YP_240016.1| ORF001
[Bacteriophage 47]
Length = 2066
Score = 31.2 bits (69), Expect = 7.4
Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Query: 2 VAGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIGSMLVQAP 61
V N+ +EG+Q G ++ L + KS++++ L H++ A F G+G ++ Q
Sbjct: 482 VLSNSGLEGSQAGTALRASFIRLANPSKSTAKEM-KKLGIHLSDAKGEFVGMGELIRQFQ 540
Query: 62 D 62
D
Sbjct: 541 D 541
>gb|AAX91113.1| ORF001 [Bacteriophage 42e] gi|18920581|gb|AAL82321.1| tail fiber
protein [Staphylococcus aureus phage phi 12]
gi|66395509|ref|YP_239871.1| ORF001 [Bacteriophage 42e]
gi|29028657|ref|NP_803346.1| tail fiber protein
[Staphylococcus aureus phage phi 12]
Length = 2066
Score = 31.2 bits (69), Expect = 7.4
Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Query: 2 VAGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIGSMLVQAP 61
V N+ +EG+Q G ++ L + KS++++ L H++ A F G+G ++ Q
Sbjct: 482 VLSNSGLEGSQAGTALRASFIRLANPSKSTAKEM-KKLGIHLSDAKGEFVGMGELIRQFQ 540
Query: 62 D 62
D
Sbjct: 541 D 541
>gb|AAX91046.1| ORF001 [Bacteriophage 3A] gi|66395589|ref|YP_239947.1| ORF001
[Bacteriophage 3A]
Length = 1649
Score = 31.2 bits (69), Expect = 7.4
Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Query: 2 VAGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIGSMLVQAP 61
V N+ +EG+Q G ++ L + KS++++ L H++ A F G+G ++ Q
Sbjct: 482 VLSNSGLEGSQAGTALRASFIRLANPSKSTAKEM-KKLGIHLSDAKGQFVGMGELIRQFQ 540
Query: 62 D 62
D
Sbjct: 541 D 541
>gb|AAM49603.1| phi12 tail fiber protein-like protein [Staphylococcus aureus
bacteriophage phi 3A]
Length = 2066
Score = 31.2 bits (69), Expect = 7.4
Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Query: 2 VAGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIGSMLVQAP 61
V N+ +EG+Q G ++ L + KS++++ L H++ A F G+G ++ Q
Sbjct: 482 VLSNSGLEGSQAGTALRASFIRLANPSKSTAKEM-KKLGIHLSDAKGQFVGMGELIRQFQ 540
Query: 62 D 62
D
Sbjct: 541 D 541
>dbj|BAB95255.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
gi|21283119|ref|NP_646207.1| hypothetical protein MW1390
[Staphylococcus aureus subsp. aureus MW2]
Length = 2066
Score = 31.2 bits (69), Expect = 7.4
Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 1/61 (1%)
Query: 2 VAGNAYIEGAQVGCLVKGGVQDLDDGDKSSSRQFNNSLARHINVAAPNFTGIGSMLVQAP 61
V N+ +EG+Q G ++ L + KS++++ L H++ A F G+G ++ Q
Sbjct: 482 VLSNSGLEGSQAGTALRASFIRLANPSKSTAKEM-KKLGIHLSDAKGEFVGMGELIRQFQ 540
Query: 62 D 62
D
Sbjct: 541 D 541
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,189,411
Number of Sequences: 2540612
Number of extensions: 3466104
Number of successful extensions: 6843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6834
Number of HSP's gapped (non-prelim): 14
length of query: 68
length of database: 863,360,394
effective HSP length: 44
effective length of query: 24
effective length of database: 751,573,466
effective search space: 18037763184
effective search space used: 18037763184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146329.10