BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144931.17 + phase: 0 /pseudo/partial
         (50 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM20712.1| 26S proteasome regulatory subunit [Arabidopsis th...    49  4e-05
gb|AAP86657.1| 26S proteasome subunit RPN2a [Arabidopsis thaliana]     49  4e-05
gb|AAO42045.1| putative 26S proteasome regulatory subunit (RPN2)...    47  1e-04
gb|AAP82172.1| 26S proteasome subunit RPN2A [synthetic construct]      47  1e-04
gb|AAP73043.1| 26S proteasome subunit RPN2b [Arabidopsis thaliana]     45  4e-04
ref|XP_480766.1| putative proteasome 26S non-ATPase subunit 1 [O...    37  0.11
emb|CAE03647.2| OSJNBa0060N03.12 [Oryza sativa (japonica cultiva...    35  0.42
emb|CAA21078.1| SPBC17D11.07c [Schizosaccharomyces pombe] gi|191...    33  2.7
emb|CAH77954.1| 26S proteasome subunit, putative [Plasmodium cha...    32  3.5
emb|CAI04368.1| 26S proteasome subunit, putative [Plasmodium ber...    32  3.5
gb|EAA22042.1| Rpn2 gene product-related [Plasmodium yoelii yoelii]    32  3.5
ref|NP_702521.1| 26S proteasome subunit, putative [Plasmodium fa...    32  4.6

>gb|AAM20712.1| 26S proteasome regulatory subunit [Arabidopsis thaliana]
          gi|2914700|gb|AAC04490.1| 26S proteasome regulatory
          subunit (RPN2), putative [Arabidopsis thaliana]
          gi|15225733|ref|NP_180832.1| 26S proteasome regulatory
          subunit, putative [Arabidopsis thaliana]
          gi|7486095|pir||T00795 26S proteasome regulatory
          subunit [imported] - Arabidopsis thaliana
          Length = 1004

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 1  MATTLVSSAGGMLAMLNESHISLKIHALSXLN 32
          MAT +VSSAGG+LAMLNE H  LK+HALS LN
Sbjct: 1  MATPMVSSAGGLLAMLNEPHPVLKLHALSNLN 32


>gb|AAP86657.1| 26S proteasome subunit RPN2a [Arabidopsis thaliana]
          Length = 1004

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 1  MATTLVSSAGGMLAMLNESHISLKIHALSXLN 32
          MAT +VSSAGG+LAMLNE H  LK+HALS LN
Sbjct: 1  MATPMVSSAGGLLAMLNEPHPVLKLHALSNLN 32


>gb|AAO42045.1| putative 26S proteasome regulatory subunit (RPN2) [Arabidopsis
          thaliana] gi|15220326|ref|NP_171973.1| 26S proteasome
          regulatory subunit, putative [Arabidopsis thaliana]
          gi|7211984|gb|AAF40455.1| Strong similarity to the
          SEN3-like tRNA-processing protein F24L7.13 from A.
          thaliana gi|2914700 on BAC gb|AC003974.  EST
          gb|AA712969 comes from this gene. [Arabidopsis
          thaliana] gi|25347943|pir||C86181 hypothetical protein
          [imported] - Arabidopsis thaliana
          Length = 1001

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 23/31 (74%), Positives = 26/31 (83%)

Query: 1  MATTLVSSAGGMLAMLNESHISLKIHALSXL 31
          MA  +VSSAGG+LAMLNE H SLK+HALS L
Sbjct: 1  MAAAMVSSAGGLLAMLNEPHPSLKLHALSYL 31


>gb|AAP82172.1| 26S proteasome subunit RPN2A [synthetic construct]
          Length = 1000

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 23/31 (74%), Positives = 26/31 (83%)

Query: 2  ATTLVSSAGGMLAMLNESHISLKIHALSXLN 32
          AT +VSSAGG+LAMLNE H  LK+HALS LN
Sbjct: 1  ATPMVSSAGGLLAMLNEPHPVLKLHALSNLN 31


>gb|AAP73043.1| 26S proteasome subunit RPN2b [Arabidopsis thaliana]
          Length = 995

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 22/30 (73%), Positives = 25/30 (83%)

Query: 2  ATTLVSSAGGMLAMLNESHISLKIHALSXL 31
          A  +VSSAGG+LAMLNE H SLK+HALS L
Sbjct: 1  AAAMVSSAGGLLAMLNEPHPSLKLHALSYL 30


>ref|XP_480766.1| putative proteasome 26S non-ATPase subunit 1 [Oryza sativa
          (japonica cultivar-group)] gi|38637173|dbj|BAD03425.1|
          putative proteasome 26S non-ATPase subunit 1 [Oryza
          sativa (japonica cultivar-group)]
          Length = 987

 Score = 37.4 bits (85), Expect = 0.11
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 2  ATTLVSSAGGMLAMLNESHISLKIHALSXLN 32
          A  +VSSA G+LAML E    LK+HAL+ LN
Sbjct: 4  AAVMVSSASGLLAMLQEPAAELKLHALANLN 34


>emb|CAE03647.2| OSJNBa0060N03.12 [Oryza sativa (japonica cultivar-group)]
          gi|50928603|ref|XP_473829.1| OSJNBa0060N03.12 [Oryza
          sativa (japonica cultivar-group)]
          Length = 925

 Score = 35.4 bits (80), Expect = 0.42
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 2  ATTLVSSAGGMLAMLNESHISLKIHALSXLN 32
          A   VSSA G+LAML E    LK+HAL+ LN
Sbjct: 5  AVATVSSASGILAMLQEPAEELKLHALASLN 35


>emb|CAA21078.1| SPBC17D11.07c [Schizosaccharomyces pombe]
          gi|19113173|ref|NP_596381.1| hypothetical protein
          SPBC17D11.07c [Schizosaccharomyces pombe 972h-]
          gi|7489943|pir||T39718 26s proteasome regulatory
          subunit - fission yeast  (Schizosaccharomyces pombe)
          gi|51701914|sp|O74762|RPN2_SCHPO 26S proteasome
          regulatory subunit rpn2
          Length = 965

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 12/26 (46%), Positives = 22/26 (84%)

Query: 3  TTLVSSAGGMLAMLNESHISLKIHAL 28
          T++++SAGG++A+L+E    L++HAL
Sbjct: 9  TSIITSAGGLMALLDEQERELQVHAL 34


>emb|CAH77954.1| 26S proteasome subunit, putative [Plasmodium chabaudi]
          Length = 1171

 Score = 32.3 bits (72), Expect = 3.5
 Identities = 15/28 (53%), Positives = 20/28 (70%)

Query: 5  LVSSAGGMLAMLNESHISLKIHALSXLN 32
          +V+SA G++A+LNE   SLKI  L  LN
Sbjct: 12 IVTSASGVIALLNEEDASLKIFGLEKLN 39


>emb|CAI04368.1| 26S proteasome subunit, putative [Plasmodium berghei]
          Length = 1177

 Score = 32.3 bits (72), Expect = 3.5
 Identities = 15/28 (53%), Positives = 20/28 (70%)

Query: 5  LVSSAGGMLAMLNESHISLKIHALSXLN 32
          +V+SA G++A+LNE   SLKI  L  LN
Sbjct: 12 IVTSASGVIALLNEEDASLKIFGLEKLN 39


>gb|EAA22042.1| Rpn2 gene product-related [Plasmodium yoelii yoelii]
          Length = 1232

 Score = 32.3 bits (72), Expect = 3.5
 Identities = 15/28 (53%), Positives = 20/28 (70%)

Query: 5  LVSSAGGMLAMLNESHISLKIHALSXLN 32
          +V+SA G++A+LNE   SLKI  L  LN
Sbjct: 12 IVTSASGVIALLNEEDASLKIFGLEKLN 39


>ref|NP_702521.1| 26S proteasome subunit, putative [Plasmodium falciparum 3D7]
          gi|23497706|gb|AAN37245.1| 26S proteasome subunit,
          putative [Plasmodium falciparum 3D7]
          Length = 1172

 Score = 32.0 bits (71), Expect = 4.6
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 5  LVSSAGGMLAMLNESHISLKIHALSXLN 32
          +V+SA G++A+LNE   SLK+  L  LN
Sbjct: 12 IVTSASGVIALLNEEETSLKLFGLEKLN 39


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.316    0.123    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,146,696
Number of Sequences: 2540612
Number of extensions: 1495812
Number of successful extensions: 2406
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2394
Number of HSP's gapped (non-prelim): 12
length of query: 50
length of database: 863,360,394
effective HSP length: 26
effective length of query: 24
effective length of database: 797,304,482
effective search space: 19135307568
effective search space used: 19135307568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)