BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144929.2 + phase: 0
(120 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 59 2e-08
gb|AAP53704.1| contains similarity to non-LTR reverse transcript... 52 4e-06
gb|AAX96297.1| retrotransposon protein, putative, unclassified [... 49 4e-05
ref|XP_480974.1| cyst nematode resistance protein-like protein [... 48 5e-05
ref|NP_908814.1| B1088D01.11 [Oryza sativa (japonica cultivar-gr... 48 6e-05
ref|XP_475401.1| putative polyprotein [Oryza sativa (japonica cu... 47 8e-05
ref|XP_471624.1| OSJNBa0029L02.10 [Oryza sativa (japonica cultiv... 47 8e-05
emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa (japonica cultivar... 46 2e-04
gb|AAX95598.1| hypothetical protein [Oryza sativa (japonica cult... 46 2e-04
ref|XP_470480.1| hypothetical protein [Oryza sativa (japonica cu... 45 3e-04
ref|XP_479426.1| cyst nematode resistance protein-like protein [... 45 5e-04
emb|CAD40947.1| OSJNBa0027G07.11 [Oryza sativa (japonica cultiva... 45 5e-04
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 45 5e-04
ref|XP_471568.1| OSJNBb0032D24.9 [Oryza sativa (japonica cultiva... 43 0.002
ref|XP_483473.1| cyst nematode resistance protein-like [Oryza sa... 43 0.002
ref|NP_915116.1| B1078G07.7 [Oryza sativa (japonica cultivar-gro... 42 0.003
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv... 42 0.004
gb|AAP53920.1| putative non-LTR retroelement reverse transcripta... 41 0.008
ref|XP_470208.1| Putative retroelement [Oryza sativa (japonica c... 41 0.008
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 40 0.013
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 59.3 bits (142), Expect = 2e-08
Identities = 28/74 (37%), Positives = 41/74 (54%), Gaps = 2/74 (2%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW +VPLK+ I W +N++L KDNL+ RG DN+ C +E QHLF CP
Sbjct: 844 IWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWRKGDNK--CQFCDKVETVQHLFFDCPL 901
Query: 77 FNSQWDLVRSWLDI 90
W+++ L++
Sbjct: 902 ARLIWNIIACALNV 915
>gb|AAP53704.1| contains similarity to non-LTR reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534230|ref|NP_921417.1|
contains similarity to non-LTR reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 379
Score = 51.6 bits (122), Expect = 4e-06
Identities = 28/78 (35%), Positives = 38/78 (47%), Gaps = 2/78 (2%)
Query: 7 PAIADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEI 66
P I + IW + PLKV AW L+++RL K NL + + +D +C G E
Sbjct: 256 PGIVSPLWDAIWKCKAPLKVKFFAWLLVKDRLSTKKNLHKKTIVPND--ICDICNGATET 313
Query: 67 AQHLFLSCPCFNSQWDLV 84
A HL CP S WD +
Sbjct: 314 ASHLCFFCPFAKSFWDKI 331
>gb|AAX96297.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 281
Score = 48.5 bits (114), Expect = 4e-05
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW + PLK+ + W +NR+L KDNL RG D + + C E QHLF P
Sbjct: 148 IWKFRTPLKIKVFLWLFTKNRILTKDNLYKRGWRKGDKKCQL--CDREETVQHLFFDRPL 205
Query: 77 FNSQWD 82
W+
Sbjct: 206 ARLMWN 211
>ref|XP_480974.1| cyst nematode resistance protein-like protein [Oryza sativa
(japonica cultivar-group)] gi|40253728|dbj|BAD05668.1|
cyst nematode resistance protein-like protein [Oryza
sativa (japonica cultivar-group)]
gi|40253549|dbj|BAD05496.1| cyst nematode resistance
protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 184
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
+W + P KV W ++R L DNL RG D CV E HLF+SC
Sbjct: 50 VWQTKAPSKVRFFLWLATKSRCLTADNLAKRGWPHQDQ--CVLCQRQQEDCLHLFVSCDY 107
Query: 77 FNSQWDLVRSWLDI 90
W L+R W+++
Sbjct: 108 TKRVWRLLRDWINV 121
>ref|NP_908814.1| B1088D01.11 [Oryza sativa (japonica cultivar-group)]
Length = 375
Score = 47.8 bits (112), Expect = 6e-05
Identities = 26/79 (32%), Positives = 35/79 (43%), Gaps = 2/79 (2%)
Query: 7 PAIADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEI 66
P+ D+ NFIW P K AW L ++RL NL + L + C G E
Sbjct: 205 PSETDLVHNFIWKNASPPKFKFFAWLLSKDRLSTAKNLFTKIIL--QSPQCAIRQTGEET 262
Query: 67 AQHLFLSCPCFNSQWDLVR 85
+ HLF CP + W +R
Sbjct: 263 SNHLFFMCPFATAFWTTIR 281
>ref|XP_475401.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|49328070|gb|AAT58770.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 47.4 bits (111), Expect = 8e-05
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 13 TTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFL 72
+T +W P K AW L +NR+ D+L RG +N C LE QHLF+
Sbjct: 283 STELVWETWAPGKHKFFAWLLAQNRIWTADHLQCRGW--PNNYFCQLCFRNLETVQHLFM 340
Query: 73 SCPCFNSQW 81
CP W
Sbjct: 341 ECPFTQQVW 349
>ref|XP_471624.1| OSJNBa0029L02.10 [Oryza sativa (japonica cultivar-group)]
gi|39546220|emb|CAE04469.3| OSJNBa0029L02.10 [Oryza
sativa (japonica cultivar-group)]
Length = 389
Score = 47.4 bits (111), Expect = 8e-05
Identities = 28/76 (36%), Positives = 38/76 (49%), Gaps = 3/76 (3%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW +VPLK+ I W +N++L KDNL RG + C E Q LF CP
Sbjct: 125 IWGLKVPLKIKIFIWMFTKNKILTKDNLFKRGW--RKGKANCQFCDQTETLQPLFY-CPL 181
Query: 77 FNSQWDLVRSWLDICS 92
W++V+ L+I S
Sbjct: 182 ARLLWNIVKCALNINS 197
>emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa (japonica cultivar-group)]
gi|50923463|ref|XP_472092.1| OSJNBa0061G20.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 46.2 bits (108), Expect = 2e-04
Identities = 24/68 (35%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW P K AW +++NR+ D L +R +N C LE+AQHLF CP
Sbjct: 1306 IWKTWAPSKCKKFAWLVLQNRIWTSDRLQLRQW--PNNYFCQLCYRNLEMAQHLFKDCPF 1363
Query: 77 FNSQWDLV 84
WD +
Sbjct: 1364 TREIWDKI 1371
>gb|AAX95598.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 46.2 bits (108), Expect = 2e-04
Identities = 26/73 (35%), Positives = 31/73 (41%), Gaps = 2/73 (2%)
Query: 13 TTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFL 72
+ + IW P K AW L NR+ D L RG +N C LE AQHLF
Sbjct: 922 SADLIWKTWAPGKHKFFAWLLAHNRIWTADRLQCRGW--PNNYFCQLCFRNLETAQHLFK 979
Query: 73 SCPCFNSQWDLVR 85
CP W+ R
Sbjct: 980 ECPFVQQIWNEAR 992
>ref|XP_470480.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|30102994|gb|AAP21407.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 207
Score = 45.4 bits (106), Expect = 3e-04
Identities = 28/86 (32%), Positives = 37/86 (42%), Gaps = 5/86 (5%)
Query: 13 TTNF---IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQH 69
+TNF IW P K AW +I+NR+ D L RG +N C E A H
Sbjct: 89 STNFNSLIWKAWAPGKCKFHAWLIIQNRVWTSDRLATRGW--QNNGCCALCRRETETALH 146
Query: 70 LFLSCPCFNSQWDLVRSWLDICSADP 95
L +C W L+ +W+ DP
Sbjct: 147 LVATCRYTKRIWHLISAWVGYQQMDP 172
>ref|XP_479426.1| cyst nematode resistance protein-like protein [Oryza sativa
(japonica cultivar-group)] gi|50510233|dbj|BAD31431.1|
cyst nematode resistance protein-like protein [Oryza
sativa (japonica cultivar-group)]
gi|22296318|dbj|BAC10089.1| cyst nematode resistance
protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 210
Score = 44.7 bits (104), Expect = 5e-04
Identities = 22/74 (29%), Positives = 32/74 (42%), Gaps = 2/74 (2%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW P +V W R R DNL +G D+ C E HLF++C
Sbjct: 55 IWQTNAPSRVRFFFWLAARGRCQTADNLAKKGWPHEDS--CALCMREQEDCHHLFVTCEF 112
Query: 77 FNSQWDLVRSWLDI 90
W+L+R+W+ +
Sbjct: 113 SGRVWELMRAWISV 126
>emb|CAD40947.1| OSJNBa0027G07.11 [Oryza sativa (japonica cultivar-group)]
gi|50924680|ref|XP_472695.1| OSJNBa0027G07.11 [Oryza
sativa (japonica cultivar-group)]
Length = 364
Score = 44.7 bits (104), Expect = 5e-04
Identities = 28/86 (32%), Positives = 37/86 (42%), Gaps = 5/86 (5%)
Query: 13 TTNF---IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQH 69
+TNF IW P K AW +I+NR+ D L RG +N C E A H
Sbjct: 275 STNFNSLIWKAWAPGKCKFHAWLIIQNRVWTSDRLATRGW--QNNGCCPLCRRETETALH 332
Query: 70 LFLSCPCFNSQWDLVRSWLDICSADP 95
L +C W L+ +W+ DP
Sbjct: 333 LVATCRYTKRIWHLISAWVGYQQMDP 358
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 44.7 bits (104), Expect = 5e-04
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 7 PAIADVTTNFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDN-QLCVTGCGGLE 65
P FIW ++PLK+ + AW L+R+RL K NL+ + + +C T E
Sbjct: 1026 PGFPSPNWKFIWDCRMPLKIKLFAWLLVRDRLSTKLNLLKKKIVQTATCDICSTTD---E 1082
Query: 66 IAQHLFLSCPCFNSQW 81
A HL +CP S W
Sbjct: 1083 TADHLSFNCPFAISFW 1098
>ref|XP_471568.1| OSJNBb0032D24.9 [Oryza sativa (japonica cultivar-group)]
gi|38344358|emb|CAE04079.2| OSJNBb0032D24.9 [Oryza
sativa (japonica cultivar-group)]
Length = 221
Score = 43.1 bits (100), Expect = 0.002
Identities = 23/59 (38%), Positives = 27/59 (44%), Gaps = 3/59 (5%)
Query: 16 FIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSC 74
FIW+ +PLK+ I W L R L KDNL R + C E QHLF C
Sbjct: 121 FIWNLSIPLKIKIFLWYLWRGITLTKDNLAKR---KWKGSIKCCFCNSNETIQHLFFDC 176
>ref|XP_483473.1| cyst nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)] gi|42407982|dbj|BAD09120.1| cyst
nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)] gi|42407880|dbj|BAD09021.1| cyst
nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 158
Score = 42.7 bits (99), Expect = 0.002
Identities = 22/68 (32%), Positives = 30/68 (43%), Gaps = 2/68 (2%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW K+ P ++ W + R L DNL RG HD C +E HL + CP
Sbjct: 47 IWQKRAPSRIKFFMWLATKGRCLTADNLQKRG-WPHDAS-CGLCNAEMESCNHLLMKCPL 104
Query: 77 FNSQWDLV 84
N W ++
Sbjct: 105 TNRVWRML 112
>ref|NP_915116.1| B1078G07.7 [Oryza sativa (japonica cultivar-group)]
Length = 325
Score = 42.0 bits (97), Expect = 0.003
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGL-EIAQHLFLSCP 75
IWH + P K+ W + R L DNL RG D C C E HLF C
Sbjct: 139 IWHTKAPAKIRFFMWLAAKGRCLTADNLQKRGWPHSD---CCNLCSRKPEDCTHLFTKCD 195
Query: 76 CFNSQWDLVRSWLDICSADPYY 97
W + S L C D +
Sbjct: 196 YTVRDWMISASQLGGCRLDDVF 217
>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
sativa (japonica cultivar-group)]
Length = 593
Score = 41.6 bits (96), Expect = 0.004
Identities = 23/61 (37%), Positives = 29/61 (46%), Gaps = 3/61 (4%)
Query: 15 NFIWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSC 74
+FIW ++PLK+ I W L +L KDNL R L C E Q+LF C
Sbjct: 479 SFIWKLRLPLKIKIFLWYLKEGVILTKDNLAKR---RWKGSLRCCFCRSHETIQYLFFDC 535
Query: 75 P 75
P
Sbjct: 536 P 536
>gb|AAP53920.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534662|ref|NP_921633.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 294
Score = 40.8 bits (94), Expect = 0.008
Identities = 22/58 (37%), Positives = 31/58 (52%), Gaps = 4/58 (6%)
Query: 34 IRNRLLMKDNLMVRGTLSHDN-QLCVTGCGGLEIAQHLFLSCPCFNSQWDLVRSWLDI 90
++ R L DNL RG H + LC E HLF +C N+ WD++R+WL+I
Sbjct: 157 LKGRCLTADNLQKRGWPHHQHCHLCSLAS---EDCTHLFAACNFTNAVWDMLRNWLNI 211
>ref|XP_470208.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|27497213|gb|AAO17357.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15451617|gb|AAK98741.1| Hypothetical protein similar
to putative retroelements [Oryza sativa]
Length = 387
Score = 40.8 bits (94), Expect = 0.008
Identities = 23/76 (30%), Positives = 35/76 (45%), Gaps = 2/76 (2%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSCPC 76
IW P +V AW + +NRL + NL + L C LE H+FL CP
Sbjct: 229 IWRSAAPPRVKFFAWLMSKNRLPTRVNLHKKTIL--PTPTCELCNANLEDTYHIFLRCPM 286
Query: 77 FNSQWDLVRSWLDICS 92
+ W++++ +I S
Sbjct: 287 AAAFWNMIQIIPEISS 302
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 40.0 bits (92), Expect = 0.013
Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 17 IWHKQVPLKVSILAWRLIRNRLLMKDNLMVRGTLSHDNQLCVTGCGGLEIAQHLFLSC 74
+W +VPLK+ + W L + +L KDNL+ R + Q C C E QH F C
Sbjct: 338 LWKVKVPLKIKVFMWFLHKKVILTKDNLIKR-KWRGNKQCCF--CNTQETIQHFFFDC 392
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.328 0.139 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,703,537
Number of Sequences: 2540612
Number of extensions: 7677592
Number of successful extensions: 15435
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 15362
Number of HSP's gapped (non-prelim): 130
length of query: 120
length of database: 863,360,394
effective HSP length: 96
effective length of query: 24
effective length of database: 619,461,642
effective search space: 14867079408
effective search space used: 14867079408
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144929.2