BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144730.2 - phase: 0 /pseudo
(866 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 263 2e-68
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 256 2e-66
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 253 2e-65
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 251 6e-65
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 248 8e-64
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 246 2e-63
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 238 8e-61
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 237 1e-60
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 235 4e-60
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 232 3e-59
ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sa... 231 6e-59
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 230 2e-58
emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana] ... 229 2e-58
ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cu... 225 6e-57
gb|AAP53029.1| putative retrotransposon-related protein [Oryza s... 222 4e-56
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 219 2e-55
ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cu... 214 8e-54
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 214 1e-53
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 214 1e-53
ref|NP_916849.1| retrovirus-related pol polyprotein from transpo... 211 6e-53
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 263 bits (671), Expect = 2e-68
Identities = 168/458 (36%), Positives = 260/458 (56%), Gaps = 30/458 (6%)
Query: 3 DIEKFTGSNDFGLWKVKMRAI---------LIQQKCVEALKGEAQMDVHLTPAEKT---E 50
++EK G D+ LWK K+ A L + + +E + A+ D LT E E
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 51 MNDKAVSAIILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVE 110
KA S +IL LG+ VLR+V +E TA M LD L+M KSL +R LKQ+LY Y+M +
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 111 SKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLE 170
S I E + +F K+I DL N+ V++ DED+A+ L +LP+ F+ KDT+ YGK T+ L+
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGK-TTLALD 185
Query: 171 EVQAALRTKELTKFKELK-VEDSGEGLNV-SRERSQNRGKGKGKNSRSKSRSKGDGNKTQ 228
E+ A+R+K L K +++S + L V R RS+ R K +N +S+SRSK K
Sbjct: 186 EITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERN-KSQSRSKSREKKV- 243
Query: 229 YKCFICHNPGHFKKDCP--ERKGNGGGNPSVQIASNEEGYES-AGALTV------TSWEP 279
C++C GHFKK C + K G N +SN G + A AL V + E
Sbjct: 244 --CWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVREESNADNQEV 301
Query: 280 EKGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLL 339
+ W++D+GCS+H+ PR+++F + + G V + N +I+ IG+IR++ D+ LL
Sbjct: 302 DNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDDNTTVLL 361
Query: 340 KDVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKIHGLYILEGSTVI 399
K+VRY+P + +NLIS+ + G + + G +++ G + + KG K+ LY+L+G V
Sbjct: 362 KNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVGTLYLLQGVVVT 421
Query: 400 ADASVASVDTLDVTKLWHLRLGHVSERGIWLN*LNKGC 437
+A+ A + D +K+WH RL H+S+R I + + KGC
Sbjct: 422 GNAN-AVTSSKDESKIWHSRLCHMSQRNIDVL-IKKGC 457
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 256 bits (655), Expect = 2e-66
Identities = 157/451 (34%), Positives = 254/451 (55%), Gaps = 30/451 (6%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKTEMNDKAVSAII 60
K+D+ F LW+VKMRA+L QQ+ +AL G + + EK + + KA+S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEK-KRDRKAMSYIH 63
Query: 61 LCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 120
L L + +L+EV +E TA + KL+ + MTK L + LKQ+L+ +++ + +M+ L+
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123
Query: 121 FNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTKE 180
F +I+ DL +++V +++D AL L C+LP S+ NF+DT+LY + T+TL+EV AL KE
Sbjct: 124 FKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSR-DTLTLKEVYDALHAKE 182
Query: 181 LTKFKELKVEDSGEGLNVSRERSQNRGKGKGKNSRSKSRSKGDGN-------KTQYK-CF 232
++K EG N E RG + KN+ +KSR K + + +YK C
Sbjct: 183 -----KMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCK 237
Query: 233 ICHNPGHFKKDC--PERKGNGGGNPSVQIASNEEGY------ESAGALTVTSW----EPE 280
C GH C + K G + EEG E + A + ++ +
Sbjct: 238 YCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS 297
Query: 281 KGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLK 340
W+LD+ C+YH+CP +++F E+ +GG V +G++ C++ IGT+++KMFD L
Sbjct: 298 DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 357
Query: 341 DVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGS-KIHGLYILEGSTVI 399
DVR+IP L+R+LIS+ D GY G+++++ G+L++ K S K LY L+G+T++
Sbjct: 358 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTIL 417
Query: 400 ADASVA--SVDTLDVTKLWHLRLGHVSERGI 428
+ + S+ D T LWH+RLGH+SE G+
Sbjct: 418 GNVATVSDSLSNSDATNLWHMRLGHMSEIGL 448
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 253 bits (645), Expect = 2e-65
Identities = 163/457 (35%), Positives = 255/457 (55%), Gaps = 41/457 (8%)
Query: 3 DIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKT------------- 49
++EKF G D+ +WK K+ A + ALK + +++
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 50 --EMNDKAVSAIILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYR 107
E KA SAI+L + D+VLR++ +ESTA +M LD LYM+K+L +R KQ+LY ++
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126
Query: 108 MVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTI 167
M E+ + + EF +II DL N++V + DED+A+ L ALP++F+ KDT+ Y +I
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSI 186
Query: 168 -TLEEVQAALRTKEL---TKFKELKVEDSGEGLNVSRERSQNRGKGKGKNSRSKSRSKGD 223
TL+EV AA+ +KEL + K +KV+ EGL V +++++N+GKG+ K K + K
Sbjct: 187 LTLDEVAAAIYSKELELGSVKKSIKVQ--AEGLYV-KDKNENKGKGEQKG---KGKGKKG 240
Query: 224 GNKTQYKCFICHNPGHFKKDCPER-----------KG-NGGGNPSVQIASNEEGYESAGA 271
+K + C+ C GHF+ CP + KG + GG ++ A+ GY + A
Sbjct: 241 KSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAA---GYYVSEA 297
Query: 272 LTVTSWEPEKGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKM 331
L+ T E W+LD+GCSYH+ ++E+F + GG V +GN +++ +GTIR+K
Sbjct: 298 LSSTEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKN 357
Query: 332 FDDRDFLLKDVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKIHGLY 391
D +L +VRYIP + RNL+S+ F+ GY E G++RI G ++ G + LY
Sbjct: 358 SDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTLY 417
Query: 392 ILEGSTVIADASVASVDTLDVTKLWHLRLGHVSERGI 428
+L V A S+A V D T LWH RL H+S++ +
Sbjct: 418 LLNWKPV-ASESLAVVKRADDTVLWHQRLCHMSQKNM 453
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 251 bits (642), Expect = 6e-65
Identities = 164/457 (35%), Positives = 248/457 (53%), Gaps = 38/457 (8%)
Query: 3 DIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKT------------- 49
++EKF G D+ LWK K+ A + +E L E + V + E +
Sbjct: 7 EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66
Query: 50 -------EMNDKAVSAIILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQ 102
E KA S IIL LG+ VLR+V ++ TA M LD L+M KSL +R LKQ+
Sbjct: 67 LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126
Query: 103 LYFYRMVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYG 162
LY Y+M E+ + E + +F K+I DL N+ V + DED+A+ L +LPR F+ K+T+ Y
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186
Query: 163 K*GTITLEEVQAALRTKELTKFKELK-VEDSGEGLNV-SRERSQNRGKGKGKNSRSKSRS 220
K T+ LEE+ +A+R+K L K ++++ +GL V R RS+ RGKG KN +S+S+S
Sbjct: 187 K-TTLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKN-KSRSKS 244
Query: 221 KGDGNKTQYKCFICHNPGHFKKDC---PERKGNGGGNPSVQIASNEEGYESAGALTVT-- 275
KG G C+IC GHFKK C ER G + + ++ A AL V+
Sbjct: 245 KGAGK----TCWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVSRA 300
Query: 276 ----SWEPEKGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKM 331
+ W+LD+GCS+H+ RK++ + G V +GN+ +++ IG +R+K
Sbjct: 301 LLGFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKN 360
Query: 332 FDDRDFLLKDVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKIHGLY 391
D LL DVRYIP++ +NLIS+ + G ++G++ I L + G K LY
Sbjct: 361 EDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLY 420
Query: 392 ILEGSTVIADASVASVDTLDVTKLWHLRLGHVSERGI 428
L+G+T+ +A+V + D T LWH RLGH+ +G+
Sbjct: 421 FLQGTTLAGEANVIDKEK-DETSLWHSRLGHIGAKGL 456
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 248 bits (632), Expect = 8e-64
Identities = 158/466 (33%), Positives = 254/466 (53%), Gaps = 48/466 (10%)
Query: 3 DIEKFTGSNDFGLWKVKM---------RAILIQQKCVEALKGEAQMDVHLTPAEKTEMND 53
++EKF G D+ +WK K+ A+L + + + +++ E+ +M
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEEREKMEA 66
Query: 54 ------KAVSAIILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYR 107
KA S I+L + D+VLR++ +E++A +M LD LYM+K+L +R LKQ+LY ++
Sbjct: 67 FEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFK 126
Query: 108 MVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTI 167
M E+ I + EF I+ DL N++V + DED+A+ L +LP+ F+ KDT+ Y T+
Sbjct: 127 MSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTV 186
Query: 168 -TLEEVQAALRTKELTKFKELK--VEDSGEGLNVSRERSQNRG----KGKGKNSRSKSRS 220
+L+EV AA+ ++EL +F +K ++ EGL V +++++NRG K KGK RSKS+S
Sbjct: 187 LSLDEVAAAIYSREL-EFGSVKKSIKGQAEGLYV-KDKAENRGRSEQKDKGKGKRSKSKS 244
Query: 221 KGDGNKTQYKCFICHNPGHFKKDCPER-----------KGNGGGNPSVQIASNEEGYESA 269
K C+IC GH K CP + KG G + + ESA
Sbjct: 245 KRG-------CWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVNFVESA 297
Query: 270 G-----ALTVTSWEPEKGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVI 324
G AL+ T E W++D+GC YH+ ++E+ E + E GG V +GN +++ +
Sbjct: 298 GMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISRVKGV 357
Query: 325 GTIRLKMFDDRDFLLKDVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKG 384
GT+R+ + L++VRYIP + RNL+S+ F+ G+ E G++RI G ++ +G
Sbjct: 358 GTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENGMLRIKSGNQVLLEG 417
Query: 385 SKIHGLYILEGSTVIADASVASVDTLDVTKLWHLRLGHVSERGIWL 430
+ LYIL G D S+A D T LWH RL H+S++ + L
Sbjct: 418 RRYDTLYILHGKPA-TDESLAVARANDDTVLWHRRLCHMSQKNMSL 462
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 246 bits (628), Expect = 2e-63
Identities = 150/451 (33%), Positives = 244/451 (53%), Gaps = 30/451 (6%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKTEMNDKAVSAII 60
K+D+ F LW+VKMRA+L QQ +AL G + + EK + + KA+S I
Sbjct: 40 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAMSYIH 98
Query: 61 LCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 120
L L + +L+EV +E TA + KL+ + MTK L + LKQ+L+ +++ + +M+ L+
Sbjct: 99 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158
Query: 121 FNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTKE 180
F +I+ DL +I+V ++ED L L C+LP S+ NF+DT+LY T+ L+EV AL KE
Sbjct: 159 FKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSH-DTLILKEVYDALHAKE 217
Query: 181 LTKFKELKVEDSGEGLNVSRERSQNRGKGKGKNSRSKSRSKGDG-------NKTQYK-CF 232
++K EG N E RG+ + KN++++SR K ++ +YK C
Sbjct: 218 -----KMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCK 272
Query: 233 ICHNPGHFKKDCPE------------RKGNGGGNPSVQIASNEEGYESAGALTVTSWEPE 280
C GH +C + KG + ++E+ +
Sbjct: 273 YCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTS 332
Query: 281 KGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLK 340
W+LD+ +YH+CP +++F E +GG V +G++ C++ IGT+++KMFD L
Sbjct: 333 DQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLS 392
Query: 341 DVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGS-KIHGLYILEGSTVI 399
DVR+IP L+R+LIS+ D GY G+++++ G+L++ K K LY L G+T++
Sbjct: 393 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 452
Query: 400 ADASVA--SVDTLDVTKLWHLRLGHVSERGI 428
+ + S+ D T LWH+RLGH+SE G+
Sbjct: 453 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 483
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 238 bits (606), Expect = 8e-61
Identities = 150/451 (33%), Positives = 247/451 (54%), Gaps = 30/451 (6%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKTEMNDKAVSAII 60
K+D+ F LW+VKMRA+L QQ +AL G + H ++ + + KA+S I
Sbjct: 212 KYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKR-THDWSNDEKKRDRKAMSYIH 270
Query: 61 LCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 120
L L + +L+EV +E A + KL+ + MTK L + LKQ L+ +++ + +M+ L+
Sbjct: 271 LHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSA 330
Query: 121 FNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTKE 180
F +II DL +++V ++ED L L C+LP S+ NF+DT+LY + T+TL+EV AL KE
Sbjct: 331 FKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSR-DTLTLKEVYDALHVKE 389
Query: 181 LTKFKELKVEDSGEGLNVSRERSQNRGKGKGKNSRSKSRSKGDGN-------KTQYK-CF 232
++K EG N E G+ + KN++++SR K + + +YK C
Sbjct: 390 -----KMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCK 444
Query: 233 ICHNPGHFKKDCPER--KGNGGGNPSVQIASNEEGY------ESAGALTVTSW----EPE 280
C GH +C + K G + EEG E + A + ++ +
Sbjct: 445 YCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS 504
Query: 281 KGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLK 340
W+L++ C YH+CP +++F E + G V +G++ C++ IGT+++KMFD L
Sbjct: 505 DQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 564
Query: 341 DVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGS-KIHGLYILEGSTVI 399
DVR+IP L+R+LIS+ D GY G+++++ G+L++ K K LY L G+T++
Sbjct: 565 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 624
Query: 400 ADASVA--SVDTLDVTKLWHLRLGHVSERGI 428
+ + S+ D T LWH+RLGH++E G+
Sbjct: 625 GNVAAVSDSLSNSDATNLWHMRLGHMTEIGL 655
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 237 bits (604), Expect = 1e-60
Identities = 153/452 (33%), Positives = 247/452 (53%), Gaps = 32/452 (7%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKTEMNDKAVSAII 60
K+D+ F LW+VKMRA+L QQ +AL G + + EK + + K +S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKTMSYIH 63
Query: 61 LCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 120
L L + +L+EV +E TA + KL+ + MTK L + LKQ+L+ +++ + +M+ L+
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123
Query: 121 FNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTKE 180
F KI+ DL +++V ++ED L L C+LP S+ NF+DT+LY T+TL+EV AL KE
Sbjct: 124 FKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRDTILYSC-DTLTLKEVYDALHAKE 182
Query: 181 LTKFKELKVEDSGEGLNVSRERSQNRGKGKGKNSRSKSRSKGDG-------NKTQYK-CF 232
++K EG N E RG+ + KN+ SKSR K ++ +YK C
Sbjct: 183 -----KIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSCK 237
Query: 233 ICHNPGHFKKDC--PERKGNGGGNPSVQIASNEEGY------ESAGALTVTSW----EPE 280
GH +C + K G + EEG E + A + ++ +
Sbjct: 238 YYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS 297
Query: 281 KGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLK 340
W+LD+ C+YH+C +++F E +GG V +G++ C++ + T+++KMFD L
Sbjct: 298 DQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLS 357
Query: 341 DVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGS-KIHGLYILEGSTVI 399
DVR+IP L+R+LIS+ D Y G+++++ G+L++ K K LY + G+T++
Sbjct: 358 DVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSANLYHVRGTTIL 417
Query: 400 ADASVASVDTL---DVTKLWHLRLGHVSERGI 428
+ + S D+L D T LWH+RLGH+SE G+
Sbjct: 418 GNIAAVS-DSLYNSDATNLWHMRLGHMSEIGL 448
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 235 bits (600), Expect = 4e-60
Identities = 158/446 (35%), Positives = 247/446 (54%), Gaps = 41/446 (9%)
Query: 3 DIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQM-----DVHLTPAEKTE------- 50
++EKF G D+ +WK K+ A L ALK E + ++ LT E+ E
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 51 ---MNDKAVSAIILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYR 107
KA SAI+L + D+VLR++ +E +A +M LD LYM+K+L +R KQ+LY ++
Sbjct: 67 LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126
Query: 108 MVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*G-T 166
M E+ I + EF +II DL N +V + DED+A+ L +LP+ F+ +DT+ YG T
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVT 186
Query: 167 ITLEEVQAALRTKELTKFKELK-VEDSGEGLNVSRERSQNRGKGK---GKNSRSKSRSKG 222
++L+EV AA+ +KEL K ++ EGL V +E+++ RG+ + N+ KSRSK
Sbjct: 187 LSLDEVVAAIYSKELELGSNKKSIKGQAEGLFV-KEKTETRGRTEQRGNNNNNKKSRSK- 244
Query: 223 DGNKTQYKCFICHNPGHFKKDCPERKGNGGGNPSVQIASNEEGYESAGALTVTSWEPEKG 282
++++ C+IC NG N S G + AL+ T E
Sbjct: 245 --SRSKKGCWIC-----------GESSNGSSN-----YSEANGLYVSEALSSTDIHLEDE 286
Query: 283 WVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDV 342
WV+D+GCSYH+ ++E+FE L + GG V +GN K++ IGTIR+K L +V
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNV 346
Query: 343 RYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKIHGLYILEGSTVIADA 402
RYIP++ RNL+S+ F+ GY ++E G + I G ++ + + LY+L+ V +
Sbjct: 347 RYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPV-TEE 405
Query: 403 SVASVDTLDVTKLWHLRLGHVSERGI 428
S++ V D T LWH RLGH+S++ +
Sbjct: 406 SLSVVKRQDDTILWHRRLGHMSQKNM 431
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1373
Score = 232 bits (592), Expect = 3e-59
Identities = 165/457 (36%), Positives = 243/457 (53%), Gaps = 26/457 (5%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCV-EALKGEAQMDVHLTPAEKTEMNDKAVSAI 59
K+D+ F LW+VKMR IL Q EAL + T AE+ + KA++ I
Sbjct: 2 KFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWT-AEEIRKDQKALALI 60
Query: 60 ILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 119
L L + +L+E E T+ + KL+S+ M+K L + +K +L+ +M E ++ +
Sbjct: 61 QLHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMA 120
Query: 120 EFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTK 179
EF KI+ DL +++V +DED L L C+LP S+ NF+DT+L + +TL+EV AL+ K
Sbjct: 121 EFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-DELTLKEVYDALQNK 179
Query: 180 ELTKF---KELKVEDSGEGLNVSRERSQNR-GKGKGKNSRSKSRSKGDGNKTQYKCFIC- 234
E K + GE L+V R R++NR K + R +S+SK GNK C C
Sbjct: 180 EKMKIMVQNDGSSSSKGEALHV-RGRTENRTSNEKNYDRRGRSKSKPPGNKK--FCVYCK 236
Query: 235 ---HNPGHFKK-DCPERKGNGGGNPSVQIASNEEGYESAGALTVTSW--EPEKGWVLDSG 288
HN KK ERK G SV A+ + +S L V + W+LDS
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDD-DSGDCLVVFAGCVAGHDEWILDSA 295
Query: 289 CSYHICPRKEYFEMLE-LEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDVRYIPK 347
CS+HIC ++ +F + +++G VV +G++ C I IG++++K D LK+VRYIP
Sbjct: 296 CSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPG 355
Query: 348 LRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGS-KIHGLYILEGSTVIADASVAS 406
+ RNLIS+S D GY GV+++S G+L+ KG LY+L G T+ S A+
Sbjct: 356 MSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAA 415
Query: 407 VDTLD---VTKLWHLRLGHVSERG---IWLN*LNKGC 437
T D T LWH+RLGH+S G + L KGC
Sbjct: 416 AITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGC 452
>ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sativa]
gi|14029020|gb|AAK52561.1| Putative retroelement pol
polyprotein [Oryza sativa]
Length = 1326
Score = 231 bits (590), Expect = 6e-59
Identities = 156/448 (34%), Positives = 245/448 (53%), Gaps = 31/448 (6%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCV-EALKGEAQMDVHLTPAEKTEMNDKAVSAI 59
K+D+ F LW+VKMRAIL Q + EAL+ + AE+ + KA+ I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLI 64
Query: 60 ILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 119
L L + +L+EV +E TA + KL+S+ M+K L + +K +L+ +++ ES ++ ++
Sbjct: 65 QLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 124
Query: 120 EFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTK 179
F +I+ DL +I+V +DED L L C+LP S+ NF+DT+L + +TL EV AL+ +
Sbjct: 125 VFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSR-DELTLAEVYEALQNR 183
Query: 180 ELTKFKELKVEDS----GEGLNV---SRERSQNRGKGKGKNSRSKSRSKGDGNKTQYKCF 232
E K K + D+ GE L V S +R+ N + K S+S+ RSK G K C
Sbjct: 184 E--KMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDK-SQSRGRSKSRGKKF---CK 237
Query: 233 ICHNPGHFKKDC------PERKGNGGGNPSVQIASNEEGYESAGALTVTSW--EPEKGWV 284
C HF ++C +RK +G + ++ E +S L V + W+
Sbjct: 238 YCKKKNHFIEECWKLQNKEKRKSDG----KASVVTSAENSDSGDCLVVFAGCVASHDEWI 293
Query: 285 LDSGCSYHICPRKEYFEMLE-LEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDVR 343
LD+ CS+HIC +++F + ++ G VV +G++ +I IG++++K D LKDVR
Sbjct: 294 LDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVR 353
Query: 344 YIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGS-KIHGLYILEGSTVIADA 402
+IP + RNLIS+S D GY GV+++S G+L+ G LY+L GST+
Sbjct: 354 HIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSV 413
Query: 403 SVASV--DTLDVTKLWHLRLGHVSERGI 428
+ A+V D T LWH+RLGH+SE G+
Sbjct: 414 TAAAVSKDEPIKTNLWHMRLGHMSELGM 441
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 230 bits (586), Expect = 2e-58
Identities = 159/449 (35%), Positives = 234/449 (51%), Gaps = 37/449 (8%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKTEMNDKAVSAII 60
K+++ KF G N F W+ +MR +LIQQ + L +++ + + +++++A SAI
Sbjct: 5 KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64
Query: 61 LCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 120
L L D V+ + E TA + +L+SLYM+K+L ++ LK+QLY M E + L
Sbjct: 65 LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124
Query: 121 FNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTKE 180
FN +I LAN+ V +E+EDKA+ L +LP S++N T+L+GK TI L++V +AL E
Sbjct: 125 FNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGK-TTIELKDVTSALLLNE 183
Query: 181 LTKFKELKVEDSG-----EGLNVSRERSQNRGKGKGKNSRSKSRSKGDGNKTQYKCFICH 235
+ K E+ G EG S +RS N G +SK+RSK C+ C+
Sbjct: 184 KMR---KKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSK----SRVRNCYNCN 236
Query: 236 NPGHFKKDCPE-RKGNG---------------GGNPSVQIASNEEGYESAGALTVTSWEP 279
PGHFK+DCP RKG G N +V + NEE E L+ P
Sbjct: 237 QPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEE--EECMHLS----GP 290
Query: 280 EKGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLL 339
E WV+D+ S+H P ++ F + G V +GN KI IG I +K +L
Sbjct: 291 ESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVL 350
Query: 340 KDVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKIHGLYILEGSTVI 399
KDVR++P LR NLIS D GY + R++ G+L+IAKG LY
Sbjct: 351 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQ 410
Query: 400 ADASVASVDTLDVTKLWHLRLGHVSERGI 428
+ + A D + V LWH R+GH+SE+G+
Sbjct: 411 GELNAAQ-DEISV-DLWHKRMGHMSEKGL 437
>emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
gi|4539406|emb|CAB40039.1| putative retrotransposon
[Arabidopsis thaliana] gi|7444416|pir||T04181
hypothetical protein F7L13.40 - Arabidopsis thaliana
Length = 1230
Score = 229 bits (585), Expect = 2e-58
Identities = 155/457 (33%), Positives = 232/457 (49%), Gaps = 57/457 (12%)
Query: 3 DIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEK-------------T 49
++EKF G D+ LWK K+ A + AL+ + L E+
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 50 EMNDKAVSAIILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMV 109
E KA S I+L + D+VLR+ +E TA SM LD LYM+K+L +R LKQ+LY Y+M
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126
Query: 110 ESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK-*GTIT 168
E+ + + EF ++I DL N +V + DED+A+ L +LP+ F+ KDT+ YG T++
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLS 186
Query: 169 LEEVQAALRTKELTKFKELK-VEDSGEGLNVSRERSQNRG----KGKGKNSRSKSRSKGD 223
++EV AA+ +KEL K + EGL V +++ + RG K KG RS+SRSKG
Sbjct: 187 VDEVVAAIYSKELELGSNKKSIRGQAEGLYV-KDKPETRGMSEQKEKGNKGRSRSRSKG- 244
Query: 224 GNKTQYKCFICHNPGHFKKDCPER---------KGNGGGNPSVQIASNE---EGYESAGA 271
C+IC GHFK CP + + +G + I N GY + A
Sbjct: 245 ----WKGCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYVSEA 300
Query: 272 LTVTSWEPEKGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKM 331
L T WV+D+GC+YH+ +KE+FE L + GG V +GN K +
Sbjct: 301 LHSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSEDAGGTVRMGNKSTSKFR--------- 351
Query: 332 FDDRDFLLKDVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKIHGLY 391
V+YIP + RNL+S+ + GY + GV+ + G + GS+ LY
Sbjct: 352 ----------VKYIPDMDRNLLSMGTLEEHGYSFESKNGVLVVKEGTRTLLIGSRHEKLY 401
Query: 392 ILEGSTVIADASVASVDTLDVTKLWHLRLGHVSERGI 428
+L+G ++ S+ D T LWH RLGH+S++ +
Sbjct: 402 LLQGKPEVSH-SMTVERRNDDTVLWHRRLGHISQKNM 437
>ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa (japonica
cultivar-group)] gi|40538906|gb|AAR87163.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1322
Score = 225 bits (573), Expect = 6e-57
Identities = 150/446 (33%), Positives = 240/446 (53%), Gaps = 27/446 (6%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCV-EALKGEAQMDVHLTPAEKTEMNDKAVSAI 59
K+D+ F LW+VKMRA+L Q + EAL+ + AE+ + KA+S I
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64
Query: 60 ILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 119
L L + +L+EV ++ TA + KL+S+ M+K L + +K +L+ +++ ES ++ ++
Sbjct: 65 QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124
Query: 120 EFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTK 179
F +I+ DL +++V +DED L L C+LP S+ NF+ T+L + +TL EV AL+ +
Sbjct: 125 VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSR-DELTLAEVYEALQNR 183
Query: 180 ELTK--FKELKVEDSGEGLNV---SRERSQNRGKGKGKNSRSKSRSKGDGNKTQYKCFIC 234
E K + GE L V S +R+ N K S+S+ RSK G K C C
Sbjct: 184 EKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDK-SQSRGRSKSRGKKF---CKYC 239
Query: 235 HNPGHFKKDC------PERKGNGGGNPSVQIASNEEGYESAGALTVTSW--EPEKGWVLD 286
HF ++C +RK +G + ++ E +S L V + W+LD
Sbjct: 240 KKKNHFIEECWKLQNKEKRKSDG----KASVVTSAENSDSGDCLVVFAGYVASHDEWILD 295
Query: 287 SGCSYHICPRKEYFEMLE-LEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDVRYI 345
+ CS+HIC +++F + ++ VV +G++ +I IG++++K D LKDVR+I
Sbjct: 296 TACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHI 355
Query: 346 PKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGS-KIHGLYILEGSTVIADASV 404
P + RNLIS+S D GY GV+++S G+L+ G LY+L GST+ +
Sbjct: 356 PGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTA 415
Query: 405 ASV--DTLDVTKLWHLRLGHVSERGI 428
A+V D T LWH+RLGH+SE G+
Sbjct: 416 AAVTKDEPSKTNLWHMRLGHMSELGM 441
>gb|AAP53029.1| putative retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|37532880|ref|NP_920742.1| putative
retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|16905223|gb|AAL31093.1| putative
retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 222 bits (566), Expect = 4e-56
Identities = 152/448 (33%), Positives = 242/448 (53%), Gaps = 31/448 (6%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCV-EALKGEAQMDVHLTPAEKTEMNDKAVSAI 59
K+D+ F LW+VKMRA+L Q + EAL+ + AE+ + KA+S I
Sbjct: 2 KYDLPLQDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 61
Query: 60 ILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 119
L L + +L++V +E TA + KL+S+ M+K L + +K +L+ +++ ES ++ ++
Sbjct: 62 QLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 121
Query: 120 EFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTK 179
F +II DL +++V +DED L L C+LP + NF+DT+L + +TL EV AL+ +
Sbjct: 122 VFKEIIADLVSMEVQFDDEDLGLLLLCSLPSLYANFRDTILLSR-DELTLAEVYEALQNR 180
Query: 180 ELTKFKELKVEDS----GEGLNV---SRERSQNRGKGKGKNSRSKSRSKGDGNKTQYKCF 232
E K K + D+ G+ L V S +R+ N + K S+S+ RSK G K C
Sbjct: 181 E--KMKGMVQSDASSSKGKALQVRGRSEQRTYNDSNDRDK-SQSRGRSKSRGKKF---CK 234
Query: 233 ICHNPGHFKKDC------PERKGNGGGNPSVQIASNEEGYESAGALTVTSW--EPEKGWV 284
C HF ++C +RK +G + ++ E +SA L + W+
Sbjct: 235 YCKKKNHFIEECWKLQNKEKRKSDG----KASVVTSAENSDSADCLVFFAGCVASHDEWI 290
Query: 285 LDSGCSYHICPRKEYFEM-LELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDVR 343
LD+ C + IC +++F ++ G VV +G+N +I IG++++K D LKDVR
Sbjct: 291 LDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVR 350
Query: 344 YIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGS-KIHGLYILEGSTVIADA 402
+IP + RNLIS+S D GY GV+++S G+L+ G LY+L GST+
Sbjct: 351 HIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSL 410
Query: 403 SVASV--DTLDVTKLWHLRLGHVSERGI 428
+ A+V D T LWH+RLGH+SE G+
Sbjct: 411 TAAAVSKDEPSKTNLWHMRLGHMSELGM 438
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 219 bits (559), Expect = 2e-55
Identities = 155/442 (35%), Positives = 242/442 (54%), Gaps = 31/442 (7%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEK-TEMNDKAVSAI 59
K++IEKF G N F LWK+K++AIL + C+ A+ ++ V T +K +EMN+ A++ +
Sbjct: 4 KFEIEKFNGKN-FSLWKLKVKAILRKDNCLAAI---SERPVDFTDDKKWSEMNEDAMADL 59
Query: 60 ILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 119
L + D VL + + TA + + L+ LY KSL ++ LK++LY RM ES + E L
Sbjct: 60 YLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLN 119
Query: 120 EFNKIIDDLANIDVNLEDEDKALHLPCALPRSFE----NFKDTMLYGK*GTITLEEVQAA 175
N + L ++ +E +++A L +LP S++ N + +L + ++V AA
Sbjct: 120 TLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDY---LVFDDVAAA 176
Query: 176 LRTKELT-KFKELKVED--SGEGLNVSRERSQNRGKGKGKNSRSKSRSKGDGNKTQYKCF 232
+ +E K KE + + E L V R RS RG+ G+ RSKS +K C+
Sbjct: 177 VLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRG-RSKS------SKKNLTCY 229
Query: 233 ICHNPGHFKKDCPERKGNGGGNPSVQIASNEEGYESAGALTVTSWEPEKG----WVLDSG 288
C GH KKDC N NP +AS + + + E K W++DSG
Sbjct: 230 NCGKKGHLKKDCWNLAQNS--NPQGNVASTSDDGSALCCEASIAREGRKRFADIWLIDSG 287
Query: 289 CSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDVRYIPKL 348
+YH+ RKE+F E GG V ++ A +I IGTI+LKM+D ++DVR++ L
Sbjct: 288 ATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGL 347
Query: 349 RRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKI-HGLYILEGSTV-IADASVAS 406
++NL+S + D ++GVM+I GAL++ KG KI LY+L+G T+ A+ASVA+
Sbjct: 348 KKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEAEASVAA 407
Query: 407 VDTLDVTKLWHLRLGHVSERGI 428
D T LWH +LGH+S++G+
Sbjct: 408 CSP-DSTLLWHQKLGHMSDQGM 428
>ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475213|gb|AAT44282.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1243
Score = 214 bits (546), Expect = 8e-54
Identities = 139/439 (31%), Positives = 238/439 (53%), Gaps = 34/439 (7%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKTEMNDKAVSAII 60
K+D+ F LW+VKMRA+L QQ +AL G + + EK + + KA+S I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKAISYIH 63
Query: 61 LCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 120
L L + +L+EV +E TA + KL+ + MTK L + LKQ+L+ +++ + + +M+ L+
Sbjct: 64 LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSA 123
Query: 121 FNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTKE 180
F +I+ DL +++V +++D L L C+LP S+ NF+ T+LY + T+TL+EV A KE
Sbjct: 124 FKEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSR-DTLTLKEVYDAFHAKE 182
Query: 181 LTKFKELKVEDSGEGLNVSRERSQNRGKGKGKNSRSKSRSKGDG-------NKTQYK-CF 232
++K + EG N E RG+ + KN++++SR K ++ +YK C
Sbjct: 183 -----KMKKMVTSEGSNSQAEGLVVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYKSCK 237
Query: 233 ICHNPGHFKKDCPERKGNGGGNPSVQIASNEEGYESAGALTVTSWEPEKGWVLDSGCSYH 292
C GH +C + + + I ++ E A+ + V +GC+
Sbjct: 238 YCKRDGHDISECWKLQ-DKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ- 295
Query: 293 ICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDVRYIPKLRRNL 352
+++F E +GG V +G++ C++ IGT+++KMFD L DV++IP L+R+L
Sbjct: 296 -TSDQDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSL 354
Query: 353 ISISMFDGLGYCTRIERGVMRISHGALIIAK-GSKIHGLYILEGSTVIADASVA--SVDT 409
IS+ G+++++ G+L++ K K LY L G+T++ + + S+
Sbjct: 355 ISL-------------YGILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSN 401
Query: 410 LDVTKLWHLRLGHVSERGI 428
D T LWH+RLGH+SE G+
Sbjct: 402 SDATNLWHMRLGHMSEIGL 420
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301697|pir||B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1335
Score = 214 bits (545), Expect = 1e-53
Identities = 135/404 (33%), Positives = 213/404 (52%), Gaps = 22/404 (5%)
Query: 48 KTEMNDKAVSAIILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYR 107
+ E DKA + I L + DKVLR++ TA LD L+M +SL HR + Y ++
Sbjct: 42 RLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFYTFK 101
Query: 108 MVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GT- 166
M E+K I E + +F KI+ DL ++ +++ DE +A+ L +LP ++ +TM Y
Sbjct: 102 MQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSREK 161
Query: 167 ITLEEVQAALRTKELTKFKELKVEDSGEGLNVSRERSQNRGKGKGKNSRSKSRSKG-DGN 225
+ L++V A R KE + + G + +R R + +G +++SRSK DG
Sbjct: 162 LRLDDVMVAARDKERELSQNNRPVVEG---HFARGRPDGKNNNQGNKGKNRSRSKSADGK 218
Query: 226 KTQYKCFICHNPGHFKKDC------PERKGNGGGNPSVQIASNEEGYESAGALTVTSW-- 277
+ C+IC GHFKK C + K G N +A + E + A L T
Sbjct: 219 RV---CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETL 275
Query: 278 ----EPEKGWVLDSGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFD 333
WVLD+GCS+H+ PRK++F+ + G V +GN+ ++ IG+I+++ D
Sbjct: 276 VVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSD 335
Query: 334 DRDFLLKDVRYIPKLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKIHGLYIL 393
+L DVRY+P + RNLIS+ + G + + G+++I G I KG K LYIL
Sbjct: 336 GSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYIL 395
Query: 394 EGSTVIADASVASVDTLDVTKLWHLRLGHVSERGIWLN*LNKGC 437
+G T + S +S + D T LWH RLGH+S++G+ + + KGC
Sbjct: 396 DGVTEEGE-SHSSAEVKDETALWHSRLGHMSQKGMEIL-VKKGC 437
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 214 bits (545), Expect = 1e-53
Identities = 146/442 (33%), Positives = 224/442 (50%), Gaps = 22/442 (4%)
Query: 1 KWDIEKFTGSND-FGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKTEMNDKAVSAI 59
K+++ KF G F +W+ +M+ +LIQQ +AL G+++ + + E+++KA SAI
Sbjct: 5 KYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAASAI 64
Query: 60 ILCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 119
L L D V+ + E +A + KL++LYM+K+L ++ LK+QLY M E + L
Sbjct: 65 RLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLN 124
Query: 120 EFNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTK 179
N +I LAN+ V +E+EDK + L +LP S++ T+L+GK +I L++V +AL
Sbjct: 125 VLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGK-DSIQLKDVTSALLLN 183
Query: 180 ELTKFKELKVEDSGE-GLNVSRERSQNRGKGKGKNSRSKSRSKGDGNKTQYKCFICHNPG 238
E + K E+ G+ + SR RS R S ++ +SK C+ C PG
Sbjct: 184 EKMR---KKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQPG 240
Query: 239 HFKKDCPERKGNGG--------GNPSVQIASNEEGY----ESAGALTVTSWEPEKGWVLD 286
HFK+DCP K G N + + +N++ E + + E E WV+D
Sbjct: 241 HFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTESE--WVVD 298
Query: 287 SGCSYHICPRKEYFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDVRYIP 346
+ SYH P ++ F + G V +GN KI IG I K +LKDVR++P
Sbjct: 299 TAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDVRHVP 358
Query: 347 KLRRNLISISMFDGLGYCTRIERGVMRISHGALIIAKGSKIHGLYILEGSTVIADASVAS 406
LR NLIS D GY R++ GAL+IAKG LY + I + +
Sbjct: 359 DLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLY--RTNAEICQGELNA 416
Query: 407 VDTLDVTKLWHLRLGHVSERGI 428
+ LWH R+GH SE+G+
Sbjct: 417 AHEENSADLWHKRMGHTSEKGL 438
>ref|NP_916849.1| retrovirus-related pol polyprotein from transposon TNT 1-94-like
[Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 211 bits (538), Expect = 6e-53
Identities = 133/403 (33%), Positives = 218/403 (54%), Gaps = 21/403 (5%)
Query: 1 KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMDVHLTPAEKTEMNDKAVSAII 60
K+++ KF G+ +F LW+++++ +L QQ +AL E M + + EM +A + I
Sbjct: 8 KFEMVKFDGTGNFVLWQMRLKDLLAQQGISKAL--EETMPEKMDAGKWEEMKAQAAATIR 65
Query: 61 LCLGDKVLREVSRESTAVSMRNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 120
L L D V+ +V E T + +KL SLYM+KSL + LKQQLY +M E + + +
Sbjct: 66 LSLSDSVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDV 125
Query: 121 FNKIIDDLANIDVNLEDEDKALHLPCALPRSFENFKDTMLYGK*GTITLEEVQAALRTKE 180
FN+++ DL+ +DVNL DEDKA+ L C+LP S+E+ T+ +GK TI EE+ ++L ++
Sbjct: 126 FNQLVVDLSKLDVNLYDEDKAIILLCSLPPSYEHVVTTLTHGK-DTIKTEEIISSLLARD 184
Query: 181 LTKFK--ELKVEDSGEGLNVSRERSQNRGKGKGKNSRSKSRSKGDGNKTQYKCFICHNPG 238
L + K E E L V + G SKS KG +C+ CH G
Sbjct: 185 LRRSKKNEAMEASQAESLLVKAKHDHEAGV-------SKSNEKG------ARCYKCHEFG 231
Query: 239 HFKKDCPERKGNGGGNPSVQIASNEEGYESAGALTVTSWEPEKGWVLDSGCSYHICPRKE 298
H +++CP K G S+ ++ S LTV++ + + W+LDS SYH+ ++E
Sbjct: 232 HIRRNCPLLKKRKDGIASLAARGDDSDSSSHEILTVSNEKSGEAWMLDSASSYHVTSKRE 291
Query: 299 YFEMLELEEGGVVCLGNNKACKIQVIGTIRLKMFDDRDFLLKDVRYIPKLRRNLISISMF 358
+F + + GVV LG++ + + + ++ KM+D + LL DVR++P LR++LIS+
Sbjct: 292 WFFSYKSGDFGVVYLGDDTSYHVVGVDDVKFKMYDGNEVLLSDVRHVPGLRKSLISLGSL 351
Query: 359 DGLGYCTRI--ERGVMRISHGALIIAKGSKIHG-LYILEGSTV 398
G+ ++ +R M I + G + LY L+G+ V
Sbjct: 352 HETGWLYQVDFDRKTMNIMKDGKTVMTGERTSSCLYKLQGNAV 394
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.344 0.151 0.505
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,280,109,185
Number of Sequences: 2540612
Number of extensions: 49254429
Number of successful extensions: 230256
Number of sequences better than 10.0: 873
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 425
Number of HSP's that attempted gapping in prelim test: 227754
Number of HSP's gapped (non-prelim): 1563
length of query: 866
length of database: 863,360,394
effective HSP length: 137
effective length of query: 729
effective length of database: 515,296,550
effective search space: 375651184950
effective search space used: 375651184950
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 80 (35.4 bits)
Medicago: description of AC144730.2