BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144931.14 - phase: 0 /pseudo
(122 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF34799.1| 40S ribosomal protein S16 [Euphorbia esula] 138 4e-32
emb|CAA53567.1| RS16 protein, 40S subunit [Gossypium hirsutum] g... 130 6e-30
gb|AAB86856.1| ribosomal protein S16 [Fritillaria agrestis] gi|3... 127 8e-29
gb|AAM63947.1| 40S ribosomal protein S16 [Arabidopsis thaliana] ... 123 9e-28
gb|AAL15244.1| putative 40S ribosomal protein S16 [Arabidopsis t... 123 1e-27
gb|AAF26790.1| putative 40S ribosomal protein S16 [Arabidopsis t... 114 4e-25
gb|AAD23965.1| ribosomal protein S16 [Tortula ruralis] gi|173698... 112 2e-24
pir||T04083 probable ribosomal protein S16 - rice gi|1172818|sp|... 105 2e-22
gb|EAL93345.1| ribosomal protein S9 [Aspergillus fumigatus Af293] 105 3e-22
emb|CAB65805.1| rps16-2 [Schizosaccharomyces pombe] gi|3006191|e... 104 6e-22
ref|XP_512651.1| PREDICTED: similar to ribosomal protein S16; 40... 103 1e-21
ref|XP_341816.2| PREDICTED: similar to 40S ribosomal protein S16... 103 1e-21
ref|XP_533674.1| PREDICTED: similar to ribosomal protein S16 [Ca... 103 1e-21
gb|AAH64030.1| Rps16 protein [Rattus norvegicus] 103 1e-21
gb|AAX29081.1| ribosomal protein S16 [synthetic construct] 103 1e-21
gb|AAH82286.1| Rps16 protein [Mus musculus] 103 1e-21
ref|XP_416113.1| PREDICTED: similar to 40S ribosomal protein S16... 103 1e-21
gb|AAH90618.1| Rps16 protein [Mus musculus] 103 1e-21
gb|AAH84715.1| Rps16 protein [Rattus norvegicus] 103 1e-21
gb|AAH71674.1| Unknown (protein for MGC:87876) [Homo sapiens] 103 1e-21
>gb|AAF34799.1| 40S ribosomal protein S16 [Euphorbia esula]
Length = 144
Score = 138 bits (347), Expect = 4e-32
Identities = 66/68 (97%), Positives = 66/68 (97%)
Query: 2 EQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 61
E VQCFGRKK AVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD
Sbjct: 6 ESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 65
Query: 62 MRIRVKGG 69
MRIRVKGG
Sbjct: 66 MRIRVKGG 73
>emb|CAA53567.1| RS16 protein, 40S subunit [Gossypium hirsutum]
gi|541835|pir||S41193 ribosomal protein S16 protein -
upland cotton gi|1173209|sp|P46293|RS16_GOSHI 40S
ribosomal protein S16
Length = 145
Score = 130 bits (328), Expect = 6e-30
Identities = 63/69 (91%), Positives = 64/69 (92%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
+E VQCFGRKK AVAVTHCKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GV
Sbjct: 6 IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65
Query: 61 DMRIRVKGG 69
DMRIRVKGG
Sbjct: 66 DMRIRVKGG 74
>gb|AAB86856.1| ribosomal protein S16 [Fritillaria agrestis]
gi|3122800|sp|O22647|RS16_FRIAG 40S ribosomal protein
S16
Length = 145
Score = 127 bits (318), Expect = 8e-29
Identities = 59/68 (86%), Positives = 64/68 (93%)
Query: 2 EQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 61
E VQCFGRKK AVAVTHCKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVD
Sbjct: 7 ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVD 66
Query: 62 MRIRVKGG 69
MRIRV+GG
Sbjct: 67 MRIRVRGG 74
>gb|AAM63947.1| 40S ribosomal protein S16 [Arabidopsis thaliana]
gi|4558679|gb|AAD22696.1| 40S ribosomal protein S16
[Arabidopsis thaliana] gi|13926208|gb|AAK49582.1| 40S
ribosomal protein S16 [Arabidopsis thaliana]
gi|15226676|ref|NP_178826.1| 40S ribosomal protein S16
(RPS16A) [Arabidopsis thaliana] gi|25294609|pir||E84489
40S ribosomal protein S16 [imported] - Arabidopsis
thaliana
Length = 146
Score = 123 bits (309), Expect = 9e-28
Identities = 57/68 (83%), Positives = 62/68 (90%)
Query: 2 EQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 61
E VQCFGRKK AVAVTHCKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFAGV+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67
Query: 62 MRIRVKGG 69
MRIRV GG
Sbjct: 68 MRIRVNGG 75
>gb|AAL15244.1| putative 40S ribosomal protein S16 [Arabidopsis thaliana]
gi|13877831|gb|AAK43993.1| putative 40S ribosomal
protein S16 [Arabidopsis thaliana]
gi|15238809|ref|NP_197339.1| 40S ribosomal protein S16
(RPS16C) [Arabidopsis thaliana]
gi|2500430|sp|Q42340|RS16_ARATH 40S ribosomal protein
S16
Length = 146
Score = 123 bits (308), Expect = 1e-27
Identities = 56/68 (82%), Positives = 62/68 (90%)
Query: 2 EQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 61
E VQCFGRKK AVAVTHCKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFAGV+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67
Query: 62 MRIRVKGG 69
MRIRV GG
Sbjct: 68 MRIRVNGG 75
>gb|AAF26790.1| putative 40S ribosomal protein S16 [Arabidopsis thaliana]
gi|28466835|gb|AAO44026.1| At3g04230 [Arabidopsis
thaliana] gi|15229252|ref|NP_187073.1| 40S ribosomal
protein S16 (RPS16B) [Arabidopsis thaliana]
Length = 146
Score = 114 bits (286), Expect = 4e-25
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 2 EQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVD 61
E VQCFGRKK A AVT+CKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRFAGVD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 62 MRIRVKGG 69
MRIR GG
Sbjct: 68 MRIRATGG 75
>gb|AAD23965.1| ribosomal protein S16 [Tortula ruralis]
gi|17369864|sp|Q9XEK7|RS16_TORRU 40S ribosomal protein
S16
Length = 142
Score = 112 bits (280), Expect = 2e-24
Identities = 54/69 (78%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
+E VQCFGRKK AVAVT+C+RGRGLI++ PIELVEPEILR+KA+EP+LLLGR +FAGV
Sbjct: 4 VESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGV 62
Query: 61 DMRIRVKGG 69
DMRIRVKGG
Sbjct: 63 DMRIRVKGG 71
>pir||T04083 probable ribosomal protein S16 - rice
gi|1172818|sp|P46294|RS16_ORYSA 40S ribosomal protein
S16 gi|538428|gb|AAA33916.1| ribosomal protein S16
gi|1096552|prf||2111468A ribosomal protein S16
Length = 149
Score = 105 bits (263), Expect = 2e-22
Identities = 49/66 (74%), Positives = 57/66 (86%)
Query: 4 VQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMR 63
VQCFGRKK AVAV++CK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF +DMR
Sbjct: 13 VQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 64 IRVKGG 69
IRV+GG
Sbjct: 73 IRVRGG 78
>gb|EAL93345.1| ribosomal protein S9 [Aspergillus fumigatus Af293]
Length = 143
Score = 105 bits (261), Expect = 3e-22
Identities = 45/66 (68%), Positives = 57/66 (86%)
Query: 4 VQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMR 63
VQCFG+KK A AV HCK+G+GLIK+NG P+ LV+PEILRFK YEP+L++G +FAGVD+R
Sbjct: 7 VQCFGKKKTATAVAHCKQGKGLIKVNGQPLSLVQPEILRFKVYEPLLIVGADKFAGVDIR 66
Query: 64 IRVKGG 69
+RV GG
Sbjct: 67 VRVSGG 72
>emb|CAB65805.1| rps16-2 [Schizosaccharomyces pombe] gi|3006191|emb|CAA18411.1|
SPBC18H10.14 [Schizosaccharomyces pombe]
gi|19112530|ref|NP_595738.1| hypothetical protein
SPBC18H10.14 [Schizosaccharomyces pombe 972h-]
gi|19114364|ref|NP_593452.1| hypothetical protein
SPAC664.04c [Schizosaccharomyces pombe 972h-]
gi|6094158|sp|O60144|RS16_SCHPO 40S ribosomal protein
S16
Length = 140
Score = 104 bits (259), Expect = 6e-22
Identities = 46/69 (66%), Positives = 56/69 (80%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
M+ VQCFG+K NA AV HCK G+GLIK+NG P+ LV+PEILR K YEPIL+ G +FAGV
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 61 DMRIRVKGG 69
D+R+RV GG
Sbjct: 61 DIRVRVSGG 69
>ref|XP_512651.1| PREDICTED: similar to ribosomal protein S16; 40S ribosomal
protein S16 [Pan troglodytes]
gi|60655875|gb|AAX32501.1| ribosomal protein S16
[synthetic construct] gi|61834575|ref|XP_582724.1|
PREDICTED: similar to 40S ribosomal protein S16 [Bos
taurus] gi|14044116|gb|AAH07977.1| Ribosomal protein
S16 [Homo sapiens] gi|13279236|gb|AAH04324.1| Ribosomal
protein S16 [Homo sapiens] gi|57714|emb|CAA35662.1|
unnamed protein product [Rattus rattus]
gi|50403607|sp|P62249|RS16_HUMAN 40S ribosomal protein
S16 gi|54039372|sp|P14131|RS16_MOUSE 40S ribosomal
protein S16 gi|54039370|sp|P62250|RS16_RAT 40S
ribosomal protein S16 gi|26353788|dbj|BAC40524.1|
unnamed protein product [Mus musculus]
gi|26353422|dbj|BAC40341.1| unnamed protein product
[Mus musculus] gi|26350881|dbj|BAC39077.1| unnamed
protein product [Mus musculus]
gi|60394813|sp|Q29201|RS16_PIG 40S ribosomal protein
S16 gi|338447|gb|AAA60583.1| RPS16
gi|12859587|dbj|BAB31702.1| unnamed protein product
[Mus musculus] gi|17932976|dbj|BAB79479.1| ribosomal
protein S16 [Homo sapiens] gi|12846934|dbj|BAB27368.1|
unnamed protein product [Mus musculus]
gi|12846230|dbj|BAB27083.1| unnamed protein product
[Mus musculus] gi|12846181|dbj|BAB27062.1| unnamed
protein product [Mus musculus]
gi|4506691|ref|NP_001011.1| ribosomal protein S16 [Homo
sapiens]
Length = 146
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 67 DIRVRVKGG 75
>ref|XP_341816.2| PREDICTED: similar to 40S ribosomal protein S16 [Rattus norvegicus]
Length = 264
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 125 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 184
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 185 DIRVRVKGG 193
>ref|XP_533674.1| PREDICTED: similar to ribosomal protein S16 [Canis familiaris]
Length = 181
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 42 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 101
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 102 DIRVRVKGG 110
>gb|AAH64030.1| Rps16 protein [Rattus norvegicus]
Length = 161
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 22 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 81
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 82 DIRVRVKGG 90
>gb|AAX29081.1| ribosomal protein S16 [synthetic construct]
Length = 147
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 67 DIRVRVKGG 75
>gb|AAH82286.1| Rps16 protein [Mus musculus]
Length = 157
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 18 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 77
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 78 DIRVRVKGG 86
>ref|XP_416113.1| PREDICTED: similar to 40S ribosomal protein S16 [Gallus gallus]
Length = 146
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 67 DIRVRVKGG 75
>gb|AAH90618.1| Rps16 protein [Mus musculus]
Length = 172
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 33 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 92
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 93 DIRVRVKGG 101
>gb|AAH84715.1| Rps16 protein [Rattus norvegicus]
Length = 159
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 20 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 79
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 80 DIRVRVKGG 88
>gb|AAH71674.1| Unknown (protein for MGC:87876) [Homo sapiens]
Length = 152
Score = 103 bits (257), Expect = 1e-21
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGV 60
++ VQ FGRKK A AV HCKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGV
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGV 66
Query: 61 DMRIRVKGG 69
D+R+RVKGG
Sbjct: 67 DIRVRVKGG 75
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.147 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,930,391
Number of Sequences: 2540612
Number of extensions: 4530824
Number of successful extensions: 7932
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 7794
Number of HSP's gapped (non-prelim): 168
length of query: 122
length of database: 863,360,394
effective HSP length: 98
effective length of query: 24
effective length of database: 614,380,418
effective search space: 14745130032
effective search space used: 14745130032
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144931.14