BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144765.5 - phase: 0 /pseudo
(443 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 320 4e-86
emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07... 275 3e-72
gb|AAP43915.1| integrase [Gossypium herbaceum] 273 1e-71
gb|AAP52358.1| putative retroelement [Oryza sativa (japonica cul... 270 9e-71
gb|AAP53504.1| putative polyprotein [Oryza sativa (japonica cult... 269 1e-70
gb|AAP52850.1| putative retroelement [Oryza sativa (japonica cul... 268 2e-70
gb|AAP52583.1| putative polyprotein [Oryza sativa (japonica cult... 268 2e-70
emb|CAE05815.1| OSJNBa0028M15.7 [Oryza sativa (japonica cultivar... 268 2e-70
emb|CAD40396.3| OSJNBa0004L19.15 [Oryza sativa (japonica cultiva... 268 2e-70
emb|CAD39932.2| OSJNBa0091C12.10 [Oryza sativa (japonica cultiva... 268 2e-70
gb|AAV44060.1| putative polyprotein [Oryza sativa (japonica cult... 268 2e-70
gb|AAL59229.1| gag-pol [Zea mays] 268 2e-70
ref|XP_474891.1| OSJNBa0021F22.18 [Oryza sativa (japonica cultiv... 268 3e-70
gb|AAP52927.1| putative retroelement [Oryza sativa (japonica cul... 268 3e-70
gb|AAP52853.1| putative retroelement [Oryza sativa (japonica cul... 268 3e-70
emb|CAE03296.2| OSJNBb0046P18.12 [Oryza sativa (japonica cultiva... 268 3e-70
ref|NP_918193.1| putative retroelement polyprotein [Oryza sativa... 268 3e-70
emb|CAE02563.2| OSJNBa0006M15.6 [Oryza sativa (japonica cultivar... 268 3e-70
gb|AAP52881.1| putative retroelement [Oryza sativa (japonica cul... 267 4e-70
gb|AAP52848.1| putative retroelement [Oryza sativa (japonica cul... 267 4e-70
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 320 bits (821), Expect = 4e-86
Identities = 158/269 (58%), Positives = 200/269 (73%), Gaps = 2/269 (0%)
Query: 1 NFGLNYHPDKAKVVADALSRKTLHMSAL-MVKEFELLEQFRDLSLVCELSSQSVQLGMLK 59
+F L YHP KA VVADALSR+++ +S+L M ++ EL E FRDL L E + ++ GM+K
Sbjct: 211 DFTLQYHPGKANVVADALSRRSVSVSSLIMARQQELWEAFRDLHLNVEFAPGILKFGMIK 270
Query: 60 INSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLI 119
I+S L I +Q DV + + Q + ++FK+ VLR GRIC+P+ ++K I
Sbjct: 271 ISSGLLEDIANSQD-DVLIQEKRNLIVQGKTTEFKIGADNVLRCNGRICVPEITAMRKTI 329
Query: 120 LEEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLT 179
LEE HKS LSIH GATKMYQDL++ +WW G+KK VA +V CLTCQK+KVEHQRPAG+L
Sbjct: 330 LEEAHKSKLSIHPGATKMYQDLRQNYWWPGMKKHVAEYVSTCLTCQKAKVEHQRPAGMLQ 389
Query: 180 PLDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYI 239
PLD+PEWKWDSISMDF++ LP T R +DSIWV+VDRLTKSAHF+P+ +Y V QL EIYI
Sbjct: 390 PLDIPEWKWDSISMDFITGLPKTRRKNDSIWVIVDRLTKSAHFLPVRTTYKVDQLTEIYI 449
Query: 240 QNIVKLHGVPSSIVSDRDPRFTSRFWRSL 268
IV+LHGVPSSIVSDRDP+FTS FW +L
Sbjct: 450 AEIVRLHGVPSSIVSDRDPKFTSHFWGAL 478
>emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07863 probable
polyprotein - pineapple retrotransposon dea1 (fragment)
Length = 871
Score = 275 bits (702), Expect = 3e-72
Identities = 135/265 (50%), Positives = 180/265 (66%), Gaps = 1/265 (0%)
Query: 6 YHPDKAKVVADALSRKTLHMSAL-MVKEFELLEQFRDLSLVCELSSQSVQLGMLKINSDF 64
YHP KA VVADALSRK++ A+ +V + L+EQ + L L ++L L +
Sbjct: 413 YHPGKANVVADALSRKSMENLAMHVVTQPRLIEQMKRLELEIVTPDTPMRLMTLVVQPTL 472
Query: 65 LGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLILEEGH 124
L I+E Q DV+ + DF +D G++RFRGRIC+P + +K+ IL+E H
Sbjct: 473 LDRIKEKQASDVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSGIKEDILQEAH 532
Query: 125 KSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTPLDVP 184
++ +IH G TKMY+DLK L+WW G+KKDV FV CLTCQ+ K EH+ PAG L L +P
Sbjct: 533 RAPYAIHPGGTKMYKDLKLLYWWPGIKKDVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIP 592
Query: 185 EWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQNIVK 244
WKW+ I+MDFV+ LP + GHD+IWV+VDRLTKSAHFIPI+ ++ +LA++Y+ IV+
Sbjct: 593 VWKWEKITMDFVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGERLAQVYLDEIVR 652
Query: 245 LHGVPSSIVSDRDPRFTSRFWRSLQ 269
LHGVP+SIVSDRD RF S FWRSLQ
Sbjct: 653 LHGVPTSIVSDRDTRFVSHFWRSLQ 677
>gb|AAP43915.1| integrase [Gossypium herbaceum]
Length = 350
Score = 273 bits (697), Expect = 1e-71
Identities = 132/266 (49%), Positives = 178/266 (66%), Gaps = 13/266 (4%)
Query: 4 LNYHPDKAKVVADALSRKTLHMSALMVKEFELLEQFRDLSLVCELSSQSVQLGMLKINSD 63
++YHP KA +VADALSRK+L R +++ + +V + LK
Sbjct: 83 IDYHPGKANMVADALSRKSLFA-------------LRAMNVYLSILPDNVLVAELKAKPL 129
Query: 64 FLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLILEEG 123
IREAQ+VD + + +ES+F++D+ LRFR R+C+P N EL +IL E
Sbjct: 130 LTHQIREAQKVDEELLAKRAECVLNKESEFQIDDDDCLRFRSRLCVPKNSELILIILNEA 189
Query: 124 HKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTPLDV 183
H S ++IH G+TKMY DLK+ FWW G+K+D+ FV CL CQ+ K EHQ P+GLL P+ +
Sbjct: 190 HCSRMAIHPGSTKMYNDLKRRFWWHGMKRDIFDFVSRCLICQQVKAEHQVPSGLLQPITI 249
Query: 184 PEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQNIV 243
PEWKWD ++MDFVS LP ++ D+IWVVVDRLTKSAHFIP+ + + +LAE+Y+ IV
Sbjct: 250 PEWKWDRVTMDFVSGLPLSASKKDAIWVVVDRLTKSAHFIPVRTDFSLDKLAELYVSQIV 309
Query: 244 KLHGVPSSIVSDRDPRFTSRFWRSLQ 269
+LHGVP S+VSDRDPRFTSRFW+ LQ
Sbjct: 310 RLHGVPISVVSDRDPRFTSRFWKKLQ 335
>gb|AAP52358.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531538|ref|NP_920071.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|20043037|gb|AAM08845.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1728
Score = 270 bits (689), Expect = 9e-71
Identities = 141/269 (52%), Positives = 176/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVK--EFELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + + L L+
Sbjct: 1261 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPLELNQQMEALNL--SIVGRGF-LAALEA 1316
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 1317 KPTLLDQIREAQKNDPDMRGLLKNMKQGKATGFTEDEHGTLWNGNRVCVPDNRELKQLIL 1376
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLKK +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1377 QEAHESPYSIHPGSTKMYLDLKKKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1436
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1437 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1496
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1497 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1525
>gb|AAP53504.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533830|ref|NP_921217.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18652533|gb|AAL77166.1| Putative polyprotein [Oryza
sativa]
Length = 816
Score = 269 bits (688), Expect = 1e-70
Identities = 141/269 (52%), Positives = 177/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + S+ L L+
Sbjct: 272 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVSRGF-LATLEA 327
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 328 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDNRELKQLIL 387
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 388 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 447
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 448 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 507
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 508 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 536
>gb|AAP52850.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532522|ref|NP_920563.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|13992688|gb|AAK51582.1| Putative retroelement [Oryza
sativa]
Length = 2447
Score = 268 bits (686), Expect = 2e-70
Identities = 141/269 (52%), Positives = 178/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + S+ L L+
Sbjct: 1903 GIHYHPGKANVVADALSRKS-HCNTLGVRGIPPELNQQMEALNL--SIVSRGF-LATLEA 1958
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R R+C+PD ELK+LIL
Sbjct: 1959 KPTLLDQIREAQKNDPDMRGLLKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLIL 2018
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 2019 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 2078
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 2079 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 2138
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR+ +FTS FW+ LQ
Sbjct: 2139 RIVSLHGVPKKIVSDRESQFTSHFWKKLQ 2167
Score = 164 bits (416), Expect = 4e-39
Identities = 96/265 (36%), Positives = 140/265 (52%), Gaps = 32/265 (12%)
Query: 4 LNYHPDKAKVVADALSRKTLHMSALMVKEFELLEQFRDLSLVCELSSQSVQLGMLKINSD 63
+ + K ++ADALSR+ ++ L K F L
Sbjct: 1112 IKHKKGKENIIADALSRRYTLLTQLDYKIFGL---------------------------- 1143
Query: 64 FLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLILEEG 123
+I++ D F D+++ + V G + ++CIP + ++ L+L+E
Sbjct: 1144 --ETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASS-VRLLLLQEA 1200
Query: 124 HKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTPLDV 183
H L H GA K + L F+W +++DV RFV C TCQK+K P GL PL V
Sbjct: 1201 HGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAK-SRLHPHGLYMPLPV 1259
Query: 184 PEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQNIV 243
P W+ ISMDFV LP T RG DSI+VVVDR +K AHFIP + + + +A+++ + IV
Sbjct: 1260 PTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIV 1319
Query: 244 KLHGVPSSIVSDRDPRFTSRFWRSL 268
+LHGVP++IVSDRD +F S FWR+L
Sbjct: 1320 RLHGVPNTIVSDRDTKFLSHFWRTL 1344
>gb|AAP52583.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531988|ref|NP_920296.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857586|gb|AAN09860.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1820
Score = 268 bits (686), Expect = 2e-70
Identities = 141/269 (52%), Positives = 177/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + S+ L L+
Sbjct: 1276 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVSRGF-LAALEA 1331
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 1332 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDNRELKQLIL 1391
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1392 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1451
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1452 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1511
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1512 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1540
>emb|CAE05815.1| OSJNBa0028M15.7 [Oryza sativa (japonica cultivar-group)]
gi|50930937|ref|XP_474996.1| OSJNBa0028M15.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1822
Score = 268 bits (686), Expect = 2e-70
Identities = 140/269 (52%), Positives = 176/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVK--EFELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + + L L+
Sbjct: 1278 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPLELSQQMEALNL--SIVGRGF-LAALEA 1333
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 1334 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDNRELKQLIL 1393
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1394 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1453
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1454 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1513
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1514 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1542
>emb|CAD40396.3| OSJNBa0004L19.15 [Oryza sativa (japonica cultivar-group)]
Length = 1821
Score = 268 bits (686), Expect = 2e-70
Identities = 140/269 (52%), Positives = 177/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L ++ EL +Q L+L + S+ L L+
Sbjct: 1277 GIHYHPGKANVVADALSRKS-HCNTLNIRGIPPELNQQMAALNL--SIVSRGF-LAALEA 1332
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 1333 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDNRELKQLIL 1392
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1393 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1452
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1453 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1512
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1513 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1541
>emb|CAD39932.2| OSJNBa0091C12.10 [Oryza sativa (japonica cultivar-group)]
gi|50921849|ref|XP_471285.1| OSJNBa0091C12.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1461
Score = 268 bits (686), Expect = 2e-70
Identities = 140/269 (52%), Positives = 176/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVK--EFELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + + L L+
Sbjct: 917 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPLELSQQMEALNL--SIVGRGF-LAALEA 972
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 973 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDNRELKQLIL 1032
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1033 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1092
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1093 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1152
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1153 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1181
>gb|AAV44060.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|55168118|gb|AAV43985.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1772
Score = 268 bits (686), Expect = 2e-70
Identities = 140/269 (52%), Positives = 177/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V++ EL +Q L+L + + L L+
Sbjct: 1228 GIHYHPGKANVVADALSRKS-HCNTLNVRDIPPELNQQMEALNL--SIVGRGF-LAALEA 1283
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 1284 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDNRELKQLIL 1343
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1344 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1403
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1404 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1463
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1464 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1492
>gb|AAL59229.1| gag-pol [Zea mays]
Length = 1470
Score = 268 bits (686), Expect = 2e-70
Identities = 141/272 (51%), Positives = 178/272 (64%), Gaps = 16/272 (5%)
Query: 4 LNYHPDKAKVVADALSRK------TLH-MSALMVKEFELLEQFRDLSLVCELSSQSVQLG 56
+ YHP KA VVADALSRK T H MS + E E L +L + +V+
Sbjct: 935 IQYHPGKANVVADALSRKGQVNNITTHLMSQELCWEMERL----NLGFL-----NNVEAT 985
Query: 57 MLKINSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELK 116
++++ S IR+ Q+ D K ++ + + DF DEQG + F+ RIC+P+ E L+
Sbjct: 986 VMEVESTLEEEIRKGQESDEKIKEIKALIGLGKAPDFTEDEQGTIWFKKRICVPEIEHLR 1045
Query: 117 KLILEEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAG 176
+LIL E H S SIH G+TKMYQDLK+ +WW GLK+DVA V C CQ+ K EHQRPAG
Sbjct: 1046 QLILREAHDSAYSIHPGSTKMYQDLKEKYWWYGLKRDVATHVALCDVCQRVKAEHQRPAG 1105
Query: 177 LLTPLDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAE 236
LL PL VPEWKW+ ISMDF+ LP T G+DSIWV+VDRLTK AHFIP+ +Y AQLAE
Sbjct: 1106 LLQPLKVPEWKWEEISMDFIVGLPRTRDGYDSIWVIVDRLTKVAHFIPVKTTYSGAQLAE 1165
Query: 237 IYIQNIVKLHGVPSSIVSDRDPRFTSRFWRSL 268
+Y+ IV LHGVP IVSDR +FTSRFW+ L
Sbjct: 1166 LYMSRIVCLHGVPKKIVSDRGTQFTSRFWKRL 1197
>ref|XP_474891.1| OSJNBa0021F22.18 [Oryza sativa (japonica cultivar-group)]
gi|38346485|emb|CAE03724.2| OSJNBa0021F22.18 [Oryza
sativa (japonica cultivar-group)]
Length = 599
Score = 268 bits (685), Expect = 3e-70
Identities = 140/269 (52%), Positives = 177/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALS+K+ H + L V+ EL +Q L+L + + L L+
Sbjct: 55 GIHYHPGKANVVADALSQKS-HCNTLNVRGIPPELSQQMEALNL--SIVGRGF-LAALEA 110
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 111 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDNRELKQLIL 170
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ KVEHQRPAGLL P
Sbjct: 171 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKVEHQRPAGLLQP 230
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 231 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 290
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 291 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 319
>gb|AAP52927.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532676|ref|NP_920640.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22725935|gb|AAN04945.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1825
Score = 268 bits (684), Expect = 3e-70
Identities = 140/269 (52%), Positives = 177/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + S+ L L+
Sbjct: 1281 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVSRGF-LAALEA 1336
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F +E G L R+C+PDN ELK+LIL
Sbjct: 1337 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEEEHGTLWNGNRVCVPDNRELKQLIL 1396
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1397 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1456
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1457 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1516
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1517 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1545
>gb|AAP52853.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532528|ref|NP_920566.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|13992691|gb|AAK51585.1| Putative retroelement [Oryza
sativa]
Length = 1862
Score = 268 bits (684), Expect = 3e-70
Identities = 140/269 (52%), Positives = 176/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + V L L+
Sbjct: 1318 GIHYHPSKANVVADALSRKS-HCNTLNVRGIPPELSQQMEALNL--SIVGHGV-LAALEA 1373
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PD+ ELK+LIL
Sbjct: 1374 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDDRELKQLIL 1433
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1434 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1493
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1494 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1553
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1554 RIVSLHGVPKRIVSDRGSQFTSHFWKKLQ 1582
>emb|CAE03296.2| OSJNBb0046P18.12 [Oryza sativa (japonica cultivar-group)]
gi|38344459|emb|CAE04930.2| OSJNBa0017P10.7 [Oryza sativa
(japonica cultivar-group)] gi|50921967|ref|XP_471344.1|
OSJNBb0046P18.12 [Oryza sativa (japonica cultivar-group)]
Length = 1469
Score = 268 bits (684), Expect = 3e-70
Identities = 141/269 (52%), Positives = 176/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + S+ L L+
Sbjct: 925 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVSRGF-LAALEA 980
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 981 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGTRVCVPDNRELKQLIL 1040
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1041 QEAHESPYSIHPGSTKMYLDLKDKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1100
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1101 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1160
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1161 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1189
>ref|NP_918193.1| putative retroelement polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1796
Score = 268 bits (684), Expect = 3e-70
Identities = 140/269 (52%), Positives = 176/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + + L L+
Sbjct: 1252 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVGRGF-LAALEA 1307
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 1308 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFAEDEHGTLWNGNRVCVPDNRELKQLIL 1367
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1368 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1427
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1428 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1487
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1488 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1516
>emb|CAE02563.2| OSJNBa0006M15.6 [Oryza sativa (japonica cultivar-group)]
gi|32489197|emb|CAE04382.1| OSJNBa0027G07.24 [Oryza
sativa (japonica cultivar-group)]
gi|50924706|ref|XP_472708.1| OSJNBa0027G07.24 [Oryza
sativa (japonica cultivar-group)]
Length = 1635
Score = 268 bits (684), Expect = 3e-70
Identities = 140/269 (52%), Positives = 176/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + + L L+
Sbjct: 1152 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNL--SIVGRGF-LAALEA 1207
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PDN ELK+LIL
Sbjct: 1208 KPTLLDQIREAQKNDPDMRGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDNRELKQLIL 1267
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1268 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1327
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1328 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1387
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1388 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 1416
>gb|AAP52881.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532584|ref|NP_920594.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|21672037|gb|AAM74399.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1821
Score = 267 bits (683), Expect = 4e-70
Identities = 140/269 (52%), Positives = 176/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + V L L+
Sbjct: 1277 GIHYHPGKANVVADALSRKS-HCNTLNVRGIPPELSQQMEALNL--SIVGHGV-LAALEA 1332
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R+C+PD+ ELK+LIL
Sbjct: 1333 KPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDDRELKQLIL 1392
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 1393 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1452
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 1453 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 1512
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 1513 RIVSLHGVPKRIVSDRGSQFTSHFWKKLQ 1541
>gb|AAP52848.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532518|ref|NP_920561.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|13992686|gb|AAK51580.1| Putative retroelement [Oryza
sativa]
Length = 1023
Score = 267 bits (683), Expect = 4e-70
Identities = 141/269 (52%), Positives = 177/269 (65%), Gaps = 6/269 (2%)
Query: 3 GLNYHPDKAKVVADALSRKTLHMSALMVKEF--ELLEQFRDLSLVCELSSQSVQLGMLKI 60
G++YHP KA VVADALSRK+ H + L V+ EL +Q L+L + S+ L L+
Sbjct: 479 GIHYHPGKANVVADALSRKS-HCNTLGVRGIPPELNQQMEALNL--SIVSRGF-LATLEA 534
Query: 61 NSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIPDNEELKKLIL 120
L IREAQ+ D L+ Q + + F DE G L R R+C+PD ELK+LIL
Sbjct: 535 KPTLLDQIREAQKNDPDMRGLLKNMKQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLIL 594
Query: 121 EEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVEHQRPAGLLTP 180
+E H+S SIH G+TKMY DLK+ +WW +K+++A FV C CQ+ K EHQRPAGLL P
Sbjct: 595 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 654
Query: 181 LDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEIYIQ 240
L VPEWKWD I MDF++ LP T G+DSIWVVVDRLTK A FIP+ +Y +LAE+Y
Sbjct: 655 LQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFA 714
Query: 241 NIVKLHGVPSSIVSDRDPRFTSRFWRSLQ 269
IV LHGVP IVSDR +FTS FW+ LQ
Sbjct: 715 RIVSLHGVPKKIVSDRGSQFTSHFWKKLQ 743
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.341 0.148 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 629,157,085
Number of Sequences: 2540612
Number of extensions: 23557939
Number of successful extensions: 81329
Number of sequences better than 10.0: 1530
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 679
Number of HSP's that attempted gapping in prelim test: 78779
Number of HSP's gapped (non-prelim): 1917
length of query: 443
length of database: 863,360,394
effective HSP length: 131
effective length of query: 312
effective length of database: 530,540,222
effective search space: 165528549264
effective search space used: 165528549264
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 77 (34.3 bits)
Medicago: description of AC144765.5