BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145024.28 - phase: 0
(1155 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 545 e-153
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 544 e-153
gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum] 537 e-151
gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum... 221 8e-56
gb|AAT39964.1| putative gag polyprotein [Solanum demissum] 138 1e-30
emb|CAD41628.3| OSJNBa0091D06.8 [Oryza sativa (japonica cultivar... 136 5e-30
gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum] 127 2e-27
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 115 7e-24
gb|AAT39963.1| putative polyprotein [Solanum demissum] 111 2e-22
pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB5... 105 1e-20
emb|CAC44143.1| putative gag polyprotein [Cicer arietinum] 103 3e-20
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi... 80 4e-13
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 79 7e-13
gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativ... 78 2e-12
ref|XP_468901.1| putative reverse transcriptase [Oryza sativa (j... 77 3e-12
ref|XP_474437.1| OSJNBa0070M12.15 [Oryza sativa (japonica cultiv... 75 1e-11
emb|CAB77873.1| putative transposon protein [Arabidopsis thalian... 75 2e-11
gb|AAV44059.1| hypothetical protein [Oryza sativa (japonica cult... 74 3e-11
emb|CAB79049.1| putative protein [Arabidopsis thaliana] gi|52621... 73 5e-11
gb|AAX94889.1| retrotransposon protein, putative, unclassified [... 73 6e-11
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 545 bits (1404), Expect = e-153
Identities = 393/1126 (34%), Positives = 583/1126 (50%), Gaps = 160/1126 (14%)
Query: 112 PWGMPIATNGVFGPGATEMP---FAQGQQTSAHFQMSQPI-PQATMTQA--GPTVHVGP- 164
P G P+ N V A +P +A G + QPI P +A P + P
Sbjct: 51 PEGGPVNGNNV----AAAVPINNYAVGDELGGIRINGQPIAPDVANARAVRAPARNPAPI 106
Query: 165 -QHEEQIYHSDSIMGDDKAI-----DWEERFGALEKKMSNMRGKEAVVQSIYDLCLVPDV 218
+E ++ S++ +D+ + + + + AL +K+ M + ++ + ++ LV +
Sbjct: 107 VDRQEDMF---SLLSEDEDVLGRVDERDRKVDALAEKIRAMECQNSLGFDVTNMGLVEGL 163
Query: 219 NIPPKFKMPVFEKYQGDTCPQNHLTMYISKMIAYKNNVPLLIHCFQDSLTGPAHTWFMGL 278
IP KFK P F+KY G +CP+ H+ Y K+ AY ++ + ++ FQDSL+G + W+M L
Sbjct: 164 RIPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMEL 223
Query: 279 K--GVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFKEYAQRFIQKAAQIRPP 336
K + ++ L EAF++QYK+N +APSR +LQSL QK ESFKEYAQR+ + AA+++PP
Sbjct: 224 KRDSIRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPP 283
Query: 337 LDERELSDLFYETLSPCYSEKMIVCASQKFTDLVETGMRIEEWARKGAAVSGSSSGGSSG 396
+ EREL+D+F TL + ++M C F+D+V G R E + G SS
Sbjct: 284 MLERELTDMFIGTLQGVFMDRMGSCPFVSFSDVVICGERTESLIKTGKIQDAGSS----- 338
Query: 397 VSSSGNKKFGNGYPKRNAQEVGMVAHGGPQPVYSNHPFVANITPQMTAPQNPNYQSPRPQ 456
S K F G P+R E V + Q S VA +T
Sbjct: 339 ---SSKKPFA-GAPRRREGETNAVQYRRDQN-RSQRCQVAAVTI---------------- 377
Query: 457 GPAPYYPPLYQPLYNLQQLSQQPYYPQQPYQQRPYNPPQQQPRPQAPYNQQNQKQQFDPL 516
PAP QP QQ QQP QQ QQRPY P Q+ P ++FD L
Sbjct: 378 -PAP------QPRQQQQQRVQQPQQQQQ--QQRPYQPRQRMP-----------DRRFDSL 417
Query: 517 PMTYGALLPSLLAQNLVQ--TIPPPRIPDPLPRWYRPDLHCIYHQGAPGHDVERCFALKK 574
PM+Y LLP LL +V+ T+ PP + LP Y ++ C +H GAPGH E+C AL+
Sbjct: 418 PMSYAELLPELLRLGMVELRTMAPPTV---LPPGYDANVRCDFHSGAPGHHTEKCRALQH 474
Query: 575 EVQKLINSKELTFTDPDAVAQNNPLPTHGP-AVNMIQDDQEEARILSVGDIKTPLVPIHV 633
+VQ LI++K + F V NNP+P HG VN I+ + E +++V D++T L+ +
Sbjct: 475 KVQDLIDAKAINFAPVPNVV-NNPMPQHGGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKG 533
Query: 634 KMCKATLFNHNHEACDICLMDPRGCIQVQNDMQGLLNRRELVVTREPESKD-VCVVTPVF 692
++ +++ E C C GC Q++ +QG+++ L +R + + V +T F
Sbjct: 534 RLLNGGVYSGCDEDCLGCAESENGCDQLRTGIQGMMDEGCLQFSRAVKDRGTVSTITIYF 593
Query: 693 R---ARRPLVINPNSTKPVGTPLVICVP----RPTPTTAQ--------KAVPYKYEGTIL 737
+ R V++ +T GTP+ I VP PT A +AVP+KY+
Sbjct: 594 KPSEGRGQRVVSAPATN--GTPVTISVPVTISAPTTIAASGRRAVENSRAVPWKYDNAYR 651
Query: 738 EP--GSETTSPV-------------------VVDNIAENSRILRSGRIFPTVGPKSVSVP 776
T PV VDN+ RSGR+F
Sbjct: 652 SNRRAESQTRPVNQAPVTIGLPNRVPATVGPAVDNVGGPGGFTRSGRLF----------- 700
Query: 777 VDEPVKERNA-----GKGKAG--------EQAKEFDFE-DADEVLKLIKKSEYRVVDQLL 822
+P+++ NA KGK ++A E FE D +E +K+IKKS+Y++VDQL
Sbjct: 701 APQPLRDNNAEALAKAKGKQAVVEEEPVQKEAPEGSFEKDVEEFMKIIKKSDYKIVDQLN 760
Query: 823 QTPAKISIMALLSSSGAHRDALRKVLDQAFVDYDVTLGQFESIVGNVTACNSLTFSDEDL 882
QTP+KISI++LL S AHR+AL K+L+ A+V ++++ Q E ++ NV+ + + F++ DL
Sbjct: 761 QTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGFTNLDL 820
Query: 883 PAEGNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRA 942
EG HN+AL I++ C+ LS+VL+DTGS+LNV+PK L ++ L S + VRA
Sbjct: 821 TPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPSDLIVRA 880
Query: 943 FDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLK 1002
FDG++RSV GEV LP+ +GP F + F VM+IQ ++SCLLGRPWIH AGAV+STLHQKLK
Sbjct: 881 FDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQKLK 940
Query: 1003 FVSRGKLITVSGESAFLISNLSAFSVIGGSSSDGPSF-QGFS--AEESVGKIE-----TC 1054
+V G+++TV GE L+S+LS+F + + Q F A E V E
Sbjct: 941 YVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQRKPGAS 1000
Query: 1055 MASLKDARRVIQEGKTGGWGQLVELPENKRKEGIGF---LNSKPGMFDPTRGSFHSAGFI 1111
+ S K A+ V+ GK GWG++V LP + K G+G+ + G P+ +F SAG +
Sbjct: 1001 ITSYKQAKEVVDSGKAEGWGKMVYLPVKEDKFGVGYEPLQAEQNGQAGPS--TFTSAGLM 1058
Query: 1112 -HDSPETNAILD-----DAPGGVTPVFVTPGGACCNWIAVDIPSVT 1151
H D D V P PGG+ NW A ++ VT
Sbjct: 1059 NHGDVSATGSEDCDSDCDLDNWVRP--CAPGGSINNWTAEEVVQVT 1102
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 544 bits (1401), Expect = e-153
Identities = 367/1040 (35%), Positives = 546/1040 (52%), Gaps = 143/1040 (13%)
Query: 186 EERFGALEKKMSNMRGKEAVVQSIYDLCLVPDVNIPPKFKMPVFEKYQGDTCPQNHLTMY 245
+ + AL +K+ M + ++ + ++ LV + IP KFK P F+KY G +CP+ H+ Y
Sbjct: 130 DRKVDALAEKIRAMECQNSLGFDVTNMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHVQAY 189
Query: 246 ISKMIAYKNNVPLLIHCFQDSLTGPAHTWFMGLKG--VTTFEQLAEAFMQQYKYNTYLAP 303
K+ AY ++ + ++ FQDSL+G + W+M LK + + L EAF++QYK+N +AP
Sbjct: 190 YRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRCWRDLGEAFLRQYKHNMDMAP 249
Query: 304 SRKELQSLTQKDKESFKEYAQRFIQKAAQIRPPLDERELSDLFYETLSPCYSEKMIVCAS 363
SR +LQSL QK ESFKEYAQR+ + AA+++PP+ EREL+D+F TL + ++M C
Sbjct: 250 SRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSCPF 309
Query: 364 QKFTDLVETGMRIEEWARKGAAVSGSSSGGSSGVSSSGNKKFGNGYPKRNAQEVGMVAHG 423
F+D+V G R E + +G V SS +KK G P+R E V H
Sbjct: 310 GSFSDVVICGERTESLIK---------TGKIQDVGSSSSKKPFAGAPRRREGETNAVQHR 360
Query: 424 GPQPVYSNHPFVANITPQMTAPQNPNYQSPRPQGPAPYYPPLYQPLYNLQQLSQQPYYPQ 483
Q A P APQ PR QQ Q+ PQ
Sbjct: 361 RDQNRIEYRQAAAVTIP---APQ------PR------------------QQQQQRVQQPQ 393
Query: 484 QPYQQRPYNPPQQQPRPQAPYNQQNQKQQFDPLPMTYGALLPSLLAQNLVQ--TIPPPRI 541
Q QQRPY P Q+ P ++FD LPM+Y LLP LL LV+ T+ PP +
Sbjct: 394 QQQQQRPYQPRQRMP-----------DRRFDSLPMSYAELLPELLRLGLVELCTMAPPTV 442
Query: 542 PDPLPRWYRPDLHCIYHQGAPGHDVERCFALKKEVQKLINSKELTFTDPDAVAQNNPLPT 601
LP Y ++ C +H GAPGH E+C AL+ +VQ LI++ + F P NNP+P
Sbjct: 443 ---LPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDANAINFA-PVPNVVNNPMPQ 498
Query: 602 H-GPAVNMIQDDQEEARILSVGDIKTPLVPIHVKMCKATLFNHNHEACDICLMDPRGCIQ 660
H G VN I+ + E + +V D++T L+ + ++ +++ E C C GC Q
Sbjct: 499 HGGHRVNNIEGKEAEDLVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESENGCDQ 558
Query: 661 VQNDMQGLLNRRELVVTREPESK-DVCVVTPVFR-----ARRPLVINPNSTKPVGTPLVI 714
++ +QG+++ L +R + + V +T F+ +R + + PV P+ +
Sbjct: 559 LRAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGHGQRVVSAPATNGTPVTIPVPV 618
Query: 715 CVPRPTPTTA--------QKAVPYKYEGTI---------LEPGSET------------TS 745
+ PT A +AVP+KY+ +P ++T T
Sbjct: 619 TISAPTTIVASGRRAVENSRAVPWKYDNAYRSNRRVESQTKPVNQTPVTIGLANRVPATV 678
Query: 746 PVVVDNIAENSRILRSGRIFPTVGPKSVSVPVDEPVKERNA-----GKGKAG-------- 792
VDN+ RSGR+F +P+++ NA KGK
Sbjct: 679 GPAVDNVGGPGGFTRSGRLF-----------APQPLRDNNAEALAKAKGKQAVVEEEPVQ 727
Query: 793 EQAKEFDFE-DADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSSGAHRDALRKVLDQA 851
++A E FE D +E +K+IKKS+Y++VDQL QTP+KISI++LL S AHR+AL K+L+ A
Sbjct: 728 KEAPEGSFEKDVEEFMKMIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLA 787
Query: 852 FVDYDVTLGQFESIVGNVTACNSLTFSDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDT 911
+V ++++ Q E ++ NV+ + + F++ DLP EG HN+AL I++ C+ LS+VL+DT
Sbjct: 788 YVPQEISVNQLEGVMANVSTRHGVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDT 847
Query: 912 GSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQV 971
GS+LNV+PK L ++ L S + VRAFD ++RSV GEV LP+ +GP F + F V
Sbjct: 848 GSSLNVLPKQILKKIDVEGFVLTPSDLIVRAFDRSKRSVCGEVTLPVKIGPEVFDIIFYV 907
Query: 972 MEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSRGKLITVSGESAFLISNLSAFSVIGG 1031
M+IQ ++SCLLGRPWIH AGAV+STLHQKLK+V G+++TV GE L+S+LS+F +
Sbjct: 908 MDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYV-- 965
Query: 1032 SSSDGPSFQGFS------AEESVGKIE-----TCMASLKDARRVIQEGKTGGWGQLVELP 1080
DG + A E V E + S K A+ V+ GK GWG++V+LP
Sbjct: 966 -EVDGEIHETLCQVFETVALEKVAYAEQRKPGVSITSYKQAKEVVDSGKAEGWGKMVDLP 1024
Query: 1081 ENKRKEGIGF---LNSKPGMFDPTRGSFHSAGFI-HDSPETNAILD-----DAPGGVTPV 1131
+ K G+G+ + G P+ +F SAG + H D D V P
Sbjct: 1025 VKEDKFGVGYEPLQAEQNGQAGPS--TFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRP- 1081
Query: 1132 FVTPGGACCNWIAVDIPSVT 1151
PGG+ NW A ++ VT
Sbjct: 1082 -CAPGGSINNWTAEEVVQVT 1100
>gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 537 bits (1383), Expect = e-151
Identities = 360/1035 (34%), Positives = 541/1035 (51%), Gaps = 132/1035 (12%)
Query: 186 EERFGALEKKMSNMRGKEAVVQSIYDLCLVPDVNIPPKFKMPVFEKYQGDTCPQNHLTMY 245
+ + AL +K+ M + ++ + ++ LV + IP KFK P F+KY +CP+ H+ Y
Sbjct: 131 DRKVDALAEKIRAMECQNSLSFDVTNMGLVEGLRIPYKFKAPSFDKYNDTSCPRTHVQAY 190
Query: 246 ISKMIAYKNNVPLLIHCFQDSLTGPAHTWFMGLK--GVTTFEQLAEAFMQQYKYNTYLAP 303
K+ AY ++ + ++ FQDSL+G + W+M LK + + L EAF++QYK+N +AP
Sbjct: 191 YRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRDSIRCWRDLGEAFLRQYKHNMDMAP 250
Query: 304 SRKELQSLTQKDKESFKEYAQRFIQKAAQIRPPLDERELSDLFYETLSPCYSEKMIVCAS 363
SR +LQSL QK ESFKEYAQR+ + AA+++PP+ EREL+D+F TL + ++M C
Sbjct: 251 SRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSCPF 310
Query: 364 QKFTDLVETGMRIEEWARKGAAVSGSSSGGSSGVSSSGNKKFGNGYPKRNAQEVGMVAHG 423
F+D+V G R E + +G V SS +KK G P+R E +V H
Sbjct: 311 GSFSDVVICGERTESLIK---------TGKIQDVGSSSSKKPFAGAPRRREGETNVVQHR 361
Query: 424 GPQPVYSNHPFVANITPQMTAPQNPNYQSPRPQGPAPYYPPLYQPLYNLQQLSQQPYYPQ 483
Q Q+ PAP QP QQ QQP Q
Sbjct: 362 RDQNRIEYR------------------QAAAVTIPAP------QPRQQQQQRVQQP--QQ 395
Query: 484 QPYQQRPYNPPQQQPRPQAPYNQQNQKQQFDPLPMTYGALLPSLLAQNLVQ--TIPPPRI 541
Q QQRPY P Q+ P ++FD LPM+Y LLP LL +V+ T+ PP +
Sbjct: 396 QQQQQRPYQPRQRMP-----------DRRFDSLPMSYAELLPELLRLGMVELRTMAPPTV 444
Query: 542 PDPLPRWYRPDLHCIYHQGAPGHDVERCFALKKEVQKLINSKELTFTDPDAVAQNNPLPT 601
LP Y ++ C +H GAPGH E+C AL+ +VQ LI++K + F P NNP+P
Sbjct: 445 ---LPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDAKAINFA-PVPNVVNNPMPQ 500
Query: 602 H-GPAVNMIQDDQEEARILSVGDIKTPLVPIHVKMCKATLFNHNHEACDICLMDPRGCIQ 660
H G VN I+ + E +++V D++T L+ + ++ +++ E C C GC Q
Sbjct: 501 HGGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQ 560
Query: 661 VQNDMQGLLNRRELVVTREPESK-DVCVVTPVF-----RARRPLVINPNSTKPVGTPLVI 714
++ +QG+++ L +R + + V +T F R +R + + PV + +
Sbjct: 561 LRAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPTEGRGQRVVSAPATNDTPVTISVPV 620
Query: 715 CVPRPTPTTA--------QKAVPYKYEGTIL--EPGSETTSPV----------------- 747
+ PT A + VP+KY+ T PV
Sbjct: 621 TISAPTTIVASGRRAVENSRVVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPATV 680
Query: 748 --VVDNIAENSRILRSGRIFPTVGPKSVSVPVDEPVKERNA-----GKGKAG-------- 792
VDN+ RSGR+F +P+++ NA KGK
Sbjct: 681 GPAVDNVGGPGGFTRSGRLF-----------APQPLRDNNAEALAKAKGKQAVVEEEPVQ 729
Query: 793 EQAKEFDFE-DADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSSGAHRDALRKVLDQA 851
++A E FE D +E +K+IKKS+Y++VDQL QTP+KISI++LL S AHR+AL K+L+ A
Sbjct: 730 KEAPEGTFEKDVEEFMKIIKKSDYKIVDQLNQTPSKISILSLLMCSEAHRNALLKMLNLA 789
Query: 852 FVDYDVTLGQFESIVGNVTACNSLTFSDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDT 911
+V ++++ Q E ++ NV+ + + F++ DLP EG HN+AL I++ C+ LS+VL+DT
Sbjct: 790 YVPQEISVNQLEGVMANVSTRHGVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDT 849
Query: 912 GSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQV 971
GS+LNV+P L ++ L S + VRAFDG++RSV GEV LP+ +GP F + F V
Sbjct: 850 GSSLNVLPNQILKKIDVEGFVLTPSDLIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYV 909
Query: 972 MEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSRGKLITVSGESAFLISNLSAFSVIGG 1031
M+IQ ++SCLLGRPWIH AGAV+STLHQKLK+V G+++TV GE L+S+LS+F +
Sbjct: 910 MDIQPAYSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEV 969
Query: 1032 SSSDGPSF-QGFS--AEESVGKIE-----TCMASLKDARRVIQEGKTGGWGQLVELPENK 1083
+ Q F A E V E + S K A+ V+ GK GWG++V+LP +
Sbjct: 970 DGEIHETLCQAFETVALEKVAYAEQRKPGASITSYKQAKEVVDSGKAEGWGKMVDLPVKE 1029
Query: 1084 RKEGIGF---LNSKPGMFDPTRGSFHSAGFIHDSPETNAILDDAPGGVT----PVFVTPG 1136
K G+G+ + G P+ +F SAG ++ + +D PG
Sbjct: 1030 DKFGVGYEPLRAEQNGQAGPS--TFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRSCAPG 1087
Query: 1137 GACCNWIAVDIPSVT 1151
+ NW A ++ VT
Sbjct: 1088 ESINNWTAEEVVQVT 1102
>gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 221 bits (564), Expect = 8e-56
Identities = 179/598 (29%), Positives = 281/598 (46%), Gaps = 111/598 (18%)
Query: 510 KQQFDPLPMTYGALLPSLLAQNLVQTIPPPRIPDPLPRWYRPDLHCIYHQGAPGHDVERC 569
K +F P+ +Y +L L N++ I ++ +P PR HC Y APGH++ERC
Sbjct: 889 KDEFTPIGESYASLFQKLRTLNVLSPIER-KMSNPPPRNLDYSQHCAYCSDAPGHNIERC 947
Query: 570 FALKKEVQKLINSKELTFTDPDAVAQN-NPLPTHGPAVNMIQ--DDQEEARILSVGDIKT 626
+ LKK +Q LI+++ + P+ N NPLP H NM++ ++ EE +
Sbjct: 948 WYLKKAIQDLIDTRRIIVESPNGPNINQNPLPRH-TETNMLEMVNNHEEVAVPY-----K 1001
Query: 627 PLVPIHVKMCKATLFNHNHEACDICLMDPRGCIQVQNDM----------QGLL-----NR 671
P++ + M +T D+ + P G + +G L ++
Sbjct: 1002 PILKVETGMESST------NVIDLTKIMPSGAESTSEKLTPSSAPILTIKGALEDVWASQ 1055
Query: 672 RE--LVVTREPESKDVCVVTPVFRARRPLVINPNSTKPVGTPLVICVPRPTPTTAQKAVP 729
RE LVV R P+ K + +V + P++I P S P+ P KAVP
Sbjct: 1056 REARLVVPRGPD-KPILIVQGAYIP--PVIIRPVSQLPMTNP--------------KAVP 1098
Query: 730 YKYEGTILE-PGSETTSPVVVDNIAENSRILRSGRIFPTVG---PKSVSVPVDEPVKERN 785
+ YE T++ G E + + + E + RSGR + K+ + V PV E
Sbjct: 1099 WNYEPTVVTYEGKE-----INEEVDEIGGMTRSGRCYALTELRKNKNDQMQVKSPVTEG- 1152
Query: 786 AGKGKAGEQAKEFDFEDADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSSGAHRDALR 845
+A+E L+ +K S+Y +V+QL +TPA+IS+++LL S AHR A+
Sbjct: 1153 ----------------EAEEFLRKMKLSDYSIVEQLRKTPAQISLLSLLIHSDAHRKAVI 1196
Query: 846 KVLDQAFVDYDVTLGQFESIVGNVTACNSLTFSDEDLPAEGNKHNQALLISVLCRTDSLS 905
K+L++A V +VT+ Q E I G + N +TFSD++LP EG
Sbjct: 1197 KILNEAHVPNEVTVSQLEKIAGRIFEVNRITFSDDELPVEG------------------- 1237
Query: 906 NVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEVDLPISVGPHEF 965
S N+ P STL +L + +R + V VRAFDGT+ GE++L + +G +F
Sbjct: 1238 -------SGANICPLSTLQKLNVNVERVRPNNVCVRAFDGTKTDAIGEIELILKIGHVDF 1290
Query: 966 QVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSRGKLITVSGESAFLISNLSA 1025
V FQV+ I AS++ LLGRPW+H AGAV STLHQ +KF + + V E + S+
Sbjct: 1291 TVNFQVLNINASYNLLLGRPWVHRAGAVPSTLHQMVKFEYDRQEVIVHSEGDLSVYKDSS 1350
Query: 1026 FSVI-GGSSSDGPSFQGFSA--------EESVGKIETCMASLKDARRVIQEGKTGGWG 1074
I + ++ +Q F + K + MAS+ +++ G G G
Sbjct: 1351 LPFIKANNENEALVYQAFEVVVVEHILEGNLISKPQLPMASVMMVNEMLKHGFEPGKG 1408
Score = 94.7 bits (234), Expect = 2e-17
Identities = 91/397 (22%), Positives = 163/397 (40%), Gaps = 75/397 (18%)
Query: 36 REQAAISNSTPVVVVTAAPEGPPQPSPTTTTT----IGLTQPLITDFSSGNMATMGNSGF 91
RE + P+ V T P PP SP T T+ +PL N M N F
Sbjct: 557 REYLNANMPFPIQVSTNDPIYPPGFSPYTNTSNVAETSTVRPL-------NTPMMSNPLF 609
Query: 92 RPLGPQGPFATPQYSMPSGY-PWGMPIATNGVFGPGATEMP--FAQGQQTSAHFQMSQPI 148
P P + P S P + +G A ++P + Q Q S+ F++ + +
Sbjct: 610 VPTAPTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEALKIPSSYPQTHQYSSPFKIEKTV 669
Query: 149 PQATMTQAGPTVHVGPQHEEQIYHSDSIMGDDKAIDWEERFGALEKKMSNMRGKEAVVQS 208
+HEE S+ +++I + M + G + + S
Sbjct: 670 KNE-------------EHEEMAKKMKSL---EQSI----------RDMQGLGGHKGI--S 701
Query: 209 IYDLCLVPDVNIPPKFKMPVFEKYQGDTCPQNHLTMYISKMIAYKNNVPLLIHCFQDSLT 268
DLC+ P V++P + LL+ F +SL
Sbjct: 702 FSDLCMFPHVHLPT----------------------------GAEGKEELLMAYFGESLV 733
Query: 269 GPAHTWFMG--LKGVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFKEYAQRF 326
G A WF+ + T++ LA F+QQ++YN + P R L ++ +K E+F+EYA R+
Sbjct: 734 GIASEWFIDQDIANWHTWDNLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRW 793
Query: 327 IQKAAQIRPPLDERELSDLFYETLSPCYSEKMIVCASQKFTDLVETGMRIEEWARKGAAV 386
++AA+++ + E E+ D+F + P Y ++ + F ++++ G +E + G V
Sbjct: 794 REQAARVKLSMKESEMIDVFLQAQEPDYFHYLLSAVGKTFVEVIKVGEMVENGIKSGKIV 853
Query: 387 SGSSSGGSSGVSSSGNKKFGNGYPKRNAQEVGMVAHG 423
S ++ ++ +G+ G K+ ++V V +G
Sbjct: 854 SQAALKATTQALQNGSGNIGG---KKRREDVATVGNG 887
>gb|AAT39964.1| putative gag polyprotein [Solanum demissum]
Length = 421
Score = 138 bits (347), Expect = 1e-30
Identities = 112/429 (26%), Positives = 186/429 (43%), Gaps = 53/429 (12%)
Query: 36 REQAAISNSTPVVVVTAAPEGPPQPSPTTTTT----IGLTQPLITDFSSGNMATMGNSGF 91
RE ++ P+ V T PP P T T+ +PL N M N F
Sbjct: 37 REYLNVNMPFPIQVSTNDLIYPPGFGPYTNTSNVAETSTVRPL-------NTPMMSNPLF 89
Query: 92 RPLGPQGPFATPQYSMPSGY-PWGMPIATNGVFGPGATEMP--FAQGQQTSAHFQMSQPI 148
P P + P S P + +G A ++P + Q Q S+ F++ + +
Sbjct: 90 VPTAPTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEALKIPSSYPQTHQYSSPFKIEKTV 149
Query: 149 PQATMTQAGPTVHVGPQHEEQIYHSDSIMGDDKAIDWEERFGALEKKMSNMRGKEAVVQS 208
+HEE S+ + +I + M + G + + S
Sbjct: 150 KNE-------------EHEEMTKKMKSL---EHSI----------RDMQGLGGHKGI--S 181
Query: 209 IYDLCLVPDVNIPPKFKMPVFEKYQGDTCPQNHLTMYISKMIAYKNNVPLLIHCFQDSLT 268
DLC+ P V++P FK P FEKY G P HL Y +++ + LL+ F +SL
Sbjct: 182 FSDLCMFPHVHLPTGFKTPNFEKYDGHGDPIAHLKRYYNQLRGAEGKEELLMAYFGESLV 241
Query: 269 GPAHTWFMG--LKGVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFKEYAQRF 326
G A WF+ + T++ LA F+QQ++YN + P R L ++ +K E+F+EYA R+
Sbjct: 242 GIASKWFIDQDIANWHTWDDLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRW 301
Query: 327 IQKAAQIRPPLDERELSDLFYETLSPCYSEKMIVCASQKFTDLVETGMRIEEWARKGAAV 386
++AA+++PP+ E E+ D+F + P Y ++ + FT++++ G +E + G V
Sbjct: 302 REQAARVKPPMKELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVENGIKSGKIV 361
Query: 387 SGSSSGGSSGVSSSGNKKFGNGYPKRNAQEVGMVAHGGPQPVYSNHPFVANITPQMTAPQ 446
S ++ ++ +G+ G K+ ++V V NH T PQ
Sbjct: 362 SQAALKATTQALPNGSGNIGG---KKRREDVATVVSAPRTYAQDNH------TQHYFPPQ 412
Query: 447 NPNYQSPRP 455
P Y P P
Sbjct: 413 IPQYLVPYP 421
>emb|CAD41628.3| OSJNBa0091D06.8 [Oryza sativa (japonica cultivar-group)]
gi|50926818|ref|XP_473330.1| OSJNBa0091D06.8 [Oryza
sativa (japonica cultivar-group)]
Length = 2657
Score = 136 bits (342), Expect = 5e-30
Identities = 235/984 (23%), Positives = 371/984 (36%), Gaps = 211/984 (21%)
Query: 203 EAVVQSIYDLCLVPDVNIPPKFKMPVFEKYQGDTCPQNHLTMYISKMIAYKNNVPLLIHC 262
E ++ +DL P PPKF+ F++ GD + HL + + NN LL+
Sbjct: 832 EKPYEAWHDLVAFPARWHPPKFRQ--FDR-TGDA--REHLAYFEAACGDTANNSSLLLRQ 886
Query: 263 FQDSLTGPAHTWFMGLKGVTTFEQLAEAFMQQYKYNTYLAPSRK----ELQSLTQKDKES 318
F SLTGPA W+ L T + A M++ ++A + EL + Q+ E+
Sbjct: 887 FSGSLTGPAFHWYSRL---PTGSIRSWASMKEVLKKHFVAMKKDFSIVELSQVRQRRDEA 943
Query: 319 FKEYAQRFIQKAAQIRPPLDERELSDLFYETLSPCYSEKMIVCASQKFTDLVETGMRIEE 378
+Y RF ++ E L D LS + +F E +I E
Sbjct: 944 IDDYVIRFRNSFVRL---AREMHLEDAIEIALS-----SAVAATKLEF----ENSPQIME 991
Query: 379 WARKGAAVSGSSSGGSSGVSSSGNKKFGNGYPKRNAQEVGMVAHGGPQPVYSNHPFVANI 438
+ +A + ++ S G+K PK A+ AN+
Sbjct: 992 LYKNASAFDPAKHFSATKPSGGGSK------PKAPAE--------------------ANV 1025
Query: 439 TPQMTAPQNPNYQSPRPQGPAPYYPPLYQPLYNLQQLSQQPYYPQQPYQQRPYNPPQQQP 498
S PQG P L ++Q Q+P Q
Sbjct: 1026 A---------RVFSTAPQGQVPM----------LGAKNEQARGRQRP-------SIQDLL 1059
Query: 499 RPQAPYNQQNQKQQFDPLPMTYGALLPSLLAQNLVQTIPPPRIPDPLPRWYRPDLHCIYH 558
+ Q + ++ K F+ L ++ +P P PD + P L+C YH
Sbjct: 1060 KKQYIFRRELVKDMFNQL------------KEHRALNLPEPWRPDQVTMVDNP-LYCPYH 1106
Query: 559 QGAPGHDVERCFALKKEVQKLINSKELTFTDPDAVAQNNPLPTHGPAVNMIQDDQEEARI 618
+ G+ +E C A K+ +Q+ +N K + D DA+ NP AVNM+ + +R
Sbjct: 1107 RYV-GYAIEDCVAFKEWLQRAVNEKRINL-DADAI---NP---DYRAVNMV-SVEPGSRE 1157
Query: 619 LSVGDIKTPLVPIHVKMCKATLFNHNHEACDICLMDPRGCIQVQND----MQGLLNRREL 674
DI PL + ++ + L P +V +D M + RR
Sbjct: 1158 QEGADIWVPLNQVEHQIARMML-----------TTTPAAHREVTHDTNKKMWNTVRRRPQ 1206
Query: 675 VV---TREPESKDVCVVTPV-------FRARRPLVINPNSTKPVGTPLVICVPRPTPTTA 724
R P+ K P R R P P S P R PT
Sbjct: 1207 FTGPPPRHPQMKPQPRTAPTTRRWPDPSRRRLPPCFVPFSKGDESFPR---QGRELPTLV 1263
Query: 725 Q-------KAVPYKYEGTILEPGSETTSPVVVDNIAENSRIL--------RSGRIFPTVG 769
Q +A P + GS T VV N+A + +L S +F T
Sbjct: 1264 QFLPKNWGQASPISTKEAEEVAGSTPTPDVVSCNVAPCNVVLTYNDTTGASSDDVFTTRE 1323
Query: 770 PKSVSVPVDEPVKERNAGKGKAGEQAKEFDFEDADEVLKLIKKS---------------- 813
+++ D+ E + G+ + +V K IK++
Sbjct: 1324 QETLHAKSDQTRVEEAHMNLRGGKTLPDPHKAKPSKVDKPIKEASPPGEAPETKARSKEK 1383
Query: 814 ---EYRVVDQLLQTPAKISIMALLSSSGAHRDALRKVLDQAFVDYDVTLGQFESIVGNVT 870
+Y V+ L + PA +S+ L R+AL K L V Y+V + + + N
Sbjct: 1384 PDIDYNVLAHLKRIPALLSVYDALILVPDLREALIKALQTPEV-YEVDMAK-HRLFNNPL 1441
Query: 871 ACNSLTFSDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSE 930
N +TF+DED EG+ HN+ L I L +LID GSA+N++P +L + ++
Sbjct: 1442 FVNEITFADEDNIIEGSDHNRPLYIEGNIGPAHLRRILIDPGSAVNILPVRSLTRAGFTT 1501
Query: 931 APLRLSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDA 990
L + + + FD +S G + + I + F+V F V+E S+S LLGRPWIH
Sbjct: 1502 KDLEPTDMVICGFDNQGKSTLGAITVKIQMSTFSFKVHFFVIEANTSYSALLGRPWIHKY 1561
Query: 991 GAVTSTLHQKLKFVSRGKLITVSGESAFLISNLSAFSVIGGSSSDGPSFQGFSAEESVGK 1050
V STLHQ LKF+ GK G ++ N S++++ +D + F EE++ +
Sbjct: 1562 RVVPSTLHQCLKFLD-GK-----GAQQRIVGNSSSYTIQESYHADAKYY--FPVEENMQQ 1613
Query: 1051 -----------IETCMASLKDARRV-------------------IQEGKTG-------GW 1073
I+ A +ARR I+E K G W
Sbjct: 1614 LGRTAPAADVLIQPGTAMTPEARRTPNKEATPTRSGVVKKRVAEIEEAKAGVQSICEDWW 1673
Query: 1074 GQLVELPENKRKE----GIGFLNS 1093
Q + + K KE G+G++N+
Sbjct: 1674 AQAEDFIKRKCKEQPKYGLGYINT 1697
>gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum]
Length = 1716
Score = 127 bits (320), Expect = 2e-27
Identities = 111/444 (25%), Positives = 174/444 (39%), Gaps = 97/444 (21%)
Query: 495 QQQPRPQAPYNQQNQKQQFDPLPMTYGALLPSLLAQNLVQTIPPPRIPDPLPRWYRPDLH 554
Q + RP ++ + F PL + L L + + P + D ++YRPD
Sbjct: 405 QGRSRPSHSSFEKKPARNFTPLIKSRTKLFERLTVAGYIHPVGPKPV-DTSSKFYRPDQR 463
Query: 555 CIYHQGAPGHDVERCFALKKEVQKLINSKELTFTDPDAVAQNNPLPTHGPAVNMIQDDQE 614
C YH + GHD E C LK ++Q LIN ++ L T P VN
Sbjct: 464 CAYHSNSVGHDTEDCINLKHKIQDLINQNVVS------------LQTVAPNVN------- 504
Query: 615 EARILSVGDIKTPLVPIHVKMCKATLFNHNHEACDICLMDPRGCIQVQNDMQGLLNRREL 674
PL NH ++ D C+ +
Sbjct: 505 ----------SNPLP------------NHGGITINMIETDEDWCVM------------KA 530
Query: 675 VVTREPESKDVCVVTPVFRARRPLVINPNSTKPVGTPLVICVPRPTPTTAQKAVPYKYEG 734
+V P+ + V + R ++ VI T +K V
Sbjct: 531 IVLIAPDKLERAVASLSIREKKEFVI---------------------LTPEKVVALVPRE 569
Query: 735 TILEPGSETTSPVVVDNIAENSRILRSGRIFPTVGPKSVSVPVDEPVKERNAGKGKAGEQ 794
T++ P V++ A + RSGR + E A G+ E+
Sbjct: 570 TLVRP------KFVIETTATQG-MTRSGRCY---------------TPEELAQGGQKKEK 607
Query: 795 AKEFDFEDADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSSGAHRDALRKVLDQAFVD 854
+ A+E + ++ +Y +V L +TPA+IS+ ALL SS HR AL K LD +V
Sbjct: 608 KSSINKAKAEEFWRRMQPKDYSIVKYLEKTPAQISVWALLMSSQLHRQALMKALDDTYVP 667
Query: 855 YDVTLGQFESIVGNVTACNSLTFSDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDTGSA 914
+++ V + ++F DE+LP EG HN+AL ++ +CR ++ VL+D GS
Sbjct: 668 VGTNSDNLAAMINQVIRGHRISFCDEELPFEGRMHNKALHVTTMCRDKIINRVLVDDGSG 727
Query: 915 LNVMPKSTLDQLAYSEAPLRLSKV 938
LN+ P STL L + L ++V
Sbjct: 728 LNICPLSTLRHLKFDLGKLHQNQV 751
Score = 56.2 bits (134), Expect = 6e-06
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 14/104 (13%)
Query: 292 MQQYKYNTYLAPSRKELQSLTQKDKESFKEYAQRFIQKAAQIRPPLDERELSDLFYETLS 351
M++ + + + P R L+ + QK ES++E+A R+ ++AA++RPP+ E+E+ ++F
Sbjct: 288 MRKRRESGEIVPDRYSLEKMKQKSTESYREFAYRWRKEAARVRPPMSEKEIVEVFVRV-- 345
Query: 352 PCYSEKMIVCASQKFTDLVETGMRIEEWARKGAAVSGSSSGGSS 395
KF ++V+ G IE+ R G V ++S SS
Sbjct: 346 ------------AKFAEIVKIGETIEDGLRTGKIVYVAASPESS 377
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 115 bits (289), Expect = 7e-24
Identities = 90/290 (31%), Positives = 136/290 (46%), Gaps = 20/290 (6%)
Query: 759 LRSGRIFPTVGPKSVSVP-VDEPVKERNAGKGKAGEQAKEFDFEDADEVLKLIKKSEYRV 817
LR G+ P P VP VD+P K KA + + + K +Y+V
Sbjct: 1258 LRGGKTLPD--PHKSKVPNVDKPAK-------KASPPGEAPEAPETKTGSKEKPAVDYKV 1308
Query: 818 VDQLLQTPAKISIMALLSSSGAHRDALRKVLDQAFVDYDVTLGQFESIVGNVTACNSLTF 877
+ L + PA +S+ L R+AL K L QA Y+V + + + N N +TF
Sbjct: 1309 LAHLKRIPALLSVYDALMMVPDLREALIKAL-QAPEVYEVDMAKHR-LYDNPLFVNEITF 1366
Query: 878 SDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSK 937
+DED +G HN+ L I + L +LID GSA+N++P +L + ++ L
Sbjct: 1367 ADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAGFTTKDLEPID 1426
Query: 938 VTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTL 997
V + FD + G + + I + F+V F V+E S+S LLGRPWIH V STL
Sbjct: 1427 VVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWIHKYRVVPSTL 1486
Query: 998 HQKLKFVSRGKLITVSGESAFLISNLSAFSVIGGSSSDGPSFQGFSAEES 1047
HQ LKF+ +G + SN S +++ +D + F EE+
Sbjct: 1487 HQCLKFLDG------NGVQQRITSNFSPYTIQESYHADAKYY--FPVEEN 1528
Score = 41.6 bits (96), Expect = 0.16
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 528 LAQNLVQTIPPPRIPDPLPRWYRPDLHCIYHQGAPGHDVERCFALKKEVQKLINSKELTF 587
L ++ +P PR PD + P L+C YH+ GH +E C A K+ +Q+ +N K +
Sbjct: 993 LMEHRALNLPEPRRPDQVTMTDNP-LYCPYHRYI-GHAIEDCIAFKEWLQRAVNEKRINL 1050
Query: 588 TDPDAVAQNNPLPTHGPAVNMI 609
D DA+ NP AVNM+
Sbjct: 1051 -DADAI---NP---DYHAVNMV 1065
>gb|AAT39963.1| putative polyprotein [Solanum demissum]
Length = 1483
Score = 111 bits (277), Expect = 2e-22
Identities = 89/286 (31%), Positives = 127/286 (44%), Gaps = 83/286 (29%)
Query: 719 PTPTTAQKAVPYKYEGTILE-PGSETTSPVVVDNIAENSRILRSGRIFPTVGPKSVSVPV 777
P P T KAVP+KYE T++ G E V D I +R R + + V
Sbjct: 65 PLPMTNPKAVPWKYEPTVVTYKGKEINEKV--DEIEGMTRSRRCYAPAELRKNNNDQMQV 122
Query: 778 DEPVKERNAGKGKAGEQAKEFDFEDADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSS 837
PV ER +A+E L+ +K S+Y +V+QL +TPA+IS+++LL S
Sbjct: 123 KSPVTER-----------------EAEEFLRKMKLSDYSIVEQLRKTPAQISLLSLLIHS 165
Query: 838 GAHRDALRKVLDQAFVDYDVTLGQFESIVGNVTACNSLTFSDEDLPAEGNKHNQALLISV 897
HR + K+L++A V + T+ Q E I G + N +TFSD++LP E
Sbjct: 166 DEHRKVVMKILNEAHVPNEGTMSQLEKIAGRIFEVNCITFSDDELPVE------------ 213
Query: 898 LCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEVDLP 957
D + E L++ G VD
Sbjct: 214 --------------------------DAIGEIELILKI----------------GPVDFT 231
Query: 958 ISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKF 1003
++ FQV + I AS++ LLGRPW+H AGAV STLHQ +KF
Sbjct: 232 VN-----FQV----LNINASYNLLLGRPWVHRAGAVPSTLHQMVKF 268
>pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB50037.1| RPE15
gene product
Length = 219
Score = 105 bits (261), Expect = 1e-20
Identities = 81/221 (36%), Positives = 107/221 (47%), Gaps = 38/221 (17%)
Query: 325 RFIQKAAQIRPPLDERELSDLFYETLSPCYSEKMIVCASQKFTDLVETGMRIEEWARKGA 384
R + AA++ P LDE EL+ F +TL + E+MIV A F+D+V G R+EE R+G
Sbjct: 9 RVERAAARVSPRLDEEELTQTFLKTLKKEHKERMIVSAPNNFSDMVTMGTRLEEAVREGI 68
Query: 385 AVSGSSSGGSSGVSSSGNKKFGNGYPKR-NAQEVGMVAHGGPQPVYSNHPFVANITPQMT 443
V S+S KK+GNG+ KR +++VGMV+ NH N T Q+
Sbjct: 69 IVLEKGE-----CSASAPKKYGNGHHKRKESKKVGMVS--------GNHDTPVNAT-QLP 114
Query: 444 APQNPNYQSPRPQGPAPYYPPLYQPLYNLQQLSQQPYYPQQPYQQRPYNPPQQQPRPQAP 503
P S P++PP YQ Q P P QP P N QQ + Q P
Sbjct: 115 LPYQYMQISQH-----PFFPPFYQ---------QYPLPPGQP--PVPVNAMAQQVQHQPP 158
Query: 504 YNQQNQKQQ-------FDPLPMTYGALLPSLLAQNLVQTIP 537
QQ Q+QQ F P+PM Y LLP+LLA+ T P
Sbjct: 159 AQQQQQQQQGPRPKTYFPPIPMRYAELLPTLLAKGHCVTRP 199
>emb|CAC44143.1| putative gag polyprotein [Cicer arietinum]
Length = 88
Score = 103 bits (257), Expect = 3e-20
Identities = 49/88 (55%), Positives = 68/88 (76%), Gaps = 2/88 (2%)
Query: 212 LCLVPDVNIPPKFKMPVFEKYQGDTCPQNHLTMYISKMIAYKNNVPLLIHCFQDSLTGPA 271
+CLVPDV IP KFK+ FEKY+G TCP+NHLTMY KM ++ +N LLIH FQDSL+G +
Sbjct: 1 MCLVPDVTIPRKFKVLEFEKYKGATCPKNHLTMYGRKMASHAHNDKLLIHFFQDSLSGAS 60
Query: 272 HTWFMGLK--GVTTFEQLAEAFMQQYKY 297
+W+M L+ + +++ LA+AF++QYKY
Sbjct: 61 LSWYMHLERNRIHSWKDLADAFLRQYKY 88
>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411560|pir||E84516 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 764
Score = 80.1 bits (196), Expect = 4e-13
Identities = 45/140 (32%), Positives = 73/140 (52%)
Query: 875 LTFSDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLR 934
LTF+ EDL HN L+I + ++ +LIDTGS++NV+ K L ++ + ++
Sbjct: 330 LTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIK 389
Query: 935 LSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVT 994
S + FDG G + LPI +G F V++ ++ +LG PWIHD A+
Sbjct: 390 PSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIP 449
Query: 995 STLHQKLKFVSRGKLITVSG 1014
S+ HQ +K + + T+ G
Sbjct: 450 SSYHQCIKIPTSIGIETIRG 469
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 79.3 bits (194), Expect = 7e-13
Identities = 43/138 (31%), Positives = 73/138 (52%)
Query: 875 LTFSDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLR 934
++F+D DL HN L++ ++ ++ VLIDTGS+++++ K L + ++ ++
Sbjct: 600 ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 659
Query: 935 LSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVT 994
+ FDG G + LPI VG V F V+ A ++ +LG PWIH A+
Sbjct: 660 PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIP 719
Query: 995 STLHQKLKFVSRGKLITV 1012
ST HQ +KF + + T+
Sbjct: 720 STYHQCVKFPTHNGIFTL 737
Score = 49.7 bits (117), Expect = 6e-04
Identities = 36/117 (30%), Positives = 50/117 (41%), Gaps = 14/117 (11%)
Query: 230 EKYQGDTCPQNHLTMYISKMIAYKNNVPLLIHCFQ--------DSLTGPAHTWFMGLK-- 279
E Y G P+ LT + + N L I F + LTGPAH WF LK
Sbjct: 222 ESYNGRNDPKEFLTSFNVAI----NRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPN 277
Query: 280 GVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFKEYAQRFIQKAAQIRPP 336
+ +F QL +F++ Y S +L S++Q KES + + RF I P
Sbjct: 278 SIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVP 334
>gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)]
Length = 1251
Score = 77.8 bits (190), Expect = 2e-12
Identities = 51/178 (28%), Positives = 90/178 (49%), Gaps = 11/178 (6%)
Query: 886 GNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDG 945
GN+H + L I+ S+S +++D G+A+N+MP +T +L + L + + ++ F G
Sbjct: 694 GNRHLKPLYINGYVNGKSMSKMMVDGGAAVNLMPYATFKKLGRNAEDLIKTNMVLKDFGG 753
Query: 946 TRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVS 1005
G +++ ++VG TF V++ + S+S LLGR WIH + ST+HQ L
Sbjct: 754 NPSETRGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQ 813
Query: 1006 RGKLITVSGESAFLISNLSAF--SVIGGSS---------SDGPSFQGFSAEESVGKIE 1052
K+ V +S + N S + V+ GS+ D QGF + + + +I+
Sbjct: 814 GDKIEIVPADSQSKMENPSYYFEGVVEGSNVYAKDTVDDLDDKQGQGFMSADELEEID 871
Score = 53.5 bits (127), Expect = 4e-05
Identities = 46/178 (25%), Positives = 79/178 (43%), Gaps = 9/178 (5%)
Query: 218 VNIPPKFKMPVFEKYQGD--TCPQNHLTMYISKMIAYKNNVPLLIHCFQDSLTGPAHTWF 275
V +P +FK+P F K+ G H+ ++++ L F+ SL+G A TWF
Sbjct: 236 VPLPNRFKVPDFSKFSGQEGVSTYEHINRFLAQCGEASAVDALRFRLFRLSLSGSAFTWF 295
Query: 276 MGLK--GVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFKEYAQRFIQKAAQ- 332
L + ++ L + F Y Y+ +L ++ Q+ E EY QRF + +
Sbjct: 296 SSLPCGSINSWADLEKQF-HSYFYSWVHEMKLSDLTAIKQRHDEPVHEYIQRFREMRNKC 354
Query: 333 IRPPLDERELSDLFYETLSPCYSEKMIVCASQKFTDLVETGMRIEEWARKGAAVSGSS 390
L + +L+DL ++ + P EK+ +S+ F L +I + A V SS
Sbjct: 355 FSLSLTDAQLADLAFQGMIPPIREKL---SSEDFDSLSHLIQKITLHEHRSAEVRRSS 409
>ref|XP_468901.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|41393197|gb|AAS01920.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1149
Score = 77.4 bits (189), Expect = 3e-12
Identities = 75/292 (25%), Positives = 136/292 (45%), Gaps = 28/292 (9%)
Query: 782 KERNAGKGKAGEQAKEFDFEDADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSSGAHR 841
++R + + E+ +E + E ++ K + E+RV +Q+L + +++ A R
Sbjct: 549 QKRRVQRLRNRERLQEVEQEINHQLRKAKPRQEWRVKNQVL-------VADDVAADEAKR 601
Query: 842 DALRKVLDQAFVDYDVTL----GQFESIVGNVTACNS-LTFSDEDLPAEG-----NKHNQ 891
A K + A ++ TL G ++ V V ++ L S E E N+H +
Sbjct: 602 LAKGKSVVTALINMVFTLLAKFGIDQADVDEVEEESAKLVLSTEQAVFEKPEGTENRHLK 661
Query: 892 ALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVY 951
L I+ +S +++D G+A+N+MP +T +L + L + + + F G
Sbjct: 662 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLEDFGGNPSETK 721
Query: 952 GEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSRGKLIT 1011
G +++ ++VG TF V++ + S+S LLGR WIH + ST+HQ L K+
Sbjct: 722 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGDKIEI 781
Query: 1012 VSGESAFLISNLSAF--SVIGGSS---------SDGPSFQGFSAEESVGKIE 1052
V +S + N S + V+GGSS D QGF + + + +I+
Sbjct: 782 VPADSQLKMENPSYYFEGVMGGSSVYLKDTVDDLDDKQGQGFMSADDLEEID 833
>ref|XP_474437.1| OSJNBa0070M12.15 [Oryza sativa (japonica cultivar-group)]
gi|38345832|emb|CAE01862.2| OSJNBa0070M12.15 [Oryza
sativa (japonica cultivar-group)]
Length = 1685
Score = 75.5 bits (184), Expect = 1e-11
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 887 NKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGT 946
N+H + L I+ +S +++D G+A+N+MP +T +L + L + + ++ F G
Sbjct: 734 NRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRTTEDLMKTNMVLKDFGGN 793
Query: 947 RRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSR 1006
G +++ ++VG TF V++ + S+S LLGR WIH + ST+HQ L
Sbjct: 794 PSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQG 853
Query: 1007 GKLITVSGESAFLISNLSAF--SVIGGSS---------SDGPSFQGFSAEESVGKIE 1052
K+ V +S + N S + V+ GSS D QGF + + + +++
Sbjct: 854 DKVEIVPADSRLKMKNPSYYFEGVVEGSSIYAKDTVDDLDDKQGQGFMSADDLDEVD 910
>emb|CAB77873.1| putative transposon protein [Arabidopsis thaliana]
gi|3377834|gb|AAC28207.1| T24H24.13 gene product
[Arabidopsis thaliana] gi|7487390|pir||T01469
hypothetical protein T24H24.13 - Arabidopsis thaliana
Length = 681
Score = 74.7 bits (182), Expect = 2e-11
Identities = 43/145 (29%), Positives = 74/145 (50%)
Query: 873 NSLTFSDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAP 932
+ +TF + + H+ AL+I + LS+++IDTGS+++V+ ++ + ++
Sbjct: 519 HQITFWESETTDLNKPHDDALVIRIDVGNYELSHIMIDTGSSVDVLFYDAFKRMGHLDSE 578
Query: 933 LRLSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGA 992
L+ K + F G G + LP +F V+ +A F+ +LGRPW+H A
Sbjct: 579 LQGRKTPLTGFAGDTTFSLGTIQLPTIARGVRRLTSFLVVNKKAPFNAILGRPWLHAMKA 638
Query: 993 VTSTLHQKLKFVSRGKLITVSGESA 1017
V ST HQ +KF S + VS +A
Sbjct: 639 VPSTYHQCIKFPSDKGIAVVSAANA 663
>gb|AAV44059.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55168117|gb|AAV43984.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1681
Score = 73.9 bits (180), Expect = 3e-11
Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 887 NKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGT 946
N+H++ L ++ +S +++D G+A+N+MP +T +L + L + + ++ F G
Sbjct: 750 NRHHKPLYVNGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKHFGGN 809
Query: 947 RRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSR 1006
G +++ ++VG TF V++ + S+S LLGR WIH + ST+HQ L
Sbjct: 810 PSETKGVLNVELTVGSKTIPTTFFVIDGKRSYSLLLGRDWIHTNCCIPSTMHQCLIQWQG 869
Query: 1007 GKLITVSGESAFLISNLSAF--SVIGGS---------SSDGPSFQGFSAEESVGKIE 1052
K+ V +S + N S + V+ GS D QGF + + + +I+
Sbjct: 870 HKIEVVPADSQSKMENPSYYFEGVVEGSDVYAKDTVDDLDDKQGQGFMSADDLEEID 926
Score = 38.1 bits (87), Expect = 1.7
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 258 LLIHCFQDSLTGPAHTWFMGLK--GVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKD 315
L + F+ SL+G A TWF L V ++ L + F Y Y+ +L ++ Q+
Sbjct: 362 LRVRMFRLSLSGLAFTWFSSLPYGSVNSWADLEKQF-HSYFYSGVHEMKLFDLTAIKQRY 420
Query: 316 KESFKEYAQRFIQ-KAAQIRPPLDERELSDLFYETLSPCYSEKMIVCASQKFTDLVETGM 374
E EY QRF + + L + +L+DL ++ + P EK +S+ F L
Sbjct: 421 DEPVHEYIQRFREIRNKCFSLSLTDAQLADLAFQGMIPPIREKF---SSEDFDSLSYLIQ 477
Query: 375 RIEEWARKGAAVSGSS 390
++ + A V SS
Sbjct: 478 KVTLHEHRSADVRRSS 493
>emb|CAB79049.1| putative protein [Arabidopsis thaliana] gi|5262172|emb|CAB45815.1|
putative protein [Arabidopsis thaliana]
gi|7486751|pir||T10591 hypothetical protein F9F13.140 -
Arabidopsis thaliana
Length = 853
Score = 73.2 bits (178), Expect = 5e-11
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 875 LTFSDEDLPAEGNKHNQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLR 934
+ F+ ED + HN AL+I ++ + +LIDTGS++N+M TL ++ SE+ +
Sbjct: 463 IIFTSEDASGIQHPHNDALVIKLVMEDFDVERILIDTGSSVNLMFLKTLFKMGISESKIM 522
Query: 935 LSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVT 994
+ +DG + GE+ L + VG + F V++ + ++ +LG PWI+ A+
Sbjct: 523 PKIRPMTGYDGEAKMSIGEIKLQVQVGGITQKTKFVVIDSEPIYNAILGSPWIYSMKAIP 582
Query: 995 ST--------------LHQKLKFVSRGKLITVSGESA 1017
ST L + + G LI + G A
Sbjct: 583 STNLHTIRQPEGLTDMLRDREEAAKEGNLIAIKGRRA 619
Score = 42.0 bits (97), Expect = 0.12
Identities = 24/66 (36%), Positives = 37/66 (55%), Gaps = 2/66 (3%)
Query: 263 FQDSLTGPAHTWFMGLKG--VTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFK 320
F + LTG A T F L+ + F QL+ AF++QY+ S +L S+TQ++ E+
Sbjct: 225 FVEGLTGNALTCFSRLEANSIDNFTQLSTAFLKQYRVFIQPGASSSDLWSMTQENGETLN 284
Query: 321 EYAQRF 326
+Y RF
Sbjct: 285 DYLGRF 290
>gb|AAX94889.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 589
Score = 72.8 bits (177), Expect = 6e-11
Identities = 63/255 (24%), Positives = 121/255 (46%), Gaps = 17/255 (6%)
Query: 782 KERNAGKGKAGEQAKEFDFEDADEVLKLIKKSEYRVVDQLLQTPAKISIMALLSSSGAHR 841
++R + ++ E+++E + E + K K E+RV +Q + ++ ++ A R
Sbjct: 203 QKRRVQRLRSRERSQEVEQEINHRLKKTKPKQEWRVKNQ-------VPVVEEATADEAKR 255
Query: 842 DALRKVLDQAFVDYDVTL----GQFESIVGNVTACNS-LTFSDED-----LPAEGNKHNQ 891
A K + A ++ TL G ++ + V ++ L S E L N+H +
Sbjct: 256 LAKGKSVVTAPINMVFTLPAEFGNKQADIDEVEEESAKLILSPEQAVFEKLEGTENRHLK 315
Query: 892 ALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVY 951
L I+ +S +++D G+A+N+MP +T +L + L + + ++ F G
Sbjct: 316 PLYINCYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRNAEDLIKTNMVLKDFGGNPSETK 375
Query: 952 GEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSRGKLIT 1011
G +++ ++VG TF V++ + S+S L+GR WIH + ST+HQ L K+
Sbjct: 376 GVLNVGLTVGNKTIPTTFFVLDGKGSYSLLVGRDWIHANCCIPSTMHQCLIQWQGDKIEI 435
Query: 1012 VSGESAFLISNLSAF 1026
V +S + N S +
Sbjct: 436 VLADSQLKMENPSYY 450
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,113,521,549
Number of Sequences: 2540612
Number of extensions: 101569337
Number of successful extensions: 512299
Number of sequences better than 10.0: 4280
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 3584
Number of HSP's that attempted gapping in prelim test: 433349
Number of HSP's gapped (non-prelim): 27700
length of query: 1155
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1016
effective length of database: 510,215,326
effective search space: 518378771216
effective search space used: 518378771216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)
Medicago: description of AC145024.28