BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144807.8 - phase: 0
(361 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 90 1e-16
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 90 1e-16
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 87 1e-15
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 80 7e-14
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 80 1e-13
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 80 1e-13
gb|AAX92969.1| Transposable element protein, putative [Oryza sat... 80 1e-13
emb|CAE02522.2| OSJNBb0003A12.9 [Oryza sativa (japonica cultivar... 78 4e-13
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 72 2e-11
gb|AAX96097.1| Transposable element protein, putative [Oryza sat... 70 1e-10
gb|AAC13575.1| similar to Arabidopsis thaliana retrotransposon T... 70 1e-10
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 69 2e-10
dbj|BAA97081.1| Ta11 non-LTR retroelement protein-like [Arabidop... 69 2e-10
ref|NP_189728.1| hypothetical protein [Arabidopsis thaliana] 69 2e-10
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 67 1e-09
gb|AAC62785.1| F11O4.11 [Arabidopsis thaliana] gi|7268192|emb|CA... 67 1e-09
gb|AAR01703.1| hypothetical protein [Oryza sativa (japonica cult... 66 1e-09
gb|AAV43905.1| hypothetical protein [Oryza sativa (japonica cult... 66 2e-09
gb|AAD24602.1| putative Ta11-like non-LTR retroelement protein [... 64 5e-09
gb|AAD17396.1| putative Ta11-like non-LTR retroelement protein [... 64 9e-09
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 89.7 bits (221), Expect = 1e-16
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 10/207 (4%)
Query: 71 DDSDIQERLEEC------QNSILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKL 124
DD ++ LEE Q ++L + S K ++ ++ + W + + D L
Sbjct: 149 DDDAVEIELEEDEVKKAGQWTVLARFYSLKFPNQVALFEDMRRAWRLRAEMSYKSLKDNL 208
Query: 125 FHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCR 184
F + D K +++G PW R L+V + + + PIWV++ LP
Sbjct: 209 FIVSFSAEGDHKFVLQGGPWLHRGDALLVADFNGLVSPSMVPLETMPIWVRIYDLPLVMM 268
Query: 185 TKQMGIKIGSSIGTVLASELYEYP-DKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWI- 242
K+ G+ GS +G V ++ E +K +I+V+L V+ P+K + I GA I
Sbjct: 269 NKERGVIYGSKLGKVREVDVQEDGCNKHDFFRIRVDLPVNRPLKRMLAIKIKVKGAEEIR 328
Query: 243 --DFRYENLPQFCFACGLIGHTEANCK 267
+ RYE +P FCF CG IGH++ C+
Sbjct: 329 RFNLRYERIPHFCFFCGFIGHSDKECE 355
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 89.7 bits (221), Expect = 1e-16
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 10/207 (4%)
Query: 71 DDSDIQERLEEC------QNSILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKL 124
DD ++ LEE Q ++L + S K ++ ++ + W + + D L
Sbjct: 149 DDDAVEIELEEDEVKKAGQWTVLARFYSLKFPNQVALFEDMRRAWRLRAEMSYKSLKDNL 208
Query: 125 FHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCR 184
F + D K +++G PW R L+V + + + PIWV++ LP
Sbjct: 209 FIVSFSAEGDHKFVLQGGPWLHRGDALLVADFNGLVSPSMVPLETMPIWVRIYDLPLVMM 268
Query: 185 TKQMGIKIGSSIGTVLASELYEYP-DKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWI- 242
K+ G+ GS +G V ++ E +K +I+V+L V+ P+K + I GA I
Sbjct: 269 NKERGVIYGSKLGKVREVDVQEDGCNKHDFFRIRVDLPVNRPLKRMLAIKIKVKGAEEIR 328
Query: 243 --DFRYENLPQFCFACGLIGHTEANCK 267
+ RYE +P FCF CG IGH++ C+
Sbjct: 329 RFNLRYERIPHFCFFCGFIGHSDKECE 355
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 86.7 bits (213), Expect = 1e-15
Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 11/240 (4%)
Query: 39 NAITSQDPAIENDPTEETVTEDTAETDSFIYYDDSDIQERLEECQNSILGKIVSEKAIHR 98
N ++SQ P + + ED E I +++++Q+ Q +IL + S K ++
Sbjct: 318 NNLSSQGPTVFTEGEVVDEEEDAVE----IEIEENEVQKA---GQWTILARFYSLKFPNQ 370
Query: 99 NSIQNALSNIWCNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRR 158
+++ + W + + D LF + + D +++G+PW R L+V +
Sbjct: 371 SALFEDMRRAWRLRAEMSYKSLKDNLFIVSFNAEGDYNFVLQGDPWLHRGDALLVAEFNG 430
Query: 159 DIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASELYEYP-DKKLIIKIK 217
++ + PIWV++ LP + G GS +G V ++ E +K +I+
Sbjct: 431 LLNPSMVNLDTVPIWVRIYDLPLVMMNRARGELYGSKMGKVREVDVQEDGCNKHDFFRIR 490
Query: 218 VNLAVSTPIKAGIYIG---SAKDGAHWIDFRYENLPQFCFACGLIGHTEANCKLHDTRTN 274
V+L V+ P++ + I K+ RYE +P FCF CG IGH++ C+ T N
Sbjct: 491 VDLPVNRPLRRMLAIKIKVQGKEETRRFHLRYERVPHFCFFCGFIGHSDKECEKRLTNEN 550
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 80.5 bits (197), Expect = 7e-14
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 120 IGDKLFHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGL 179
+G+ F F + +R + PW F +++ + F PIWV+ L
Sbjct: 40 LGENHFLFTFHQASGKRRALEDGPWMFNKDLVVMIDLDETKLIEDMIFAFVPIWVRAMKL 99
Query: 180 PTQCRTKQMGIKIGSSIGTVLASELYEYPDKKLI---IKIKVNLAVSTPIKAGI--YIGS 234
P TK+ G+ IG +G + +L E D + ++IK+ + + P+ G+ ++G
Sbjct: 100 PLGLMTKETGMAIGREVGEFMTMDLEE--DGSAVGQFLRIKIRIDIRKPLMRGVTLFVG- 156
Query: 235 AKDGAHWIDFRYENLPQFCFACGLIGHTEANCKLHDTRTNAESRNKNV 282
A + W YE LP FC+ CG++GHTE C+ A NK++
Sbjct: 157 ADERPLWCPLVYEFLPDFCYICGIVGHTEKLCEKKLAEGEAPLFNKSL 204
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1694
Score = 80.1 bits (196), Expect = 1e-13
Identities = 60/229 (26%), Positives = 101/229 (43%), Gaps = 12/229 (5%)
Query: 49 ENDPTEETVTEDTAETDSFIYYDDSDI---QERLEECQNS----ILGKIVSEKAIHRNSI 101
EN+ + T T T+ + DD D+ +E Q + IL + S + ++ ++
Sbjct: 230 ENNQVDAT-QGPTVFTEGDLVEDDEDVVVVNIEDDELQTAGLWTILARFYSLRTPNQVAL 288
Query: 102 QNALSNIWCNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDID 161
+ + W + + D +F + D +I+G PW R L+V +
Sbjct: 289 FDDMRRAWRLRADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITC 348
Query: 162 ARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASELYEYP-DKKLIIKIKVNL 220
++ PIWV++ LP TK G GS +G V ++ + +K I+V+L
Sbjct: 349 PSNVPLDVVPIWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDL 408
Query: 221 AVSTPIKAGIYIGSAKDGAHWI---DFRYENLPQFCFACGLIGHTEANC 266
V P+K+ I I G + D YE +P FCF CG IGH++ +C
Sbjct: 409 PVKRPLKSQIAIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 457
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 80.1 bits (196), Expect = 1e-13
Identities = 60/229 (26%), Positives = 101/229 (43%), Gaps = 12/229 (5%)
Query: 49 ENDPTEETVTEDTAETDSFIYYDDSDI---QERLEECQNS----ILGKIVSEKAIHRNSI 101
EN+ + T T T+ + DD D+ +E Q + IL + S + ++ ++
Sbjct: 204 ENNQVDAT-QGPTVFTEGDLVEDDEDVVVVNIEDDELQTAGLWTILARFYSLRTPNQVAL 262
Query: 102 QNALSNIWCNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDID 161
+ + W + + D +F + D +I+G PW R L+V +
Sbjct: 263 FDDMRRAWRLRADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITC 322
Query: 162 ARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASELYEYP-DKKLIIKIKVNL 220
++ PIWV++ LP TK G GS +G V ++ + +K I+V+L
Sbjct: 323 PSNVPLDVVPIWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDL 382
Query: 221 AVSTPIKAGIYIGSAKDGAHWI---DFRYENLPQFCFACGLIGHTEANC 266
V P+K+ I I G + D YE +P FCF CG IGH++ +C
Sbjct: 383 PVKRPLKSQIAIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 431
>gb|AAX92969.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)] gi|62733928|gb|AAX96037.1| Transposable
element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 647
Score = 79.7 bits (195), Expect = 1e-13
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 17/232 (7%)
Query: 45 DPAIENDPTEETVTEDTAETDSFIYYDDSDIQERLEEC------QNSILGKIVSEKAIHR 98
+P + + P E TE + + DD ++ LEE Q +IL S +A +
Sbjct: 226 NPNLHSGP--EVFTEGVIDEE-----DDDAVEVVLEEDEIAKAGQWTILAHFYSLRAPNT 278
Query: 99 NSIQNALSNIWCNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRR 158
+++ + W + + D LF + D +++G PW R L+V +
Sbjct: 279 SALFEDMRRAWRLRADMSFKSLRDNLFIITFSAEGDYNFMLQGGPWIHRGDALLVAEFDG 338
Query: 159 DIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASELY-EYPDKKLIIKIK 217
+ PIWV++ LP + G GS + V ++ + +K +I+
Sbjct: 339 LTCPSKILLNSVPIWVRIYDLPLVLMIQARGKLYGSKLSNVREVDVVTDGLNKYDFFRIR 398
Query: 218 VNLAVSTPIKAGIYIGSAKDG---AHWIDFRYENLPQFCFACGLIGHTEANC 266
V+L V+ P+KA I I A G D RYE +P FCF CG +GH++ C
Sbjct: 399 VDLPVNHPLKAKIAIKVAVQGKEVTRSFDLRYERVPHFCFICGFLGHSDKEC 450
>emb|CAE02522.2| OSJNBb0003A12.9 [Oryza sativa (japonica cultivar-group)]
gi|50930347|ref|XP_474701.1| OSJNBb0003A12.9 [Oryza
sativa (japonica cultivar-group)]
Length = 884
Score = 78.2 bits (191), Expect = 4e-13
Identities = 58/220 (26%), Positives = 97/220 (43%), Gaps = 5/220 (2%)
Query: 52 PTEETVTEDTAETDSFIYYDDSDIQERLEECQNSILGKIVSEKAIHRNSIQNALSNIWCN 111
P+ T E E + + D +D E + Q +IL + S + + +++ +S
Sbjct: 101 PSAFTEGEIPEEEEEVVEVDIAD-DEMKQVVQWTILARFYSMRVPNHSALFEDISKASRR 159
Query: 112 PKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAP 171
+ + D LF + D K +I+G PW + L+V + +
Sbjct: 160 RSDMSYKSLHDNLFIINFKAEGDYKFVIQGGPWLHKGDALLVAEFDGLTCPSEVSLDVVT 219
Query: 172 IWVQLRGLPTQCRTKQMGIKIGSSIGTVLASELYEYP-DKKLIIKIKVNLAVSTPIKAGI 230
IW+++ LP TK +G GS G V ++ E ++ +I+V L V P K+ I
Sbjct: 220 IWIRIYDLPLVLMTKAIGELYGSKFGKVREVDVEEDGRNRHDFFRIRVELPVKKPPKSKI 279
Query: 231 YIGSAKDGAHWI---DFRYENLPQFCFACGLIGHTEANCK 267
I + G + D RYE +P FCF CG IGH+ +C+
Sbjct: 280 AIKTTVHGVEAVRRFDVRYERVPFFCFICGYIGHSVKDCE 319
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 72.4 bits (176), Expect = 2e-11
Identities = 41/128 (32%), Positives = 64/128 (49%), Gaps = 4/128 (3%)
Query: 144 WFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASE 203
W R L+V + + + PIWV++ LP K+ G+ GS +G V +
Sbjct: 287 WLHRGDALLVADFNGLVSPSMVPLETVPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVD 346
Query: 204 LYEYP-DKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWI---DFRYENLPQFCFACGLI 259
+ E +K +I+V+L V+ P+K + I GA I + RYE +P FCF CG I
Sbjct: 347 VQEDGCNKHDFFRIRVDLPVNRPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFI 406
Query: 260 GHTEANCK 267
GH++ C+
Sbjct: 407 GHSDKECE 414
>gb|AAX96097.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 594
Score = 70.1 bits (170), Expect = 1e-10
Identities = 41/131 (31%), Positives = 63/131 (47%), Gaps = 4/131 (3%)
Query: 141 GNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVL 200
G PW R L+V + + PIWV++ LP TK G GS +G V
Sbjct: 252 GGPWIHRGDALLVGEFDGITSPSRVPLEVVPIWVRIYDLPLVLMTKARGELYGSKLGRVR 311
Query: 201 ASELYEYP-DKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWI---DFRYENLPQFCFAC 256
++ E +K +I+V L+V P+++ + I G + D RYE +P FC C
Sbjct: 312 EIDVEEDGRNKHDSFRIRVELSVKRPLRSKLAIKINVQGNEVVRRFDLRYERVPHFCLIC 371
Query: 257 GLIGHTEANCK 267
G IGH++ +C+
Sbjct: 372 GFIGHSDKDCE 382
>gb|AAC13575.1| similar to Arabidopsis thaliana retrotransposon Ta11-1 (GB:(L47193)
gi|7486623|pir||T01159 hypothetical protein F7N22.17 -
Arabidopsis thaliana
Length = 416
Score = 69.7 bits (169), Expect = 1e-10
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 2/184 (1%)
Query: 85 SILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPW 144
S++ V+ + + ++ +S +W P + F +E ++R PW
Sbjct: 59 SVVVTTVNPRKQNLRALIGQMSRVWGFPDSCVGRILERGRVQFKFQTEEAMNLVLRRGPW 118
Query: 145 FFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASEL 204
F + L +H W +I L+ P WVQ+ G+P T M +G+ +G V +
Sbjct: 119 SFNDWMLSIHRWYPNISETELKI--IPFWVQITGIPLLFLTNAMARCVGNRLGIVSTVDF 176
Query: 205 YEYPDKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWIDFRYENLPQFCFACGLIGHTEA 264
E + +++K++ + P++ A D I +R+E L FC CG + H
Sbjct: 177 DENSNHVGFVRVKIDWNLDDPLRFQRNFQFAVDENTVIKYRFERLRNFCSKCGSLKHDVK 236
Query: 265 NCKL 268
C L
Sbjct: 237 ECVL 240
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 69.3 bits (168), Expect = 2e-10
Identities = 45/197 (22%), Positives = 86/197 (42%), Gaps = 3/197 (1%)
Query: 75 IQERLEECQNSILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKLFHFFMDEQED 134
+Q +++ + +LG+ + + + I + W R I ++ F F +E
Sbjct: 28 VQRAVDDNRFCLLGRPLMPRNQNLRQILTTVPRTWGLVGFVRGRIIQNRRFQFIFPSEES 87
Query: 135 TKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGS 194
++R PW F + L+V W D+D L F P W+Q+R +P Q ++ I
Sbjct: 88 LDTVLRRGPWSFADRMLVVERWTPDMDPLVLNF--IPFWIQVREIPLQFLNLEVIDNIAG 145
Query: 195 SIGTVLASELYEYPDKKL-IIKIKVNLAVSTPIKAGIYIGSAKDGAHWIDFRYENLPQFC 253
S+G A + + ++ ++I++ V+ P++ + + F YE L FC
Sbjct: 146 SLGERKAVDFDPFTTTRVEFVRIQIKWDVNHPLRFQRNYQFSLGVNTVLSFYYERLRGFC 205
Query: 254 FACGLIGHTEANCKLHD 270
CG + H +C L +
Sbjct: 206 DVCGRMTHDAGSCVLQN 222
>dbj|BAA97081.1| Ta11 non-LTR retroelement protein-like [Arabidopsis thaliana]
Length = 241
Score = 68.9 bits (167), Expect = 2e-10
Identities = 43/186 (23%), Positives = 82/186 (43%), Gaps = 5/186 (2%)
Query: 86 ILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPWF 145
+ G+ V + + SI ++ IW + + FHF +E + ++R PW
Sbjct: 39 LFGRPVMPRRQNLRSIVASMPRIWGQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWA 98
Query: 146 FRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASEL- 204
F + +++ W I F P WVQ+RG+P Q + + IG ++G VL ++
Sbjct: 99 FNDWMILLQRWEPQIPL----FPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFN 154
Query: 205 YEYPDKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWIDFRYENLPQFCFACGLIGHTEA 264
E + ++ ++ ++ P++ + + FRYE L FC CG++ H
Sbjct: 155 VEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFG 214
Query: 265 NCKLHD 270
C + +
Sbjct: 215 ACLIQN 220
>ref|NP_189728.1| hypothetical protein [Arabidopsis thaliana]
Length = 336
Score = 68.9 bits (167), Expect = 2e-10
Identities = 43/186 (23%), Positives = 82/186 (43%), Gaps = 5/186 (2%)
Query: 86 ILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPWF 145
+ G+ V + + SI ++ IW + + FHF +E + ++R PW
Sbjct: 134 LFGRPVMPRRQNLRSIVASMPRIWGQSGLVHGRIMEGRQFHFIFTLEESLETVLRRGPWA 193
Query: 146 FRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASEL- 204
F + +++ W I F P WVQ+RG+P Q + + IG ++G VL ++
Sbjct: 194 FNDWMILLQRWEPQIPL----FPFIPFWVQIRGIPFQFLNRGVVEHIGRALGQVLDTDFN 249
Query: 205 YEYPDKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWIDFRYENLPQFCFACGLIGHTEA 264
E + ++ ++ ++ P++ + + FRYE L FC CG++ H
Sbjct: 250 VEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNTLLRFRYERLRGFCEVCGMLTHDFG 309
Query: 265 NCKLHD 270
C + +
Sbjct: 310 ACLIQN 315
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 66.6 bits (161), Expect = 1e-09
Identities = 42/184 (22%), Positives = 76/184 (40%), Gaps = 2/184 (1%)
Query: 85 SILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPW 144
S++ V+ + + ++ + +W P I F +E ++R PW
Sbjct: 38 SLVVTTVNPRKQNLRALIGQMPRVWGFPDSCVGRIIDKGRVQFKFQSEEAMNLVLRRGPW 97
Query: 145 FFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASEL 204
F + L +H W ++ E + P WVQ+ G+P T M +G+ +G V +
Sbjct: 98 SFNDWMLSIHRWYPNLS--EAEMKIIPFWVQITGIPLLFLTNAMARCVGNRLGHVADVDF 155
Query: 205 YEYPDKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWIDFRYENLPQFCFACGLIGHTEA 264
E + +++++N + P++ A I FR+E L FC CG + H
Sbjct: 156 DENSNHTGFVRVRINWNLDDPLRFQRNFQFADGENTVIKFRFERLRNFCTKCGSLKHDIK 215
Query: 265 NCKL 268
C L
Sbjct: 216 VCTL 219
>gb|AAC62785.1| F11O4.11 [Arabidopsis thaliana] gi|7268192|emb|CAB77719.1| putative
transposon protein [Arabidopsis thaliana]
gi|7485382|pir||T01945 hypothetical protein F11O4.11 -
Arabidopsis thaliana
Length = 577
Score = 66.6 bits (161), Expect = 1e-09
Identities = 51/194 (26%), Positives = 82/194 (41%), Gaps = 9/194 (4%)
Query: 74 DIQERLEECQNSILGKIVSEKAIHRNSIQNALSNIWCNPKGFRV-EHIGDKLFHFFMDEQ 132
D E ++E +++G + + A S+ LSN W N KG +G F F + +
Sbjct: 28 DNSELIQENSLTLMGILTNPSAQRLWSLIPFLSNRW-NLKGKATGSDLGRGCFQFRFEYE 86
Query: 133 EDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQMGIKI 192
ED ++++ P+ F +I+ W+ I P W++L+GLP K+M I
Sbjct: 87 EDLQKVLDNRPYHFGQWMVILQRWKPVISPSFPS--EIPFWIELQGLPMHYWIKEMLYAI 144
Query: 193 GSSIGTVLASELYEYPDKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWIDFRYENLPQF 252
G G V+ E+ KIKV + PI + + Y+NL
Sbjct: 145 GKEAGEVVDHEI-----SPAAAKIKVLINGLQPITKETVVEFPDGSEALVYLEYKNLKSH 199
Query: 253 CFACGLIGHTEANC 266
C C + H EA+C
Sbjct: 200 CHHCQRLSHAEADC 213
>gb|AAR01703.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|31126709|gb|AAP44632.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|50916645|ref|XP_468719.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 813
Score = 66.2 bits (160), Expect = 1e-09
Identities = 50/210 (23%), Positives = 91/210 (42%), Gaps = 39/210 (18%)
Query: 61 TAETDSFIYYDDSDIQERLEECQNSILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHI 120
T E ++ + D D +E + ++GK++S +H ++ A+ NP G ++ I
Sbjct: 16 TTEEENVAEFSDDDETGDPQEVEWMLVGKVLSPAIVHATTVFRAMKPARGNPYGLKIRSI 75
Query: 121 GDKLFHFFMDE---QEDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLR 177
+K + F+ + + D +R + G+PW +LE
Sbjct: 76 DEKADNIFVTKFKVERDLQRALGGSPWM------------------NLE----------- 106
Query: 178 GLPTQCRTKQMGIKIGSSIGTVLASELYEYPDKKL---IIKIKVNLAVSTPIKAGIYIGS 234
PT+ K G +G V E+ D K ++ +V + V+ ++ G+ + +
Sbjct: 107 -PPTRLDDKHRGELAMGLVGVVRKLEVDS--DGKASGPYLRGRVAIVVAKSLRRGMLLKT 163
Query: 235 AKDGA-HWIDFRYENLPQFCFACGLIGHTE 263
KD A W +YE LP +C ACG++GH E
Sbjct: 164 KKDAAPEWFYLQYEKLPYYCLACGIVGHLE 193
>gb|AAV43905.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|55167960|gb|AAV43829.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 796
Score = 65.9 bits (159), Expect = 2e-09
Identities = 42/195 (21%), Positives = 86/195 (43%), Gaps = 7/195 (3%)
Query: 71 DDSDIQERLEECQNSI----LGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKLFH 126
+D +++E L+E + L ++ +EK+ ++ ++ + W K + D LF
Sbjct: 46 EDVELEEDLKELEADARWLALARVHTEKSFSHGALFASMRSAWNCAKEVDFRSMKDNLFS 105
Query: 127 FFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTK 186
++ D +R++ PW FR +++ + + S+ P WVQ+ L + RT
Sbjct: 106 IQLNCLADWERVMEEGPWIFRGCPVLLAEYDGWSEIESVVLETYPTWVQIHDLKEKIRTG 165
Query: 187 QMGIKIGSSIGTVLASELYEYPDKKLIIKIKVNLAVSTPIKAGIYIGSAKDGAHWIDFRY 246
+ ++ GTV+ + ++++V + V +P + K + Y
Sbjct: 166 SIATQLVRKAGTVIKLDEASVKGSGDGVRVRVKVDVPSPASRSTTLNKKK---WFFRLMY 222
Query: 247 ENLPQFCFACGLIGH 261
E + FC CGL+GH
Sbjct: 223 EKMLVFCGICGLVGH 237
>gb|AAD24602.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|25411731|pir||A84543 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana gi|15227280|ref|NP_179260.1| hypothetical
protein [Arabidopsis thaliana]
Length = 240
Score = 64.3 bits (155), Expect = 5e-09
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 3/218 (1%)
Query: 50 NDPTEETVTEDTAETDSFIYYDDSDIQERLEECQNSILGKIVSEKAIHRNSIQNALSNIW 109
N ++ + E T DS + + +E S++G+ ++ ++ + IW
Sbjct: 2 NMELDKAIFEMTINDDSPLILSNQPQLSSIERNSCSLIGRFLNPSHQRMSNWILDMPRIW 61
Query: 110 CNPKGFRVEHIGDKLFHFFMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRH 169
R + + F FF +D I++ W +I+ W L
Sbjct: 62 RIYSRVRGVALSQERFQFFYKSNDDLLEILKTGVWTQDEWCVIMDRWVEKPPEEYLMI-- 119
Query: 170 APIWVQLRGLPTQCRTKQMGIKIGSSIGTVLASEL-YEYPDKKLIIKIKVNLAVSTPIKA 228
PIW++LR +P T++ KI +G V+ EL E + ++++VNL V P++
Sbjct: 120 LPIWIRLRNIPVNYYTEETIKKIAGCVGQVVKVELDLEKSQAQDYVRVQVNLDVRNPLRN 179
Query: 229 GIYIGSAKDGAHWIDFRYENLPQFCFACGLIGHTEANC 266
+ + F YE + + CF C + H +A+C
Sbjct: 180 SKSVQVPSGEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>gb|AAD17396.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|25411641|pir||A84530 probable Ta11-like
non-LTR retroelement protein [imported] - Arabidopsis
thaliana gi|15226543|ref|NP_179154.1| zinc finger
protein, putative [Arabidopsis thaliana]
Length = 483
Score = 63.5 bits (153), Expect = 9e-09
Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 11/223 (4%)
Query: 70 YDDSDIQERLEECQN--SILGKIVSEKAIHRNSIQNALSNIWCNPKGFRVEHIGDKLFHF 127
++ D+ E L +N S++G++++ ++ + W + + ++ F F
Sbjct: 17 FEMPDLPEYLSSERNKFSLIGRVLNPACQPMKNLLRNMPRKWQKEGKVKGIALNNERFQF 76
Query: 128 FMDEQEDTKRIIRGNPWFFRNSWLIVHPWRRDIDARSLEFRHAPIWVQLRGLPTQCRTKQ 187
D + D + ++ F + ++V W + L R+ +WVQ+ +P T +
Sbjct: 77 IFDSEHDLEEVLAKGVHTFNDWSIVVDRWYENPPDDYL--RYMLLWVQIWNIPVNYNTAK 134
Query: 188 MGIKIGSSIGTVLASELYEYPDKKLI---IKIKVNLAVSTPIKAGIYIGSAKDGAHWIDF 244
K+G IG V E+ P+ K I +++KV VS P++ + G+ ++F
Sbjct: 135 AITKLGDLIGEV--KEVVFNPELKQIREFVRVKVLFDVSRPLRRSKVVNFRNGGSATVNF 192
Query: 245 RYENLPQFCFACGLIGHTEANCKL--HDTRTNAESRNKNVLGP 285
YE + + C+ C + H + C + + A +R K ++ P
Sbjct: 193 HYERIQKRCYECQRLTHEKDVCPILVKARQDLATARRKGIIIP 235
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 662,551,758
Number of Sequences: 2540612
Number of extensions: 27901016
Number of successful extensions: 103791
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 103626
Number of HSP's gapped (non-prelim): 153
length of query: 361
length of database: 863,360,394
effective HSP length: 129
effective length of query: 232
effective length of database: 535,621,446
effective search space: 124264175472
effective search space used: 124264175472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)
Medicago: description of AC144807.8