BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144765.10 - phase: 0
(552 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_472504.1| OSJNBb0049I21.5 [Oryza sativa (japonica cultiva... 656 0.0
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 656 0.0
gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum] 654 0.0
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 653 0.0
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 652 0.0
gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica ... 652 0.0
ref|XP_472505.1| OSJNBb0049I21.6 [Oryza sativa (japonica cultiva... 648 0.0
gb|AAT81698.1| putative retrotransposon protein, 5'-partial [Ory... 646 0.0
gb|AAT81665.1| putative retrotransposon protein [Oryza sativa (j... 646 0.0
emb|CAE05392.1| OSJNBa0022F16.16 [Oryza sativa (japonica cultiva... 645 0.0
emb|CAD40358.2| OSJNBa0093P23.4 [Oryza sativa (japonica cultivar... 645 0.0
gb|AAD22153.1| polyprotein [Sorghum bicolor] 644 0.0
ref|XP_471222.1| OSJNBb0016B03.11 [Oryza sativa (japonica cultiv... 644 0.0
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 643 0.0
gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cul... 643 0.0
gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-... 642 0.0
ref|XP_471161.1| OSJNBb0080H08.12 [Oryza sativa (japonica cultiv... 642 0.0
gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cul... 642 0.0
gb|AAP53126.1| putative retroelement [Oryza sativa (japonica cul... 642 0.0
ref|XP_469373.1| putative polyprotein [Oryza sativa (japonica cu... 642 0.0
>ref|XP_472504.1| OSJNBb0049I21.5 [Oryza sativa (japonica cultivar-group)]
gi|38346969|emb|CAE02265.2| OSJNBb0049I21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1644
Score = 656 bits (1692), Expect = 0.0
Identities = 320/541 (59%), Positives = 408/541 (75%), Gaps = 12/541 (2%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVC 60
++ M+V +P G + C+ P+ + F +L+ L +DVI GM+WL NR
Sbjct: 495 LRQPMLVHSPG-GEIAVDTACIDVPIRLRDVVFPSNLMVLVPQTLDVILGMDWLTKNRGV 553
Query: 61 INCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNE 120
I+C + V ++ SG + + + ER G + + + +P+V +
Sbjct: 554 IDCRRREVTLTTPWG-SGMRATMDQDPRLTERAG----------GIFTMLPMKGMPIVQQ 602
Query: 121 FHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVR 180
F +VFP+++P +PP+R++EF IDL+PG +S PY M +EL ELKKQ+ +L +K FVR
Sbjct: 603 FPDVFPEDLPGMPPDRDIEFIIDLIPGTAPISKRPYRMPVNELEELKKQIRELQEKGFVR 662
Query: 181 PSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
PS SPWGAPVL VKKKDGSMR+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKID
Sbjct: 663 PSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKID 722
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
LRSGYHQ+K++ D+ KTAF TRYG Y++ VM FG+TNAP FM MN++F +LDKF+V
Sbjct: 723 LRSGYHQLKIRTGDIPKTAFSTRYGLYKFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFMV 782
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAV 360
VFIDDILIYSK EEEHA+HL++VL+ L++ KLYAK SKCEFWL EV+FLGHV S G+AV
Sbjct: 783 VFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAV 842
Query: 361 DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQC 420
DP+KV+AV++W+ PKSVTEIRSFLGLAGYYRRFIEGFS +A P+TQL K K FVW QC
Sbjct: 843 DPTKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFIEGFSMIARPMTQLLKKEKKFVWSEQC 902
Query: 421 ESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEK 480
+ SF +LK++LT+APIL+LP + FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+
Sbjct: 903 QESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEE 962
Query: 481 NSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDY 540
N PTHDLELAAVV LKIWRHYL G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KDY
Sbjct: 963 NYPTHDLELAAVVHALKIWRHYLIGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDY 1022
Query: 541 D 541
D
Sbjct: 1023 D 1023
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 656 bits (1692), Expect = 0.0
Identities = 326/541 (60%), Positives = 407/541 (74%), Gaps = 12/541 (2%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVC 60
++ M+V +P G +T S C+ P+ + F +L+ L +DVI GM+WL +R
Sbjct: 405 LRKPMIVHSPG-GEITVSHACIDVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGV 463
Query: 61 INCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNE 120
I+C + V ++ S + + + ER G + L L+ +PVV
Sbjct: 464 IDCRRREVTLTTPWG-SDMRATMDQDPRLTERAG----GIFTMLPLKG------MPVVQR 512
Query: 121 FHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVR 180
F +VFP+++P +PP+R+VEF IDL+PG +S PY M +EL ELKKQ+ +L K FVR
Sbjct: 513 FPDVFPEDLPGMPPDRDVEFIIDLIPGTAPISKRPYRMPVNELEELKKQIRELQQKGFVR 572
Query: 181 PSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
PS SPWGAPVL KKKDGSMR+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKID
Sbjct: 573 PSSSPWGAPVLFDKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKID 632
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
LRSGYHQ+K++ ED+ KTAF TRYG YE+ VM FG+TNAP FM MN++F +LDKFVV
Sbjct: 633 LRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVV 692
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAV 360
VFIDDILIYSK EEEHA+HL++VLQ L++ KLYAK SKCEFWL EV+FLGHV S G+AV
Sbjct: 693 VFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAV 752
Query: 361 DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQC 420
DP+KV+AV++W+ PKSVTEIRSFLGLAGYYRRFIEGFSK+A P+TQL K K FVW QC
Sbjct: 753 DPAKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFIEGFSKIARPMTQLLKKEKKFVWSEQC 812
Query: 421 ESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEK 480
+ SF +LK++LT+APIL+LP + FV+YCDAS+ GLGGVLMQD KVVAYASRQLR HE+
Sbjct: 813 QESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDEKVVAYASRQLRPHEE 872
Query: 481 NSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDY 540
N PTHDLEL AVV LKIWRHYL G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KDY
Sbjct: 873 NYPTHDLELVAVVHALKIWRHYLIGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDY 932
Query: 541 D 541
D
Sbjct: 933 D 933
>gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1515
Score = 654 bits (1686), Expect = 0.0
Identities = 319/545 (58%), Positives = 399/545 (72%), Gaps = 14/545 (2%)
Query: 7 VETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVCINCFNK 66
V TP S+ V CP+S+ + VDL+ L ++ DVI GM+WL I+C +
Sbjct: 509 VSTPVGESILAERVYRDCPVSINHKSTMVDLIELDMVDFDVILGMDWLHACYASIDCRTR 568
Query: 67 TVHF----------SSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLP 116
V F SS+ +F++ + ++L G + + S +P
Sbjct: 569 VVKFQFPSEPILEWSSSSAVPKGRFISYLKARKLVSKGCIYHLARVNDSSVEIPYFQSVP 628
Query: 117 VVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDK 176
+V EF EVFP+++P +PPERE++F IDL+P + +S+ PY M+ +EL ELK DLL+K
Sbjct: 629 IVREFPEVFPNDLPGIPPEREIDFGIDLIPDTRPISIPPYRMAPAELKELK----DLLEK 684
Query: 177 KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVF 236
F+RPSVSPWGAPVL V+KKDGS+R+CIDYRQLNKVTIKN+YPLPRIDDL DQL GA F
Sbjct: 685 GFIRPSVSPWGAPVLFVRKKDGSLRMCIDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCF 744
Query: 237 SKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLD 296
SKIDLRSGYHQ++V++ D+ KTAFRTRYGHYE+ VM FG+TNAP FM+ MNR+F +LD
Sbjct: 745 SKIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFRPYLD 804
Query: 297 KFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGN 356
FV++FIDDILIYS+ EE+HA HL+ VLQ LK+++LYAK SKCEFWL V+FLGH+ SG+
Sbjct: 805 MFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGD 864
Query: 357 GIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVW 416
GI VD K++AV W P S TEIRSFLGLAGYYRRF+EGFS +A PLT+LT K F W
Sbjct: 865 GIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTGKFQW 924
Query: 417 DAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLR 476
CE SF ELK+RL TAP+L LP+ + VVYCDAS+ GLG VLMQ+GKV+AYASRQL+
Sbjct: 925 SEACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDASRIGLGCVLMQNGKVIAYASRQLK 984
Query: 477 VHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLEL 536
VHEKN PTHDLELA VVF LK+WRHYLYG ++F+DHKSL+Y+ QKELN+RQRRWLEL
Sbjct: 985 VHEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTDHKSLQYVLTQKELNLRQRRWLEL 1044
Query: 537 LKDYD 541
LKDYD
Sbjct: 1045 LKDYD 1049
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 653 bits (1685), Expect = 0.0
Identities = 319/545 (58%), Positives = 398/545 (72%), Gaps = 14/545 (2%)
Query: 7 VETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVCINCFNK 66
V TP S+ V CP+S+ + VDL+ L ++ DVI GM+WL I+C +
Sbjct: 515 VSTPVGESILAERVYRDCPVSINHKSTMVDLIELDMVDFDVILGMDWLHACYASIDCRTR 574
Query: 67 TVHF----------SSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLP 116
V F SS+ +F++ + ++L G + + S +P
Sbjct: 575 VVKFQFPSEPILEWSSSSAVPKGRFISYLKARKLVSKGCIYHLARVNDSSVEIPYFQSVP 634
Query: 117 VVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDK 176
+V EF EVFPD++P +PPERE++F IDL+P + +S+ PY M+ +EL ELK DLL+K
Sbjct: 635 IVREFPEVFPDDLPGIPPEREIDFGIDLIPDTRPISIPPYRMAPAELKELK----DLLEK 690
Query: 177 KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVF 236
F+RPSVSPWGAPVL V+KKDGS+R+CIDYRQLNKVTIKN+YPLPRIDDL DQL GA F
Sbjct: 691 GFIRPSVSPWGAPVLFVRKKDGSLRICIDYRQLNKVTIKNKYPLPRIDDLFDQLQGATCF 750
Query: 237 SKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLD 296
SKIDLRSGYHQ++V++ D+ KTAFRTRYGHYE+ VM FG+TNAP FM+ MNR+F +LD
Sbjct: 751 SKIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFRPYLD 810
Query: 297 KFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGN 356
FV++FIDDILIYS+ EE+HA HL+ VLQ LK+++LYAK SKCEFWL V+FLGH+ SG+
Sbjct: 811 MFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGD 870
Query: 357 GIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVW 416
GI VD K++AV W P S TEIRSFLGLAGYYRRF+EGFS +A PLT+LT K F W
Sbjct: 871 GIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTGKFQW 930
Query: 417 DAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLR 476
CE SF ELK+RL TAP+L LP+ + VVYCDAS+ GLG VLMQ+GKV+AYASRQL+
Sbjct: 931 SEACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDASRIGLGCVLMQNGKVIAYASRQLK 990
Query: 477 VHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLEL 536
VHEKN PTHDLELA VVF LK+WRHYLYG ++F+DHKSL+Y+ QK LN+RQRRWLEL
Sbjct: 991 VHEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTDHKSLQYVLTQKALNLRQRRWLEL 1050
Query: 537 LKDYD 541
LKDYD
Sbjct: 1051 LKDYD 1055
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 652 bits (1682), Expect = 0.0
Identities = 322/541 (59%), Positives = 407/541 (74%), Gaps = 12/541 (2%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVC 60
++ M+V +P G + C+ P+ + F +L+ L +DVI GM+WL +R
Sbjct: 405 LRQPMLVHSPG-GEIAVDTACIDVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGV 463
Query: 61 INCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNE 120
I+C + V ++ S + + + ER G + L L+ +P+V
Sbjct: 464 IDCRRREVTLTTPWG-SDMRATMDQDPRLTERAG----GIFTMLPLKG------MPIVQR 512
Query: 121 FHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVR 180
F +VFP+++P +PP+R++EF IDL+PG +S PY M +EL ELKKQ+ +L +K FVR
Sbjct: 513 FPDVFPEDLPGMPPDRDIEFIIDLIPGTAPISKRPYRMPVNELEELKKQIRELQEKGFVR 572
Query: 181 PSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
PS SPWGA VL VKKKDGSMR+C+DYR LN+VTIKN+YPLPRID+L DQL GAKVFSKID
Sbjct: 573 PSSSPWGAQVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDNLFDQLKGAKVFSKID 632
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
LRSGYHQ+K++ ED+ KTAF TRYG YE+ VM FG+TNAP FM MN++F +LDKFVV
Sbjct: 633 LRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMEYLDKFVV 692
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAV 360
VFIDDILIYSK EEEHA+HL++VLQ L++ KLYAK SKCEFWL EV+FLGHV S G+AV
Sbjct: 693 VFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAV 752
Query: 361 DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQC 420
DP+KV+AV++W+ PKSVTEIRSFLGLA YYRRFIEGFSK+A P+TQL K K FVW QC
Sbjct: 753 DPAKVEAVTEWKAPKSVTEIRSFLGLARYYRRFIEGFSKIARPMTQLLKKEKKFVWSEQC 812
Query: 421 ESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEK 480
+ SF +LK++LT+APIL+LP + FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+
Sbjct: 813 QESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEE 872
Query: 481 NSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDY 540
N PTHDLELAAVV LKIWRHYL G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KDY
Sbjct: 873 NYPTHDLELAAVVHALKIWRHYLIGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDY 932
Query: 541 D 541
D
Sbjct: 933 D 933
>gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
gi|37534498|ref|NP_921551.1| putative gag-pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1470
Score = 652 bits (1681), Expect = 0.0
Identities = 323/541 (59%), Positives = 406/541 (74%), Gaps = 12/541 (2%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVC 60
++ M+V +P G + C+ P+ + F +L+ L +DVI GM+WL +R
Sbjct: 405 LRQPMLVHSPG-GEIAVDTACIDVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGV 463
Query: 61 INCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNE 120
I+C + V ++ S + + + ER G + L L+ +PVV
Sbjct: 464 IDCRRREVTLTTPWG-SDMRATMDQDPRLTERAG----GIFTMLPLKG------MPVVQR 512
Query: 121 FHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVR 180
F +VFP+++P +PP+R++EF IDL+PG +S PY M +EL ELKKQ+ +L +K FVR
Sbjct: 513 FPDVFPEDLPGMPPDRDIEFIIDLIPGTAPISKRPYRMPVNELEELKKQIRELQEKGFVR 572
Query: 181 PSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
PS SPWGAPVL VKKKD SMR+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKID
Sbjct: 573 PSSSPWGAPVLFVKKKDSSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKID 632
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
LRSGYHQ+K++ ED+ KTAF TRYG YE+ VM FG+TNAP FM MN++F +LDKFVV
Sbjct: 633 LRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVV 692
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAV 360
VFIDDILIYSK EEEHA+HL++VLQ L++ KLYAK SKCEFWL EV+FLGHV S G+AV
Sbjct: 693 VFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAV 752
Query: 361 DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQC 420
DP+KV+AV++W+ PKSVTEIRSFLGLA YYRRFIE FSK+A P+TQL K K FVW QC
Sbjct: 753 DPAKVEAVTEWKAPKSVTEIRSFLGLAEYYRRFIEWFSKIARPMTQLLKKEKKFVWSEQC 812
Query: 421 ESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEK 480
+ SF +LK++LT+APIL+LP + FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+
Sbjct: 813 QESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEE 872
Query: 481 NSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDY 540
N PTHDLELAAVV LKIWRHYL G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KDY
Sbjct: 873 NYPTHDLELAAVVHALKIWRHYLIGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDY 932
Query: 541 D 541
D
Sbjct: 933 D 933
>ref|XP_472505.1| OSJNBb0049I21.6 [Oryza sativa (japonica cultivar-group)]
gi|38346970|emb|CAD39728.2| OSJNBb0049I21.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1606
Score = 648 bits (1672), Expect = 0.0
Identities = 320/541 (59%), Positives = 406/541 (74%), Gaps = 12/541 (2%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVC 60
++ M+V +P G + C+ P+ + F +L+ L +DVI GM+WL +R
Sbjct: 338 LRQPMLVHSPG-GEIAVDTACIDVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGI 396
Query: 61 INCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNE 120
I+C + V ++ S + + + ER G + L L+ +V+ R P
Sbjct: 397 IDCRRREVTLTTPWG-SDMRATMDQDPRLTERAG----GIFTMLPLKGMLVVQRFP---- 447
Query: 121 FHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVR 180
+VF +++P +PP+R++EF IDL+PG +S PY M +EL ELKKQ+ +L +K FV
Sbjct: 448 --DVFAEDLPRMPPDRDIEFIIDLIPGTAPISKRPYRMPVNELEELKKQIRELQEKGFVC 505
Query: 181 PSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
PS SPWGAPVL VKKKDGSMR+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKID
Sbjct: 506 PSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKID 565
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
LRSGYHQ+K++ D+ KTAF TRYG YE+ VM FG+TNAP FM MN++F +LDKFVV
Sbjct: 566 LRSGYHQLKIRTGDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVV 625
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAV 360
VFIDDILIYSK EEEHA+HL++VL+ L++ KLYAK SKCEFWL E++FLGHV S G+AV
Sbjct: 626 VFIDDILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFWLKELAFLGHVISAGGVAV 685
Query: 361 DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQC 420
DP+KV+AV++W+ PKSVTEIRSFLGLAGYYRRFIEGFSK+A P+TQL K K FVW QC
Sbjct: 686 DPAKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFIEGFSKIARPMTQLLKKEKKFVWSEQC 745
Query: 421 ESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEK 480
+ SF +LK++LT+APIL+LP + FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+
Sbjct: 746 QESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEE 805
Query: 481 NSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDY 540
N PTHDLELAAVV LKIWRHYL G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KDY
Sbjct: 806 NYPTHDLELAAVVHALKIWRHYLIGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDY 865
Query: 541 D 541
D
Sbjct: 866 D 866
>gb|AAT81698.1| putative retrotransposon protein, 5'-partial [Oryza sativa
(japonica cultivar-group)]
Length = 1633
Score = 646 bits (1666), Expect = 0.0
Identities = 319/552 (57%), Positives = 412/552 (73%), Gaps = 23/552 (4%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCP---LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYN 57
++ ++V TP+ +++ R P + + G F +L+ L +DVI GM+WL +
Sbjct: 240 LRRPLMVSTPSSQALSLQ----RSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARH 295
Query: 58 RVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPV 117
+ I+C N+ V +S + + +T L S S NQ++++++P+
Sbjct: 296 KGVIDCANRKVTLTSND----GRVVTVHAL-----------SSEFLRSRLNQIILEKIPI 340
Query: 118 VNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKK 177
V E+ +VFPD++P +PP+R++EF IDLVPG + PY M+A+ELAE+K+Q++DLL K
Sbjct: 341 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 400
Query: 178 FVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFS 237
++RPS SPWGAPV+ V+KKD + R+C+DYR LN VTIKN+YPLPRIDDL DQL GA VFS
Sbjct: 401 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 460
Query: 238 KIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDK 297
KIDLRSGYHQ+++K+ED+ KTAF TRYG +E VM FG+TNAP FM MN++F +LDK
Sbjct: 461 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 520
Query: 298 FVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNG 357
FVVVFIDDILIYS+ +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV S G
Sbjct: 521 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISARG 580
Query: 358 IAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWD 417
+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+A P+T+L K + W
Sbjct: 581 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLFQKDVKYKWS 640
Query: 418 AQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRV 477
+CE SF ELK RL +APILILP P++ F VYCDASKFGLG VLMQDGKVVAYASRQLR
Sbjct: 641 EECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKFGLGCVLMQDGKVVAYASRQLRP 700
Query: 478 HEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELL 537
HEKN PTHDLELAAVV LKIWRHYL+G+R EV++DHKSLKY+F Q +LNMRQRRWLEL+
Sbjct: 701 HEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 760
Query: 538 KDYDFCNAHFRL 549
KDYD H+ L
Sbjct: 761 KDYDM-GIHYHL 771
>gb|AAT81665.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 2784
Score = 646 bits (1666), Expect = 0.0
Identities = 319/552 (57%), Positives = 412/552 (73%), Gaps = 23/552 (4%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCP---LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYN 57
++ ++V TP+ +++ R P + + G F +L+ L +DVI GM+WL +
Sbjct: 1391 LRRPLMVSTPSSQALSLQ----RSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARH 1446
Query: 58 RVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPV 117
+ I+C N+ V +S + + +T L S S NQ++++++P+
Sbjct: 1447 KGVIDCANRKVTLTSND----GRVVTVHAL-----------SSEFLRSRLNQIILEKIPI 1491
Query: 118 VNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKK 177
V E+ +VFPD++P +PP+R++EF IDLVPG + PY M+A+ELAE+K+Q++DLL K
Sbjct: 1492 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 1551
Query: 178 FVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFS 237
++RPS SPWGAPV+ V+KKD + R+C+DYR LN VTIKN+YPLPRIDDL DQL GA VFS
Sbjct: 1552 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 1611
Query: 238 KIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDK 297
KIDLRSGYHQ+++K+ED+ KTAF TRYG +E VM FG+TNAP FM MN++F +LDK
Sbjct: 1612 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 1671
Query: 298 FVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNG 357
FVVVFIDDILIYS+ +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV S G
Sbjct: 1672 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISARG 1731
Query: 358 IAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWD 417
+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+A P+T+L K + W
Sbjct: 1732 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLFQKDVKYKWS 1791
Query: 418 AQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRV 477
+CE SF ELK RL +APILILP P++ F VYCDASKFGLG VLMQDGKVVAYASRQLR
Sbjct: 1792 EECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKFGLGCVLMQDGKVVAYASRQLRP 1851
Query: 478 HEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELL 537
HEKN PTHDLELAAVV LKIWRHYL+G+R EV++DHKSLKY+F Q +LNMRQRRWLEL+
Sbjct: 1852 HEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 1911
Query: 538 KDYDFCNAHFRL 549
KDYD H+ L
Sbjct: 1912 KDYDM-GIHYHL 1922
Score = 161 bits (407), Expect = 6e-38
Identities = 98/352 (27%), Positives = 161/352 (44%), Gaps = 32/352 (9%)
Query: 166 LKKQLEDLLDKKFVRPSVSP-WGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRID 224
++++L+ LL F+R + P W A ++V+K +G R+C+D+ LNK K+ +PLPRID
Sbjct: 446 IREELDKLLKASFIREVLHPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHFPLPRID 505
Query: 225 DLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFM 284
L+D G ++ S +D SGYHQI + ED +KT T +G + Y MPFG+ A F
Sbjct: 506 QLVDSTAGCELLSFLDAYSGYHQISMAKEDEEKTTLITPFGVFCYVKMPFGLITAGNTFQ 565
Query: 285 EYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLS 344
+ + L V ++DDI+ +K + L+ L+
Sbjct: 566 RTVQGALNDLLGHNVEAYVDDIVFKTKTSDSLIDDLRETFDNLR---------------- 609
Query: 345 EVSFLGHVTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPL 404
GI +P K+ A+ ++P + E++ G RF+ + P
Sbjct: 610 -----------RGIEENPEKIKAIENMKSPTRLKEVQKLTGCMAALSRFVARMGERGQPF 658
Query: 405 TQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQD 464
L K FVW + E +F LK+ L+ P+L+ P+P E +Y A+ + +++ +
Sbjct: 659 FTLLKKQDKFVWTQEAEDAFIALKRYLSDPPVLVAPQPNEELFLYIAATPYSESTIIIVE 718
Query: 465 ----GKVVAYASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFS 512
++V Y S L + P L AV+ + RHY R V S
Sbjct: 719 RAKVQRLVYYVSAALHDAKTRYPQIQKLLYAVIMTSRKLRHYFQAHRVTVVS 770
>emb|CAE05392.1| OSJNBa0022F16.16 [Oryza sativa (japonica cultivar-group)]
gi|50930029|ref|XP_474542.1| OSJNBa0022F16.16 [Oryza
sativa (japonica cultivar-group)]
Length = 1402
Score = 645 bits (1665), Expect = 0.0
Identities = 319/537 (59%), Positives = 404/537 (74%), Gaps = 12/537 (2%)
Query: 5 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVCINCF 64
M+V +P G VT S C+ P+ + F +L+ L +D+I GM+WL N+ I+C
Sbjct: 344 MIVHSPG-GEVTVSHACIDVPIHLRDVVFPSNLMVLIPQTLDIILGMDWLTKNKGIIDCR 402
Query: 65 NKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNEFHEV 124
+ V ++ S + + + ER G + + + +PVV F +V
Sbjct: 403 RREVTLTTPWG-SDMRATMDQDPRLTERAG----------GIFTMLPMKGMPVVQRFPDV 451
Query: 125 FPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPSVS 184
FP+++P +PP+R++EF IDL+PG +S PY MS +EL ELKKQ+ +L +K FVRPS S
Sbjct: 452 FPEDLPGMPPDRDIEFIIDLIPGTAPISKRPYRMSVNELEELKKQIRELQEKGFVRPSSS 511
Query: 185 PWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSG 244
PWGAPVL VKKKDGSMR+C+DYR LN+VTIKN+Y LPRIDDL DQL GAKVFSKIDLRSG
Sbjct: 512 PWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYLLPRIDDLFDQLKGAKVFSKIDLRSG 571
Query: 245 YHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFID 304
YHQ+K++ D+ KTAF TRYG YE+ VM FG+TNAP FM M ++F +LDKFVVVFID
Sbjct: 572 YHQLKIRIGDIPKTAFLTRYGLYEFTVMSFGLTNAPVYFMNLMYKVFMEYLDKFVVVFID 631
Query: 305 DILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSK 364
DILIYSK EEEHA+HL++VL+ L++ KLYAK SKCEFWL EV+FLGHV S G+AVDP+K
Sbjct: 632 DILIYSKDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAK 691
Query: 365 VDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSF 424
V+AV++W+ PKSVTEI+SFLGLAGYYRRFIEGFSK+A P+TQL K K FVW QC+ SF
Sbjct: 692 VEAVTEWKAPKSVTEIQSFLGLAGYYRRFIEGFSKIARPMTQLLKKEKKFVWSEQCQESF 751
Query: 425 NELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEKNSPT 484
+LK++L + PIL+LP + FV+YCDAS+ GLGGVLMQDGKVVAYASRQLR HE+N PT
Sbjct: 752 EQLKEKLASTPILVLPDNRKDFVIYCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPT 811
Query: 485 HDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYD 541
HDLELAAVV LKIWR+YL G+ ++++DHKSLKY+F Q +LN+RQRRWLEL+KDYD
Sbjct: 812 HDLELAAVVHALKIWRYYLIGNHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYD 868
>emb|CAD40358.2| OSJNBa0093P23.4 [Oryza sativa (japonica cultivar-group)]
gi|50922619|ref|XP_471670.1| OSJNBa0041M21.9 [Oryza
sativa (japonica cultivar-group)]
gi|38343985|emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa
(japonica cultivar-group)]
Length = 1543
Score = 645 bits (1663), Expect = 0.0
Identities = 316/544 (58%), Positives = 407/544 (74%), Gaps = 22/544 (4%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCP---LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYN 57
++ ++V TP+ +++ R P + + G F +L+ L +DVI GM+WL +
Sbjct: 477 LRRPLMVSTPSNQALSLQ----RSPSVRIEIQGIPFLANLILLESKDLDVILGMDWLARH 532
Query: 58 RVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPV 117
+ I+C N+ V +S + Q +T L S S NQ+ ++ +P+
Sbjct: 533 KGVIDCANRKVTLTSND----GQVVTVHAL-----------SSEFLRSRLNQITLEEIPI 577
Query: 118 VNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKK 177
V E+ +VFPD++P +PP+R++EF IDLVPG L+ PY M+A+ELAE+K+Q++DLL K
Sbjct: 578 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTLIHKRPYRMAANELAEVKRQVDDLLQKG 637
Query: 178 FVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFS 237
++RPS SPWGAPV+ V+KKD + R+C+DYR LN VTIKN+YPLPRIDDL DQL GA +FS
Sbjct: 638 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATIFS 697
Query: 238 KIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDK 297
KIDLRSGYHQ+++K+ED+ KTAF TRYG +E VM FG+TNAP FM MN++F +LDK
Sbjct: 698 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 757
Query: 298 FVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNG 357
FVVVFIDDILIYS+ +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV S G
Sbjct: 758 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 817
Query: 358 IAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWD 417
+AVDPS V++++ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+A P+T+L K + W
Sbjct: 818 VAVDPSNVESITNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 877
Query: 418 AQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRV 477
+CE SF ELK RL +APILILP P++ F VYCDASK GLG VLMQDGKVVAYASRQLR
Sbjct: 878 EECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 937
Query: 478 HEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELL 537
HEKN PTHDLELAAVV LKIWRHYL+G+R EV++DHKSLKY+F Q +LNMRQRRWLEL+
Sbjct: 938 HEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 997
Query: 538 KDYD 541
KDYD
Sbjct: 998 KDYD 1001
>gb|AAD22153.1| polyprotein [Sorghum bicolor]
Length = 1484
Score = 644 bits (1662), Expect = 0.0
Identities = 318/541 (58%), Positives = 400/541 (73%), Gaps = 13/541 (2%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVC 60
M M+V +P G++ SL C LS+ G DF + + + G+DVI G++W++ +
Sbjct: 424 MNTPMLVNSPG-GTIPVSLRCPSASLSLRGVDFPISPMVMRTSGIDVILGLDWMKQHATN 482
Query: 61 INCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNE 120
INC + V LTT + +++ D + L A ++ V + VV+E
Sbjct: 483 INCKERVV------------VLTTPKGERISVDVTMQAPLAAKVNQLTDDVDPQNLVVDE 530
Query: 121 FHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVR 180
F +VFPDE+P +PP+R++EF I+L+PG ++ PY M EL ELKKQ+++L DK F+R
Sbjct: 531 FPDVFPDELPGMPPDRDIEFIIELLPGTAPIAKRPYRMGVKELEELKKQIKELQDKGFIR 590
Query: 181 PSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
PS SPWGAPV+ V KKDGS R+C+DYR LN+VTIKN+YPLPRIDDL DQL GA VFSKID
Sbjct: 591 PSSSPWGAPVIFVDKKDGSQRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLRGACVFSKID 650
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
LRSGYHQ+K+++ D+ KTAF TRYG YEY VM FG+TNAP FM MN++F +LDKFVV
Sbjct: 651 LRSGYHQLKIRNSDIPKTAFTTRYGLYEYTVMSFGLTNAPAYFMYMMNKVFMEYLDKFVV 710
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAV 360
VFIDDIL++SK +EEHA+HL++VLQ L+E KLYAK SKCEFWL EVSFLGHV S GIAV
Sbjct: 711 VFIDDILVFSKTKEEHAEHLRLVLQKLREHKLYAKRSKCEFWLEEVSFLGHVVSNGGIAV 770
Query: 361 DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQC 420
DPSKV V W+ P V+EIRSFLGLAGYYRRFIEGFSKLA P+T L K FVW +C
Sbjct: 771 DPSKVKDVLNWKPPTDVSEIRSFLGLAGYYRRFIEGFSKLAKPMTALLEKNAKFVWSDKC 830
Query: 421 ESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEK 480
++SF E K+RLTTAP+L+LP + F +YCDAS+ GLG VLMQ+G+VVAYASRQLR HE
Sbjct: 831 QASFEEFKKRLTTAPVLVLPDLSKSFSIYCDASRLGLGCVLMQEGRVVAYASRQLRKHEL 890
Query: 481 NSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDY 540
N PTHDLELAAVV LKIWRHYL G + ++++DHKSLKY+F Q +LN+RQRRWLEL+KDY
Sbjct: 891 NYPTHDLELAAVVHALKIWRHYLIGHKSDIYTDHKSLKYIFTQTDLNLRQRRWLELIKDY 950
Query: 541 D 541
D
Sbjct: 951 D 951
>ref|XP_471222.1| OSJNBb0016B03.11 [Oryza sativa (japonica cultivar-group)]
gi|38347555|emb|CAD39386.2| OSJNBb0016B03.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1374
Score = 644 bits (1661), Expect = 0.0
Identities = 318/548 (58%), Positives = 408/548 (74%), Gaps = 30/548 (5%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCP---LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYN 57
++ ++V TP+ +++ R P + + G F +L+ L +DVI GM+WL +
Sbjct: 400 LRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARH 455
Query: 58 RVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDG-ILMFSLMASLSLE---NQVVID 113
+ I+C N+ V S +DG ++ M+S SL NQ+ ++
Sbjct: 456 KGVIDCANRKVTLIS-------------------KDGRVVTVHAMSSESLRSRLNQITLE 496
Query: 114 RLPVVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDL 173
+P+V E+ +VFPD++P +PP+R++EF IDLVPG + PY M+A+ELAE+K+Q++DL
Sbjct: 497 EIPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDL 556
Query: 174 LDKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGA 233
L K ++RPS SPWGAPV+ V+KKD + R+C+DYR LN VTIKN+YPLPRIDDL DQL GA
Sbjct: 557 LQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGA 616
Query: 234 KVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHA 293
VFSKIDLRSGYHQ+++K+ED+ KTAF TRYG +E VM FG+TNAP FM MN++F
Sbjct: 617 TVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFME 676
Query: 294 FLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVT 353
+LDKFVVVFIDDILIYS+ +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV
Sbjct: 677 YLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVI 736
Query: 354 SGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKS 413
S G+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+A P+T+L K
Sbjct: 737 SAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVK 796
Query: 414 FVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASR 473
+ W +CE SF ELK RL +APILILP P++ F VYCDASK GLG VLMQDGKVVAYASR
Sbjct: 797 YKWSEECEQSFQELKNRLVSAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASR 856
Query: 474 QLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRW 533
QLR HEKN PTHDLELAAVV LKIWRHYL+G+R EV++DHKSLKY+F Q +LNMRQRRW
Sbjct: 857 QLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRW 916
Query: 534 LELLKDYD 541
LEL+KDYD
Sbjct: 917 LELIKDYD 924
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1679
Score = 643 bits (1658), Expect = 0.0
Identities = 317/544 (58%), Positives = 408/544 (74%), Gaps = 22/544 (4%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCP---LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYN 57
++ ++V TP+ +++ R P + + G F +L+ L +DVI GM+WL +
Sbjct: 373 LRRPLMVSTPSDQALSLQ----RSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARH 428
Query: 58 RVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPV 117
+ I+C N+ V +S + + +T L SL + L NQ+ ++ +P+
Sbjct: 429 KGVIDCANRKVTLTSND----GRVVTVHALSSE--------SLRSKL---NQITLEEIPI 473
Query: 118 VNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKK 177
V E+ +VFPD++P +PP+R++EF IDLVPG + PY M+A+ELAE+K+Q++DLL K
Sbjct: 474 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 533
Query: 178 FVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFS 237
++RPS SPWGAPV+ V+KKD + R+C+DYR LN VTIKN+YPLPRIDDL DQL GA VFS
Sbjct: 534 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 593
Query: 238 KIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDK 297
KIDLRSGYHQ+++K+ED+ KTAF TRYG +E VM FG+TNAP FM MN++F +LDK
Sbjct: 594 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 653
Query: 298 FVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNG 357
FVVVFIDDILIYS+ +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV S G
Sbjct: 654 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 713
Query: 358 IAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWD 417
+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+A P+T+L K + W
Sbjct: 714 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 773
Query: 418 AQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRV 477
+CE SF ELK RL +APILILP P++ F VYCDASK GLG VLMQDGKVVAYASRQLR
Sbjct: 774 EECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 833
Query: 478 HEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELL 537
HEKN PTHDLELAAVV LKIWRHYL+G+R EV++DHKSLKY+F Q +LNMRQRRWLEL+
Sbjct: 834 HEKNYPTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 893
Query: 538 KDYD 541
KDYD
Sbjct: 894 KDYD 897
>gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531590|ref|NP_920097.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881768|gb|AAM01169.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 643 bits (1658), Expect = 0.0
Identities = 311/537 (57%), Positives = 402/537 (73%), Gaps = 16/537 (2%)
Query: 5 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVCINCF 64
++V TP V ++ C + + G F L+ L +DVI GM+WL +R I+C
Sbjct: 383 LLVNTPGN-QVFSTRYCPSVTIEIEGVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCA 441
Query: 65 NKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNEFHEV 124
N+ V +++ E+ + F ++ + G+++ NQV + +P+V ++ +V
Sbjct: 442 NRKVTLTNSNGETVSFFASSPK-----SHGVVL----------NQVALQEIPIVQDYPDV 486
Query: 125 FPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPSVS 184
FP+++P +PP+R++EF IDLVPG + PY M+A+ELAE+KKQ++DLL K ++RPS S
Sbjct: 487 FPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTS 546
Query: 185 PWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSG 244
PWGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GA VFSKIDLRSG
Sbjct: 547 PWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSG 606
Query: 245 YHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFID 304
YHQ+++++ED+ KTAF TRYG +E VM FG+TNAP FM MN++F +LDKFVVVFID
Sbjct: 607 YHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFID 666
Query: 305 DILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSK 364
DILIYSK +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV S G+AVDPS
Sbjct: 667 DILIYSKTKEEHKEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSN 726
Query: 365 VDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSF 424
V++V W+ PK+V+E+RSFLGLAGYYRRFIE FSK+A P+T+L K + W CE SF
Sbjct: 727 VESVLSWKQPKTVSEVRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVKYKWTEDCEQSF 786
Query: 425 NELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEKNSPT 484
ELK+RL TAP+LILP + F VYCDAS+ GLG VLMQ+GKVVAYASRQLR HE N PT
Sbjct: 787 QELKKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRPHENNYPT 846
Query: 485 HDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYD 541
HDLELAAVV LKIWRHYLYG+R EV++DHKSLKY+F Q +LNMRQRRWLEL+KDYD
Sbjct: 847 HDLELAAVVHALKIWRHYLYGNRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYD 903
>gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1795
Score = 642 bits (1657), Expect = 0.0
Identities = 312/541 (57%), Positives = 398/541 (72%), Gaps = 16/541 (2%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVC 60
++ +++ TP G +T P+ + G F DL+ L +DVI GMNWL +
Sbjct: 725 LRNPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGV 783
Query: 61 INCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNE 120
++C +TV E+ F ++ E +Q+ + +P+V E
Sbjct: 784 VDCARRTVTLYRGPEQPVVFFAPPTSVRSSEL---------------HQIGLSEIPIVRE 828
Query: 121 FHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVR 180
F +VFP+E+P +PP+RE+EF IDLVPG + PY M+A+ELAE+KKQLE+L +K ++R
Sbjct: 829 FGDVFPEELPGMPPKREIEFRIDLVPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIR 888
Query: 181 PSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
PS SPWGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GA VFSKID
Sbjct: 889 PSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 948
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
LRSGYHQ+++++ED+ KTAF TRYG YE+ VM FG+TNAP FM MN++F +LDKFVV
Sbjct: 949 LRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVV 1008
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAV 360
VFIDDILIYS+ EE+H HL++VL L+E +LYAKLSKCEFWLSEV FLGHV S G+AV
Sbjct: 1009 VFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAV 1068
Query: 361 DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQC 420
DP V AV++W+ PK+VT+IRSFLGLAGYYRRFIE FSK+A P+TQL K + FVW QC
Sbjct: 1069 DPDTVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQC 1128
Query: 421 ESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEK 480
E +F LK++L ++P+LILP + F+VYCDAS+ GLG VLMQDG VVAYASRQLR HE
Sbjct: 1129 EKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEG 1188
Query: 481 NSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDY 540
N PTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+F Q +LN+RQRRWLEL+KDY
Sbjct: 1189 NYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDY 1248
Query: 541 D 541
D
Sbjct: 1249 D 1249
>ref|XP_471161.1| OSJNBb0080H08.12 [Oryza sativa (japonica cultivar-group)]
gi|38344420|emb|CAE02386.2| OSJNBb0080H08.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1666
Score = 642 bits (1657), Expect = 0.0
Identities = 316/544 (58%), Positives = 408/544 (74%), Gaps = 22/544 (4%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCP---LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYN 57
++ ++V TP+ +++ R P + + G F +L+ L +DVI GM+WL +
Sbjct: 657 LRRPLMVSTPSNQALSLQ----RSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARH 712
Query: 58 RVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPV 117
+ I+C N+ V +S + + +T L SL + L NQ+ ++ +P+
Sbjct: 713 KGVIDCANRKVTLNSYD----GRVVTVHALSSE--------SLRSRL---NQITLEEIPI 757
Query: 118 VNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKK 177
V E+ +VFPD++P +PP+R++EF IDLVPG + PY M+A+ELAE+K+Q++DLL K
Sbjct: 758 VREYSDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 817
Query: 178 FVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFS 237
++RPS SPWGAPV+ V+KKD + R+C+DYR LN VTIKN+YPLPRIDDL DQL GA VFS
Sbjct: 818 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 877
Query: 238 KIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDK 297
KIDLRSGYHQ+++K+ED+ KTAF TRYG +E VM FG+TNAP FM MN++F +LDK
Sbjct: 878 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 937
Query: 298 FVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNG 357
FVVVFIDDILIYS+ +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV S G
Sbjct: 938 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 997
Query: 358 IAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWD 417
+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+A P+T+L K + W
Sbjct: 998 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 1057
Query: 418 AQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRV 477
+CE SF ELK RL +APILILP P++ F VYCDASK GLG VLMQDGKVVAYASRQLR
Sbjct: 1058 EECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 1117
Query: 478 HEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELL 537
HEKN PTHD+ELAAVV LKIWRHYL+G+R EV++DHKSLKY+F Q +LNMRQRRWLEL+
Sbjct: 1118 HEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 1177
Query: 538 KDYD 541
KDYD
Sbjct: 1178 KDYD 1181
>gb|AAP53141.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533104|ref|NP_920854.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22539088|gb|AAN01260.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1683
Score = 642 bits (1656), Expect = 0.0
Identities = 316/544 (58%), Positives = 408/544 (74%), Gaps = 22/544 (4%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCP---LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYN 57
++ ++V TP+ +++ R P + + G F +L+ L +DVI GM+WL +
Sbjct: 678 LRRPLMVSTPSNQALSLQ----RSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARH 733
Query: 58 RVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPV 117
+ I+C N+ V +S + + +T L SL + L NQ+ ++ +P+
Sbjct: 734 KGVIDCANRKVTLNSYD----GRVVTVHALSSE--------SLRSRL---NQITLEEIPI 778
Query: 118 VNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKK 177
V E+ +VFPD++P +PP+R++EF IDLVPG + PY M+A+ELAE+K+Q++DLL K
Sbjct: 779 VREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 838
Query: 178 FVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFS 237
++RPS SPWGAPV+ V+KKD + R+C+DYR LN VTIKN+YPLPRIDDL DQL GA VFS
Sbjct: 839 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 898
Query: 238 KIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDK 297
KIDLRSGYHQ+++K+ED+ KTAF TRYG +E VM FG+TNAP FM MN++F +LDK
Sbjct: 899 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 958
Query: 298 FVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNG 357
FVVVFIDDILIYS+ +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV S G
Sbjct: 959 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 1018
Query: 358 IAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWD 417
+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+A P+T+L K + W
Sbjct: 1019 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 1078
Query: 418 AQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRV 477
+CE SF ELK RL +APILILP P++ F VYCDASK GLG VLMQDGKVVAYASRQLR
Sbjct: 1079 EECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRP 1138
Query: 478 HEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELL 537
HEKN PTHD+ELAAVV LKIWRHYL+G+R EV++DHKSLKY+F Q +LNMRQRRWLEL+
Sbjct: 1139 HEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 1198
Query: 538 KDYD 541
KDYD
Sbjct: 1199 KDYD 1202
>gb|AAP53126.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533074|ref|NP_920839.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22539073|gb|AAN01245.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1785
Score = 642 bits (1656), Expect = 0.0
Identities = 311/541 (57%), Positives = 398/541 (73%), Gaps = 16/541 (2%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVC 60
++ +++ TP G +T P+ + G F DL+ L +DVI GMNWL +
Sbjct: 715 LRNPLLITTPG-GVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGV 773
Query: 61 INCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNE 120
++C +TV E+S F ++ E +Q+ + +P+V E
Sbjct: 774 VDCARRTVTLYRGPEQSVVFFAPPTSVRSSEL---------------HQIELSEIPIVRE 818
Query: 121 FHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVR 180
F +VFP+E+P +PP+RE+EF IDL PG + PY M+A+ELAE+KKQLE+L +K ++R
Sbjct: 819 FGDVFPEELPGMPPKREIEFRIDLAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIR 878
Query: 181 PSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
PS SPWGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GA VFSKID
Sbjct: 879 PSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 938
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
LRSGYHQ+++++ED+ KTAF TRYG YE+ VM FG+TNAP FM MN++F +LDKFVV
Sbjct: 939 LRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVV 998
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAV 360
VFIDDI+IYS+ EE+H HL++VL L+E +LYAKLSKCEFWLSEV FLGHV S G+AV
Sbjct: 999 VFIDDIMIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAV 1058
Query: 361 DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQC 420
DP V AV++W+ PK+VT+IRSFLGLAGYYRRFIE FSK+A P+TQL K + FVW QC
Sbjct: 1059 DPETVTAVTEWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQC 1118
Query: 421 ESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEK 480
E +F LK++L ++P+LILP + F+VYCDAS+ GLG VLMQDG VVAYASRQLR HE
Sbjct: 1119 EKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVAYASRQLRPHEG 1178
Query: 481 NSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDY 540
N PTHDLELAAVV LKIWRHYL G+R E+++DHKSLKY+F Q +LN+RQRRWLEL+KDY
Sbjct: 1179 NYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDY 1238
Query: 541 D 541
D
Sbjct: 1239 D 1239
>ref|XP_469373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27552560|gb|AAO19383.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1770
Score = 642 bits (1656), Expect = 0.0
Identities = 316/544 (58%), Positives = 405/544 (74%), Gaps = 22/544 (4%)
Query: 1 MKGEMVVETPAKGSVTTSLVCLRCP---LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYN 57
++ ++V TP +++ R P + + G F +L+ L +DVI GM+WL
Sbjct: 684 LRRPLMVSTPCNQALSLQ----RSPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARY 739
Query: 58 RVCINCFNKTVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPV 117
+ I+C N+ V +S E + + + + SL + L NQ+ ++ +P+
Sbjct: 740 KGVIDCANRKVTLTSNEGQVVTVYALSSE------------SLRSRL---NQITLEEIPI 784
Query: 118 VNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKK 177
V E+ +VFPD++P +PP+R +EF IDLVPG + PY M+A+ELAE+K+Q++DLL K
Sbjct: 785 VREYPDVFPDDLPGMPPKRGIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKG 844
Query: 178 FVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFS 237
++RPS SPWGAPV+ V+KKD + R+C+DYR LN VTIKN+YPLPRIDDL DQL GA VFS
Sbjct: 845 YIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFS 904
Query: 238 KIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDK 297
KIDLRSGYHQ+++K+ED+ KTAF TRYG +E VM FG+TNAP FM MN++F +LDK
Sbjct: 905 KIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDK 964
Query: 298 FVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNG 357
FVVVFIDDILIYS+ +EEH +HL++ L+ L+E +LYAK SKCEFWLSEV FLGHV S G
Sbjct: 965 FVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGG 1024
Query: 358 IAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWD 417
+AVDPS V++V+ W+ PK+V+EIRSFLGLAGYYRRFIE FSK+A P+T+L K + W
Sbjct: 1025 VAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWS 1084
Query: 418 AQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRV 477
+CE SF ELK RL +APILILP P++ F VYCDASKFGLG VLMQDGKVVAYASRQLR
Sbjct: 1085 EECEQSFQELKDRLISAPILILPDPKKGFQVYCDASKFGLGCVLMQDGKVVAYASRQLRP 1144
Query: 478 HEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELL 537
HEKN PTHDLEL AVV LKIWRHYL+G+R EV++DHKSLKY+F Q +LNMRQRRWLEL+
Sbjct: 1145 HEKNYPTHDLELDAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELI 1204
Query: 538 KDYD 541
KDYD
Sbjct: 1205 KDYD 1208
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 930,549,506
Number of Sequences: 2540612
Number of extensions: 38791082
Number of successful extensions: 179005
Number of sequences better than 10.0: 35242
Number of HSP's better than 10.0 without gapping: 2613
Number of HSP's successfully gapped in prelim test: 32629
Number of HSP's that attempted gapping in prelim test: 117535
Number of HSP's gapped (non-prelim): 36197
length of query: 552
length of database: 863,360,394
effective HSP length: 133
effective length of query: 419
effective length of database: 525,458,998
effective search space: 220167320162
effective search space used: 220167320162
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)
Medicago: description of AC144765.10