BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144728.10 + phase: 0 /pseudo
(1006 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S65668 preprotein translocase secA precursor - garden pea 352 4e-95
emb|CAA57798.1| chloroplast SecA protein [Pisum sativum] gi|2500... 352 4e-95
emb|CAB77750.1| putative SecA-type chloroplast protein transport... 265 6e-69
ref|NP_192089.1| preprotein translocase secA subunit, putative [... 265 6e-69
ref|NP_908668.1| putative SecA-type chloroplast protein transpor... 245 5e-63
dbj|BAD44978.1| putative SecA [Oryza sativa (japonica cultivar-g... 245 5e-63
emb|CAA88933.1| SecA [Spinacia oleracea] gi|2500725|sp|Q36795|SE... 240 2e-61
pir||A57386 preprotein translocase secA precursor - spinach 240 2e-61
pir||T04122 preprotein translocase secA homolog tha1, chloroplas... 201 8e-50
emb|CAD84719.1| SecA protein:SEC-C motif [Nitrosomonas europaea ... 195 7e-48
ref|NP_682641.1| preprotein translocase subunit [Thermosynechoco... 192 4e-47
emb|CAA12257.1| preprotein translocase [Phormidium laminosum] 192 6e-47
ref|NP_953099.1| preprotein translocase, SecA subunit [Geobacter... 190 2e-46
ref|ZP_00330300.1| COG0653: Preprotein translocase subunit SecA ... 188 9e-46
ref|YP_157807.1| preprotein translocase SecA [Azoarcus sp. EbN1]... 187 2e-45
dbj|BAB76550.1| preprotein translocase SecA subunit [Nostoc sp. ... 186 4e-45
ref|ZP_00160528.1| COG0653: Preprotein translocase subunit SecA ... 186 4e-45
ref|ZP_00334851.1| COG0653: Preprotein translocase subunit SecA ... 185 8e-45
ref|ZP_00211587.1| COG0653: Preprotein translocase subunit SecA ... 184 1e-44
emb|CAE34553.1| preprotein translocase secA subunit [Bordetella ... 184 1e-44
>pir||S65668 preprotein translocase secA precursor - garden pea
Length = 1011
Score = 352 bits (903), Expect = 4e-95
Identities = 188/218 (86%), Positives = 192/218 (87%), Gaps = 3/218 (1%)
Query: 1 MAASSLCSSFTSTTSHSQHRLHHRKTLNLPGSSFLSREFHLNSASVSKTRRSRSRRSGSV 60
MA SSLCSSFTS T + H HRKTL LPGS FL R+FHLNS SVSKTRR R+R+SG V
Sbjct: 1 MATSSLCSSFTSQTCNP-HSRPHRKTLTLPGSVFLCRQFHLNSPSVSKTRRIRTRQSGPV 59
Query: 61 AVASLGGLLGGIFKGNDTGEATRKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQ 120
A SLGGLLGGIFKG DTGEATRKQYAA VN INGLE IS LSDSELRD TF RERAQ
Sbjct: 60 A--SLGGLLGGIFKGTDTGEATRKQYAAIVNTINGLEPKISALSDSELRDMTFASRERAQ 117
Query: 121 KRESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILP 180
K ESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILP
Sbjct: 118 KGESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILP 177
Query: 181 AYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 218
AYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK
Sbjct: 178 AYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 215
>emb|CAA57798.1| chloroplast SecA protein [Pisum sativum]
gi|2500724|sp|Q41062|SECA_PEA Preprotein translocase
secA subunit, chloroplast precursor
Length = 1011
Score = 352 bits (903), Expect = 4e-95
Identities = 188/218 (86%), Positives = 192/218 (87%), Gaps = 3/218 (1%)
Query: 1 MAASSLCSSFTSTTSHSQHRLHHRKTLNLPGSSFLSREFHLNSASVSKTRRSRSRRSGSV 60
MA SSLCSSFTS T + H HRKTL LPGS FL R+FHLNS SVSKTRR R+R+SG V
Sbjct: 1 MATSSLCSSFTSQTCNP-HSRPHRKTLTLPGSVFLCRQFHLNSPSVSKTRRIRTRQSGPV 59
Query: 61 AVASLGGLLGGIFKGNDTGEATRKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQ 120
A SLGGLLGGIFKG DTGEATRKQYAA VN INGLE IS LSDSELRD TF RERAQ
Sbjct: 60 A--SLGGLLGGIFKGTDTGEATRKQYAAIVNTINGLEPKISALSDSELRDMTFASRERAQ 117
Query: 121 KRESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILP 180
K ESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILP
Sbjct: 118 KGESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILP 177
Query: 181 AYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 218
AYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK
Sbjct: 178 AYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 215
>emb|CAB77750.1| putative SecA-type chloroplast protein transport factor
[Arabidopsis thaliana] gi|4558549|gb|AAD22642.1|
putative SecA-type chloroplast protein transport factor
[Arabidopsis thaliana] gi|25298335|pir||B85023
hypothetical protein AT4g01800 [imported] - Arabidopsis
thaliana gi|17369638|sp|Q9SYI0|SECA_ARATH Preprotein
translocase secA subunit, chloroplast precursor
Length = 1021
Score = 265 bits (677), Expect = 6e-69
Identities = 143/196 (72%), Positives = 160/196 (80%), Gaps = 2/196 (1%)
Query: 24 RKTLNLPGSSFLSREFHLNSASVSKTRRSRSRRSGSVAV-ASLGGLLGGIFKGNDTGEAT 82
R+ L SSF +F N+ + + S R S +V ASLGGLL GIFKG+D GE+T
Sbjct: 33 RQNRLLSSSSFWGTKFG-NTVKLGVSGCSSCSRKRSTSVNASLGGLLSGIFKGSDNGEST 91
Query: 83 RKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKR 142
R+QYA+ V +N LE IS LSDSELR++T L++RAQK ES+DSLLPEAFAVVREASKR
Sbjct: 92 RQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKR 151
Query: 143 VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLAR 202
VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNAL GKGVHVVTVNDYLAR
Sbjct: 152 VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLAR 211
Query: 203 RDCEWVGQVPRFLGMK 218
RDCEWVGQVPRFLG+K
Sbjct: 212 RDCEWVGQVPRFLGLK 227
>ref|NP_192089.1| preprotein translocase secA subunit, putative [Arabidopsis
thaliana]
Length = 1022
Score = 265 bits (677), Expect = 6e-69
Identities = 143/196 (72%), Positives = 160/196 (80%), Gaps = 2/196 (1%)
Query: 24 RKTLNLPGSSFLSREFHLNSASVSKTRRSRSRRSGSVAV-ASLGGLLGGIFKGNDTGEAT 82
R+ L SSF +F N+ + + S R S +V ASLGGLL GIFKG+D GE+T
Sbjct: 33 RQNRLLSSSSFWGTKFG-NTVKLGVSGCSSCSRKRSTSVNASLGGLLSGIFKGSDNGEST 91
Query: 83 RKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKR 142
R+QYA+ V +N LE IS LSDSELR++T L++RAQK ES+DSLLPEAFAVVREASKR
Sbjct: 92 RQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKR 151
Query: 143 VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLAR 202
VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNAL GKGVHVVTVNDYLAR
Sbjct: 152 VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLAR 211
Query: 203 RDCEWVGQVPRFLGMK 218
RDCEWVGQVPRFLG+K
Sbjct: 212 RDCEWVGQVPRFLGLK 227
>ref|NP_908668.1| putative SecA-type chloroplast protein transport factor [Oryza
sativa (japonica cultivar-group)]
Length = 1015
Score = 245 bits (626), Expect = 5e-63
Identities = 129/176 (73%), Positives = 148/176 (83%), Gaps = 5/176 (2%)
Query: 48 KTRRSRSRRSGSVAVAS---LGGLLGGIF--KGNDTGEATRKQYAATVNVINGLEANISK 102
++ R+ RR G VA+ LGGLLGG+F G D G+A RK+YA TV +N +E +S
Sbjct: 54 RSLRAPRRRGGGDRVAARAGLGGLLGGMFGGAGGDDGDAARKRYADTVARVNSMEPEVSA 113
Query: 103 LSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG 162
LSD++LR +T +L+ERA+ ESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG
Sbjct: 114 LSDADLRARTAKLQERARAGESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG 173
Query: 163 EIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 218
EIAEM+TGEGKTLVAILPAYLNAL GKGVHVVTVNDYLARRDCEWVGQVPRFLG++
Sbjct: 174 EIAEMKTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLQ 229
>dbj|BAD44978.1| putative SecA [Oryza sativa (japonica cultivar-group)]
Length = 1021
Score = 245 bits (626), Expect = 5e-63
Identities = 129/176 (73%), Positives = 148/176 (83%), Gaps = 5/176 (2%)
Query: 48 KTRRSRSRRSGSVAVAS---LGGLLGGIF--KGNDTGEATRKQYAATVNVINGLEANISK 102
++ R+ RR G VA+ LGGLLGG+F G D G+A RK+YA TV +N +E +S
Sbjct: 54 RSLRAPRRRGGGDRVAARAGLGGLLGGMFGGAGGDDGDAARKRYADTVARVNSMEPEVSA 113
Query: 103 LSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG 162
LSD++LR +T +L+ERA+ ESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG
Sbjct: 114 LSDADLRARTAKLQERARAGESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG 173
Query: 163 EIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 218
EIAEM+TGEGKTLVAILPAYLNAL GKGVHVVTVNDYLARRDCEWVGQVPRFLG++
Sbjct: 174 EIAEMKTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLQ 229
>emb|CAA88933.1| SecA [Spinacia oleracea] gi|2500725|sp|Q36795|SECA_SPIOL Preprotein
translocase secA subunit, chloroplast precursor
Length = 1036
Score = 240 bits (612), Expect = 2e-61
Identities = 129/176 (73%), Positives = 144/176 (81%), Gaps = 8/176 (4%)
Query: 51 RSRSRRSGS---VAVASLGGLL--GGI---FKGNDTGEATRKQYAATVNVINGLEANISK 102
R R R+ G V ++ GGLL G + FKG D E+T++QYA+TV +IN LE IS
Sbjct: 62 RGRERKIGELMQVRASAQGGLLNLGNLLFNFKGGDPAESTKQQYASTVTLINQLEPQISS 121
Query: 103 LSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG 162
L+DS+L D+T LR+RA ESLDS+LPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG
Sbjct: 122 LTDSQLTDRTSLLRQRALSGESLDSILPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG 181
Query: 163 EIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 218
EIAEMRTGEGKTLVAILPAYLNAL GKGVHVVTVNDYLARRDCEWVGQV RFLG+K
Sbjct: 182 EIAEMRTGEGKTLVAILPAYLNALTGKGVHVVTVNDYLARRDCEWVGQVARFLGLK 237
>pir||A57386 preprotein translocase secA precursor - spinach
Length = 1036
Score = 240 bits (612), Expect = 2e-61
Identities = 129/176 (73%), Positives = 144/176 (81%), Gaps = 8/176 (4%)
Query: 51 RSRSRRSGS---VAVASLGGLL--GGI---FKGNDTGEATRKQYAATVNVINGLEANISK 102
R R R+ G V ++ GGLL G + FKG D E+T++QYA+TV +IN LE IS
Sbjct: 62 RGRERKIGELMQVRASAQGGLLNLGNLLFNFKGGDPAESTKQQYASTVTLINQLEPQISS 121
Query: 103 LSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG 162
L+DS+L D+T LR+RA ESLDS+LPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG
Sbjct: 122 LTDSQLTDRTSLLRQRALSGESLDSILPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKG 181
Query: 163 EIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 218
EIAEMRTGEGKTLVAILPAYLNAL GKGVHVVTVNDYLARRDCEWVGQV RFLG+K
Sbjct: 182 EIAEMRTGEGKTLVAILPAYLNALTGKGVHVVTVNDYLARRDCEWVGQVARFLGLK 237
>pir||T04122 preprotein translocase secA homolog tha1, chloroplast - maize
(fragment) gi|1575790|gb|AAB09598.1| cp-SecA;
chloroplast SecA homolog [Zea mays]
Length = 291
Score = 201 bits (512), Expect = 8e-50
Identities = 101/119 (84%), Positives = 111/119 (92%)
Query: 100 ISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVL 159
+S LSD++LR +T L++RA+ ESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVL
Sbjct: 3 VSALSDADLRARTAALQDRARSGESLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVL 62
Query: 160 HKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGMK 218
HKGEIAEM+TGEGKTLVAILPAYLNAL GK VHVVTVNDYLARRDCEWVGQVPRFLG++
Sbjct: 63 HKGEIAEMKTGEGKTLVAILPAYLNALSGKEVHVVTVNDYLARRDCEWVGQVPRFLGLQ 121
>emb|CAD84719.1| SecA protein:SEC-C motif [Nitrosomonas europaea ATCC 19718]
gi|30248812|ref|NP_840882.1| SecA protein:SEC-C motif
[Nitrosomonas europaea ATCC 19718]
Length = 909
Score = 195 bits (495), Expect = 7e-48
Identities = 103/153 (67%), Positives = 116/153 (75%), Gaps = 2/153 (1%)
Query: 65 LGGLLGGIFKGNDTGEATRKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRES 124
L LL IF + + KQY V IN LEA IS LSD ELR KT E ++R E
Sbjct: 2 LSNLLKSIFGSRN--DRLIKQYLKIVRTINELEAAISPLSDEELRAKTSEFKQRVANGEK 59
Query: 125 LDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLN 184
LD LLPEAFAVVREA KRVLG+R FDVQLIGGMVLH+G+IAEMRTGEGKTL+A LP YLN
Sbjct: 60 LDQLLPEAFAVVREAGKRVLGMRHFDVQLIGGMVLHEGKIAEMRTGEGKTLMATLPTYLN 119
Query: 185 ALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGM 217
AL GKGVH+VTVNDYLA+RD EW+GQ+ RFLG+
Sbjct: 120 ALSGKGVHIVTVNDYLAKRDAEWMGQIYRFLGL 152
>ref|NP_682641.1| preprotein translocase subunit [Thermosynechococcus elongatus BP-1]
gi|22295577|dbj|BAC09403.1| preprotein translocase
subunit [Thermosynechococcus elongatus BP-1]
Length = 929
Score = 192 bits (489), Expect = 4e-47
Identities = 98/141 (69%), Positives = 112/141 (78%)
Query: 77 DTGEATRKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVV 136
D + K+Y V IN LE + LSDSEL+ KT E R+R E+LD LLPEAFAVV
Sbjct: 8 DPNQRKVKKYQPLVVEINLLEEQVQALSDSELQAKTAEFRQRLDNGETLDDLLPEAFAVV 67
Query: 137 REASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTV 196
REAS+RVLG+R FDVQLIGGM+LH G+IAEM+TGEGKTLVA LPAYLNAL GKGVH+VTV
Sbjct: 68 REASRRVLGMRHFDVQLIGGMILHDGQIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTV 127
Query: 197 NDYLARRDCEWVGQVPRFLGM 217
NDYLARRD EW+GQV RFLG+
Sbjct: 128 NDYLARRDAEWMGQVHRFLGL 148
>emb|CAA12257.1| preprotein translocase [Phormidium laminosum]
Length = 582
Score = 192 bits (487), Expect = 6e-47
Identities = 97/134 (72%), Positives = 111/134 (82%)
Query: 84 KQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRV 143
K+Y + IN LE + LSD ELR KT E ++R +K ESLD LLPEAFAVVREA+KRV
Sbjct: 15 KKYQPDLAEINLLEPEMEVLSDDELRGKTAEFKQRIEKGESLDDLLPEAFAVVREAAKRV 74
Query: 144 LGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARR 203
LG+R FDVQL+GGMVLH G+IAEM+TGEGKTLVA LPAYLNAL GKGVHV+TVNDYLARR
Sbjct: 75 LGMRHFDVQLLGGMVLHDGQIAEMKTGEGKTLVATLPAYLNALSGKGVHVITVNDYLARR 134
Query: 204 DCEWVGQVPRFLGM 217
D EW+GQV RFLG+
Sbjct: 135 DAEWMGQVHRFLGL 148
>ref|NP_953099.1| preprotein translocase, SecA subunit [Geobacter sulfurreducens PCA]
gi|39984038|gb|AAR35426.1| preprotein translocase, SecA
subunit [Geobacter sulfurreducens PCA]
Length = 897
Score = 190 bits (482), Expect = 2e-46
Identities = 97/152 (63%), Positives = 117/152 (76%), Gaps = 2/152 (1%)
Query: 68 LLGGIFKG--NDTGEATRKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESL 125
+ G I K E K+ V INGLE+ ++ L+D +LR+KTFE +ER + ESL
Sbjct: 1 MFGAIIKKIVGSKNERELKRMWPVVEKINGLESQVAGLTDDQLREKTFEFKERIARGESL 60
Query: 126 DSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNA 185
+SLLPEAFAV RE KR LG+R FDVQLIGGMVLH+G+IAEM+TGEGKTLVA LPAYLNA
Sbjct: 61 ESLLPEAFAVCREGGKRALGMRHFDVQLIGGMVLHQGKIAEMKTGEGKTLVATLPAYLNA 120
Query: 186 LVGKGVHVVTVNDYLARRDCEWVGQVPRFLGM 217
L G+GVHVVTVNDYLARRD EW+G++ RFLG+
Sbjct: 121 LTGRGVHVVTVNDYLARRDSEWMGRLYRFLGL 152
>ref|ZP_00330300.1| COG0653: Preprotein translocase subunit SecA (ATPase, RNA helicase)
[Moorella thermoacetica ATCC 39073]
Length = 896
Score = 188 bits (477), Expect = 9e-46
Identities = 93/135 (68%), Positives = 112/135 (82%)
Query: 84 KQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRV 143
K+ + V IN LE I LSDS+L+ KT E R R ++ E+LD LLPEAFAVVREAS+RV
Sbjct: 18 KKLSRQVEAINALEPEIQALSDSDLQAKTPEFRRRLERGETLDELLPEAFAVVREASRRV 77
Query: 144 LGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARR 203
LG+R FDVQL+GG+VLH+G IAEM+TGEGKTLVA LPAYLNAL G+GVH+VTVNDYLARR
Sbjct: 78 LGMRHFDVQLMGGIVLHQGRIAEMKTGEGKTLVATLPAYLNALTGRGVHIVTVNDYLARR 137
Query: 204 DCEWVGQVPRFLGMK 218
D EW+G++ RFLG+K
Sbjct: 138 DSEWMGRIYRFLGLK 152
>ref|YP_157807.1| preprotein translocase SecA [Azoarcus sp. EbN1]
gi|56312261|emb|CAI06906.1| preprotein translocase SecA
[Azoarcus sp. EbN1]
Length = 907
Score = 187 bits (475), Expect = 2e-45
Identities = 97/153 (63%), Positives = 116/153 (75%), Gaps = 2/153 (1%)
Query: 65 LGGLLGGIFKGNDTGEATRKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRES 124
+ GLL IF + + +QY+ TV IN LE IS LSD L+ KT + ++R ES
Sbjct: 2 ISGLLKKIFGSRN--DRLIRQYSQTVRAINALEPEISALSDEALQAKTADFKQRVANGES 59
Query: 125 LDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLN 184
LDS+LPEAFAVVREA KRV G+R FDVQLIGGMVLH G+I+EMRTGEGKTLVA LPAYLN
Sbjct: 60 LDSILPEAFAVVREAGKRVHGMRHFDVQLIGGMVLHNGKISEMRTGEGKTLVATLPAYLN 119
Query: 185 ALVGKGVHVVTVNDYLARRDCEWVGQVPRFLGM 217
AL GKGVHV+TVNDYLA RD +W+G++ FLG+
Sbjct: 120 ALTGKGVHVITVNDYLASRDADWMGRIYGFLGL 152
>dbj|BAB76550.1| preprotein translocase SecA subunit [Nostoc sp. PCC 7120]
gi|17232343|ref|NP_488891.1| preprotein translocase SecA
subunit [Nostoc sp. PCC 7120] gi|25298355|pir||AC2412
preprotein translocase SecA chain [imported] - Nostoc
sp. (strain PCC 7120)
Length = 930
Score = 186 bits (471), Expect = 4e-45
Identities = 90/134 (67%), Positives = 110/134 (81%)
Query: 84 KQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRV 143
K+Y + IN LE +I LSD +L+ KT E ++R K E+LD +LPEAFAVVREA +RV
Sbjct: 15 KKYQPYITEINLLEEDIKVLSDEDLKGKTAEFKQRLAKGETLDDILPEAFAVVREAGRRV 74
Query: 144 LGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARR 203
LGLR FDVQ++GG++LH G+IAEM+TGEGKTLVA LP+YLNAL GKGVHV+TVNDYLARR
Sbjct: 75 LGLRHFDVQMLGGVILHSGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVITVNDYLARR 134
Query: 204 DCEWVGQVPRFLGM 217
D EW+GQV RFLG+
Sbjct: 135 DAEWMGQVHRFLGL 148
>ref|ZP_00160528.1| COG0653: Preprotein translocase subunit SecA (ATPase, RNA helicase)
[Anabaena variabilis ATCC 29413]
Length = 930
Score = 186 bits (471), Expect = 4e-45
Identities = 90/134 (67%), Positives = 110/134 (81%)
Query: 84 KQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRV 143
K+Y + IN LE +I LSD +L+ KT E ++R K E+LD +LPEAFAVVREA +RV
Sbjct: 15 KKYQPYITEINLLEEDIKVLSDEDLKGKTAEFKQRLAKGETLDDILPEAFAVVREAGRRV 74
Query: 144 LGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARR 203
LGLR FDVQ++GG++LH G+IAEM+TGEGKTLVA LP+YLNAL GKGVHV+TVNDYLARR
Sbjct: 75 LGLRHFDVQMLGGVILHSGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVITVNDYLARR 134
Query: 204 DCEWVGQVPRFLGM 217
D EW+GQV RFLG+
Sbjct: 135 DAEWMGQVHRFLGL 148
>ref|ZP_00334851.1| COG0653: Preprotein translocase subunit SecA (ATPase, RNA helicase)
[Thiobacillus denitrificans ATCC 25259]
Length = 906
Score = 185 bits (469), Expect = 8e-45
Identities = 96/152 (63%), Positives = 116/152 (76%), Gaps = 2/152 (1%)
Query: 68 LLGGIFKG--NDTGEATRKQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESL 125
+L +FK E KQY V IN LE + +LSD+EL KT + + R ++ SL
Sbjct: 1 MLQSLFKKVFGSRNERLVKQYLQKVKAINALEPAMEQLSDAELAGKTADFKARIEQGTSL 60
Query: 126 DSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNA 185
D+LLPEAFAVVREA++RVLGLR +DVQ++GGMVLH G+IAEMRTGEGKTL+A LPAYLNA
Sbjct: 61 DTLLPEAFAVVREAARRVLGLRHYDVQMVGGMVLHDGKIAEMRTGEGKTLMATLPAYLNA 120
Query: 186 LVGKGVHVVTVNDYLARRDCEWVGQVPRFLGM 217
L GKGVHVVTVNDYLARRD EW+G+V FLG+
Sbjct: 121 LAGKGVHVVTVNDYLARRDAEWMGRVYGFLGL 152
>ref|ZP_00211587.1| COG0653: Preprotein translocase subunit SecA (ATPase, RNA helicase)
[Burkholderia cepacia R18194]
Length = 932
Score = 184 bits (468), Expect = 1e-44
Identities = 93/134 (69%), Positives = 106/134 (78%)
Query: 84 KQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRV 143
KQY TV IN LE I KL+D +LR KT E R+R ESLD LLPEAFAV REAS+RV
Sbjct: 19 KQYQKTVTTINALETQIEKLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRV 78
Query: 144 LGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARR 203
L +R FDVQ+IGGMVLH G+IAEMRTGEGKTLVA LP YLNAL G+GVHVVTVNDYLA+R
Sbjct: 79 LKMRHFDVQMIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQR 138
Query: 204 DCEWVGQVPRFLGM 217
D EW+ ++ FLG+
Sbjct: 139 DAEWMARLYNFLGL 152
>emb|CAE34553.1| preprotein translocase secA subunit [Bordetella bronchiseptica
RB50] gi|33564019|emb|CAE43285.1| preprotein translocase
secA subunit [Bordetella pertussis Tohama I]
gi|33593945|ref|NP_881589.1| preprotein translocase secA
subunit [Bordetella pertussis Tohama I]
gi|33603164|ref|NP_890724.1| preprotein translocase secA
subunit [Bordetella bronchiseptica RB50]
Length = 911
Score = 184 bits (467), Expect = 1e-44
Identities = 93/134 (69%), Positives = 106/134 (78%)
Query: 84 KQYAATVNVINGLEANISKLSDSELRDKTFELRERAQKRESLDSLLPEAFAVVREASKRV 143
K+Y V IN LE IS LSD EL KT E R+R Q+ SLD LLPEAFAVVREA KRV
Sbjct: 18 KEYRKQVAQINSLEPKISALSDEELSAKTQEFRDRHQQGTSLDDLLPEAFAVVREAGKRV 77
Query: 144 LGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALVGKGVHVVTVNDYLARR 203
G+R FDVQ++GG+ LH G+IAEMRTGEGKTL+A LP YLNA+ GKGVHVVTVNDYLARR
Sbjct: 78 FGMRHFDVQMLGGIALHNGKIAEMRTGEGKTLMATLPVYLNAIAGKGVHVVTVNDYLARR 137
Query: 204 DCEWVGQVPRFLGM 217
D EW+G++ RFLGM
Sbjct: 138 DAEWMGRLYRFLGM 151
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.353 0.155 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,334,049,186
Number of Sequences: 2540612
Number of extensions: 46652617
Number of successful extensions: 221137
Number of sequences better than 10.0: 377
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 220617
Number of HSP's gapped (non-prelim): 470
length of query: 1006
length of database: 863,360,394
effective HSP length: 138
effective length of query: 868
effective length of database: 512,755,938
effective search space: 445072154184
effective search space used: 445072154184
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 80 (35.4 bits)
Medicago: description of AC144728.10