BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144807.5 + phase: 0
(112 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR24731.1| At1g48200 [Arabidopsis thaliana] gi|38603890|gb|A... 92 2e-18
gb|AAF79517.1| F21D18.7 [Arabidopsis thaliana] 92 2e-18
dbj|BAD69041.1| unknown protein [Oryza sativa (japonica cultivar... 68 6e-11
ref|NP_143104.1| hypothetical protein PH1208 [Pyrococcus horikos... 34 0.97
ref|ZP_00143631.1| ATP-dependent DNA helicase pcrA [Fusobacteriu... 33 1.7
ref|XP_325013.1| predicted protein [Neurospora crassa] gi|289261... 32 3.7
ref|NP_326042.1| hypothetical protein MYPU_2110 [Mycoplasma pulm... 32 4.8
ref|NP_968674.1| hypothetical protein Bd1807 [Bdellovibrio bacte... 32 4.8
ref|ZP_00054344.1| COG2199: FOG: GGDEF domain [Magnetospirillum ... 32 4.8
gb|AAW40669.1| conserved hypothetical protein [Cryptococcus neof... 31 6.3
emb|CAB79892.1| putative protein [Arabidopsis thaliana] gi|32818... 31 6.3
emb|CAF32691.1| variable membrane protein precursor [Mycoplasma ... 31 6.3
ref|YP_080303.1| conserved protein YteR [Bacillus licheniformis ... 31 8.2
emb|CAB88178.1| conserved hypothetical protein SCC30.08c [Strept... 31 8.2
>gb|AAR24731.1| At1g48200 [Arabidopsis thaliana] gi|38603890|gb|AAR24690.1|
At1g48200 [Arabidopsis thaliana]
gi|30694266|ref|NP_175254.2| expressed protein
[Arabidopsis thaliana]
Length = 118
Score = 92.4 bits (228), Expect = 2e-18
Identities = 48/91 (52%), Positives = 63/91 (68%), Gaps = 2/91 (2%)
Query: 5 HKIVDIAKRASENNTVINVGLGAVFAILGARSYNQQKIIEALEAEKDSLTKTNKSIRNTL 64
+KI A NN VIN LG F +LG RS QQK +EAL +K+SL K+NK+++ T+
Sbjct: 3 NKIAMFLSEAMNNNAVINTCLGVSFVVLGLRSDKQQKYVEALAEQKESLFKSNKAMKLTM 62
Query: 65 WDWKQQLYAEAAS--DSAPVPLARLYEIYGE 93
W+WKQQL+AEAAS ++A VPL+ L IYGE
Sbjct: 63 WEWKQQLFAEAASAGNAAVVPLSTLKAIYGE 93
>gb|AAF79517.1| F21D18.7 [Arabidopsis thaliana]
Length = 254
Score = 92.4 bits (228), Expect = 2e-18
Identities = 48/91 (52%), Positives = 63/91 (68%), Gaps = 2/91 (2%)
Query: 5 HKIVDIAKRASENNTVINVGLGAVFAILGARSYNQQKIIEALEAEKDSLTKTNKSIRNTL 64
+KI A NN VIN LG F +LG RS QQK +EAL +K+SL K+NK+++ T+
Sbjct: 3 NKIAMFLSEAMNNNAVINTCLGVSFVVLGLRSDKQQKYVEALAEQKESLFKSNKAMKLTM 62
Query: 65 WDWKQQLYAEAAS--DSAPVPLARLYEIYGE 93
W+WKQQL+AEAAS ++A VPL+ L IYGE
Sbjct: 63 WEWKQQLFAEAASAGNAAVVPLSTLKAIYGE 93
>dbj|BAD69041.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|55297063|dbj|BAD68632.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 117
Score = 67.8 bits (164), Expect = 6e-11
Identities = 32/73 (43%), Positives = 46/73 (62%)
Query: 29 FAILGARSYNQQKIIEALEAEKDSLTKTNKSIRNTLWDWKQQLYAEAASDSAPVPLARLY 88
F +LG RS+ QQ I+ LEA K SL N ++ + +W W+++L+A AA+ S P+ +RL
Sbjct: 29 FVVLGWRSWEQQHEIDELEARKASLRAANTAMSSAMWAWREELFALAAAPSPPISASRLR 88
Query: 89 EIYGEAAPPQQSA 101
IYGE PP A
Sbjct: 89 VIYGEEQPPASPA 101
>ref|NP_143104.1| hypothetical protein PH1208 [Pyrococcus horikoshii OT3]
gi|3257625|dbj|BAA30308.1| 250aa long hypothetical
protein [Pyrococcus horikoshii OT3]
gi|7448431|pir||B71064 hypothetical protein PH1208 -
Pyrococcus horikoshii
Length = 250
Score = 33.9 bits (76), Expect = 0.97
Identities = 29/84 (34%), Positives = 39/84 (45%), Gaps = 4/84 (4%)
Query: 8 VDIAKRASENNTVINVGLGAVFAILGARSYNQQKIIEALEAEKDS-LTKTNKSIRNTLWD 66
V++AK SEN I + G VF I R ++ IE L AE DS K I+N W
Sbjct: 159 VELAKEISENGHFIGIVTGIVF-IPEVRKVAEKMDIEGLLAETDSPYMSPYKGIKNKPWF 217
Query: 67 WKQQLYAEAASDSAPVPLARLYEI 90
K + E S +P+ + EI
Sbjct: 218 VK--IVLEELSKIKEIPIEEVEEI 239
>ref|ZP_00143631.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
vincentii ATCC 49256] gi|27887718|gb|EAA24794.1|
ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 693
Score = 33.1 bits (74), Expect = 1.7
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 21/110 (19%)
Query: 5 HKIVDIAKRASENNTVINVGLGAVFAILGAR---------SYNQQKIIEALEAEKDSLT- 54
+KI+D+ R S N V+ +++ GA +YN KII+ E + + T
Sbjct: 182 YKIIDLIARKSSNLCVVGDENQSIYGFRGANILNILNFETNYNNAKIIKLEENYRSTTTI 241
Query: 55 --------KTNKSIRN-TLW--DWKQQLYAEAASDSAPVPLARLYEIYGE 93
K NKS R+ LW + K L A D+A ++R+ EI E
Sbjct: 242 LDAANELIKNNKSSRDKKLWTQNGKGDLIKVLACDNARDEVSRIIEIIKE 291
>ref|XP_325013.1| predicted protein [Neurospora crassa] gi|28926155|gb|EAA35140.1|
predicted protein [Neurospora crassa]
Length = 2202
Score = 32.0 bits (71), Expect = 3.7
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 18/80 (22%)
Query: 37 YNQQKIIEALEAEKDSLTKTNKS-------------IRNTLWDWKQQLYAEAASDSAPV- 82
Y+ +++EA + + D+LT T +S + ++ W + + A D APV
Sbjct: 1495 YSYDQVVEATKRQWDALTSTARSNYSNKAFAAAQHPLDKGIFTWLEDTFKRVAKDKAPVS 1554
Query: 83 --PLARLYEIYGEAA--PPQ 98
P A+ Y G ++ PPQ
Sbjct: 1555 STPAAQNYSASGNSSSEPPQ 1574
>ref|NP_326042.1| hypothetical protein MYPU_2110 [Mycoplasma pulmonis UAB CTIP]
gi|14089624|emb|CAC13384.1| unknown; predicted coding
region [Mycoplasma pulmonis] gi|25376425|pir||C90538
hypothetical protein MYPU_2110 [imported] - Mycoplasma
pulmonis (strain UAB CTIP)
Length = 3216
Score = 31.6 bits (70), Expect = 4.8
Identities = 17/55 (30%), Positives = 34/55 (60%), Gaps = 3/55 (5%)
Query: 18 NTVINVGLGAVF-AILGARSYNQQKIIEALEAEKDSLTKTNKSIRNTLWDWKQQL 71
N+++ +G A ++L + S +Q + AL+ ++ K N SI+ T+W+WK++L
Sbjct: 2741 NSLVEIGPNAFKNSVLTSLSGLEQTKLSALK--ENVFEKANDSIKTTIWNWKKEL 2793
>ref|NP_968674.1| hypothetical protein Bd1807 [Bdellovibrio bacteriovorus HD100]
gi|39575499|emb|CAE79667.1| thrS [Bdellovibrio
bacteriovorus HD100]
Length = 416
Score = 31.6 bits (70), Expect = 4.8
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 23/92 (25%)
Query: 4 VHKIVDIAKRASENNTVINVGLGAVFAILGARSYNQQKIIEALEAEKDSLTKTNKSIRNT 63
+HK++++ ++A + ILG Y + ++ +EAE+ S K + N
Sbjct: 173 IHKVLEMYQKA--------------YRILGISDY-RLRLSRGVEAEEAS----QKYVANP 213
Query: 64 LWDWKQQLYAEAASDSAPVPLARLYEIYGEAA 95
LWDW + + E +S +E GEAA
Sbjct: 214 LWDWAEGILREVLVESG----LPFFEAPGEAA 241
>ref|ZP_00054344.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
Length = 594
Score = 31.6 bits (70), Expect = 4.8
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 10/63 (15%)
Query: 23 VGLGAVFAILGARSY----NQQKIIEALEAEKDSLTKTNKSIRNTLWDWKQQLYAEAASD 78
+G G V A+L +S+ +Q++++ ALE EK+ L N+ + W ++ A D
Sbjct: 243 IGWGVVSALLTTKSFASAFSQEQLMRALEQEKELLDALNREL------WAERQLARTTLD 296
Query: 79 SAP 81
+ P
Sbjct: 297 ALP 299
>gb|AAW40669.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21] gi|50260763|gb|EAL23413.1|
hypothetical protein CNBA0630 [Cryptococcus neoformans
var. neoformans B-3501A] gi|58258151|ref|XP_566488.1|
conserved hypothetical protein [Cryptococcus neoformans
var. neoformans JEC21]
Length = 157
Score = 31.2 bits (69), Expect = 6.3
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 25/107 (23%)
Query: 8 VDIAKRASENNTVINVGLGAVFAILGARSYNQQKIIEALEAEKDSLTKTNKSIRNTLWDW 67
VD AK ++ G+G V ++ G + +Q+K T+ N WD+
Sbjct: 56 VDAAKAQKAGAATVDSGIGKVKSVFGYVTGDQEK-----------QTEGNTQAEKAQWDY 104
Query: 68 KQQLYAEAASDS-APVPL-------ARLYEIYGEAA-PPQQSAPGNL 105
KQ A SDS A +P+ +L + G AA P++ GN+
Sbjct: 105 KQ-----ATSDSIAAIPIPSVEGAKGKLESVVGMAAEDPEKQKEGNV 146
>emb|CAB79892.1| putative protein [Arabidopsis thaliana]
gi|3281854|emb|CAA19749.1| putative protein
[Arabidopsis thaliana] gi|15236063|ref|NP_194902.1|
hypothetical protein [Arabidopsis thaliana]
gi|7486332|pir||T05096 hypothetical protein F28M20.70 -
Arabidopsis thaliana
Length = 171
Score = 31.2 bits (69), Expect = 6.3
Identities = 21/81 (25%), Positives = 39/81 (47%), Gaps = 15/81 (18%)
Query: 27 AVFAILGARSYNQQKIIEALEAEKDSLTKTNKSIRNTLWDWKQQLYAEAASDSAP----- 81
A+ +L + NQ ++ EA+EA +L + + R+ + DW ++LY ++ S P
Sbjct: 7 AIMYLLSLETINQSEV-EAVEA---ALPSADSASRSNIVDWAEKLYGQSISAVTPGVKNL 62
Query: 82 ------VPLARLYEIYGEAAP 96
+P+AR E + P
Sbjct: 63 LSSDQQLPVARTVEALTDGKP 83
>emb|CAF32691.1| variable membrane protein precursor [Mycoplasma hominis]
Length = 1828
Score = 31.2 bits (69), Expect = 6.3
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 10 IAKRASENNTVINVGLGAVFAILGARSYNQQKIIEALEAEKDSLTKTNKSIRNTLWDWKQ 69
I K ++ N+ + A A+ A+S Q+I EAE ++LTK + + +
Sbjct: 1317 ITKNKADKNSTLEEITNATKALEDAKSKLDQEIKTKKEAEFNNLTKAKTELSDLITSSSN 1376
Query: 70 QLYAEAASDS 79
Q A+A SD+
Sbjct: 1377 QAPADAISDA 1386
>ref|YP_080303.1| conserved protein YteR [Bacillus licheniformis ATCC 14580]
gi|52004723|gb|AAU24665.1| conserved protein YteR
[Bacillus licheniformis ATCC 14580]
gi|52786890|ref|YP_092719.1| YteR [Bacillus
licheniformis ATCC 14580] gi|52349392|gb|AAU42026.1|
YteR [Bacillus licheniformis DSM 13]
Length = 373
Score = 30.8 bits (68), Expect = 8.2
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 25 LGAVFAILGARSYNQQKIIEALEAEKDSLTKTNKSIRNTL----WDWKQQL-YAEAASDS 79
+G FA+ AR++N+ ++ + + E+ + K K R L WD K+Q+ +A+ S
Sbjct: 144 MGGPFALKYARAFNEPELYDKVILEEKLMRKHTKDCRTGLYYHAWDEKRQMPWADPVSGC 203
Query: 80 AP 81
+P
Sbjct: 204 SP 205
>emb|CAB88178.1| conserved hypothetical protein SCC30.08c [Streptomyces coelicolor
A3(2)] gi|21220769|ref|NP_626548.1| hypothetical protein
SCO2300 [Streptomyces coelicolor A3(2)]
Length = 196
Score = 30.8 bits (68), Expect = 8.2
Identities = 20/88 (22%), Positives = 41/88 (45%)
Query: 2 EFVHKIVDIAKRASENNTVINVGLGAVFAILGARSYNQQKIIEALEAEKDSLTKTNKSIR 61
+ V ++++ + A E + +GAV + + + +E L+AE S+TK + +
Sbjct: 65 DVVLEVMERRESAQERVAELTERVGAVQGKIDDATARRDAAVEELDAEITSVTKEREVVA 124
Query: 62 NTLWDWKQQLYAEAASDSAPVPLARLYE 89
++ D LY + V A+LY+
Sbjct: 125 GSVPDDLLTLYGKLREQQGGVGAAKLYQ 152
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,568,594
Number of Sequences: 2540612
Number of extensions: 5923814
Number of successful extensions: 20747
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 20740
Number of HSP's gapped (non-prelim): 14
length of query: 112
length of database: 863,360,394
effective HSP length: 88
effective length of query: 24
effective length of database: 639,786,538
effective search space: 15354876912
effective search space used: 15354876912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144807.5