BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145061.22 - phase: 0 /pseudo
(604 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 190 1e-46
gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis tha... 189 2e-46
gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis tha... 189 2e-46
gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 189 2e-46
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi... 189 2e-46
gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum] 157 9e-37
gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsi... 154 8e-36
gb|AAP53641.1| putative retroelement [Oryza sativa (japonica cul... 151 5e-35
ref|XP_474511.1| OSJNBb0040D15.12 [Oryza sativa (japonica cultiv... 150 9e-35
gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana] 150 1e-34
ref|XP_507106.1| PREDICTED OJ1499_A07.20 gene product [Oryza sat... 149 2e-34
ref|XP_469280.1| gag-pol polyprotein [Oryza sativa (japonica cul... 149 2e-34
ref|NP_916659.1| putative copia-type polyprotein [Oryza sativa (... 149 3e-34
ref|XP_470888.1| putative gag-pol polyprotein [Oryza sativa (jap... 149 3e-34
gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cult... 149 3e-34
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 143 2e-32
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 143 2e-32
gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana] 143 2e-32
gb|AAM15219.1| putative retroelement pol polyprotein [Arabidopsi... 139 3e-31
ref|NP_910533.1| EST D24315(R1718) corresponds to a region of th... 139 3e-31
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
thaliana] gi|11278363|pir||T49313 copia-type reverse
transcriptase-like protein - Arabidopsis thaliana
Length = 1272
Score = 190 bits (482), Expect = 1e-46
Identities = 90/214 (42%), Positives = 144/214 (67%), Gaps = 1/214 (0%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
N+LS+GQL++KGY I +KDN+L + DK L+ K P++KN+ F +++ CL +
Sbjct: 403 NILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLK-MCY 461
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
E+SWLWH FGHLN+ L L KEM+ +P ++ P++ + L+G Q + +F ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSS 521
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+++ L +++ DV GP++ S+G+ YF+ F+D+FS+ WV +K KS F+IF+KFK
Sbjct: 522 RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAH 581
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
VEK+SG I ++R+D GGE+T K F K+CE+NG+
Sbjct: 582 VEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGI 615
Score = 40.8 bits (94), Expect = 0.13
Identities = 21/65 (32%), Positives = 39/65 (59%), Gaps = 4/65 (6%)
Query: 6 LPTLESGNWESWSVVMKNLFGAKDLFNIVQNGYDELGENP---TEMHRNAYKELKKKDCK 62
+P L N+++WS+ MK + GA D++ IV+ G+ E EN ++ ++ ++ +K+D K
Sbjct: 10 VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIE-PENEGSLSQTQKDGLRDSRKRDKK 68
Query: 63 TLFFI 67
L I
Sbjct: 69 ALCLI 73
>gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 189 bits (481), Expect = 2e-46
Identities = 90/214 (42%), Positives = 145/214 (67%), Gaps = 1/214 (0%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
N+LS+GQL++KGY I +KDN+L + D+ L+ K P++KN+ F +++ CL +
Sbjct: 403 NILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK-MCY 461
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
E+SWLWH FGHLN+ L L KEM+ +P ++ P++ + L+GKQ + +F ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+++ L +++ DV GP++ S+G+ YF+ F+D+FS+ WV +K KS F+IF+KFK
Sbjct: 522 RAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAH 581
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
VEK+SG I ++R+D GGE+T K F K+CE+NG+
Sbjct: 582 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGI 615
Score = 40.8 bits (94), Expect = 0.13
Identities = 21/65 (32%), Positives = 39/65 (59%), Gaps = 4/65 (6%)
Query: 6 LPTLESGNWESWSVVMKNLFGAKDLFNIVQNGYDELGENP---TEMHRNAYKELKKKDCK 62
+P L N+++WS+ MK + GA D++ IV+ G+ E EN ++ ++ ++ +K+D K
Sbjct: 10 VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIE-PENEGSLSQTQKDGLRDSRKRDKK 68
Query: 63 TLFFI 67
L I
Sbjct: 69 ALCLI 73
>gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321254|gb|AAG50698.1| copia-type polyprotein,
putative [Arabidopsis thaliana] gi|25301687|pir||F96614
probable copia-type polyprotein T18I24.5 [imported] -
Arabidopsis thaliana
Length = 1320
Score = 189 bits (481), Expect = 2e-46
Identities = 90/214 (42%), Positives = 145/214 (67%), Gaps = 1/214 (0%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
N+LS+GQL++KGY I +KDN+L + D+ L+ K P++KN+ F +++ CL +
Sbjct: 403 NILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK-MCY 461
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
E+SWLWH FGHLN+ L L KEM+ +P ++ P++ + L+GKQ + +F ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+++ L +++ DV GP++ S+G+ YF+ F+D+FS+ WV +K KS F+IF+KFK
Sbjct: 522 RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAH 581
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
VEK+SG I ++R+D GGE+T K F K+CE+NG+
Sbjct: 582 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGI 615
Score = 40.8 bits (94), Expect = 0.13
Identities = 21/65 (32%), Positives = 39/65 (59%), Gaps = 4/65 (6%)
Query: 6 LPTLESGNWESWSVVMKNLFGAKDLFNIVQNGYDELGENP---TEMHRNAYKELKKKDCK 62
+P L N+++WS+ MK + GA D++ IV+ G+ E EN ++ ++ ++ +K+D K
Sbjct: 10 VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIE-PENEGSLSQTQKDGLRDSRKRDKK 68
Query: 63 TLFFI 67
L I
Sbjct: 69 ALCLI 73
>gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25301681|pir||F86246
hypothetical protein [imported] - Arabidopsis thaliana
Length = 1352
Score = 189 bits (481), Expect = 2e-46
Identities = 90/214 (42%), Positives = 145/214 (67%), Gaps = 1/214 (0%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
N+LS+GQL++KGY I +KDN+L + D+ L+ K P++KN+ F +++ CL +
Sbjct: 403 NILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK-MCY 461
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
E+SWLWH FGHLN+ L L KEM+ +P ++ P++ + L+GKQ + +F ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+++ L +++ DV GP++ S+G+ YF+ F+D+FS+ WV +K KS F+IF+KFK
Sbjct: 522 RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAH 581
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
VEK+SG I ++R+D GGE+T K F K+CE+NG+
Sbjct: 582 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGI 615
Score = 40.8 bits (94), Expect = 0.13
Identities = 21/65 (32%), Positives = 39/65 (59%), Gaps = 4/65 (6%)
Query: 6 LPTLESGNWESWSVVMKNLFGAKDLFNIVQNGYDELGENP---TEMHRNAYKELKKKDCK 62
+P L N+++WS+ MK + GA D++ IV+ G+ E EN ++ ++ ++ +K+D K
Sbjct: 10 VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIE-PENEGSLSQTQKDGLRDSRKRDKK 68
Query: 63 TLFFI 67
L I
Sbjct: 69 ALCLI 73
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
gi|11278364|pir||T47925 copia-type polyprotein -
Arabidopsis thaliana
Length = 1352
Score = 189 bits (481), Expect = 2e-46
Identities = 90/214 (42%), Positives = 145/214 (67%), Gaps = 1/214 (0%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
N+LS+GQL++KGY I +KDN+L + D+ L+ K P++KN+ F +++ CL +
Sbjct: 403 NILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK-MCY 461
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
E+SWLWH FGHLN+ L L KEM+ +P ++ P++ + L+GKQ + +F ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+++ L +++ DV GP++ S+G+ YF+ F+D+FS+ WV +K KS F+IF+KFK
Sbjct: 522 RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAH 581
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
VEK+SG I ++R+D GGE+T K F K+CE+NG+
Sbjct: 582 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGI 615
Score = 40.8 bits (94), Expect = 0.13
Identities = 21/65 (32%), Positives = 39/65 (59%), Gaps = 4/65 (6%)
Query: 6 LPTLESGNWESWSVVMKNLFGAKDLFNIVQNGYDELGENP---TEMHRNAYKELKKKDCK 62
+P L N+++WS+ MK + GA D++ IV+ G+ E EN ++ ++ ++ +K+D K
Sbjct: 10 VPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIE-PENEGSLSQTQKDGLRDSRKRDKK 68
Query: 63 TLFFI 67
L I
Sbjct: 69 ALCLI 73
>gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1333
Score = 157 bits (397), Expect = 9e-37
Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 3/215 (1%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAKLNCLSAIV 447
NLLSVGQL+ GYS+ DN+ + DK R + + P+ +NK F D+ + L
Sbjct: 379 NLLSVGQLMTSGYSVVFYDNACDIKDKESGRTIARVPMTQNKMFPLDISNVGNSALVVKE 438
Query: 448 NNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTT 507
NE + LWH +GHLN L LV K+M++ +P + + + GKQ R +F +
Sbjct: 439 KNETN-LWHLRYGHLNVNWLKLLVQKDMVIGLPNIK-ELDLCEGCIYGKQTRKSFPVGKS 496
Query: 508 HRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKF 567
R+ L +V+ D+ GP+++ S+G +YF+ F D++S+ WV +K KS F+ F+KFK
Sbjct: 497 WRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKA 556
Query: 568 FVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
FVE QSG I SLRTD GGE+ F FCEENG+
Sbjct: 557 FVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGI 591
Score = 41.6 bits (96), Expect = 0.074
Identities = 22/62 (35%), Positives = 33/62 (52%), Gaps = 7/62 (11%)
Query: 6 LPTLESGNWESWSVVMKNLFGAKDLFNIVQNGYDELGENPTEMHRNAYKELKKKDCKTLF 65
+P N++ WS+ MK LF +++L++IV+ G E N HR K+D K LF
Sbjct: 14 IPIFRGENYQFWSLKMKTLFKSQELWDIVETGIPEGNANQMREHR-------KRDSKALF 66
Query: 66 FI 67
I
Sbjct: 67 TI 68
>gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301679|pir||E84473 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1200
Score = 154 bits (389), Expect = 8e-36
Identities = 73/215 (33%), Positives = 128/215 (58%), Gaps = 1/215 (0%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
N++S+GQ + G + +KDN L L D++ L++K ++N+ + ++KV CL
Sbjct: 325 NIISLGQATEAGCDVRLKDNYLTLHDRDGNLLVKATRSRNRLYRVELKVKNTKCLQLAAL 384
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
N D WH GH+N ++ +V KE ++ +P + + ++GKQ R F TT+
Sbjct: 385 N-DLTKWHARLGHINLETIKAMVTKEFVIGIPSAPKEKEICASCMLGKQARQVFPKATTY 443
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+ ++L +++ D+ GP+ P+ + +Y + +D+ S+ +W L+K KS AF F+ FK
Sbjct: 444 RASQILELIHGDLCGPISPPTAAKRRYILVLIDDHSRFMWSFLLKEKSEAFGKFKTFKAT 503
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGVI 603
VE+++G+ I +LRTD GGE+ + F+ FCEE G+I
Sbjct: 504 VEQETGEKIKTLRTDRGGEFLSQEFQTFCEEEGII 538
>gb|AAP53641.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37534104|ref|NP_921354.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|13940610|gb|AAK50412.1| Putative retroelement [Oryza
sativa]
Length = 1217
Score = 151 bits (382), Expect = 5e-35
Identities = 78/212 (36%), Positives = 126/212 (58%), Gaps = 2/212 (0%)
Query: 388 CNLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAKLNCLSAI 446
CN++S+GQL + G+ + M + LK+FDKN RLVMK N+ + ++++A CL A
Sbjct: 419 CNMVSLGQLTETGHRVMMDGDDLKVFDKNPWRLVMKVRRTSNRLYRIELQLASQVCLLAS 478
Query: 447 VNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTT 506
++N +WLWH GH+N+ +L LVDKEM VP + P++ L+ KQ R F
Sbjct: 479 LDNP-AWLWHARIGHVNFHALKLLVDKEMASGVPTVHHPNQLCQACLVAKQVRQPFPGMA 537
Query: 507 THRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFK 566
+R++ L +++ D+ GP+ + +YF+ +D+FS +WV +IK K A +F+KFK
Sbjct: 538 NYRAEAPLELLHMDLCGPITPSTFAGNRYFMLIVDDFSNWMWVFVIKLKDQALAVFEKFK 597
Query: 567 FFVEKQSGKSITSLRTDGGGEYTIKVFEKFCE 598
+ G++I +LRTD GGE+ F + C+
Sbjct: 598 PLAKNTVGRTIKTLRTDRGGEFLSGKFARVCD 629
>ref|XP_474511.1| OSJNBb0040D15.12 [Oryza sativa (japonica cultivar-group)]
gi|38345658|emb|CAE04422.2| OSJNBb0040D15.12 [Oryza
sativa (japonica cultivar-group)]
Length = 893
Score = 150 bits (380), Expect = 9e-35
Identities = 76/216 (35%), Positives = 130/216 (60%), Gaps = 2/216 (0%)
Query: 388 CNLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAKLNCLSAI 446
CN++S+GQL + G+ + M + L++FDKN RLVMK N+ + ++++A CL A
Sbjct: 241 CNMVSLGQLTETGHRVVMDGDDLEVFDKNPWRLVMKVRRTSNRLYRIELQLASPVCLLAS 300
Query: 447 VNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTT 506
++ + +WLWH GH+N+ +L LVDKEM+ VP + P++ L+ KQ R +F
Sbjct: 301 LD-DPAWLWHARLGHVNFHALKLLVDKEMVAGVPAVHHPNQLCQACLVAKQVRQSFPGMA 359
Query: 507 THRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFK 566
+R++ L +++ D+ GP+ + +YF+ +D+FS+ +WV +IK+K A +KFK
Sbjct: 360 NYRAEAPLELLHMDLCGPITPSTFAGNRYFMLIVDDFSRWMWVFVIKSKDQALAASEKFK 419
Query: 567 FFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
E +G++I +LRTD G E+ F + C+ G+
Sbjct: 420 PLAENTAGRTIKTLRTDRGSEFLSGEFARVCDAAGI 455
>gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 150 bits (378), Expect = 1e-34
Identities = 80/214 (37%), Positives = 128/214 (59%), Gaps = 24/214 (11%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
N+LS+GQL++KGY I +KDN+L + D+ L+ K P++KN+ F +++ CL +
Sbjct: 365 NILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK-MCY 423
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
E+SWLWH FGHLN+ L L KEM+ +P ++ P++ + L+GKQ + +F ++
Sbjct: 424 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 483
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+++ L +++ DV GP++ S+ KS F IF+KFK
Sbjct: 484 RAQKPLELIHTDVCGPIKPKSL-----------------------EKSEVFKIFKKFKAH 520
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
VEK+SG I ++R+D GGE+T K F K+CE+NG+
Sbjct: 521 VEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGI 554
Score = 41.2 bits (95), Expect = 0.097
Identities = 21/65 (32%), Positives = 39/65 (59%), Gaps = 4/65 (6%)
Query: 6 LPTLESGNWESWSVVMKNLFGAKDLFNIVQNGYDELGENP---TEMHRNAYKELKKKDCK 62
+P L N+++WS+ MK + GA D++ IV+ G+ E EN ++ ++ ++ +K+D K
Sbjct: 10 VPVLTKSNYDNWSLQMKAILGAHDVWEIVEKGFIE-PENEGSLSQTQKDGLRDSRKRDKK 68
Query: 63 TLFFI 67
L I
Sbjct: 69 ALCLI 73
>ref|XP_507106.1| PREDICTED OJ1499_A07.20 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 1427
Score = 149 bits (377), Expect = 2e-34
Identities = 77/224 (34%), Positives = 135/224 (59%), Gaps = 3/224 (1%)
Query: 381 MFSMPPVC-NLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVA 438
+F +P +C N++S+GQL + G+ + M ++ L++FDK+ RLVM+ N+ + ++K+A
Sbjct: 420 VFYIPSLCCNMVSLGQLTETGHRVVMDEDVLEVFDKSPLRLVMRVRRTPNRLYRIELKLA 479
Query: 439 KLNCLSAIVNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQP 498
CL ++ E +WLWH GH+N+ ++ L DK M +P + P++ L+ KQ
Sbjct: 480 TPVCLLTRMD-EPAWLWHARLGHVNFQAMKLLADKGMAGGIPAITHPNQLCQACLVAKQI 538
Query: 499 RTAFISTTTHRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGA 558
R F +T R++E L +++ D+ GP+ +M +YF+ +D+FS+ +W+ +IK K A
Sbjct: 539 RQPFPATANFRAEEPLELLHIDLCGPITPTTMAGNRYFMLIVDDFSRWMWMFVIKTKDQA 598
Query: 559 FDIFQKFKFFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
+ F KFK E +G+ I +LR+D GGE+ F + CE+ G+
Sbjct: 599 LEAFTKFKPLAENTAGRRIKTLRSDRGGEFLSGEFAQLCEQAGI 642
>ref|XP_469280.1| gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|29150404|gb|AAO72413.1| gag-pol polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1339
Score = 149 bits (377), Expect = 2e-34
Identities = 77/216 (35%), Positives = 129/216 (59%), Gaps = 2/216 (0%)
Query: 388 CNLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAKLNCLSAI 446
CN++S+GQL + G+ + M + L++FDKN RLVMK + N+ + ++++A CL A
Sbjct: 381 CNMVSLGQLTETGHRVVMDGDDLEVFDKNPWRLVMKVRRSSNRLYRIELQLASPVCLLAS 440
Query: 447 VNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTT 506
++ + +WLWH GH+N+ +L LVDKEM VP + P++ L+ KQ R F
Sbjct: 441 LD-DPAWLWHARLGHVNFHALKLLVDKEMAAGVPAVHHPNQLCQACLVAKQVRQPFPGMA 499
Query: 507 THRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFK 566
+ ++ L +++ D+ GP+ + +YF+ +D+FS +WV +IK+K A F+KFK
Sbjct: 500 NYLAEAPLELLHMDLCGPITPSTFTGNRYFMLIVDDFSHWMWVFVIKSKDQALAAFEKFK 559
Query: 567 FFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
E +G++I +LRTD GGE+ F + C+ G+
Sbjct: 560 PLAENTAGRTIKTLRTDRGGEFLSGEFARVCDAAGI 595
>ref|NP_916659.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1433
Score = 149 bits (376), Expect = 3e-34
Identities = 76/217 (35%), Positives = 134/217 (61%), Gaps = 4/217 (1%)
Query: 388 CNLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAK-LNCLSA 445
CN++S+GQL + G+ + M ++ L++FDK+ RLVMK N+ + ++K+A ++ LS+
Sbjct: 430 CNMVSLGQLTETGHRVVMDEDVLEVFDKSPWRLVMKVRRTVNRLYRIELKLAHPVSLLSS 489
Query: 446 IVNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFIST 505
+ ++ +WLWH GH+N+ ++ LVDKEM VP + P++ + L+ KQ R F +
Sbjct: 490 L--DDPAWLWHARLGHVNFQAMKLLVDKEMAGGVPAIVHPNQLCQSCLVAKQARAPFPAA 547
Query: 506 TTHRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKF 565
R++E L +++ D+ GP+ +M +YF +D++S+ +WV ++K K + D F KF
Sbjct: 548 AHFRAEEPLELLHIDLCGPITPSTMSGNRYFFLIVDDYSRWMWVFVLKTKDQSLDAFVKF 607
Query: 566 KFFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
K E +G+ + +LR+D GGE+ F + CEE G+
Sbjct: 608 KPLAENTAGRRVKTLRSDRGGEFLSGEFAQVCEEAGI 644
>ref|XP_470888.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|30017513|gb|AAP12935.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1283
Score = 149 bits (376), Expect = 3e-34
Identities = 76/216 (35%), Positives = 129/216 (59%), Gaps = 2/216 (0%)
Query: 388 CNLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAKLNCLSAI 446
CN++S+GQL + G+ + M ++ L++FDKN RLV+K N+ + ++++A CL
Sbjct: 421 CNMVSLGQLTETGHRVVMDNDDLEVFDKNPWRLVIKVRRTSNRLYRIELQLASPVCLLTS 480
Query: 447 VNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTT 506
+ + +WLWH GH+N+ +L LVDKEM VP++ P++ L+ KQ R F +
Sbjct: 481 LG-DPAWLWHARLGHVNFQTLKLLVDKEMAAGVPQVHHPNQLCQACLMAKQIRQPFPAMA 539
Query: 507 THRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFK 566
+R++ L +++ D+ GP+ + +YF+ +D+FS+ +WV +IK K A ++F KFK
Sbjct: 540 NYRAEAPLELLHMDLCGPITPSTFAVNRYFLLIVDDFSRWMWVFVIKTKDQALEMFAKFK 599
Query: 567 FFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
E + SI +LRTD GE+ F + C+E G+
Sbjct: 600 PLAENTADHSIKTLRTDHSGEFLSGEFARVCDEAGI 635
>gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50919599|ref|XP_470160.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1335
Score = 149 bits (375), Expect = 3e-34
Identities = 86/215 (40%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFD-KNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIV 447
NLLS+GQL++ GY++ +D S K+ D KN RLV K + KN+ F M L + V
Sbjct: 393 NLLSIGQLLEHGYAVYFEDFSCKILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSEV 452
Query: 448 NNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTT 507
+ D LWH GHLNY +L L K M+ +P + + + + GKQ R +F +
Sbjct: 453 DISD--LWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGA 510
Query: 508 HRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKF 567
R+ L +V+ D+ G + S G YFI+F+D++++ IWV +K KS A +IF+KFK
Sbjct: 511 WRASAPLELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKA 570
Query: 568 FVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
VE QS + I LR+D G EY K FEK+CE G+
Sbjct: 571 MVENQSNRKIKVLRSDQGREYISKEFEKYCENAGI 605
Score = 43.5 bits (101), Expect = 0.020
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 6 LPTLESGNWESWSVVMKNLFGAKDLFNIVQNGYDE--LGENPTEMHRNAYKELKKKDCKT 63
+P N++ WS+ M+ L ++ L++IV+NGY E GE T + + E + D K
Sbjct: 6 VPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKA 65
Query: 64 LFFI 67
LF I
Sbjct: 66 LFLI 69
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana] gi|25301683|pir||E86451 probable copia-type
polyprotein, 28768-32772 [imported] - Arabidopsis
thaliana
Length = 1334
Score = 143 bits (360), Expect = 2e-32
Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 15/225 (6%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAK------LN 441
NL SVGQL QKG ++ + +++ K + R+VM + + KN+ F V K
Sbjct: 364 NLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETR 423
Query: 442 CLSAI--VNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHK--FYDTRLIGKQ 497
CL I NN +WH FGHLN+ L L +KEM+ +PK D+ + D L GKQ
Sbjct: 424 CLQVIGKANN----MWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQ 479
Query: 498 PRTAFISTTTHRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSG 557
R + + +S +VL +V+ D+ GP+ S +Y ++F+D+FS+ W L+ KS
Sbjct: 480 IRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSE 539
Query: 558 AFDIFQKFKFFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
F F++FK VE++SGK + LR+D GGEY + F+++C+E G+
Sbjct: 540 TFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGI 584
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 143 bits (360), Expect = 2e-32
Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 15/225 (6%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAK------LN 441
NL SVGQL QKG ++ + +++ K + R+VM + + KN+ F V K
Sbjct: 364 NLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETR 423
Query: 442 CLSAI--VNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHK--FYDTRLIGKQ 497
CL I NN +WH FGHLN+ L L +KEM+ +PK D+ + D L GKQ
Sbjct: 424 CLQVIGKANN----MWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQ 479
Query: 498 PRTAFISTTTHRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSG 557
R + + +S +VL +V+ D+ GP+ S +Y ++F+D+FS+ W L+ KS
Sbjct: 480 IRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSE 539
Query: 558 AFDIFQKFKFFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
F F++FK VE++SGK + LR+D GGEY + F+++C+E G+
Sbjct: 540 TFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGI 584
>gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 143 bits (360), Expect = 2e-32
Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 15/225 (6%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQ-RLVMKTPLAKNKTF*TDMKVAK------LN 441
NL SVGQL QKG ++ + +++ K + R+VM + + KN+ F V K
Sbjct: 269 NLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETR 328
Query: 442 CLSAI--VNNEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHK--FYDTRLIGKQ 497
CL I NN +WH FGHLN+ L L +KEM+ +PK D+ + D L GKQ
Sbjct: 329 CLQVIGKANN----MWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQ 384
Query: 498 PRTAFISTTTHRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSG 557
R + + +S +VL +V+ D+ GP+ S +Y ++F+D+FS+ W L+ KS
Sbjct: 385 IRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSE 444
Query: 558 AFDIFQKFKFFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
F F++FK VE++SGK + LR+D GGEY + F+++C+E G+
Sbjct: 445 TFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGI 489
>gb|AAM15219.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 767
Score = 139 bits (349), Expect = 3e-31
Identities = 72/214 (33%), Positives = 119/214 (54%), Gaps = 1/214 (0%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
N++S+GQ + G I +KD L + D+ +L++K ++N + M + K CL + +
Sbjct: 137 NIISLGQATESGCEIKLKDGYLTMHDQEGKLLVKAERSRNSLYKVKMGLRKEACLY-LTS 195
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
S LWH GH++ I+L ++DKE+I P L I + + L+GKQ R +F T
Sbjct: 196 TSMSSLWHARMGHVSLITLKSMIDKELIQGAPSLVIESEVCGSCLLGKQTRQSFPQATVF 255
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+ + L +++ D+ GP+ + +Y +D++S+ +W L+K K AF F+ FK
Sbjct: 256 RATKKLELIHGDLCGPITPKTSVGNRYIFVLIDDYSRYMWTVLLKEKGDAFFKFKNFKAL 315
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
VEK+SG+ I + TD GGE+ F FCE G+
Sbjct: 316 VEKESGEKIQTFITDRGGEFVSGEFNSFCERTGI 349
>ref|NP_910533.1| EST D24315(R1718) corresponds to a region of the predicted
gene.~Similar to Tobacco DNA for retroviral-like
transposon Tnt 1-94.(X13777) [Oryza sativa (japonica
cultivar-group)]
Length = 1600
Score = 139 bits (349), Expect = 3e-31
Identities = 69/214 (32%), Positives = 126/214 (58%), Gaps = 1/214 (0%)
Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMKVAKLNCLSAIVN 448
+++SVGQL + G + ++D ++++D+ +RL+ K N+ + +VA+ CL+A
Sbjct: 578 SIISVGQLDENGSRVLVEDGLMRIWDRRRRLLAKVTRGTNRLYILSAQVAQPVCLAAR-R 636
Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
++++W WH FGHL++ +L L KEM+ +P LD + D ++ KQ R F T+
Sbjct: 637 DDEAWQWHERFGHLHFEALKRLSAKEMVRGMPCLDHVEQLCDVCVVTKQRRLPFPQQTSF 696
Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFKFF 568
R+KE L +V+ D+ GP+ + G +YF+ +D+ S+ +WV ++ +K A D ++ +
Sbjct: 697 RAKERLKLVHGDLCGPVTPATPGGRRYFLLLVDDLSRYMWVMVLGSKGEAADAIRRAQAA 756
Query: 569 VEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
E + G+ + LRTD GGE+T F +C + G+
Sbjct: 757 AEAECGRKLRVLRTDNGGEFTAAEFASYCADEGI 790
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.349 0.155 0.516
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 864,141,949
Number of Sequences: 2540612
Number of extensions: 32015540
Number of successful extensions: 123709
Number of sequences better than 10.0: 646
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 122454
Number of HSP's gapped (non-prelim): 832
length of query: 604
length of database: 863,360,394
effective HSP length: 134
effective length of query: 470
effective length of database: 522,918,386
effective search space: 245771641420
effective search space used: 245771641420
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 78 (34.7 bits)
Medicago: description of AC145061.22