BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145222.8 + phase: 0
(209 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 328 8e-89
pir||S00449 photosystem I chain II precursor - tomato gi|131166|... 327 1e-88
emb|CAD89270.1| putative photosystem I reaction centre PSI-D sub... 327 1e-88
dbj|BAA02871.1| PSI-D1 precursor [Nicotiana sylvestris] gi|48704... 322 3e-87
emb|CAA68728.1| unnamed protein product [Spinacia oleracea] 318 8e-86
emb|CAA32182.1| unnamed protein product [Spinacia oleracea] gi|7... 317 1e-85
sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 317 1e-85
emb|CAA42623.1| PSI-D2 [Nicotiana sylvestris] gi|100292|pir||S18... 315 4e-85
emb|CAA54744.1| psaD [Spinacia oleracea] 300 1e-80
ref|XP_483783.1| putative photosystem I reaction center subunit ... 297 1e-79
sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 295 6e-79
gb|AAN38693.1| At1g03130/F10O3_4 [Arabidopsis thaliana] gi|12083... 293 2e-78
gb|AAM66066.1| putative photosystem I reaction center subunit II... 289 3e-77
emb|CAB77762.1| putative photosystem I reaction center subunit I... 288 5e-77
emb|CAB52677.1| photosystem I subunit II precursor [Arabidopsis ... 287 2e-76
gb|AAL73208.1| photosystem I subunit [Chlamydomonas reinhardtii]... 224 2e-57
emb|CAB64901.1| photosystem I reaction centre subunit II precurs... 212 6e-54
gb|AAC35693.1| PSI ferredoxin-binding protein II [Guillardia the... 189 3e-47
ref|YP_063618.1| photosystem I reaction center subunit II [Graci... 189 4e-47
gb|AAC08165.1| Photosystem I reaction centre subunit II [Porphyr... 186 5e-46
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D) (PS I subunit 5)
gi|320209|pir||A60695 photosystem I chain II precursor -
cucumber gi|227772|prf||1710320A photosystem I 20kD
protein
Length = 207
Score = 328 bits (840), Expect = 8e-89
Identities = 166/215 (77%), Positives = 177/215 (82%), Gaps = 14/215 (6%)
Query: 1 MAMATQASLFTPPLSSPK------PWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAAS 54
MAMATQA+LFTP LS+PK PWKQ STLSF++ KP + AA
Sbjct: 1 MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKP--------HLKAASSSRSFKV 52
Query: 55 VTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 114
E + AP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMP
Sbjct: 53 SAEAETSVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 112
Query: 115 TGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 174
TGGAAIMREGPNLLKLARKEQCLALG RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE
Sbjct: 113 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 172
Query: 175 KVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
KVNPGR+GVGQNFRSIGKNVSPIEVKFTGKQ +D+
Sbjct: 173 KVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>pir||S00449 photosystem I chain II precursor - tomato
gi|131166|sp|P12372|PSAD_LYCES Photosystem I reaction
center subunit II, chloroplast precursor (Photosystem I
20 kDa subunit) (PSI-D) gi|170492|gb|AAA34185.1|
photosystem I subunit II protein precursor
gi|226544|prf||1601516A photosystem I reaction center II
Length = 208
Score = 327 bits (839), Expect = 1e-88
Identities = 171/214 (79%), Positives = 182/214 (84%), Gaps = 11/214 (5%)
Query: 1 MAMATQASLFTPPLSSPK----PWKQPSTLSFISLKPIKFTTKTTK-ISAADEKTEAASV 55
MAMATQASLFTPPLS PK PWKQ S +SF + K +K T T+ I A E+ AA+
Sbjct: 1 MAMATQASLFTPPLSVPKSTTAPWKQ-SLVSFSTPKQLKSTVSVTRPIRAMAEEAPAAT- 58
Query: 56 TTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 115
EE PA P GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT
Sbjct: 59 ---EEKPA-PAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPT 114
Query: 116 GGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 175
GGAAIMR+GPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 115 GGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEK 174
Query: 176 VNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
VNPGR+GVGQNFRSIGKN S IEVKFTGKQ +D+
Sbjct: 175 VNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>emb|CAD89270.1| putative photosystem I reaction centre PSI-D subunit precursor
[Solanum tuberosum]
Length = 207
Score = 327 bits (838), Expect = 1e-88
Identities = 172/213 (80%), Positives = 181/213 (84%), Gaps = 10/213 (4%)
Query: 1 MAMATQASLFTPPLSSPK---PWKQPSTLSFISLKPIKFTTKTTK-ISAADEKTEAASVT 56
MAMATQASLFTP LS PK PWKQ S LSF + K +K T T+ I A E+ AA+
Sbjct: 1 MAMATQASLFTPALSVPKSTAPWKQ-SLLSFSTPKQLKSTVSVTRPIRAMAEEAPAAT-- 57
Query: 57 TKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 116
EE PA P GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG
Sbjct: 58 --EEKPA-PAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 114
Query: 117 GAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 176
GAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 115 GAAIMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKV 174
Query: 177 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
NPGR+GVGQNFRSIGKN S IEVKFTGKQ +D+
Sbjct: 175 NPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 207
>dbj|BAA02871.1| PSI-D1 precursor [Nicotiana sylvestris] gi|487046|pir||S37380
photosystem I chain II.D1 precursor - wood tobacco
Length = 214
Score = 322 bits (826), Expect = 3e-87
Identities = 169/218 (77%), Positives = 181/218 (82%), Gaps = 13/218 (5%)
Query: 1 MAMATQASLFTPPLSSPK--------PWKQPSTLSFISLKPIKFTTKTTKISA-ADEKTE 51
MAMA+QASLFTP +S+ K PWKQ S SF + K K I A A EK +
Sbjct: 1 MAMASQASLFTPSISTSKTADPRVVAPWKQ-SASSFSAPKLSKSVVAYRPIKAMAVEKAQ 59
Query: 52 AASVTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIF 111
+A TKE PAAPVGFTPP+LDP+TPSPIFGGSTGGLLRKAQV+EFYVITWESPKEQIF
Sbjct: 60 SA---TKEAEPAAPVGFTPPQLDPSTPSPIFGGSTGGLLRKAQVDEFYVITWESPKEQIF 116
Query: 112 EMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGV 171
EMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI Y+FYRVFPNGEVQYLHPKDGV
Sbjct: 117 EMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGV 176
Query: 172 YPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
YPEKVNPGRQGVGQNFRSIGKN SPIEVKFTGKQ +D+
Sbjct: 177 YPEKVNPGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDI 214
>emb|CAA68728.1| unnamed protein product [Spinacia oleracea]
Length = 212
Score = 318 bits (814), Expect = 8e-86
Identities = 169/218 (77%), Positives = 181/218 (82%), Gaps = 15/218 (6%)
Query: 1 MAMATQASLFTPP-LSSPKP--------WKQPSTLSFISLKPIKFTTKTTKISAADEKTE 51
MAMATQA+LF+P LSS KP +KQPS ++F S KP + + +AA E
Sbjct: 1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-KPAS-RHHSIRAAAAAEGKR 58
Query: 52 AASVTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIF 111
AA+ TKE AP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIF
Sbjct: 59 AAATETKE----APKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIF 114
Query: 112 EMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGV 171
EMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKIKYQFYRVFP+GEVQYLHPKDGV
Sbjct: 115 EMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGV 174
Query: 172 YPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
YPEKVNPGRQGVG N RSIGKNVSPIEVKFTGKQP+D+
Sbjct: 175 YPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>emb|CAA32182.1| unnamed protein product [Spinacia oleracea] gi|72680|pir||A1SP2
photosystem I chain II precursor - spinach
Length = 212
Score = 317 bits (813), Expect = 1e-85
Identities = 170/218 (77%), Positives = 179/218 (81%), Gaps = 15/218 (6%)
Query: 1 MAMATQASLFTPP-LSSPKP--------WKQPSTLSFISLKPIKFTTKTTKISAADEKTE 51
MAMATQA+LF+P LSS KP +KQPS LSF S KP + + +AA E
Sbjct: 1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSALSFAS-KPAS-RHHSIRAAAAAEGKA 58
Query: 52 AASVTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIF 111
A TKE AP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIF
Sbjct: 59 ATPTETKE----APKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIF 114
Query: 112 EMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGV 171
EMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKIKYQFYRVFP+GEVQYLHPKDGV
Sbjct: 115 EMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGV 174
Query: 172 YPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
YPEKVNPGRQGVG N RSIGKNVSPIEVKFTGKQP+D+
Sbjct: 175 YPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D)
Length = 212
Score = 317 bits (813), Expect = 1e-85
Identities = 169/218 (77%), Positives = 181/218 (82%), Gaps = 15/218 (6%)
Query: 1 MAMATQASLFTPP-LSSPKP--------WKQPSTLSFISLKPIKFTTKTTKISAADEKTE 51
MAMATQA+LF+P LSS KP +KQPS ++F S KP + + +AA E
Sbjct: 1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-KPAS-RHHSIRAAAAAEGKA 58
Query: 52 AASVTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIF 111
AA+ TKE AP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIF
Sbjct: 59 AAATETKE----APKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIF 114
Query: 112 EMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGV 171
EMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKIKYQFYRVFP+GEVQYLHPKDGV
Sbjct: 115 EMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGV 174
Query: 172 YPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
YPEKVNPGRQGVG N RSIGKNVSPIEVKFTGKQP+D+
Sbjct: 175 YPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>emb|CAA42623.1| PSI-D2 [Nicotiana sylvestris] gi|100292|pir||S18348 photosystem I
chain II.D2 precursor - wood tobacco
gi|131167|sp|P29302|PSAD_NICSY Photosystem I reaction
center subunit II, chloroplast precursor (Photosystem I
20 kDa subunit) (PSI-D)
Length = 204
Score = 315 bits (808), Expect = 4e-85
Identities = 166/212 (78%), Positives = 175/212 (82%), Gaps = 11/212 (5%)
Query: 1 MAMATQASLFTPPLSSPK---PWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTT 57
MAMATQASLFTP LS+PK PWKQ +L+ S K +K T + A A T
Sbjct: 1 MAMATQASLFTPALSAPKSSAPWKQ--SLASFSPKQLKSTVSAPRPIRA----MAEEAAT 54
Query: 58 KEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 117
KE APVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG
Sbjct: 55 KEAE--APVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 112
Query: 118 AAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 177
AAIMREG NLLKLARKEQCLALG RLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 113 AAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVN 172
Query: 178 PGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
GRQGVGQNFRSIGKN SPIEVKFTGKQ +D+
Sbjct: 173 AGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204
>emb|CAA54744.1| psaD [Spinacia oleracea]
Length = 211
Score = 300 bits (769), Expect = 1e-80
Identities = 164/218 (75%), Positives = 175/218 (80%), Gaps = 16/218 (7%)
Query: 1 MAMATQASLFT-PPLSSPKP--------WKQPSTLSFISLKPIKFTTKTTKISAADEKTE 51
MAM T A+LF+ LSS KP +KQPS ++F S KP T + +AA E
Sbjct: 1 MAMGTPATLFSRSSLSSAKPIETRLTTSFKQPSAVTFAS-KPAS-RLHTIRAAAAAEGKA 58
Query: 52 AASVTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIF 111
AA+ TKE A FTPPELDPNTPSPIF GSTG LLRKAQVEEFYVITWESPKEQIF
Sbjct: 59 AAATETKEATKA----FTPPELDPNTPSPIFAGSTG-LLRKAQVEEFYVITWESPKEQIF 113
Query: 112 EMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGV 171
EMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKIKYQFYRVFP+GEVQYLHPKDGV
Sbjct: 114 EMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGV 173
Query: 172 YPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
YPEKVNPGRQGVG N RSIGKNVSPIEVKFTGKQP+D+
Sbjct: 174 YPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 211
>ref|XP_483783.1| putative photosystem I reaction center subunit II, chloroplast
precursor (Photosystem I 20 kDa subunit) (PSI-D) [Oryza
sativa (japonica cultivar-group)]
gi|51965110|ref|XP_507339.1| PREDICTED P0604E01.24 gene
product [Oryza sativa (japonica cultivar-group)]
gi|29367391|gb|AAO72568.1| chloroplast photosystem I
reaction center subunit II precursor-like protein [Oryza
sativa (japonica cultivar-group)]
gi|45736168|dbj|BAD13214.1| putative photosystem I
reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D) [Oryza sativa
(japonica cultivar-group)]
Length = 203
Score = 297 bits (760), Expect = 1e-79
Identities = 158/211 (74%), Positives = 167/211 (78%), Gaps = 10/211 (4%)
Query: 1 MAMATQASLFTPPLSSPKPWKQP--STLSFISLKPIKFTTKTTKISAADEKTEAASVTTK 58
MAMATQAS L + +P STLS + + T + AA E AA+ T
Sbjct: 1 MAMATQASAAKCHLLAAWAPAKPRSSTLSMPTSRA------PTSLRAAAEDQPAAAAT-- 52
Query: 59 EEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 118
EE AP GF PP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGA
Sbjct: 53 EEKKPAPAGFVPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGA 112
Query: 119 AIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 178
AIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN
Sbjct: 113 AIMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNA 172
Query: 179 GRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
GRQGVGQNFRSIGKNVSPIEVKFTGK FD+
Sbjct: 173 GRQGVGQNFRSIGKNVSPIEVKFTGKNVFDI 203
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D)
gi|478404|pir||JQ2247 photosystem I chain D precursor -
barley gi|167085|gb|AAA18567.1| PSI-D subunit
Length = 205
Score = 295 bits (755), Expect = 6e-79
Identities = 157/213 (73%), Positives = 166/213 (77%), Gaps = 12/213 (5%)
Query: 1 MAMATQASLFTPPLS----SPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVT 56
MAMATQAS T L SP +P+TL+ S + AA T A +
Sbjct: 1 MAMATQASAATRHLITAAWSPSAKPRPATLAMPSS-----ARGPAPLFAAAPDTPAPAAP 55
Query: 57 TKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTG 116
E APA GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTG
Sbjct: 56 PAEPAPA---GFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTG 112
Query: 117 GAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKV 176
GAAIMREGPNLLKLARKEQCLALGNRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKV
Sbjct: 113 GAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKV 172
Query: 177 NPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
N GRQGVGQNFRSIGKNVSPIEVKFTGK FD+
Sbjct: 173 NAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205
>gb|AAN38693.1| At1g03130/F10O3_4 [Arabidopsis thaliana] gi|12083234|gb|AAG48776.1|
putative photosystem I reaction center subunit II
precursor [Arabidopsis thaliana]
gi|21555282|gb|AAM63823.1| putative photosystem I
reaction center subunit II precursor [Arabidopsis
thaliana] gi|11692912|gb|AAG40059.1| At1g03130
[Arabidopsis thaliana] gi|15218708|ref|NP_171812.1|
photosystem I reaction center subunit II, chloroplast,
putative / photosystem I 20 kDa subunit, putative /
PSI-D, putative (PSAD2) [Arabidopsis thaliana]
gi|14517460|gb|AAK62620.1| At1g03130/F10O3_4
[Arabidopsis thaliana] gi|4587564|gb|AAD25795.1| Strong
similarity to gb|X14017 photosystem I reaction centre
subunit II precursor (psaD) from Spinacia oleracea.
ESTs gb|R30423, gb|T42998, gb|Z18178, gb|T14133,
gb|N65521, gb|T42498, gb|T41918, gb|N38024, gb|R65109,
gb|T43849, gb|AA394388, gb|T20925 and gb|N65696 come
from this gene. [Arabidopsis thaliana]
gi|25298980|pir||D86162 hypothetical protein F10O3.4 -
Arabidopsis thaliana gi|38503234|sp|Q9SA56|PSD2_ARATH
Photosystem I reaction center subunit II-2, chloroplast
precursor (Photosystem I 20 kDa subunit 2) (PSI-D2)
Length = 204
Score = 293 bits (750), Expect = 2e-78
Identities = 150/208 (72%), Positives = 167/208 (80%), Gaps = 5/208 (2%)
Query: 3 MATQAS-LFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEA 61
MATQA+ +F+P +++ + L S +P + T I A ++ +A+ KE
Sbjct: 1 MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKE-- 58
Query: 62 PAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 121
APVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 59 --APVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 116
Query: 122 REGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 181
REGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR+
Sbjct: 117 REGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGRE 176
Query: 182 GVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
GVG N RSIGKNVSPIEVKFTGKQ +D+
Sbjct: 177 GVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>gb|AAM66066.1| putative photosystem I reaction center subunit II precursor
[Arabidopsis thaliana]
Length = 208
Score = 289 bits (740), Expect = 3e-77
Identities = 153/212 (72%), Positives = 162/212 (76%), Gaps = 9/212 (4%)
Query: 3 MATQASLFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTE-----AASVTT 57
MATQA+ + L F S + TK + EKT+ AAS T
Sbjct: 1 MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAASPAT 60
Query: 58 KEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGG 117
KE APVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGG
Sbjct: 61 KE----APVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGG 116
Query: 118 AAIMREGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVN 177
AAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK N
Sbjct: 117 AAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKAN 176
Query: 178 PGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
PGR+GVG N RSIGKNVSPIEVKFTGKQ +D+
Sbjct: 177 PGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>emb|CAB77762.1| putative photosystem I reaction center subunit II precursor
[Arabidopsis thaliana] gi|5732199|emb|CAB52676.1|
photosystem I subunit II precursor [Arabidopsis
thaliana] gi|21281091|gb|AAM44987.1| putative
photosystem I reaction center subunit II precursor
[Arabidopsis thaliana] gi|11908080|gb|AAG41469.1|
putative photosystem I reaction center subunit II
precursor [Arabidopsis thaliana]
gi|20908086|gb|AAM26726.1| AT4g02770/T5J8_7 [Arabidopsis
thaliana] gi|20148685|gb|AAM10233.1| unknown protein
[Arabidopsis thaliana] gi|17064872|gb|AAL32590.1|
Unknown protein [Arabidopsis thaliana]
gi|15235503|ref|NP_192186.1| photosystem I reaction
center subunit II, chloroplast, putative / photosystem I
20 kDa subunit, putative / PSI-D, putative (PSAD1)
[Arabidopsis thaliana] gi|14488084|gb|AAK63862.1|
AT4g02770/T5J8_7 [Arabidopsis thaliana]
gi|11692846|gb|AAG40026.1| AT4g02770 [Arabidopsis
thaliana] gi|4263525|gb|AAD15351.1| putative photosystem
I reaction center subunit II precursor [Arabidopsis
thaliana] gi|25298979|pir||C85035 hypothetical protein
AT4g02770 [imported] - Arabidopsis thaliana
gi|38503230|sp|Q9S7H1|PSD1_ARATH Photosystem I reaction
center subunit II-1, chloroplast precursor (Photosystem
I 20 kDa subunit 1) (PSI-D1)
Length = 208
Score = 288 bits (738), Expect = 5e-77
Identities = 141/178 (79%), Positives = 149/178 (83%), Gaps = 3/178 (1%)
Query: 32 KPIKFTTKTTKISAADEKTEAASVTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGGLLR 91
K + FT + D AA+ +EAP VGFTPP+LDPNTPSPIF GSTGGLLR
Sbjct: 34 KSLSFTKTAIRAEKTDSSAAAAAAPATKEAP---VGFTPPQLDPNTPSPIFAGSTGGLLR 90
Query: 92 KAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIKY 151
KAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI Y
Sbjct: 91 KAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITY 150
Query: 152 QFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
QFYRVFPNGEVQYLHPKDGVYPEK NPGR+GVG N RSIGKNVSPIEVKFTGKQ +D+
Sbjct: 151 QFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>emb|CAB52677.1| photosystem I subunit II precursor [Arabidopsis thaliana]
Length = 204
Score = 287 bits (734), Expect = 2e-76
Identities = 146/208 (70%), Positives = 165/208 (79%), Gaps = 5/208 (2%)
Query: 3 MATQAS-LFTPPLSSPKPWKQPSTLSFISLKPIKFTTKTTKISAADEKTEAASVTTKEEA 61
MATQA+ +F+P +++ + L S +P + T I A ++ +A+ KE
Sbjct: 1 MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKE-- 58
Query: 62 PAAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 121
APVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIM
Sbjct: 59 --APVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIM 116
Query: 122 REGPNLLKLARKEQCLALGNRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 181
REGPNLLKLARKEQCLALG RLRSK+KI YQFYRVFPNGEVQYLHPKDG+YPEK NPGR+
Sbjct: 117 REGPNLLKLARKEQCLALGTRLRSKFKITYQFYRVFPNGEVQYLHPKDGIYPEKANPGRE 176
Query: 182 GVGQNFRSIGKNVSPIEVKFTGKQPFDV 209
G G N RSIGKNVSPIEVKF GKQ +D+
Sbjct: 177 GFGLNMRSIGKNVSPIEVKFPGKQSYDL 204
>gb|AAL73208.1| photosystem I subunit [Chlamydomonas reinhardtii]
gi|498824|emb|CAA56122.1| psaD [Chlamydomonas
reinhardtii] gi|1644293|emb|CAA52440.1| PSI reaction
center, subunit II [Chlamydomonas reinhardtii]
gi|629468|pir||S47088 psaD protein - Chlamydomonas
reinhardtii gi|2499965|sp|Q39615|PSAD_CHLRE Photosystem
I reaction center subunit II, chloroplast precursor
(Photosystem I 20 kDa subunit) (PSI-D)
Length = 196
Score = 224 bits (570), Expect = 2e-57
Identities = 110/177 (62%), Positives = 134/177 (75%), Gaps = 9/177 (5%)
Query: 37 TTKTTKISAADEKTEAASVTTKEEAPAAPVG---------FTPPELDPNTPSPIFGGSTG 87
T +++++ A +V + EA AAP +T P L+P+TPSPIFGGSTG
Sbjct: 13 TRASSRVAVAARPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTG 72
Query: 88 GLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKY 147
GLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK +KEQCLAL +LR+K+
Sbjct: 73 GLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKF 132
Query: 148 KIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGK 204
K+ FYRVFP+G+VQYLHP DGVYPEKVN GR G QN R IG+NV+PI+VKF+G+
Sbjct: 133 KLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGR 189
>emb|CAB64901.1| photosystem I reaction centre subunit II precursor [Cyanophora
paradoxa]
Length = 220
Score = 212 bits (539), Expect = 6e-54
Identities = 104/181 (57%), Positives = 130/181 (71%), Gaps = 1/181 (0%)
Query: 29 ISLKPIKFTTKTTKISAADEKTEAASVTTKEEAPAAPVGFTPPELDPNTPSPIFGGSTGG 88
++ K F + E+ EAA E+ AAP F+ P L+ N P+PIFGGSTGG
Sbjct: 35 VAAKKTTFEAAPARFIVRAEEEEAAPAEKVEKKAAAPKPFSVPTLNLNAPTPIFGGSTGG 94
Query: 89 LLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYK 148
LLRKA+VEEFY ITW E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+K
Sbjct: 95 LLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFK 154
Query: 149 I-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIGKNVSPIEVKFTGKQPF 207
I Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR VG N R IG+N P ++KF G++ F
Sbjct: 155 ITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVGSNKRRIGQNPDPAKLKFKGQETF 214
Query: 208 D 208
D
Sbjct: 215 D 215
>gb|AAC35693.1| PSI ferredoxin-binding protein II [Guillardia theta]
gi|11467707|ref|NP_050759.1| photosystem I subunit II
[Guillardia theta] gi|6093799|sp|O78502|PSAD_GUITH
PHOTOSYSTEM I REACTION CENTRE SUBUNIT II (PHOTOSYSTEM I
16 KD POLYPEPTIDE) (PSI-D)
Length = 141
Score = 189 bits (481), Expect = 3e-47
Identities = 91/133 (68%), Positives = 108/133 (80%), Gaps = 1/133 (0%)
Query: 73 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLAR 132
L+ PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LAR
Sbjct: 5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLAR 64
Query: 133 KEQCLALGNRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIG 191
KEQCLALG ++++ +KI Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG SIG
Sbjct: 65 KEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIG 124
Query: 192 KNVSPIEVKFTGK 204
KN++P ++KFT K
Sbjct: 125 KNLNPAQIKFTNK 137
>ref|YP_063618.1| photosystem I reaction center subunit II [Gracilaria tenuistipitata
var. liui] gi|50657708|gb|AAT79693.1| photosystem I
reaction center subunit II [Gracilaria tenuistipitata
var. liui]
Length = 141
Score = 189 bits (480), Expect = 4e-47
Identities = 91/137 (66%), Positives = 107/137 (77%), Gaps = 1/137 (0%)
Query: 73 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLAR 132
+D PSP FGGSTGG LR A++EE Y ITW S +EQIFEMP GGAAIMREG NLL LAR
Sbjct: 5 IDLKMPSPTFGGSTGGWLRSAEIEEKYAITWTSKQEQIFEMPIGGAAIMREGNNLLYLAR 64
Query: 133 KEQCLALGNRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIG 191
KEQCLAL +L+ ++KIK ++ YR+FPN EVQYLHPKDGV+PEKVNPGR G+G SIG
Sbjct: 65 KEQCLALSTQLKMQFKIKDFKIYRIFPNSEVQYLHPKDGVFPEKVNPGRVGIGNIDHSIG 124
Query: 192 KNVSPIEVKFTGKQPFD 208
KN P+ KFTGK ++
Sbjct: 125 KNEDPVNKKFTGKATYE 141
>gb|AAC08165.1| Photosystem I reaction centre subunit II [Porphyra purpurea]
gi|11465745|ref|NP_053889.1| photosystem I subunit II
[Porphyra purpurea] gi|2147918|pir||S73200 photosystem I
chain II - red alga (Porphyra purpurea) chloroplast
gi|1709817|sp|P51279|PSAD_PORPU PHOTOSYSTEM I REACTION
CENTRE SUBUNIT II (PHOTOSYSTEM I 16 KD POLYPEPTIDE)
(PSI-D)
Length = 141
Score = 186 bits (471), Expect = 5e-46
Identities = 91/140 (65%), Positives = 104/140 (74%), Gaps = 1/140 (0%)
Query: 70 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLK 129
P ++ N PSP FGGSTGG LR A+VEE Y ITW E FEMPTGG A MR+G NLL
Sbjct: 2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLY 61
Query: 130 LARKEQCLALGNRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFR 188
LA+KEQCLALG +L+ K+KI Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR +
Sbjct: 62 LAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDH 121
Query: 189 SIGKNVSPIEVKFTGKQPFD 208
SIGKNV+PI VKFT K +D
Sbjct: 122 SIGKNVNPINVKFTNKATYD 141
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,333,775
Number of Sequences: 2540612
Number of extensions: 18315696
Number of successful extensions: 41133
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 40827
Number of HSP's gapped (non-prelim): 346
length of query: 209
length of database: 863,360,394
effective HSP length: 122
effective length of query: 87
effective length of database: 553,405,730
effective search space: 48146298510
effective search space used: 48146298510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 72 (32.3 bits)
Medicago: description of AC145222.8