BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144765.20 + phase: 0
(296 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_470288.1| putative pentatricopeptide repeat containing pr... 267 3e-70
emb|CAB89340.1| putative protein [Arabidopsis thaliana] gi|11357... 239 9e-62
ref|NP_197034.2| pentatricopeptide (PPR) repeat-containing prote... 239 9e-62
dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protei... 237 3e-61
ref|NP_910353.1| pentatricopeptide (PPR) repeat-containing prote... 234 2e-60
dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana] g... 232 1e-59
ref|NP_912833.1| unnamed protein product [Oryza sativa (japonica... 229 5e-59
dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protei... 229 5e-59
ref|XP_472363.1| OSJNBb0012E08.2 [Oryza sativa (japonica cultiva... 228 2e-58
ref|XP_477609.1| putative pentatricopeptide (PPR) repeat-contain... 228 2e-58
dbj|BAD42891.1| putative protein [Arabidopsis thaliana] 228 2e-58
dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protei... 228 2e-58
emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana] gi|1... 228 2e-58
gb|AAF79838.1| T6D22.15 [Arabidopsis thaliana] gi|15223099|ref|N... 227 4e-58
emb|CAB79107.1| putative protein (fragment) [Arabidopsis thalian... 226 5e-58
gb|AAF79892.1| Contains similarity to an unknown protein F28A21.... 226 6e-58
ref|NP_173449.1| pentatricopeptide (PPR) repeat-containing prote... 226 6e-58
ref|XP_483554.1| putative pentatricopeptide (PPR) repeat-contain... 226 8e-58
gb|AAD39314.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 225 1e-57
gb|AAF79766.1| T30E16.32 [Arabidopsis thaliana] 225 1e-57
>ref|XP_470288.1| putative pentatricopeptide repeat containing protein [Oryza sativa
(japonica cultivar-group)] gi|19071652|gb|AAL84319.1|
putative pentatricopeptide repeat containing protein
[Oryza sativa (japonica cultivar-group)]
Length = 545
Score = 267 bits (682), Expect = 3e-70
Identities = 136/295 (46%), Positives = 193/295 (65%), Gaps = 5/295 (1%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
+PER+ VSWN MI+G V + ALELF +MQ G KP VT++S+L ACA++G L++G
Sbjct: 235 VPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVG 294
Query: 61 HKIYESLK--VCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLA 118
+++ SL + LGNAL++MY KCG++ A E+F M+ K VS WN++V GLA
Sbjct: 295 QRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLA 354
Query: 119 VHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIV 178
+HG+ E +F +M L G +RPD +TF+ VL+ACSH G+VDK R +F+ M +Y++
Sbjct: 355 LHGHVLESIDMFEKM---LKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVE 411
Query: 179 PDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQ 238
P+ KHYGCMVD+L R GLL+EA++ I T + + V+WRTLL ACR ELA+ + +Q
Sbjct: 412 PNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQ 471
Query: 239 LAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMKESD 293
L K + GDYVLLSNIYA G W E++R MD V ++AG + ++ D
Sbjct: 472 LLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVDGSVKD 526
Score = 73.2 bits (178), Expect = 9e-12
Identities = 64/272 (23%), Positives = 121/272 (43%), Gaps = 24/272 (8%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQN----AGVKPTEVTLISILGACAETGA 56
+P + +N++I G A+ L++ M GV+P ++T +L AC GA
Sbjct: 68 IPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGA 127
Query: 57 LEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIG 116
+ G +++ + + ++++ NAL+ M+ CGNL +A +F+G + W+AM+ G
Sbjct: 128 GDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITG 187
Query: 117 LAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYK 176
A G LF E D V++ ++ A + +G + AR FD + +R
Sbjct: 188 CARRGDIGAARDLFDECPVK-------DLVSWNVMITAYAKRGDMALARELFDQVPER-- 238
Query: 177 IVPDSKHYGCMVDLLSRWGL---LEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAE 233
D + M+ R G E ++ + + +V +LL AC + ++ +
Sbjct: 239 ---DVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQ 295
Query: 234 ISFKQLAKLKQLIDGDYVLLSN----IYAEAG 261
L+ + +G V+L N +YA+ G
Sbjct: 296 RLHSSLSDMFSR-NGFPVVLGNALIDMYAKCG 326
>emb|CAB89340.1| putative protein [Arabidopsis thaliana] gi|11357889|pir||T49965
hypothetical protein F8M21.190 - Arabidopsis thaliana
Length = 514
Score = 239 bits (609), Expect = 9e-62
Identities = 125/298 (41%), Positives = 188/298 (62%), Gaps = 10/298 (3%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHK 62
E++ V+WN+MI+G V+ AL +F EM++AG P VT++S+L ACA G LE G +
Sbjct: 203 EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKR 262
Query: 63 IY-ESLKVCEHKIESYLG----NALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGL 117
++ L+ Y+G NAL++MY KCG++ A E+F G+K + +S WN +++GL
Sbjct: 263 LHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGL 322
Query: 118 AVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKI 177
A+H + E ++F EM+ + P+ VTFIGV++ACSH G VD+ R YF M Y I
Sbjct: 323 ALH-HAEGSIEMFEEMQRL---KVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNI 378
Query: 178 VPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 237
P+ KHYGCMVD+L R G LEEA+ + + + + ++WRTLLGAC+ N EL + + +
Sbjct: 379 EPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANE 438
Query: 238 QLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMKESDRL 295
+L +++ GDYVLLSNIYA G+WD V+++R D V + G S I ++ D+L
Sbjct: 439 KLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE-EDDDKL 495
Score = 69.3 bits (168), Expect = 1e-10
Identities = 65/284 (22%), Positives = 114/284 (39%), Gaps = 22/284 (7%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
+P+ + N ++ G + L++EM+ GV P T +L AC++ G
Sbjct: 38 IPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNG 97
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+ + + Y+ NAL+ + CG+L +A E+F+ W++M G A
Sbjct: 98 FAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKR 157
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G +E +LF EM D+V + ++ C +D AR FD ++ D
Sbjct: 158 GKIDEAMRLFDEMPYK-------DQVAWNVMITGCLKCKEMDSARELFDRFTEK-----D 205
Query: 181 SKHYGCMVDLLSRWGLLEEA---YQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 237
+ M+ G +EA ++ + A VV +LL AC + E +
Sbjct: 206 VVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHI 265
Query: 238 QLAKLKQLIDGDYV------LLSNIYAEAGRWDE-VERLRSEMD 274
+ + + YV L ++YA+ G D +E R D
Sbjct: 266 YILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKD 309
Score = 42.0 bits (97), Expect = 0.021
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 39/186 (20%)
Query: 90 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 149
G L A ++F+ + VS N ++ G A E+ L+TEME+ + PDR TF
Sbjct: 26 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKR---GVSPDRYTFT 82
Query: 150 GVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPF 209
VL ACS K W + K+V R G + Y
Sbjct: 83 FVLKACS------KLEWRSNGFAFHGKVV--------------RHGFVLNEY-------V 115
Query: 210 QNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERL 269
+N+++L+ G + +A F AK ++ + +++ YA+ G+ DE RL
Sbjct: 116 KNALILFHANCG------DLGIASELFDDSAKAHKVA---WSSMTSGYAKRGKIDEAMRL 166
Query: 270 RSEMDY 275
EM Y
Sbjct: 167 FDEMPY 172
>ref|NP_197034.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 548
Score = 239 bits (609), Expect = 9e-62
Identities = 125/298 (41%), Positives = 188/298 (62%), Gaps = 10/298 (3%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHK 62
E++ V+WN+MI+G V+ AL +F EM++AG P VT++S+L ACA G LE G +
Sbjct: 237 EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKR 296
Query: 63 IY-ESLKVCEHKIESYLG----NALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGL 117
++ L+ Y+G NAL++MY KCG++ A E+F G+K + +S WN +++GL
Sbjct: 297 LHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGL 356
Query: 118 AVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKI 177
A+H + E ++F EM+ + P+ VTFIGV++ACSH G VD+ R YF M Y I
Sbjct: 357 ALH-HAEGSIEMFEEMQRL---KVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNI 412
Query: 178 VPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 237
P+ KHYGCMVD+L R G LEEA+ + + + + ++WRTLLGAC+ N EL + + +
Sbjct: 413 EPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANE 472
Query: 238 QLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMKESDRL 295
+L +++ GDYVLLSNIYA G+WD V+++R D V + G S I ++ D+L
Sbjct: 473 KLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE-EDDDKL 529
Score = 69.3 bits (168), Expect = 1e-10
Identities = 65/284 (22%), Positives = 114/284 (39%), Gaps = 22/284 (7%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
+P+ + N ++ G + L++EM+ GV P T +L AC++ G
Sbjct: 72 IPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNG 131
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+ + + Y+ NAL+ + CG+L +A E+F+ W++M G A
Sbjct: 132 FAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKR 191
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G +E +LF EM D+V + ++ C +D AR FD ++ D
Sbjct: 192 GKIDEAMRLFDEMPYK-------DQVAWNVMITGCLKCKEMDSARELFDRFTEK-----D 239
Query: 181 SKHYGCMVDLLSRWGLLEEA---YQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 237
+ M+ G +EA ++ + A VV +LL AC + E +
Sbjct: 240 VVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHI 299
Query: 238 QLAKLKQLIDGDYV------LLSNIYAEAGRWDE-VERLRSEMD 274
+ + + YV L ++YA+ G D +E R D
Sbjct: 300 YILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKD 343
Score = 42.0 bits (97), Expect = 0.021
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 39/186 (20%)
Query: 90 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 149
G L A ++F+ + VS N ++ G A E+ L+TEME+ + PDR TF
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKR---GVSPDRYTFT 116
Query: 150 GVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPF 209
VL ACS K W + K+V R G + Y
Sbjct: 117 FVLKACS------KLEWRSNGFAFHGKVV--------------RHGFVLNEY-------V 149
Query: 210 QNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERL 269
+N+++L+ G + +A F AK ++ + +++ YA+ G+ DE RL
Sbjct: 150 KNALILFHANCG------DLGIASELFDDSAKAHKVA---WSSMTSGYAKRGKIDEAMRL 200
Query: 270 RSEMDY 275
EM Y
Sbjct: 201 FDEMPY 206
>dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa (japonica cultivar-group)]
Length = 517
Score = 237 bits (605), Expect = 3e-61
Identities = 128/290 (44%), Positives = 177/290 (60%), Gaps = 4/290 (1%)
Query: 2 PERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGH 61
PE++ VSWN++I G + ALE+F EM+ AG P E T++S+L CA TG L+ G
Sbjct: 224 PEKDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGR 283
Query: 62 KIYESLKVCEHK-IESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
I+ L + I +GNALV+MY KCG+L A E FN MK V WN+++ GLA H
Sbjct: 284 MIHHQLHLERRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFH 343
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G E+ + F +M E I P+ ++F+ VL ACSH GLV+ + +F M RY I P+
Sbjct: 344 GQAEQSVRFFKKMLEK---RIHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPN 400
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLA 240
++HY C+VD+L R GLL+EAY I+ + S V+WRTLLGACRT N L ++ ++L
Sbjct: 401 ARHYSCIVDMLGRAGLLDEAYAIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLL 460
Query: 241 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMK 290
+ + DYVLLS IYA +G W VE R MD + + AGY+QI+ K
Sbjct: 461 NMNEDASADYVLLSGIYASSGEWLGVETERRSMDRRGIRKAAGYAQIDRK 510
Score = 60.1 bits (144), Expect = 8e-08
Identities = 63/303 (20%), Positives = 110/303 (35%), Gaps = 69/303 (22%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAG-VKPTEVTLISILGACAETGALEI 59
+P + N+M+ G A ++ M A ++P T +L ACA
Sbjct: 59 IPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRA 118
Query: 60 GHKIYESLKVCEHKIESYLGNALVNMYCKCGNLS--------------LAW--------- 96
G +++ ++ ++Y+ NAL+NM+ KCG+L +AW
Sbjct: 119 GRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAA 178
Query: 97 --------EIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTE---------------- 132
++F+ K + CWN M+ A HG E +LF
Sbjct: 179 RGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGY 238
Query: 133 ------------MEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFD--HMVKR--YK 176
+E PD T + +L C++ GL+D R H+ +R
Sbjct: 239 AAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWIS 298
Query: 177 IVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISF 236
IV + +V + ++ G L A + T V W +++G E + F
Sbjct: 299 IVVGN----ALVSMYAKCGDLHTAVEGFNTMK-DTDVWTWNSVIGGLAFHGQAEQSVRFF 353
Query: 237 KQL 239
K++
Sbjct: 354 KKM 356
Score = 50.4 bits (119), Expect = 6e-05
Identities = 31/125 (24%), Positives = 58/125 (45%), Gaps = 6/125 (4%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
M + + +WNS+I G ++ F +M + P E++ + +LGAC+ G +E G
Sbjct: 325 MKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISFLCVLGACSHAGLVEDG 384
Query: 61 HKIYESLK---VCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMK-TVSCWNAMVIG 116
K + +K E Y + +V+M + G L A+ I + M+ + + W ++
Sbjct: 385 QKFFYLMKDRYGIEPNARHY--SCIVDMLGRAGLLDEAYAIVSNMRCEPSAVVWRTLLGA 442
Query: 117 LAVHG 121
HG
Sbjct: 443 CRTHG 447
Score = 41.6 bits (96), Expect = 0.028
Identities = 41/181 (22%), Positives = 79/181 (42%), Gaps = 9/181 (4%)
Query: 90 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 149
G + A ++F+G+ + NAMV G A G + F ++ M E+ +RPD TF
Sbjct: 47 GRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEA--SRLRPDAFTFC 104
Query: 150 GVLVACSHKGLV-DKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAP 208
+L AC+ GL +A V + + D+ ++++ ++ G L A +++
Sbjct: 105 YLLRACA--GLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVA-SVLLDEA 161
Query: 209 FQNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVER 268
+ VV W ++ + + A F + K ++ + +L YA+ G +
Sbjct: 162 GEGDVVAWSAVIAGHAARGDMAAARKMFDECTH-KDIVCWNVML--GAYAKHGEMENARE 218
Query: 269 L 269
L
Sbjct: 219 L 219
>ref|NP_910353.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa (japonica cultivar-group)]
gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 510
Score = 234 bits (597), Expect = 2e-60
Identities = 121/294 (41%), Positives = 182/294 (61%), Gaps = 11/294 (3%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEM-QNAGVKPTEVTLISILGACAETGALEI 59
MP+RN VSW +M++G + A+E F EM + AGV+P E+T+ S+L ACA GA+E+
Sbjct: 179 MPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMEL 238
Query: 60 GHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSC-WNAMVIGLA 118
G K+ E + Y+ NAL+ MY KCG++ AW++F G+ + C WN+M++ A
Sbjct: 239 GRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFA 298
Query: 119 VHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIV 178
VHG E LF ++ + ++PD +TF+GV++AC+H GLV++ + +FD M + +
Sbjct: 299 VHGLWREALALFYKLRMA---GVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLK 355
Query: 179 PDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQ 238
P +HYGCMVDLL R GLL E+Y +I + P + V+W LLGAC N ELAE++ +
Sbjct: 356 PRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDK 415
Query: 239 LAKLKQLIDGDYVLLSNIYAEAGRWD---EVERLRSEMDYLHVPRQAGYSQINM 289
L L+ + V+LSNIYA +G+WD +V +L E D+ + AGYS I +
Sbjct: 416 LIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDH---KKSAGYSFIEL 466
Score = 62.0 bits (149), Expect = 2e-08
Identities = 44/171 (25%), Positives = 85/171 (48%), Gaps = 7/171 (4%)
Query: 52 AETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWN 111
A++ L K+++ L C ++ + NAL++ Y K G + A ++F M + V W
Sbjct: 133 AKSKLLVEARKVFDEL-TCR---DTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWT 188
Query: 112 AMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHM 171
AMV G A +G EE + F EM E G ++P+ +T VL AC+ G ++ R +
Sbjct: 189 AMVSGYAQNGRHEEAVETFLEMWERAG--VQPNELTVSSVLPACAAVGAMELGR-KVEEY 245
Query: 172 VKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGA 222
+ ++ + ++++ S+ G + +A+Q+ Q + W +++ A
Sbjct: 246 ARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMA 296
>dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|15228653|ref|NP_189568.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 232 bits (591), Expect = 1e-59
Identities = 120/291 (41%), Positives = 176/291 (60%), Gaps = 3/291 (1%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
+P +N V+W +IAG A L +M +G+K +ISIL AC E+G L +G
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLG 334
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+I+ LK +Y+ NAL++MY KCGNL A+++FN + K + WN M+ GL VH
Sbjct: 335 MRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVH 394
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G+ +E +LF+ M IRPD+VTFI VL +C+H GL+D+ YF M K Y +VP
Sbjct: 395 GHGKEAIELFSRMRRE---GIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQ 451
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLA 240
+HYGC+VDLL R G L+EA +++ T P + +VV+W LLGACR + ++A+ L
Sbjct: 452 VEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLV 511
Query: 241 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMKE 291
KL G+Y LLSNIYA A W+ V +RS+M + V + +G S + +++
Sbjct: 512 KLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELED 562
Score = 74.3 bits (181), Expect = 4e-12
Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 15/222 (6%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
M ER+ VSWNSM+ G V + A LF EM + ++ ++L A +
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL----ISWNTMLDGYARCREMSKA 235
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKM--KTVSCWNAMVIGLA 118
+++E K+ E S+ + +V Y K G++ +A +F+ M + K V W ++ G A
Sbjct: 236 FELFE--KMPERNTVSW--STMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYA 291
Query: 119 VHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIV 178
G +E +L +M + ++ D I +L AC+ GL+ ++KR +
Sbjct: 292 EKGLLKEADRLVDQM---VASGLKFDAAAVISILAACTESGLLSLG-MRIHSILKRSNLG 347
Query: 179 PDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLL 220
++ ++D+ ++ G L++A+ + P + +V W T+L
Sbjct: 348 SNAYVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTML 388
Score = 61.2 bits (147), Expect = 3e-08
Identities = 76/292 (26%), Positives = 126/292 (43%), Gaps = 39/292 (13%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHK 62
E N NS+I A +FSEMQ G+ T +L AC+ L +
Sbjct: 79 EPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKM 138
Query: 63 IYESLKVCEHKIESYLGNALVNMYCKCGNLSL--AWEIFNGMKMKTVSCWNAMVIGLAVH 120
++ ++ + Y+ NAL++ Y +CG L + A ++F M + WN+M+ GL
Sbjct: 139 MHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKA 198
Query: 121 GYCEEVFQLFTEMEE--------SLGGSIR--------------PDR--VTFIGVLVACS 156
G + +LF EM + L G R P+R V++ +++ S
Sbjct: 199 GELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYS 258
Query: 157 HKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQII--MTA---PFQN 211
G ++ AR FD M K V + ++ + GLL+EA +++ M A F
Sbjct: 259 KAGDMEMARVMFDKMPLPAKNVVT---WTIIIAGYAEKGLLKEADRLVDQMVASGLKFDA 315
Query: 212 SVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVL--LSNIYAEAG 261
+ V+ ++L AC T+S + + K L YVL L ++YA+ G
Sbjct: 316 AAVI--SILAAC-TESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCG 364
Score = 36.2 bits (82), Expect = 1.2
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 77 YLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEES 136
++ L++ C +LA +FN ++ V N+++ A + + F +F+EM+
Sbjct: 52 HIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRF 111
Query: 137 LGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGL 196
+ D T+ +L ACS + + + +H +++ + D ++D SR G
Sbjct: 112 ---GLFADNFTYPFLLKACSGQSWLPVVKMMHNH-IEKLGLSSDIYVPNALIDCYSRCGG 167
Query: 197 L--EEAYQIIMTAPFQNSVVLWRTLLG 221
L +A ++ + V W ++LG
Sbjct: 168 LGVRDAMKLFEKMS-ERDTVSWNSMLG 193
>ref|NP_912833.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 982
Score = 229 bits (585), Expect = 5e-59
Identities = 120/292 (41%), Positives = 170/292 (58%), Gaps = 9/292 (3%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MP RN VSW +I ++ A+E+F MQ G++P V L+S+L AC + G +++G
Sbjct: 647 MPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLG 706
Query: 61 ---HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGL 117
H+ +C+ E L NA+++MY KCG++ A E+F GM+ K++ W M+ G
Sbjct: 707 EWVHRFVLRRGLCQ---EIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGF 763
Query: 118 AVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKI 177
A+HG E +LF ME+ ++ P+ +TF+ VL CSH GL D RWYF MV +YKI
Sbjct: 764 ALHGLGLEAVELFRRMEKE---NVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKI 820
Query: 178 VPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 237
P +HYGCM+DLL R G L EA +I PF+ + +W LL A RT +TEL E +
Sbjct: 821 KPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALL 880
Query: 238 QLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINM 289
L +L+ G+Y+LLSNIYAE RWD V LR M + G S I++
Sbjct: 881 HLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDV 932
Score = 63.2 bits (152), Expect = 9e-09
Identities = 45/196 (22%), Positives = 88/196 (43%), Gaps = 8/196 (4%)
Query: 25 ALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVN 84
A +L S + AG S++ A G++ ++++ + N +++
Sbjct: 573 AAQLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVS---WNVMID 629
Query: 85 MYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPD 144
Y K G+L+ A E+F+ M + V W ++ A EE ++F M+ I PD
Sbjct: 630 GYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVE---GIEPD 686
Query: 145 RVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQII 204
V + VL AC G+VD W +++R + + ++D+ + G +++A + +
Sbjct: 687 GVALLSVLSACGDLGVVDLGEWVHRFVLRR-GLCQEIPLMNAIIDMYVKCGSVKKALE-V 744
Query: 205 MTAPFQNSVVLWRTLL 220
Q S+V W T++
Sbjct: 745 FEGMEQKSIVTWTTMI 760
>dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa (japonica cultivar-group)]
Length = 503
Score = 229 bits (585), Expect = 5e-59
Identities = 120/292 (41%), Positives = 170/292 (58%), Gaps = 9/292 (3%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MP RN VSW +I ++ A+E+F MQ G++P V L+S+L AC + G +++G
Sbjct: 168 MPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLG 227
Query: 61 ---HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGL 117
H+ +C+ E L NA+++MY KCG++ A E+F GM+ K++ W M+ G
Sbjct: 228 EWVHRFVLRRGLCQ---EIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGF 284
Query: 118 AVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKI 177
A+HG E +LF ME+ ++ P+ +TF+ VL CSH GL D RWYF MV +YKI
Sbjct: 285 ALHGLGLEAVELFRRMEKE---NVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKI 341
Query: 178 VPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 237
P +HYGCM+DLL R G L EA +I PF+ + +W LL A RT +TEL E +
Sbjct: 342 KPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALL 401
Query: 238 QLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINM 289
L +L+ G+Y+LLSNIYAE RWD V LR M + G S I++
Sbjct: 402 HLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDV 453
Score = 63.2 bits (152), Expect = 9e-09
Identities = 45/196 (22%), Positives = 88/196 (43%), Gaps = 8/196 (4%)
Query: 25 ALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVN 84
A +L S + AG S++ A G++ ++++ + N +++
Sbjct: 94 AAQLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVS---WNVMID 150
Query: 85 MYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPD 144
Y K G+L+ A E+F+ M + V W ++ A EE ++F M+ I PD
Sbjct: 151 GYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVE---GIEPD 207
Query: 145 RVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQII 204
V + VL AC G+VD W +++R + + ++D+ + G +++A + +
Sbjct: 208 GVALLSVLSACGDLGVVDLGEWVHRFVLRR-GLCQEIPLMNAIIDMYVKCGSVKKALE-V 265
Query: 205 MTAPFQNSVVLWRTLL 220
Q S+V W T++
Sbjct: 266 FEGMEQKSIVTWTTMI 281
>ref|XP_472363.1| OSJNBb0012E08.2 [Oryza sativa (japonica cultivar-group)]
gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza
sativa (japonica cultivar-group)]
Length = 486
Score = 228 bits (581), Expect = 2e-58
Identities = 115/294 (39%), Positives = 172/294 (58%), Gaps = 4/294 (1%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MPER+AVSW +++AGC A+ LF M+ G +P +V L ++L CA+ GAL+ G
Sbjct: 190 MPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKG 249
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+++E ++ + YL +V++Y KCG + +A E+F+ K V WNA+++GLA+H
Sbjct: 250 QEVHEYVRRTRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMH 309
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G+ F M L RPD TF+GVL+ CSH GLVD AR F M + + +
Sbjct: 310 GHGTVALDYFDRM---LVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRE 366
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQ-SNTELAEISFKQL 239
KHYGCM DLL R GL++EA ++I + P + +W +L CR +N E AE++ ++L
Sbjct: 367 LKHYGCMADLLGRAGLIDEAMEMISSMPMEADTYVWGGILAGCRMHGNNVEFAEVAARRL 426
Query: 240 AKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMKESD 293
+L G Y ++ IYA+AGRW++V R+R MD + R G S I M+ D
Sbjct: 427 LELNPDDGGVYSAMAGIYADAGRWEDVARVRRSMDEMVGMRNVGRSSIAMELKD 480
Score = 72.8 bits (177), Expect = 1e-11
Identities = 62/204 (30%), Positives = 92/204 (44%), Gaps = 7/204 (3%)
Query: 80 NALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGG 139
NALV+ Y K G L LA +F GM + W +V G A G E+ +LF M
Sbjct: 168 NALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRRE--- 224
Query: 140 SIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEE 199
RPD V VL C+ G +DK + ++ V+R + P+ +VDL ++ G +E
Sbjct: 225 GYRPDDVALAAVLSCCAQLGALDKGQEVHEY-VRRTRPRPNVYLCTGIVDLYAKCGRVEV 283
Query: 200 AYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNI-YA 258
A ++ P +N V W L+ + +A F ++ DG L I +
Sbjct: 284 AREVFDACPEKN-VFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVLIGCS 342
Query: 259 EAGRWDEVERLRSEMDYLH-VPRQ 281
AG D R+ EM + H VPR+
Sbjct: 343 HAGLVDTARRIFYEMQHNHGVPRE 366
>ref|XP_477609.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa (japonica cultivar-group)]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 673
Score = 228 bits (581), Expect = 2e-58
Identities = 121/290 (41%), Positives = 174/290 (59%), Gaps = 5/290 (1%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAG--VKPTEVTLISILGACAETGALEIG 60
ER+ VSWNSMIA A A+ L+S+M N G +K V L ++L ACA GA++ G
Sbjct: 261 ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTG 320
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+I+ + + Y+G ++V+MY KCG + +A F +K K + W+AM+ G +H
Sbjct: 321 KRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 380
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G +E ++FTEM+ S +RP+ +TFI VL ACSH GL+D+ R++++ M + + I
Sbjct: 381 GRGQEALEIFTEMKRS---GLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAG 437
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLA 240
+HYGCMVDLL R G L+EAY +I + +W LL ACR N ELAE+S K+L
Sbjct: 438 VEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLF 497
Query: 241 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMK 290
+L G YVLLSNIYAEA W +VER+R + + + GYS +K
Sbjct: 498 ELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELK 547
>dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
Length = 573
Score = 228 bits (581), Expect = 2e-58
Identities = 120/296 (40%), Positives = 181/296 (60%), Gaps = 8/296 (2%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQ-----NAGVKPTEVTLISILGACAETG 55
MPERN +SW+ +I G V Y AL+LF EMQ A V+P E T+ ++L AC G
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 56 ALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGM-KMKTVSCWNAMV 114
ALE G ++ + +I+ LG AL++MY KCG+L A +FN + K V ++AM+
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Query: 115 IGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKR 174
LA++G +E FQLF+EM S +I P+ VTF+G+L AC H+GL+++ + YF M++
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTS--DNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEE 331
Query: 175 YKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEI 234
+ I P +HYGCMVDL R GL++EA I + P + V++W +LL R + + E
Sbjct: 332 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEG 391
Query: 235 SFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMK 290
+ K+L +L + G YVLLSN+YA+ GRW EV+ +R EM+ + + G S + ++
Sbjct: 392 ALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVE 447
Score = 60.5 bits (145), Expect = 6e-08
Identities = 34/126 (26%), Positives = 65/126 (50%), Gaps = 3/126 (2%)
Query: 80 NALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEME--ESL 137
N++VN Y K G + A ++F+ M + V W+ ++ G + G +E LF EM+ +
Sbjct: 132 NSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 191
Query: 138 GGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLL 197
+RP+ T VL AC G +++ +W + + +Y + D ++D+ ++ G L
Sbjct: 192 EAFVRPNEFTMSTVLSACGRLGALEQGKWVHAY-IDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 198 EEAYQI 203
E A ++
Sbjct: 251 ERAKRV 256
>dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa (japonica cultivar-group)]
Length = 602
Score = 228 bits (581), Expect = 2e-58
Identities = 119/289 (41%), Positives = 172/289 (59%), Gaps = 3/289 (1%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MP RN VSWNSMI+G V + ALE+F EM+ GV+ S L AC GAL G
Sbjct: 190 MPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRG 249
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+IY ++ ++++ L A+V+MYCKCG + AW +F+ + + ++ WN M+ G AVH
Sbjct: 250 REIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVH 309
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G C++ +LF +ME + + PD VT + VL AC+H G V + R Y +H+V R+ I P
Sbjct: 310 GRCDDALELFHQMEAA---GVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPK 366
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLA 240
+HYGCMVDL R G L+EA ++I P + + LLGAC+ + +L E ++
Sbjct: 367 GEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVI 426
Query: 241 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINM 289
L G YVLL+N+ A AGRWDEV ++R MD +V ++AG S I +
Sbjct: 427 DLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEV 475
Score = 52.4 bits (124), Expect = 2e-05
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 7/195 (3%)
Query: 82 LVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSI 141
+V C+ G + A E+F+ M + + WN+M+ G + ++F EM +LG +
Sbjct: 170 MVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEM-RALG--V 226
Query: 142 RPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAY 201
+ LVAC+ G + + R + V++ I D+K +VD+ + G ++EA+
Sbjct: 227 EGNGFVATSALVACTGAGALGRGREIY-RWVEQSGIEVDAKLATAVVDMYCKCGCVDEAW 285
Query: 202 QIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAG 261
+ + P + W ++G + A F Q+ + D V L N+
Sbjct: 286 GVFDSLP-ARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAG--VAPDDVTLLNVLTACA 342
Query: 262 RWDEVERLRSEMDYL 276
EV R ++++
Sbjct: 343 HAGEVSEGRRYLNHI 357
>emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|15235498|ref|NP_192184.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
gi|4263522|gb|AAD15348.1| hypothetical protein
[Arabidopsis thaliana] gi|25345450|pir||A85035
hypothetical protein AT4g02750 [imported] - Arabidopsis
thaliana
Length = 781
Score = 228 bits (580), Expect = 2e-58
Identities = 119/290 (41%), Positives = 172/290 (59%), Gaps = 3/290 (1%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MP+R+ VSW +MIAG AL LF +M+ G + + S L CA+ ALE+G
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELG 428
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+++ L ++ ++GNAL+ MYCKCG++ A ++F M K + WN M+ G + H
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G+ E + F M+ ++PD T + VL ACSH GLVDK R YF M + Y ++P+
Sbjct: 489 GFGEVALRFFESMKRE---GLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPN 545
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLA 240
S+HY CMVDLL R GLLE+A+ ++ PF+ +W TLLGA R NTELAE + ++
Sbjct: 546 SQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 605
Query: 241 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMK 290
++ G YVLLSN+YA +GRW +V +LR M V + GYS I ++
Sbjct: 606 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655
Score = 64.3 bits (155), Expect = 4e-09
Identities = 53/245 (21%), Positives = 107/245 (43%), Gaps = 23/245 (9%)
Query: 2 PERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGH 61
P ++ +W +M++G + R A ELF +M EV+ ++L + +E+
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERN----EVSWNAMLAGYVQGERMEMAK 332
Query: 62 KIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHG 121
++++ + + ++ N ++ Y +CG +S A +F+ M + W AM+ G + G
Sbjct: 333 ELFDVMPC--RNVSTW--NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG 388
Query: 122 YCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDS 181
+ E +LF +ME G R +R +F L C+ ++ + +VK
Sbjct: 389 HSFEALRLFVQMEREGG---RLNRSSFSSALSTCADVVALELGKQLHGRLVK------GG 439
Query: 182 KHYGCMVD-----LLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISF 236
GC V + + G +EEA + ++ +V W T++ E+A F
Sbjct: 440 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD-IVSWNTMIAGYSRHGFGEVALRFF 498
Query: 237 KQLAK 241
+ + +
Sbjct: 499 ESMKR 503
Score = 63.9 bits (154), Expect = 5e-09
Identities = 69/278 (24%), Positives = 119/278 (41%), Gaps = 34/278 (12%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MPER+ VSWN MI G V R+ A ELF M V + ++L A+ G ++
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTMLSGYAQNGCVDDA 176
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+++ ++ E S+ NAL++ Y + + A +F + + WN ++ G
Sbjct: 177 RSVFD--RMPEKNDVSW--NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK 232
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
E Q F M ++R D V++ ++ + G +D+AR FD V D
Sbjct: 233 KKIVEARQFFDSM------NVR-DVVSWNTIITGYAQSGKIDEARQLFDE-----SPVQD 280
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISF---- 236
+ MV + ++EEA ++ P +N V W +L E+A+ F
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNE-VSWNAMLAGYVQGERMEMAKELFDVMP 339
Query: 237 -KQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEM 273
+ ++ +I G YA+ G+ E + L +M
Sbjct: 340 CRNVSTWNTMITG--------YAQCGKISEAKNLFDKM 369
Score = 45.8 bits (107), Expect = 0.001
Identities = 56/261 (21%), Positives = 101/261 (38%), Gaps = 38/261 (14%)
Query: 9 WNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLK 68
WN I+ + AL +F M + + V+ ++ G E+ K+++ +
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMP----RWSSVSYNGMISGYLRNGEFELARKLFDEMP 122
Query: 69 VCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQ 128
E + S+ N ++ Y + NL A E+F M + V WN M+ G A +G ++
Sbjct: 123 --ERDLVSW--NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARS 178
Query: 129 LFTEMEESLGGS-------------------IRPDRVTFIGVLVACSHKGLVDK-----A 164
+F M E S + R + V C G V K A
Sbjct: 179 VFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEA 238
Query: 165 RWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACR 224
R +FD M R D + ++ ++ G ++EA Q+ +P Q+ V W ++
Sbjct: 239 RQFFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLFDESPVQD-VFTWTAMVSGYI 292
Query: 225 TQSNTELAEISFKQLAKLKQL 245
E A F ++ + ++
Sbjct: 293 QNRMVEEARELFDKMPERNEV 313
>gb|AAF79838.1| T6D22.15 [Arabidopsis thaliana] gi|15223099|ref|NP_172286.1|
pentatricopeptide (PPR) repeat-containing protein
[Arabidopsis thaliana]
Length = 741
Score = 227 bits (578), Expect = 4e-58
Identities = 117/291 (40%), Positives = 176/291 (60%), Gaps = 5/291 (1%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
+P ++ +SWN++I G + Y AL LF EM +G P +VT++SIL ACA GA++IG
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386
Query: 61 H--KIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLA 118
+Y ++ S L +L++MY KCG++ A ++FN + K++S WNAM+ G A
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446
Query: 119 VHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIV 178
+HG + F LF+ M + I+PD +TF+G+L ACSH G++D R F M + YK+
Sbjct: 447 MHGRADASFDLFSRMRKI---GIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 179 PDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQ 238
P +HYGCM+DLL GL +EA ++I + V+W +LL AC+ N EL E +
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
Query: 239 LAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINM 289
L K++ G YVLLSNIYA AGRW+EV + R+ ++ + + G S I +
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEI 614
Score = 132 bits (331), Expect = 2e-29
Identities = 86/290 (29%), Positives = 148/290 (50%), Gaps = 12/290 (4%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
+P ++ VSWN+MI+G +Y ALELF +M V+P E T+++++ ACA++G++E+G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 61 HKIYESLKVCEHKIESYLG--NALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLA 118
+++ L + +H S L NAL+++Y KCG L A +F + K V WN ++ G
Sbjct: 286 RQVH--LWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343
Query: 119 VHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIV 178
+E LF EM L P+ VT + +L AC+H G +D RW ++ KR K V
Sbjct: 344 HMNLYKEALLLFQEM---LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGV 400
Query: 179 PD-SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFK 237
+ S ++D+ ++ G +E A+Q + + S+ W ++ + + F
Sbjct: 401 TNASSLRTSLIDMYAKCGDIEAAHQ-VFNSILHKSLSSWNAMIFGFAMHGRADASFDLFS 459
Query: 238 QLAKLK-QLIDGDYVLLSNIYAEAGRWDEVERLRSEM--DYLHVPRQAGY 284
++ K+ Q D +V L + + +G D + M DY P+ Y
Sbjct: 460 RMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHY 509
Score = 95.1 bits (235), Expect = 2e-18
Identities = 81/307 (26%), Positives = 138/307 (44%), Gaps = 54/307 (17%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHK 62
E N + WN+M G D AL+L+ M + G+ P T +L +CA++ A + G +
Sbjct: 96 EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 155
Query: 63 IYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIF----------------------- 99
I+ + ++ Y+ +L++MY + G L A ++F
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215
Query: 100 --NGMKM------KTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGV 151
N K+ K V WNAM+ G A G +E +LF +M ++ ++RPD T + V
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT---NVRPDESTMVTV 272
Query: 152 LVACSHKGLVDKAR----WYFDH-MVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMT 206
+ AC+ G ++ R W DH KIV ++DL S+ G LE A +
Sbjct: 273 VSACAQSGSIELGRQVHLWIDDHGFGSNLKIV------NALIDLYSKCGELETACGLFER 326
Query: 207 APFQNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYA-------E 259
P+++ V+ W TL+G + + A + F+++ + + D +LS + A +
Sbjct: 327 LPYKD-VISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLGAID 384
Query: 260 AGRWDEV 266
GRW V
Sbjct: 385 IGRWIHV 391
>emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
gi|5262797|emb|CAB45902.1| putative protein (fragment)
[Arabidopsis thaliana] gi|7486979|pir||T10649
hypothetical protein T13K14.230 - Arabidopsis thaliana
(fragment) gi|25407578|pir||A85240 hypothetical protein
AT4g21070 [imported] - Arabidopsis thaliana
Length = 1495
Score = 226 bits (577), Expect = 5e-58
Identities = 114/289 (39%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MPE++ V+WNS+I G AL L++EM + G+KP T++S+L ACA+ GAL +G
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+++ + + N L+++Y +CG + A +F+ M K W ++++GLAV+
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G+ +E +LF ME + G + P +TF+G+L ACSH G+V + YF M + YKI P
Sbjct: 302 GFGKEAIELFKYMESTEG--LLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPR 359
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLA 240
+H+GCMVDLL+R G +++AY+ I + P Q +VV+WRTLLGAC +++LAE + Q+
Sbjct: 360 IEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQIL 419
Query: 241 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINM 289
+L+ GDYVLLSN+YA RW +V+++R +M V + G+S + +
Sbjct: 420 QLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
Score = 94.4 bits (233), Expect = 4e-18
Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 6/255 (2%)
Query: 5 NAVSWNSMIAGCVSVRDYAGALELFSEMQNAG-VKPTEVTLISILGACAETGALEIGHKI 63
N WN++I G + + A L+ EM+ +G V+P T ++ A + +G I
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 64 YESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYC 123
+ + Y+ N+L+++Y CG+++ A+++F+ M K + WN+++ G A +G
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203
Query: 124 EEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKH 183
EE L+TEM I+PD T + +L AC+ G + + +M+K + +
Sbjct: 204 EEALALYTEMNSK---GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK-VGLTRNLHS 259
Query: 184 YGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLAKLK 243
++DL +R G +EEA + +NSV ++G E E+ FK + +
Sbjct: 260 SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL-FKYMESTE 318
Query: 244 QLIDGDYVLLSNIYA 258
L+ + + +YA
Sbjct: 319 GLLPCEITFVGILYA 333
>gb|AAF79892.1| Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off
gi|25345465|pir||A86336 T20H2.1 protein (truncated) -
Arabidopsis thaliana
Length = 757
Score = 226 bits (576), Expect = 6e-58
Identities = 122/289 (42%), Positives = 175/289 (60%), Gaps = 5/289 (1%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHK 62
E N VSW S+IAGC ALELF EMQ AGVKP VT+ S+L AC AL G
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRS 409
Query: 63 IYESLKVCEHKIES-YLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHG 121
+ V H +++ ++G+AL++MY KCG ++L+ +FN M K + CWN+++ G ++HG
Sbjct: 410 TH-GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHG 468
Query: 122 YCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDS 181
+EV +F E + ++PD ++F +L AC GL D+ YF M + Y I P
Sbjct: 469 KAKEVMSIF---ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRL 525
Query: 182 KHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLAK 241
+HY CMV+LL R G L+EAY +I PF+ +W LL +CR Q+N +LAEI+ ++L
Sbjct: 526 EHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFH 585
Query: 242 LKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMK 290
L+ G YVLLSNIYA G W EV+ +R++M+ L + + G S I +K
Sbjct: 586 LEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634
Score = 67.8 bits (164), Expect = 4e-10
Identities = 41/159 (25%), Positives = 83/159 (51%), Gaps = 3/159 (1%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
+P+ S++S+I + + ++ +FS M + G+ P L ++ CAE A ++G
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG 135
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+I+ V +++++ ++ +MY +CG + A ++F+ M K V +A++ A
Sbjct: 136 KQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARK 195
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKG 159
G EEV ++ +EME S I + V++ G+L + G
Sbjct: 196 GCLEEVVRILSEMESS---GIEANIVSWNGILSGFNRSG 231
Score = 67.4 bits (163), Expect = 5e-10
Identities = 59/293 (20%), Positives = 127/293 (43%), Gaps = 38/293 (12%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHK 62
E N VSWN +++G + A+ +F ++ + G P +VT+ S+L + ++ L +G
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273
Query: 63 IYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGY 122
I+ + + + +A+++MY K G++ +FN +M NA + GL+ +G
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 123 CE---EVFQLFTEMEESLG-----------------------------GSIRPDRVTFIG 150
+ E+F+LF E L ++P+ VT
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393
Query: 151 VLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYG-CMVDLLSRWGLLEEAYQIIMTAPF 209
+L AC + + R V+ + + D+ H G ++D+ ++ G + + + P
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLL--DNVHVGSALIDMYAKCGRINLSQIVFNMMPT 451
Query: 210 QNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGR 262
+N +V W +L+ + F+ L + + + D++ +++ + G+
Sbjct: 452 KN-LVCWNSLMNGFSMHGKAKEVMSIFESLMRTR--LKPDFISFTSLLSACGQ 501
Score = 53.9 bits (128), Expect = 5e-06
Identities = 30/118 (25%), Positives = 58/118 (48%), Gaps = 6/118 (5%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MP +N V WNS++ G + +F + +KP ++ S+L AC + G + G
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 61 HKIYESLKV---CEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSC-WNAMV 114
K ++ + + ++E Y + +VN+ + G L A+++ M + SC W A++
Sbjct: 509 WKYFKMMSEEYGIKPRLEHY--SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALL 564
>ref|NP_173449.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 760
Score = 226 bits (576), Expect = 6e-58
Identities = 122/289 (42%), Positives = 175/289 (60%), Gaps = 5/289 (1%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHK 62
E N VSW S+IAGC ALELF EMQ AGVKP VT+ S+L AC AL G
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRS 409
Query: 63 IYESLKVCEHKIES-YLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHG 121
+ V H +++ ++G+AL++MY KCG ++L+ +FN M K + CWN+++ G ++HG
Sbjct: 410 TH-GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHG 468
Query: 122 YCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDS 181
+EV +F E + ++PD ++F +L AC GL D+ YF M + Y I P
Sbjct: 469 KAKEVMSIF---ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRL 525
Query: 182 KHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLAK 241
+HY CMV+LL R G L+EAY +I PF+ +W LL +CR Q+N +LAEI+ ++L
Sbjct: 526 EHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFH 585
Query: 242 LKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINMK 290
L+ G YVLLSNIYA G W EV+ +R++M+ L + + G S I +K
Sbjct: 586 LEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634
Score = 67.8 bits (164), Expect = 4e-10
Identities = 41/159 (25%), Positives = 83/159 (51%), Gaps = 3/159 (1%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
+P+ S++S+I + + ++ +FS M + G+ P L ++ CAE A ++G
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG 135
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
+I+ V +++++ ++ +MY +CG + A ++F+ M K V +A++ A
Sbjct: 136 KQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARK 195
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKG 159
G EEV ++ +EME S I + V++ G+L + G
Sbjct: 196 GCLEEVVRILSEMESS---GIEANIVSWNGILSGFNRSG 231
Score = 67.4 bits (163), Expect = 5e-10
Identities = 59/293 (20%), Positives = 127/293 (43%), Gaps = 38/293 (12%)
Query: 3 ERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHK 62
E N VSWN +++G + A+ +F ++ + G P +VT+ S+L + ++ L +G
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRL 273
Query: 63 IYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGY 122
I+ + + + +A+++MY K G++ +FN +M NA + GL+ +G
Sbjct: 274 IHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 123 CE---EVFQLFTEMEESLG-----------------------------GSIRPDRVTFIG 150
+ E+F+LF E L ++P+ VT
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393
Query: 151 VLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYG-CMVDLLSRWGLLEEAYQIIMTAPF 209
+L AC + + R V+ + + D+ H G ++D+ ++ G + + + P
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVHLL--DNVHVGSALIDMYAKCGRINLSQIVFNMMPT 451
Query: 210 QNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGR 262
+N +V W +L+ + F+ L + + + D++ +++ + G+
Sbjct: 452 KN-LVCWNSLMNGFSMHGKAKEVMSIFESLMRTR--LKPDFISFTSLLSACGQ 501
Score = 53.9 bits (128), Expect = 5e-06
Identities = 30/118 (25%), Positives = 58/118 (48%), Gaps = 6/118 (5%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MP +N V WNS++ G + +F + +KP ++ S+L AC + G + G
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 61 HKIYESLKV---CEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSC-WNAMV 114
K ++ + + ++E Y + +VN+ + G L A+++ M + SC W A++
Sbjct: 509 WKYFKMMSEEYGIKPRLEHY--SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALL 564
>ref|XP_483554.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa (japonica cultivar-group)]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 581
Score = 226 bits (575), Expect = 8e-58
Identities = 117/289 (40%), Positives = 173/289 (59%), Gaps = 2/289 (0%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MPERN V W SMIAGC + A++LF +MQ AGVK + T+ +++ +C + GAL++G
Sbjct: 257 MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLG 316
Query: 61 HKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVH 120
++ E + N+L++MY KCG+++ A++IF+G+ + V W M++G A++
Sbjct: 317 RYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMN 376
Query: 121 GYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPD 180
G C E LF +ME + P+ V F+GVL ACSH GLV++ +F M K Y +VP
Sbjct: 377 GLCVEALDLFAQMEGE--DKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPR 434
Query: 181 SKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLA 240
+HYGCMVDLL R LL EA Q I P VV+WR+LL ACR LAE + +++
Sbjct: 435 IEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIE 494
Query: 241 KLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINM 289
+L+ G +VLLSN+YA RW +V +R+ M ++ G S I +
Sbjct: 495 QLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEV 543
Score = 110 bits (276), Expect = 4e-23
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 4/199 (2%)
Query: 5 NAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIGHKIY 64
+ VSWN++IAG + AL+ F +M V+ EVTL+++L ACA TGA+++G +
Sbjct: 160 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCH 219
Query: 65 ESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCE 124
+ + +I Y+G++LV+MY KCG + A +FN M + V CW +M+ G G +
Sbjct: 220 ALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFK 279
Query: 125 EVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHY 184
E LF +M+ + ++ D T V+ +C G +D R Y + + +
Sbjct: 280 EAVDLFRDMQIA---GVKADDATIATVVSSCGQMGALDLGR-YLHAYCDGHGLGKELSVK 335
Query: 185 GCMVDLLSRWGLLEEAYQI 203
++D+ S+ G + +AYQI
Sbjct: 336 NSLIDMYSKCGDVNKAYQI 354
Score = 60.1 bits (144), Expect = 8e-08
Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 27/239 (11%)
Query: 48 LGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMK--MK 105
+ A A +L++G + + +S++ NAL+NMY C + A + +
Sbjct: 100 ISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWAS 159
Query: 106 TVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKAR 165
V WN ++ G G + Q F +M + +R D VT + VLVAC+ G +
Sbjct: 160 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKE---QVRLDEVTLLNVLVACARTGAMKVG- 215
Query: 166 WYFDHMVKRYKIVPDSKHYGC-----MVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLL 220
+ +V + C +V + ++ G++EEA ++ P +N VV W +++
Sbjct: 216 -----SLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERN-VVCWTSMI 269
Query: 221 GACRTQSNTELAEISFK--QLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLH 277
C + A F+ Q+A +K D ++ + + G+ ++ R YLH
Sbjct: 270 AGCTQSGRFKEAVDLFRDMQIAGVK----ADDATIATVVSSCGQMGALDLGR----YLH 320
>gb|AAD39314.1| Hypothetical protein [Arabidopsis thaliana] gi|25346319|pir||H96620
hypothetical protein F23H11.3 [imported] - Arabidopsis
thaliana
Length = 615
Score = 225 bits (573), Expect = 1e-57
Identities = 120/300 (40%), Positives = 184/300 (61%), Gaps = 13/300 (4%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MPER+ VSWNSMI V +Y AL+LF EMQ + +P T+ S+L ACA G+L +G
Sbjct: 189 MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 247
Query: 61 HKIYESL-KVCEHKI--ESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGL 117
+ L + C+ + + + N+L+ MYCKCG+L +A ++F GM+ + ++ WNAM++G
Sbjct: 248 TWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 307
Query: 118 AVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKI 177
A HG EE F M + ++RP+ VTF+G+L+AC+H+G V+K R YFD MV+ Y I
Sbjct: 308 ATHGRAEEAMNFFDRMVDKRE-NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCI 366
Query: 178 VPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGA-CRTQSNTELAEISF 236
P +HYGC+VDL++R G + EA ++M+ P + V+WR+LL A C+ ++ EL+E
Sbjct: 367 EPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIA 426
Query: 237 KQLAKLKQ-------LIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINM 289
+ + K+ G YVLLS +YA A RW++V +R M + ++ G S I +
Sbjct: 427 RNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEI 486
Score = 75.9 bits (185), Expect = 1e-12
Identities = 58/242 (23%), Positives = 106/242 (42%), Gaps = 13/242 (5%)
Query: 9 WNSMIAGCV-SVRDYAGALELFSEMQNAGVK-PTEVTLISILGACAETGALEIGHKIYES 66
WN++I C V A L+ +M G P + T +L ACA G +++
Sbjct: 94 WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH-- 151
Query: 67 LKVCEHKI--ESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCE 124
++ +H + Y+ N L+++Y CG L LA ++F+ M +++ WN+M+ L G +
Sbjct: 152 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 211
Query: 125 EVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKR--YKIVPDSK 182
QLF EM+ S PD T VL AC+ G + W ++++ + D
Sbjct: 212 SALQLFREMQR----SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 267
Query: 183 HYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLAKL 242
++++ + G L A Q+ + + W ++ T E A F ++
Sbjct: 268 VKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAMNFFDRMVDK 326
Query: 243 KQ 244
++
Sbjct: 327 RE 328
>gb|AAF79766.1| T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 225 bits (573), Expect = 1e-57
Identities = 120/300 (40%), Positives = 184/300 (61%), Gaps = 13/300 (4%)
Query: 1 MPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLISILGACAETGALEIG 60
MPER+ VSWNSMI V +Y AL+LF EMQ + +P T+ S+L ACA G+L +G
Sbjct: 269 MPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 327
Query: 61 HKIYESL-KVCEHKI--ESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGL 117
+ L + C+ + + + N+L+ MYCKCG+L +A ++F GM+ + ++ WNAM++G
Sbjct: 328 TWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 387
Query: 118 AVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKRYKI 177
A HG EE F M + ++RP+ VTF+G+L+AC+H+G V+K R YFD MV+ Y I
Sbjct: 388 ATHGRAEEAMNFFDRMVDKRE-NVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCI 446
Query: 178 VPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGA-CRTQSNTELAEISF 236
P +HYGC+VDL++R G + EA ++M+ P + V+WR+LL A C+ ++ EL+E
Sbjct: 447 EPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIA 506
Query: 237 KQLAKLKQ-------LIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQAGYSQINM 289
+ + K+ G YVLLS +YA A RW++V +R M + ++ G S I +
Sbjct: 507 RNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEI 566
Score = 75.9 bits (185), Expect = 1e-12
Identities = 58/242 (23%), Positives = 106/242 (42%), Gaps = 13/242 (5%)
Query: 9 WNSMIAGCV-SVRDYAGALELFSEMQNAGVK-PTEVTLISILGACAETGALEIGHKIYES 66
WN++I C V A L+ +M G P + T +L ACA G +++
Sbjct: 174 WNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH-- 231
Query: 67 LKVCEHKI--ESYLGNALVNMYCKCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCE 124
++ +H + Y+ N L+++Y CG L LA ++F+ M +++ WN+M+ L G +
Sbjct: 232 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 291
Query: 125 EVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARWYFDHMVKR--YKIVPDSK 182
QLF EM+ S PD T VL AC+ G + W ++++ + D
Sbjct: 292 SALQLFREMQR----SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVL 347
Query: 183 HYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQSNTELAEISFKQLAKL 242
++++ + G L A Q+ + + W ++ T E A F ++
Sbjct: 348 VKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAMNFFDRMVDK 406
Query: 243 KQ 244
++
Sbjct: 407 RE 408
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,329,220
Number of Sequences: 2540612
Number of extensions: 19483003
Number of successful extensions: 49517
Number of sequences better than 10.0: 1102
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 40297
Number of HSP's gapped (non-prelim): 4328
length of query: 296
length of database: 863,360,394
effective HSP length: 127
effective length of query: 169
effective length of database: 540,702,670
effective search space: 91378751230
effective search space used: 91378751230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)
Medicago: description of AC144765.20