BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145220.5 + phase: 0 /pseudo
(141 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB5... 78 4e-14
gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum] 41 0.005
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 41 0.005
ref|XP_636226.1| cell surface protein DTFA [Dictyostelium discoi... 38 0.059
gb|AAC98306.1| cell surface protein DTFA [Dictyostelium discoide... 38 0.059
ref|XP_643483.1| putative myb transcription factor [Dictyosteliu... 37 0.10
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 37 0.13
gi|41617264 TPA: HDC06910 [Drosophila melanogaster] 37 0.13
emb|CAA05357.1| Myb2 protein [Dictyostelium discoideum] 36 0.17
gb|AAM45304.2| similar to Dictyostelium discoideum (Slime mold).... 36 0.17
emb|CAE58939.1| Hypothetical protein CBG02207 [Caenorhabditis br... 36 0.23
gb|AAF58433.1| CG3905-PA [Drosophila melanogaster] gi|24653253|r... 35 0.29
gb|EAL90974.1| bZIP transcription factor (LziP), putative [Asper... 35 0.29
gb|AAW42594.1| RNA helicase, putative [Cryptococcus neoformans v... 35 0.29
ref|XP_419145.1| PREDICTED: similar to elastin microfibril inter... 35 0.29
emb|CAG83499.1| unnamed protein product [Yarrowia lipolytica CLI... 35 0.38
ref|XP_644810.1| hypothetical protein DDB0217138 [Dictyostelium ... 35 0.50
ref|XP_643659.1| hypothetical protein DDB0202550 [Dictyostelium ... 35 0.50
ref|XP_326026.1| hypothetical protein [Neurospora crassa] gi|289... 35 0.50
gb|AAA96524.1| alpha-gliadin storage protein 35 0.50
>pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB50037.1| RPE15
gene product
Length = 219
Score = 78.2 bits (191), Expect = 4e-14
Identities = 40/62 (64%), Positives = 45/62 (72%), Gaps = 4/62 (6%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT----FPLIPMLYAKLLPTLLLKGQA 56
PLP GQP VPVNA+ Q++Q QPPAQQ+QQQQ P FP IPM YA+LLPTLL KG
Sbjct: 136 PLPPGQPPVPVNAMAQQVQHQPPAQQQQQQQQGPRPKTYFPPIPMRYAELLPTLLAKGHC 195
Query: 57 ST 58
T
Sbjct: 196 VT 197
>gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 41.2 bits (95), Expect = 0.005
Identities = 29/77 (37%), Positives = 35/77 (44%), Gaps = 1/77 (1%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*S 60
P P Q Q V Q+ QQQ P Q RQ+ R F +PM YA+LLP LL G +
Sbjct: 380 PQPRQQQQQRVQQPQQQQQQQRPYQPRQRMPDR-RFDSLPMSYAELLPELLRLGMVELRT 438
Query: 61 IASQVPFGPQV*FPSRC 77
+A P RC
Sbjct: 439 MAPPTVLPPGYDANVRC 455
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 41.2 bits (95), Expect = 0.005
Identities = 29/77 (37%), Positives = 35/77 (44%), Gaps = 1/77 (1%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*S 60
P P Q Q V Q+ QQQ P Q RQ+ R F +PM YA+LLP LL G +
Sbjct: 380 PQPRQQQQQRVQQPQQQQQQQRPYQPRQRMPDR-RFDSLPMSYAELLPELLRLGMVELRT 438
Query: 61 IASQVPFGPQV*FPSRC 77
+A P RC
Sbjct: 439 MAPPTVLPPGYDANVRC 455
>ref|XP_636226.1| cell surface protein DTFA [Dictyostelium discoideum]
gi|60464587|gb|EAL62722.1| cell surface protein DTFA
[Dictyostelium discoideum]
Length = 1402
Score = 37.7 bits (86), Expect = 0.059
Identities = 15/35 (42%), Positives = 23/35 (64%)
Query: 14 VVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLP 48
+ Q+ +Q PP QQ+QQQ P PL+P ++ +L P
Sbjct: 229 IQQKSKQPPPQQQQQQQPPPPPIPLLPQIHQQLKP 263
>gb|AAC98306.1| cell surface protein DTFA [Dictyostelium discoideum]
gi|11358976|pir||T17456 cell surface protein DTFA -
slime mold (Dictyostelium discoideum)
Length = 1402
Score = 37.7 bits (86), Expect = 0.059
Identities = 15/35 (42%), Positives = 23/35 (64%)
Query: 14 VVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLP 48
+ Q+ +Q PP QQ+QQQ P PL+P ++ +L P
Sbjct: 229 IQQKSKQPPPQQQQQQQPPPPPIPLLPQIHQQLKP 263
>ref|XP_643483.1| putative myb transcription factor [Dictyostelium discoideum]
gi|60471517|gb|EAL69473.1| myb-related protein
[Dictyostelium discoideum]
Length = 711
Score = 37.0 bits (84), Expect = 0.10
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 4 SGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT----FPLIPMLYAKLLPTLLLKGQAST* 59
+ QPQ P ++ Q+ QQQ QQ+QQQQ + IP + L+
Sbjct: 19 NAQPQQPQQSIQQQQQQQQQQQQQQQQQQQQQQHHHHQNIPPTPQPIFSPQLINKNFGCY 78
Query: 60 SIASQVPFGPQV*FPSRCY 78
++Q+P PQ FP + +
Sbjct: 79 GTSNQIPMIPQALFPQQTF 97
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 36.6 bits (83), Expect = 0.13
Identities = 26/78 (33%), Positives = 36/78 (45%), Gaps = 2/78 (2%)
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT--FPLIPMLYAKLLPTLLLKGQAST* 59
+P+ QP+ VQ+ QQQ + Q +Q P F +PM YA+LLP LL G
Sbjct: 376 IPAPQPRQQQQQRVQQPQQQQQQRPYQPRQRMPDRRFDSLPMSYAELLPELLRLGLVELC 435
Query: 60 SIASQVPFGPQV*FPSRC 77
++A P RC
Sbjct: 436 TMAPPTVLPPGYDANVRC 453
>gi|41617264 TPA: HDC06910 [Drosophila melanogaster]
Length = 682
Score = 36.6 bits (83), Expect = 0.13
Identities = 16/26 (61%), Positives = 19/26 (72%)
Query: 6 QPQVPVNAVVQRMQQQPPAQQRQQQQ 31
QP VPV+ + QQQPP QQ+QQQQ
Sbjct: 47 QPYVPVSCEYPQQQQQPPPQQQQQQQ 72
>emb|CAA05357.1| Myb2 protein [Dictyostelium discoideum]
Length = 699
Score = 36.2 bits (82), Expect = 0.17
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 4 SGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT------FPLIPMLYAKLLPTLLLKGQAS 57
+ QPQ P ++ Q+ QQQ QQ+QQQQ + IP + L+
Sbjct: 19 NAQPQQPQQSIQQQQQQQQQQQQQQQQQQQQQQQQHHHHQNIPPTPQPIFSPQLINKNFG 78
Query: 58 T*SIASQVPFGPQV*FPSRCY 78
++Q+P PQ FP + +
Sbjct: 79 CYGTSNQIPMIPQALFPQQTF 99
>gb|AAM45304.2| similar to Dictyostelium discoideum (Slime mold). Myb2 protein
Length = 682
Score = 36.2 bits (82), Expect = 0.17
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 4 SGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT----FPLIPMLYAKLLPTLLLKGQAST* 59
+ QPQ P ++ Q+ QQQ QQ+QQQQ + IP + L+
Sbjct: 19 NAQPQQPQQSLQQQQQQQQQQQQQQQQQQQQQQHHHHQNIPPTPQPIFSPQLINKNFGCY 78
Query: 60 SIASQVPFGPQV*FPSRCY 78
++Q+P PQ FP + +
Sbjct: 79 GTSNQIPMIPQALFPQQTF 97
>emb|CAE58939.1| Hypothetical protein CBG02207 [Caenorhabditis briggsae]
Length = 651
Score = 35.8 bits (81), Expect = 0.23
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 5 GQPQVPVNAVVQRMQQQPPAQQRQQQQARP 34
G P+VP V Q+ Q+PP QQ QQQQ RP
Sbjct: 513 GPPRVPNAGVQQQNVQRPPPQQLQQQQQRP 542
>gb|AAF58433.1| CG3905-PA [Drosophila melanogaster] gi|24653253|ref|NP_523726.2|
CG3905-PA [Drosophila melanogaster]
Length = 1368
Score = 35.4 bits (80), Expect = 0.29
Identities = 17/49 (34%), Positives = 26/49 (52%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPT 49
P P+ +P+ Q+ Q Q QQ+QQQQ + F ++P + LPT
Sbjct: 595 PTPTAEPEQQQQQQQQQQQPQQQQQQQQQQQQQQQFVVLPKIKDLTLPT 643
>gb|EAL90974.1| bZIP transcription factor (LziP), putative [Aspergillus fumigatus
Af293]
Length = 651
Score = 35.4 bits (80), Expect = 0.29
Identities = 28/75 (37%), Positives = 39/75 (51%), Gaps = 8/75 (10%)
Query: 2 LPSGQPQVPVNAVVQ----RMQQQPPAQQRQQ-QQARPTFPLIPMLYAKLLPTLLLKGQA 56
LP Q QVP + V Q + QQQPP QQ+QQ QQ +P PM + +++ +
Sbjct: 390 LPQSQSQVPQSQVPQSQPQQQQQQPPQQQQQQQQQIKPQSQPQPMGQPPMQASIV---RD 446
Query: 57 ST*SIASQVPFGPQV 71
T + + VP PQV
Sbjct: 447 PTPNHSIPVPQNPQV 461
>gb|AAW42594.1| RNA helicase, putative [Cryptococcus neoformans var. neoformans
JEC21] gi|50259261|gb|EAL21934.1| hypothetical protein
CNBC0740 [Cryptococcus neoformans var. neoformans
B-3501A] gi|58265490|ref|XP_569901.1| RNA helicase,
putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 625
Score = 35.4 bits (80), Expect = 0.29
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1 PLPSGQP--QVPVNAVVQRMQQQPPAQQRQQQQARPTF 36
P+PS Q Q P A VQ+ QQQ QQ+QQQQ +P +
Sbjct: 447 PVPSHQAAQQSPAAAPVQQQQQQQQQQQQQQQQQQPQY 484
Score = 31.6 bits (70), Expect = 4.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQAR 33
P PS QPQ P +Q Q PP Q R QQQ +
Sbjct: 534 PAPSTQPQAPAQTPIQ--GQIPPTQPRAQQQGQ 564
>ref|XP_419145.1| PREDICTED: similar to elastin microfibril interfacer 2; extracellular
glycoprotein EMILIN-2 precursor [Gallus gallus]
Length = 1375
Score = 35.4 bits (80), Expect = 0.29
Identities = 24/66 (36%), Positives = 33/66 (49%), Gaps = 5/66 (7%)
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*SI 61
L G P +P +Q +Q+PP Q Q + ARP P P L PT+ +G A+ +
Sbjct: 1205 LQPGSPLLPYRPRIQPPRQRPPVQPPQPRHARPALPGYPKLSP---PTIDSQGPAA--AA 1259
Query: 62 ASQVPF 67
AS V F
Sbjct: 1260 ASLVSF 1265
>emb|CAG83499.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50547553|ref|XP_501246.1| hypothetical protein
[Yarrowia lipolytica]
Length = 539
Score = 35.0 bits (79), Expect = 0.38
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARP 34
P P QP+ P Q+ QQQP QQR+ Q RP
Sbjct: 176 PQPKAQPKPPPKQQQQQQQQQPRPQQRRPQPGRP 209
>ref|XP_644810.1| hypothetical protein DDB0217138 [Dictyostelium discoideum]
gi|66822171|ref|XP_644440.1| hypothetical protein
DDB0217237 [Dictyostelium discoideum]
gi|60472958|gb|EAL70907.1| hypothetical protein
DDB0217138 [Dictyostelium discoideum]
gi|60472563|gb|EAL70514.1| hypothetical protein
DDB0217237 [Dictyostelium discoideum]
Length = 1120
Score = 34.7 bits (78), Expect = 0.50
Identities = 16/31 (51%), Positives = 19/31 (60%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQ 31
P+ S QP P + Q+ QQQ P QQ QQQQ
Sbjct: 911 PINSQQPPPPTQQLQQQQQQQQPTQQLQQQQ 941
>ref|XP_643659.1| hypothetical protein DDB0202550 [Dictyostelium discoideum]
gi|60471776|gb|EAL69731.1| hypothetical protein
DDB0202550 [Dictyostelium discoideum]
Length = 1048
Score = 34.7 bits (78), Expect = 0.50
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 1 PLPSGQPQVPVNAV--VQRMQQQPPAQ-----QRQQQQARP--TFPLIPMLY 43
P P +PQ P Q+ QQQPP+Q Q+QQQQ+ P + PLI Y
Sbjct: 700 PRPGKRPQQPTTTTNTTQQQQQQPPSQQQPQQQQQQQQSSPQSSSPLIQQKY 751
>ref|XP_326026.1| hypothetical protein [Neurospora crassa] gi|28924365|gb|EAA33504.1|
hypothetical protein [Neurospora crassa]
Length = 1533
Score = 34.7 bits (78), Expect = 0.50
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT 35
P +G P VP A+ Q+ QQQ QQ+QQQQ +P+
Sbjct: 132 PFQTGMPPVP--AIPQQFQQQQSFQQQQQQQQQPS 164
>gb|AAA96524.1| alpha-gliadin storage protein
Length = 289
Score = 34.7 bits (78), Expect = 0.50
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1 PLPSGQPQV--PVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTL 50
P P QPQ P + Q+ QQQ QQ+QQQQ + L +L +L+P +
Sbjct: 99 PYPQPQPQYSQPQQPISQQQQQQQQQQQQQQQQQQQQQILQQILQQQLIPCM 150
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.352 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,181,688
Number of Sequences: 2540612
Number of extensions: 6911725
Number of successful extensions: 136182
Number of sequences better than 10.0: 281
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 130429
Number of HSP's gapped (non-prelim): 2792
length of query: 141
length of database: 863,360,394
effective HSP length: 117
effective length of query: 24
effective length of database: 566,108,790
effective search space: 13586610960
effective search space used: 13586610960
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC145220.5