BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144726.11 + phase: 0 
         (515 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]         518  e-145
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]   518  e-145
dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymer...   516  e-145
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...   513  e-144
ref|XP_450243.1| putative phage-type RNA polymerase [Oryza sativ...   489  e-137
dbj|BAC76604.1| RpoT1 [Oryza sativa (japonica cultivar-group)] g...   489  e-137
emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Ni...   488  e-136
gb|AAD22976.1| T7-like RNA polymerase [Zea mays]                      488  e-136
emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris]      487  e-136
sp|Q8VWF8|RPO2_NICSY DNA-directed RNA polymerase 2, chloroplast/...   487  e-136
emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA p...   486  e-136
gb|AAF32492.1| single-subunit RNA polymerase G [Triticum aestivum]    482  e-134
emb|CAA70583.1| mitochondrial singel subunit DNA-directed RNA po...   476  e-133
emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA p...   476  e-133
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                      475  e-132
emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]      472  e-131
emb|CAA04491.1| DNA-directed RNA polymerase [Arabidopsis thaliana]    434  e-120
emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Ara...   432  e-120
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]      382  e-104
emb|CAC95021.2| chloroplast RNA polymerase [Nicotiana tabacum]        374  e-102

>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score =  518 bits (1334), Expect = e-145
 Identities = 293/545 (53%), Positives = 366/545 (66%), Gaps = 62/545 (11%)

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHN----------FPEKILRHPFSRFSQVGIF 50
           MW  ++K A SR+F   S  S  L FS   +            E+   HP    SQ  IF
Sbjct: 1   MWRYISKHAYSRKF-RNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIF 59

Query: 51  TSEYK-----------------LGRS-NFSFSEHPFSF------SSISLNHFRTYGSVAA 86
           +   +                 LG S N +FS     F       S SL   R+YGS AA
Sbjct: 60  SRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGS-AA 118

Query: 87  EAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSY---KYKMLRRRQ 143
           EAI ST  ED      + +Q+L+++M  E E     L+ K+          KY  LRRRQ
Sbjct: 119 EAIVSTSEEDI-----DEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQ 173

Query: 144 IKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTK 203
           IK+ETEAWEEAA+EYQELL DM EQKLAPNLPYMKSLFLGWFEPL++AIAA+Q++C + K
Sbjct: 174 IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233

Query: 204 TRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYR 263
            R ++AP+F++LP +MMAVITMHKLMGLLMT   G GSARV+QAA  IGEAIEHE RI+R
Sbjct: 234 NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGG-GTGSARVVQAASYIGEAIEHEARIHR 292

Query: 264 FMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQA 323
           F+EKTK   A S   D +  P               + KE +RLR KV  L+KKQK +Q 
Sbjct: 293 FLEKTKKSNALS--GDLEETPGD-------------MMKERERLRKKVKILMKKQKLRQV 337

Query: 324 LGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTI 383
             IVK +D  KPWGQ+  VKVG RLIQ+L+ETAY++PP ++  DG PDI PAF HTLKT+
Sbjct: 338 RKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV 397

Query: 384 SNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYV 443
             ++  GSRRYGVI+CDP+++KGL+KTAR+MVIPYMPMLVPP +W+GYDKG YLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYI 455

Query: 444 MRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLV 503
           MR HGAKQQR+A+K  PK QL+ +F+AL+TLGNTKWRVN+ VLG++++IWA+GGR+ADLV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLV 515

Query: 504 DRDDV 508
           DR+DV
Sbjct: 516 DREDV 520


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score =  518 bits (1333), Expect = e-145
 Identities = 278/492 (56%), Positives = 351/492 (70%), Gaps = 34/492 (6%)

Query: 20  SSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSNFSFSEHPFSFSSISLNHFR 79
           S  S +  H     E+  ++P    SQ  +F+S     + +F          S SL   R
Sbjct: 60  SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSV----KGDFRVCGKR---GSGSLGFLR 112

Query: 80  TYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSY---KY 136
           +YGS AAEAI ST  ED      + +Q+L+++M  E E     L+ K+          KY
Sbjct: 113 SYGS-AAEAIASTSEEDI-----DEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKY 166

Query: 137 KMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQ 196
            +LRRRQIK+ETEAWEEAA+EYQELL DM EQKLAPNLPYMKSLFLGWFEPL++AIAA+Q
Sbjct: 167 NLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ 226

Query: 197 EICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIE 256
           ++C + K R ++AP+F++LP +MMAVITMHKLMGLLMT   G GSARV+QAA  IGEAIE
Sbjct: 227 KLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGG-GTGSARVVQAASHIGEAIE 285

Query: 257 HEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIK 316
           HE RI+RF+EKTK   A S   D +  P  +              KE +RLR KV  L+K
Sbjct: 286 HEARIHRFLEKTKKSNALS--GDLEDTPGDIM-------------KERERLRKKVKILMK 330

Query: 317 KQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAF 376
           KQK QQ   IVK +D  KPWGQ+  VKVG RLIQ+L+ETAY++PP ++  D  PDI PAF
Sbjct: 331 KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAF 390

Query: 377 KHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAY 436
            HTLKT+  ++  GSRRYGVI+CDP+++KGL+KTAR+MVIPYMPMLVPP +W+GYDKGAY
Sbjct: 391 VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448

Query: 437 LFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANG 496
           LFLPSY+MR HGAKQQR+A+K  PK QL+ +F+AL+TLGNTKWR+N+ VLG++D+IWA+G
Sbjct: 449 LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508

Query: 497 GRVADLVDRDDV 508
           GR+ADLVDR+DV
Sbjct: 509 GRLADLVDREDV 520


>dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|34925359|sp|Q93Y94|RPO1_NICSY
           DNA-directed RNA polymerase 1, mitochondrial precursor
           (T7 bacteriophage-type single subunit RNA polymerase 1)
           (NsRpoT-A)
          Length = 1002

 Score =  516 bits (1330), Expect = e-145
 Identities = 277/492 (56%), Positives = 351/492 (71%), Gaps = 34/492 (6%)

Query: 20  SSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSNFSFSEHPFSFSSISLNHFR 79
           S  S +  H     E+  ++P    SQ  +F+S     + +F          S SL   R
Sbjct: 60  SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSV----KGDFRVCGKR---GSGSLGFLR 112

Query: 80  TYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSY---KY 136
           +YGS AAEAI ST  ED      + +Q+L+++M  E E     L+ K+          KY
Sbjct: 113 SYGS-AAEAIASTSEEDI-----DEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKY 166

Query: 137 KMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQ 196
            +LRRRQIK+ETEAWEEAA+EYQELL DM EQKLAPNLPYMKSLFLGWFEPL++AIAA+Q
Sbjct: 167 NLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ 226

Query: 197 EICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIE 256
           ++C + K R ++AP+F++LP +MMAVITMHKLMGLLMT   G GSARV+QAA  IGEAIE
Sbjct: 227 KLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGG-GTGSARVVQAASHIGEAIE 285

Query: 257 HEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIK 316
           HE RI+RF+EKTK   A S   D +  P  +              KE +R+R KV  L+K
Sbjct: 286 HEARIHRFLEKTKKSNALS--GDLEDTPGDIM-------------KERERVRKKVKILMK 330

Query: 317 KQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAF 376
           KQK QQ   IVK +D  KPWGQ+  VKVG RLIQ+L+ETAY++PP ++  D  PDI PAF
Sbjct: 331 KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAF 390

Query: 377 KHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAY 436
            HTLKT+  ++  GSRRYGVI+CDP+++KGL+KTAR+MVIPYMPMLVPP +W+GYDKGAY
Sbjct: 391 VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448

Query: 437 LFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANG 496
           LFLPSY+MR HGAKQQR+A+K  PK QL+ +F+AL+TLGNTKWR+N+ VLG++D+IWA+G
Sbjct: 449 LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508

Query: 497 GRVADLVDRDDV 508
           GR+ADLVDR+DV
Sbjct: 509 GRLADLVDREDV 520


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris]
          Length = 1002

 Score =  513 bits (1321), Expect = e-144
 Identities = 276/492 (56%), Positives = 349/492 (70%), Gaps = 34/492 (6%)

Query: 20  SSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSNFSFSEHPFSFSSISLNHFR 79
           S  S +  H     E+  ++P    SQ  +F+S     + +F          S SL   R
Sbjct: 60  SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSV----KGDFRVCGKR---GSGSLGFLR 112

Query: 80  TYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSY---KY 136
           +YGS AAEAI ST  ED      + +Q+L+++M  E E     L+ K+          KY
Sbjct: 113 SYGS-AAEAIASTSEEDT-----DEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKY 166

Query: 137 KMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQ 196
            +LRRRQIK+ETEAWEEAA+EYQELL DM EQKLAPNLPYMKSLFLGWFEPL++AIAA+Q
Sbjct: 167 NLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ 226

Query: 197 EICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIE 256
           ++C + K R + AP+F++LP +MMAVITMHKLMG LMT   G GSARV+QAA  IGEAIE
Sbjct: 227 KLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGG-GTGSARVVQAASHIGEAIE 285

Query: 257 HEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIK 316
           HE RI+RF+EKTK   A S   D +  P  +              KE +R+R KV  L+K
Sbjct: 286 HEARIHRFLEKTKKSNALS--GDLEDTPGDIM-------------KERERVRKKVKILMK 330

Query: 317 KQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAF 376
           KQK QQ   IVK +D  KPWGQ+  VKVG RLIQ+L+ETAY++PP ++  D  PDI PAF
Sbjct: 331 KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAF 390

Query: 377 KHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAY 436
            HTLKT+  ++  GSRRYGVI+CDP+++KGL+KTAR+MVIPYMPMLVPP +W+GYDKGAY
Sbjct: 391 VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448

Query: 437 LFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANG 496
           LFLPSY+MR HGAKQQR+A+K  PK QL+ +F+AL+TLGNTKWR+N+ VLG++D+IWA+G
Sbjct: 449 LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508

Query: 497 GRVADLVDRDDV 508
           GR+ADLVDR+DV
Sbjct: 509 GRLADLVDREDV 520


>ref|XP_450243.1| putative phage-type RNA polymerase [Oryza sativa (japonica
           cultivar-group)] gi|48716846|dbj|BAD23544.1| putative
           phage-type RNA polymerase [Oryza sativa (japonica
           cultivar-group)] gi|48716693|dbj|BAD23376.1| putative
           phage-type RNA polymerase [Oryza sativa (japonica
           cultivar-group)]
          Length = 951

 Score =  489 bits (1260), Expect = e-137
 Identities = 237/376 (63%), Positives = 300/376 (79%), Gaps = 14/376 (3%)

Query: 134 YKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIA 193
           +KY MLRRRQI+IETEAWE+AA EY+ELL DM +QKLAPNLPY+KSLFLGWFEPL++ I 
Sbjct: 175 HKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQII 234

Query: 194 ADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGE 253
           A+QE+  +   R SHA YFN LP DMMAVITMHKLMGLLMT S G GS RVIQAACQIGE
Sbjct: 235 AEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGS-GDGSVRVIQAACQIGE 293

Query: 254 AIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVAS 313
           AIEHE RI++F+EKTK K      ++ +               +  +AKE++RLR KV  
Sbjct: 294 AIEHEVRIHKFLEKTKKKSNKEMDNEEEG-------------GDSDIAKEQERLRKKVTD 340

Query: 314 LIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIF 373
           L+KKQK +Q   IVK +D +KPWGQ+A  KVGSRLI+L+IETAY++PPA++  DG PDI 
Sbjct: 341 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 400

Query: 374 PAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
           PAF H ++T++ +    SRRYGVI+CDP++++GL++TA++MVIPYMPML+PP +W GYDK
Sbjct: 401 PAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 460

Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
           GA+LFLPSYVMR HGA+QQRDA++ AP+ Q+ S+FEALNTLG+TKWRVNK VL ++D+IW
Sbjct: 461 GAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIW 520

Query: 494 ANGGRVADLVDRDDVS 509
           ++GGR+ADLVDR DV+
Sbjct: 521 SSGGRLADLVDRTDVA 536


>dbj|BAC76604.1| RpoT1 [Oryza sativa (japonica cultivar-group)]
           gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type single
           subunit RNA polymerase [Oryza sativa (japonica
           cultivar-group)]
          Length = 1017

 Score =  489 bits (1260), Expect = e-137
 Identities = 237/376 (63%), Positives = 300/376 (79%), Gaps = 14/376 (3%)

Query: 134 YKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIA 193
           +KY MLRRRQI+IETEAWE+AA EY+ELL DM +QKLAPNLPY+KSLFLGWFEPL++ I 
Sbjct: 175 HKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQII 234

Query: 194 ADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGE 253
           A+QE+  +   R SHA YFN LP DMMAVITMHKLMGLLMT S G GS RVIQAACQIGE
Sbjct: 235 AEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGS-GDGSVRVIQAACQIGE 293

Query: 254 AIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVAS 313
           AIEHE RI++F+EKTK K      ++ +               +  +AKE++RLR KV  
Sbjct: 294 AIEHEVRIHKFLEKTKKKSNKEMDNEEEG-------------GDSDIAKEQERLRKKVTD 340

Query: 314 LIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIF 373
           L+KKQK +Q   IVK +D +KPWGQ+A  KVGSRLI+L+IETAY++PPA++  DG PDI 
Sbjct: 341 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 400

Query: 374 PAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
           PAF H ++T++ +    SRRYGVI+CDP++++GL++TA++MVIPYMPML+PP +W GYDK
Sbjct: 401 PAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 460

Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
           GA+LFLPSYVMR HGA+QQRDA++ AP+ Q+ S+FEALNTLG+TKWRVNK VL ++D+IW
Sbjct: 461 GAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIW 520

Query: 494 ANGGRVADLVDRDDVS 509
           ++GGR+ADLVDR DV+
Sbjct: 521 SSGGRLADLVDRTDVA 536


>emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  488 bits (1257), Expect = e-136
 Identities = 264/521 (50%), Positives = 359/521 (68%), Gaps = 31/521 (5%)

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
           MW  + K+ SSR       SS +  +S      + + +      S + I  S   +G  N
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQN 94

Query: 61  FS-------FSEHPFSFSSISLNHF---RTYGSVA-AEAIESTDTEDDCSGSEEVVQKLL 109
                    F   P   + ++ N F   ++Y SVA A A+ STD E+D S  +EV Q+LL
Sbjct: 95  LGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEV-QELL 153

Query: 110 DQMVIEEEKKNPQLEEKKKNKNNSY---KYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
            ++  EE+K+      K++   +     KY+ L+RRQ+K+ETEAWE+AA+EY+ELL DM 
Sbjct: 154 TELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 213

Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
           EQKLAPNLPY+KSLFLGWFEPL++ IA +QE+C   K++ ++A Y  +LP DMMAVITMH
Sbjct: 214 EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMH 273

Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
           KLMGLLMT  +  G+ARV+QAA  IG+AIE E RI+ F+EKTK +KA   K   D     
Sbjct: 274 KLMGLLMTGGDH-GTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED----- 327

Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
             GE++T        +E+++LR KV +L+KKQK +    IV+ +D +KPWGQ+A+ KVGS
Sbjct: 328 --GEHVT--------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGS 377

Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
           RLI+LL++TAY++PPAN+     PDI PAF H+++T++ ++ + SRRYG+I+CD ++ KG
Sbjct: 378 RLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKG 437

Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
           LE+TAR+MVIPYMPMLVPP  W GYDKG +L+LPSYVMR HGA+QQR+A+K A +NQL  
Sbjct: 438 LERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQP 497

Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDD 507
           +FEAL+TLG+TKWR+NK VL VID+IWA GGR+ADLVDRDD
Sbjct: 498 VFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDD 538


>gb|AAD22976.1| T7-like RNA polymerase [Zea mays]
          Length = 975

 Score =  488 bits (1255), Expect = e-136
 Identities = 247/447 (55%), Positives = 322/447 (71%), Gaps = 35/447 (7%)

Query: 83  SVAAEAIESTDTEDDCSGSEEVVQ-----KLLDQMVIEEEKKNPQLEEKKKNKNNS---- 133
           S AAEA+ S D E+     EE+V+      L     + EE + P  + + +++ +     
Sbjct: 61  SAAAEAVSSEDAEELHHAIEEIVRPQPSPNLPQPQAVAEEYQAPGRDHRSRHRRSGRGRH 120

Query: 134 ------------YKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLF 181
                       ++Y  LRRRQI+IETEAWE+AA EY+ELL DM EQKLAPNLPY+KSLF
Sbjct: 121 AEVLAAEHGMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLF 180

Query: 182 LGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGS 241
           LGWFEPL++ IA +QE+  D  +R SH P+F+ LP DMMAVITMHKLMGLLMT S G GS
Sbjct: 181 LGWFEPLRDQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGS-GDGS 239

Query: 242 ARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLA 301
            RVIQAACQIGEAIEHE RI RF+EKT+ K     +++ ++              +  +A
Sbjct: 240 VRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEEA-------------GDTNIA 286

Query: 302 KEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPP 361
            E++RLR KV  L+KKQK +Q   IVK +D+++PWGQ+A  KVGSRLI L I TA+++PP
Sbjct: 287 VEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPP 346

Query: 362 ANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPM 421
           A++  DG PDI PAF+H ++T+  +    SRRYGVI+CDP++++GL++TA++MVIPYMPM
Sbjct: 347 ASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPM 406

Query: 422 LVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRV 481
           L+PP  W GYDKGA+LFLPSYVMR HGA+QQRDA+K AP+ Q+  +FEALNTLG+TKWRV
Sbjct: 407 LIPPICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRV 466

Query: 482 NKSVLGVIDQIWANGGRVADLVDRDDV 508
           NK VL ++D+IW+NGGR+ADLVDR DV
Sbjct: 467 NKRVLSIVDRIWSNGGRLADLVDRTDV 493


>emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris]
          Length = 1020

 Score =  487 bits (1254), Expect = e-136
 Identities = 265/521 (50%), Positives = 356/521 (67%), Gaps = 32/521 (6%)

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
           MW  + K+ SSR       SS +  +S      + I +      S + I  S   +G  N
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94

Query: 61  FS-------FSEHPFSFSSISLNHF--RTYGSVA-AEAIESTDTEDDCSGSEEVVQKLLD 110
                    F   P   + ++ N    ++Y SVA A A+ STD E+D S  +EV + L +
Sbjct: 95  LGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTE 154

Query: 111 QMVIEEEKKNPQLEEKKKNKNNS----YKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
             + +EEKK      +K+    S     KY+ L+RRQ+K+ETEAWE+AA+EY+ELL DM 
Sbjct: 155 --LKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 212

Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
           EQKLAPNLPY+KSLFLGWFEPL++ IA +QE+C   K++ ++A YF +LP DMMAVITMH
Sbjct: 213 EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMH 272

Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
           KLMGLLMT  +  G+ARV+QAA  IG+AIE E RI+ F+EKTK +KA   K   D     
Sbjct: 273 KLMGLLMTGGDH-GTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED----- 326

Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
             GE++T        +E+++LR KV +L+KKQK +    IV+ +D +KPWGQ+A+ KVGS
Sbjct: 327 --GEHVT--------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGS 376

Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
           RLI LL++TAY++PPAN+     PDI PAF H+++T++ ++ + SRRYG+I+CD ++ KG
Sbjct: 377 RLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKG 436

Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
           LE+TAR+MVIPYMPMLVPP  W GYDKG +L+LPSYVMR HGA+QQR+A+K A +NQL  
Sbjct: 437 LERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQP 496

Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDD 507
           +FEAL+TLGNTKWR+NK VL V+D+IWA GGR+ADLVDRDD
Sbjct: 497 VFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDD 537


>sp|Q8VWF8|RPO2_NICSY DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor
           (T7 bacteriophage-type single subunit RNA polymerase 2)
           (NsRpoT-B) gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris] gi|17221593|dbj|BAB78464.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  487 bits (1253), Expect = e-136
 Identities = 265/521 (50%), Positives = 356/521 (67%), Gaps = 32/521 (6%)

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
           MW  + K+ SSR       SS +  +S      + I +      S + I  S   +G  N
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94

Query: 61  FS-------FSEHPFSFSSISLNHF--RTYGSVA-AEAIESTDTEDDCSGSEEVVQKLLD 110
                    F   P   + ++ N    ++Y SVA A A+ STD E+D S  +EV + L +
Sbjct: 95  LGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTE 154

Query: 111 QMVIEEEKKNPQLEEKKKNKNNS----YKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
             + +EEKK      +K+    S     KY+ L+RRQ+K+ETEAWE+AA+EY+ELL DM 
Sbjct: 155 --LKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 212

Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
           EQKLAPNLPY+KSLFLGWFEPL++ IA +QE+C   K++ ++A YF +LP DMMAVITMH
Sbjct: 213 EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMH 272

Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
           KLMGLLMT  +  G+ARV+QAA  IG+AIE E RI+ F+EKTK +KA   K   D     
Sbjct: 273 KLMGLLMTGGDH-GTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED----- 326

Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
             GE++T        +E+++LR KV +L+KKQK +    IV+ +D +KPWGQ+A+ KVGS
Sbjct: 327 --GEHVT--------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGS 376

Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
           RLI LL++TAY++PPAN+     PDI PAF H+++T++ ++ + SRRYG+I+CD ++ KG
Sbjct: 377 RLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQCDELVFKG 436

Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
           LE+TAR+MVIPYMPMLVPP  W GYDKG +L+LPSYVMR HGA+QQR+A+K A +NQL  
Sbjct: 437 LERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQP 496

Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDD 507
           +FEAL+TLGNTKWR+NK VL V+D+IWA GGR+ADLVDRDD
Sbjct: 497 VFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDD 537


>emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
           [Chenopodium album]
          Length = 988

 Score =  486 bits (1252), Expect = e-136
 Identities = 271/501 (54%), Positives = 347/501 (69%), Gaps = 37/501 (7%)

Query: 18  SQSSTSLR-FSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSNFSFSEHPFS-FSSISL 75
           SQ S  +R F  Q++   +     F R  ++    SE  +G SNF F  +PF  F   + 
Sbjct: 33  SQDSAKIRQFLGQNSVNPRFPMLGFGRNGELLCRNSE--MGGSNFMFYANPFGIFGFYAQ 90

Query: 76  NHFRTYGSVAA-EAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKN--- 131
           +   +Y + AA E I +  +E+D     + +++L+D+ + + E+  PQ   +K+  N   
Sbjct: 91  STSCSYATAAAAEEIVTASSEED-----DEIRELVDE-INKLERVKPQSIRRKEPINMVA 144

Query: 132 --NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLK 189
              + +Y +LR+RQIK+ETEAW EAAREYQELL DM EQKLAPNLPYMKSLFLGWFEPLK
Sbjct: 145 GMTAGRYNVLRKRQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKSLFLGWFEPLK 204

Query: 190 NAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAAC 249
           +AI A QE CK  + R  +   F+ELP DMMAVITMHKLMGLLMT S G G   VIQAA 
Sbjct: 205 DAIKAHQEACKVGRNRPLYGECFDELPADMMAVITMHKLMGLLMTGS-GNGGTTVIQAAT 263

Query: 250 QIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRN 309
           QIGEA+E E +I +F+EK+K K AT++  + DS                  AK ++RL  
Sbjct: 264 QIGEAVEQEAKIRKFLEKSKKKPATNNNDEDDS------------------AKAQQRLAK 305

Query: 310 KVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGG 369
           KV +L+KKQK  Q   IV+G+D +KPW Q+ QVKVG +LIQLL ETAY++PPA++  DG 
Sbjct: 306 KVTTLMKKQKISQVREIVRGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQLADGP 365

Query: 370 PDIFPAFKHTLKTISNDSNNG-SRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNW 428
           PDI PAF HT KT+  +S  G  RRYGVIECDP++++GLEKTAR+MVIPYMPML+PP NW
Sbjct: 366 PDIRPAFIHTQKTVCKESQKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNW 425

Query: 429 IGYDKGAYLFLPSYVMRIHGAKQQRDALK-WAPKNQLDSIFEALNTLGNTKWRVNKSVLG 487
            GYDKGAYL+LPSY+MR HG KQQRDA+K  A  N L ++FEAL+TLGNTKWRVNK VL 
Sbjct: 426 TGYDKGAYLYLPSYIMRTHGVKQQRDAIKRVARDNNLCTVFEALDTLGNTKWRVNKKVLS 485

Query: 488 VIDQIWANGGRVADLVDRDDV 508
           +ID+IWA+GG +ADLVDR+D+
Sbjct: 486 IIDRIWASGGCLADLVDREDM 506


>gb|AAF32492.1| single-subunit RNA polymerase G [Triticum aestivum]
          Length = 1005

 Score =  482 bits (1240), Expect = e-134
 Identities = 249/451 (55%), Positives = 324/451 (71%), Gaps = 32/451 (7%)

Query: 76  NHFRTYGSVAAEAIESTDTEDDCSGSEEVVQ------------KLLDQMVIEEEKKNP-- 121
           + F +  + AAEA+ S + ++     EE+V+                Q   +E+++    
Sbjct: 89  SRFASSSAAAAEAVSSEEVDEPHHAPEEIVRLGPNTKLPVAEAAAAGQAGKKEQRRGRGQ 148

Query: 122 --QLEEKKKNKNNSY-KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMK 178
             QL E        Y KY  LR+RQI+IETEAWE+AA+EY+ELL DM E KLAPNLPY+K
Sbjct: 149 GRQLAELAAEHGIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVK 208

Query: 179 SLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNG 238
           SLFL WFEPL++ I A+QE+  +  TR SHAPYFN LP DMMAVITMHKLMGLLMT S G
Sbjct: 209 SLFLSWFEPLRDQIIAEQELVSERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGS-G 267

Query: 239 VGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENE 298
            GS RVIQAACQIGEA+EHE RI++F+EKTK K         ++V A +           
Sbjct: 268 DGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDADI----------- 316

Query: 299 KLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYL 358
             AKE++RLR KV  L+KKQK +Q   +VK +D  +PWGQ+A  KVGSRLI+L IETA++
Sbjct: 317 --AKEQERLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHI 374

Query: 359 EPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPY 418
           +PPA++ GD  P+I PAF H ++T++ +    SRRYGVI+CDP++++GL++TA++MVIPY
Sbjct: 375 QPPASQSGDSTPEIRPAFTHEMRTVAREQRK-SRRYGVIKCDPLVRQGLDRTAKHMVIPY 433

Query: 419 MPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTK 478
           MPML+PP NW GYDKGA+LFLPSYVMR HGA+QQR+A+K APK Q+ +IFEAL+ LG+TK
Sbjct: 434 MPMLIPPINWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTK 493

Query: 479 WRVNKSVLGVIDQIWANGGRVADLVDRDDVS 509
           WRVNK VL ++D+IW++GGR+ADLVDR DVS
Sbjct: 494 WRVNKEVLSIVDRIWSSGGRLADLVDRADVS 524


>emb|CAA70583.1| mitochondrial singel subunit DNA-directed RNA polymerase
           [Arabidopsis thaliana] gi|2330566|emb|CAA70210.1|
           mitochondrial single-subunit DNA-dependent RNA
           polymerase [Arabidopsis thaliana]
           gi|15221580|ref|NP_177063.1| DNA-directed RNA
           polymerase, mitochondrial (RPOMT) [Arabidopsis thaliana]
           gi|12323220|gb|AAG51592.1| DNA-directed RNA polymerase
           [Arabidopsis thaliana] gi|25288344|pir||D96714
           DNA-directed RNA polymerase [imported] - Arabidopsis
           thaliana gi|3914832|sp|P92969|RPOM_ARATH DNA-directed
           RNA polymerase, mitochondrial precursor
          Length = 976

 Score =  476 bits (1225), Expect = e-133
 Identities = 252/522 (48%), Positives = 347/522 (66%), Gaps = 42/522 (8%)

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
           MW  +  RAS R+    S SS+S       ++P   +R   S  +  G+        R+ 
Sbjct: 1   MWRNILGRASLRKVKFLSDSSSS-----GTHYPVNRVRGILSSVNLSGV--------RNG 47

Query: 61  FSFSEHPFSFSSISLNHFRTYG----SVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEE 116
            S +         S  H + Y     + AA+AI+STD ED+ SGS+EV     ++++ E 
Sbjct: 48  LSINPVNEMGGLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEV-----NELITEM 102

Query: 117 EKKNPQLEEKKKNKN----------NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
           EK+  ++ +K +              + K+ ML++RQ+K+ETE WE AARE +E+L DM 
Sbjct: 103 EKETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMC 162

Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
           EQKLAPNLPYMKSLFLGWFEP++NAI  D +  K  K ++ +AP+  +LP D MAVITMH
Sbjct: 163 EQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMH 222

Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
           K+MGLLMTN+ GVG  +++ AA QIGEA+E E RI  F++K   K AT    ++++    
Sbjct: 223 KMMGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEA---- 278

Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
              EN++    E +AKE ++ R +V  L++K K +Q   +V+  D  KPWGQEAQVKVG+
Sbjct: 279 ---ENVS---EEIVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGA 332

Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
           RLIQLL+E AY++PPA +F DG PDI PAFK   +T++ ++   SRRYG IECDP++ KG
Sbjct: 333 RLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKG 392

Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
           L+K+AR+MVIPY+PML+PP NW GYD+GA+ FLPSYVMR HGAKQQR  +K  PK QL+ 
Sbjct: 393 LDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEP 452

Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
           ++EAL+TLGNTKW++NK VL ++D+IWANGGR+  LVDR+DV
Sbjct: 453 VYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDV 494


>emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA polymerase
           [Arabidopsis thaliana]
          Length = 976

 Score =  476 bits (1225), Expect = e-133
 Identities = 252/522 (48%), Positives = 347/522 (66%), Gaps = 42/522 (8%)

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
           MW  +  RAS R+    S SS+S       ++P   +R   S  +  G+        R+ 
Sbjct: 1   MWRNILGRASLRKVKFLSDSSSS-----GTHYPVNRVRGILSSVNLSGV--------RNG 47

Query: 61  FSFSEHPFSFSSISLNHFRTYG----SVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEE 116
            S +         S  H + Y     + AA+AI+STD ED+ SGS+EV     ++++ E 
Sbjct: 48  LSINPVNEMGGLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEV-----NELITEM 102

Query: 117 EKKNPQLEEKKKNKN----------NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
           EK+  ++ +K +              + K+ ML++RQ+K+ETE WE AARE +E+L DM 
Sbjct: 103 EKETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMC 162

Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
           EQKLAPNLPYMKSLFLGWFEP++NAI  D +  K  K ++ +AP+  +LP D MAVITMH
Sbjct: 163 EQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMH 222

Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
           K+MGLLMTN+ GVG  +++ AA QIGEA+E E RI  F++K   K AT    ++++    
Sbjct: 223 KMMGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEA---- 278

Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
              EN++    E +AKE ++ R +V  L++K K +Q   +V+  D  KPWGQEAQVKVG+
Sbjct: 279 ---ENVS---EEIVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGA 332

Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
           RLIQLL+E AY++PPA +F DG PDI PAFK   +T++ ++   SRRYG IECDP++ KG
Sbjct: 333 RLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKG 392

Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
           L+K+AR+MVIPY+PML+PP NW GYD+GA+ FLPSYVMR HGAKQQR  +K  PK QL+ 
Sbjct: 393 LDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEP 452

Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
           ++EAL+TLGNTKW++NK VL ++D+IWANGGR+  LVDR+DV
Sbjct: 453 VYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDV 494


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score =  475 bits (1223), Expect = e-132
 Identities = 235/375 (62%), Positives = 297/375 (78%), Gaps = 16/375 (4%)

Query: 135 KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAA 194
           KY  LR+RQI+IETEAWE+AA+EY+ELL DM E KLAPNLPY+KSLFLGWFEPL++ I A
Sbjct: 23  KYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIA 82

Query: 195 DQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEA 254
           +QE+  +  TR SHAPYFN LP DMMAVITMHKLMGLLMT S G GS RVIQAACQIGEA
Sbjct: 83  EQELVGERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGS-GDGSVRVIQAACQIGEA 141

Query: 255 IEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASL 314
           +EHE RI++F+EKTK K       + D V  P   +         +AKE++ LR KV  L
Sbjct: 142 VEHEVRIHKFLEKTKKKNT----KEVDKVVEPGDSD---------IAKEQQLLRKKVTDL 188

Query: 315 IKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFP 374
           +KKQK +Q   +VK +D  +PWGQ+A  KVGSRLI+L IETA+++PPA++ GD  P+I P
Sbjct: 189 MKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRP 248

Query: 375 AFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKG 434
           AF H ++T++ +    SRRYGVI+CDP++++GL++TA++MVIPYMPML+PP NW GYDKG
Sbjct: 249 AFTHEMRTVAREQK--SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKG 306

Query: 435 AYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWA 494
           A+LFLPSYVMR HGA+QQR+A+K APK Q+ +IFEAL+ LG+TKWRVNK VL ++D+IW+
Sbjct: 307 AHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSIVDRIWS 366

Query: 495 NGGRVADLVDRDDVS 509
           +GGR+ADLVDR DVS
Sbjct: 367 SGGRLADLVDRADVS 381


>emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 1036

 Score =  472 bits (1215), Expect = e-131
 Identities = 262/531 (49%), Positives = 349/531 (65%), Gaps = 40/531 (7%)

Query: 1   MWSKLAKRASSR------RFILPSQSSTSLRFSHQHNFPEKILRHPFS-------RFSQV 47
           MW   AK+A SR      R    S+S + L  +H   F +++   PF         FS+V
Sbjct: 41  MWRNFAKQAISRTPNLCLRKFSISRSYSFLGGTHDCGFSDRLKFRPFELGFCKNRSFSEV 100

Query: 48  GIFTSEYKLGRSNFSFSEHPFSFSSISLNHFRT-----YGSVA-AEAIESTDTEDDCSGS 101
           G       L +      E P S    +  +F       Y SV  AE   STD EDD S  
Sbjct: 101 GFCREGGSLVKEGIG--ERPVSGCLGNRLNFNVVCPKGYASVVEAEVDSSTDLEDDVSVF 158

Query: 102 EEVVQKLLDQMVIEEEK----KNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAARE 157
           +E+ Q+L+++M  EE++    ++ Q ++K       YKY+ LR RQIK+ETE+W++AA E
Sbjct: 159 DEI-QELVEEMRKEEKRAKWRESHQRQQKMVAGMPLYKYQKLRNRQIKLETESWQQAANE 217

Query: 158 YQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPP 217
           Y+ELL DM + KLAPNLPY+KSLFLGWFEP +++I  DQE+ +  K R ++  YF++LP 
Sbjct: 218 YKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQELIRQGKCRGAYGTYFDQLPA 277

Query: 218 DMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHK 277
           DMMA+ITMHKLMG+LMT S G GS +V+QAAC +GEAIE E RI+ F+EK K KK    K
Sbjct: 278 DMMAIITMHKLMGMLMTGS-GHGSVKVVQAACALGEAIEQEVRIHTFLEKAKKKKGDRSK 336

Query: 278 SDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWG 337
              D+              ++   +E++ LR  V +LIKKQK++QAL IV  +   KPWG
Sbjct: 337 KPDDAA-------------SDAEIQEQQHLRKNVNNLIKKQKRRQALKIVDSQGDLKPWG 383

Query: 338 QEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVI 397
            E + KVGSRLI+LLI+TAY++PPA++     PD+ PAF H+LK++  ++    RR+G+I
Sbjct: 384 SETRAKVGSRLIELLIQTAYIQPPASQSACDPPDLRPAFVHSLKSVGPENKKTGRRFGMI 443

Query: 398 ECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALK 457
           ECDP+I KGLEKT R++VIPYMPMLVPP  W GYDKGAYL L S+VMR HG+K QR A++
Sbjct: 444 ECDPLIIKGLEKTPRHIVIPYMPMLVPPEKWTGYDKGAYLVLRSFVMRTHGSKHQRVAVR 503

Query: 458 WAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
            A + QL S+FEAL+TLGNTKWRVNK VL ++D++WANGGR+ADLVDRDDV
Sbjct: 504 RASEEQLKSVFEALDTLGNTKWRVNKKVLSIVDRVWANGGRLADLVDRDDV 554


>emb|CAA04491.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 1011

 Score =  434 bits (1115), Expect = e-120
 Identities = 254/517 (49%), Positives = 327/517 (63%), Gaps = 36/517 (6%)

Query: 1   MWSKLAKRASSR---RFILPSQSSTSLRFSHQHNFPEKI-LRHPF--SRFSQVGIFTSEY 54
           MW  +AK+A SR   R  + SQ+   L  S +  F + +  R P   S     G      
Sbjct: 40  MWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLGSPCHGKGFRCLSG 99

Query: 55  KLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVI 114
              R  FS SE   S +       R Y SVA E + STD E+     E  V +LL +M  
Sbjct: 100 ITRREEFSKSERCLSGTLA-----RGYTSVAEEEVLSTDVEE-----EPEVDELLKEMKK 149

Query: 115 EEEKKNPQLEEKKKNKN---NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLA 171
           E+++++ +    KK         K++ L RRQ+KIETE WE AA EY ELL DM EQKLA
Sbjct: 150 EKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLA 209

Query: 172 PNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGL 231
           PNLPY+KSLFLGWFEPL++AIA DQE+ +  K++ ++A Y ++LP D ++VITMHKLMG 
Sbjct: 210 PNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGH 269

Query: 232 LMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGEN 291
           LMT  +  G  +V+ AAC +G+AIE E RI  F++K K       K D +     V    
Sbjct: 270 LMTGGDN-GCVKVVHAACTVGDAIEQEIRICTFLDKKK-------KGDDNEESGGV---- 317

Query: 292 LTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQL 351
               ENE   KE+ +LR KV  LIKKQK      I++  D  KPW  + + KVGSRLI+L
Sbjct: 318 ----ENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIEL 373

Query: 352 LIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTA 411
           L+ TAY++ PA++  +  PD+ PAF HT K      N+G R+YGVIECDP+++KGLEK+ 
Sbjct: 374 LVRTAYIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSG-RKYGVIECDPLVRKGLEKSG 432

Query: 412 RNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEAL 471
           R  V+PYMPMLVPP  W GYDKGAYLFL SY+MR HGAKQQR+ALK APK QL  +FEAL
Sbjct: 433 RYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIMRTHGAKQQREALKSAPKGQLQPVFEAL 492

Query: 472 NTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
           +TLG+TKWRVNK VL V+D+IW++GG VAD+VDR DV
Sbjct: 493 DTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDV 529


>emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana]
           gi|11340683|emb|CAC17120.1| phage-type RNA polymerase
           rpoT2 [Arabidopsis thaliana]
           gi|15242369|ref|NP_197074.1| DNA-directed RNA polymerase
           (RPOT2) [Arabidopsis thaliana] gi|11357270|pir||T51399
           DNA-directed RNA polymerase, mitochondrial - Arabidopsis
           thaliana
          Length = 1011

 Score =  432 bits (1112), Expect = e-120
 Identities = 253/517 (48%), Positives = 327/517 (62%), Gaps = 36/517 (6%)

Query: 1   MWSKLAKRASSR---RFILPSQSSTSLRFSHQHNFPEKI-LRHPF--SRFSQVGIFTSEY 54
           MW  +AK+A SR   R  + SQ+   L  S +  F + +  R P   S     G      
Sbjct: 40  MWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLGSPCHGKGFRCLSG 99

Query: 55  KLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVI 114
              R  FS SE   S +       R Y SVA E + STD E+     E  V +LL +M  
Sbjct: 100 ITRREEFSKSERCLSGTLA-----RGYTSVAEEEVLSTDVEE-----EPEVDELLKEMKK 149

Query: 115 EEEKKNPQLEEKKKNKN---NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLA 171
           E+++++ +    KK         K++ L RRQ+KIETE WE AA EY ELL DM EQKLA
Sbjct: 150 EKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLA 209

Query: 172 PNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGL 231
           PNLPY+KSLFLGWFEPL++AIA DQE+ +  K++ ++A Y ++LP D ++VITMHKLMG 
Sbjct: 210 PNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGH 269

Query: 232 LMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGEN 291
           LMT  +  G  +V+ AAC +G+AIE E RI  F++K K       K D +     V    
Sbjct: 270 LMTGGDN-GCVKVVHAACTVGDAIEQEIRICTFLDKKK-------KGDDNEESGGV---- 317

Query: 292 LTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQL 351
               ENE   KE+ +LR KV  LIKKQK      I++  D  KPW  + + KVGSRLI+L
Sbjct: 318 ----ENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIEL 373

Query: 352 LIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTA 411
           L+ TAY++ PA++  +  PD+ PAF HT K      N+G R+YGVIECDP+++KGLEK+ 
Sbjct: 374 LVRTAYIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSG-RKYGVIECDPLVRKGLEKSG 432

Query: 412 RNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEAL 471
           R  V+PYMPMLVPP  W GYDKGAYLFL SY+M+ HGAKQQR+ALK APK QL  +FEAL
Sbjct: 433 RYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEAL 492

Query: 472 NTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
           +TLG+TKWRVNK VL V+D+IW++GG VAD+VDR DV
Sbjct: 493 DTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDV 529


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score =  382 bits (981), Expect = e-104
 Identities = 188/375 (50%), Positives = 263/375 (70%), Gaps = 21/375 (5%)

Query: 135 KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAA 194
           KY +LRRRQIK ETEAWE    EY+E + +MR++KLAPNLP +K+LFLGWFEPLK AI  
Sbjct: 153 KYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEK 212

Query: 195 DQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEA 254
           +Q+  +  K +  +  + + LP D MAVI MHK+M LLM   N  G  R++QAA QIG A
Sbjct: 213 EQKSQRSRKQKAIYGYHIDMLPADKMAVIVMHKMMSLLMVG-NDAGCVRLVQAALQIGTA 271

Query: 255 IEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASL 314
           IE E +I+ F+EKTK     + + ++  +P             E L KE++  RN+V SL
Sbjct: 272 IEQEIKIHSFLEKTK-----NIRKNASDLP-------------EDLLKEKEIQRNRVKSL 313

Query: 315 IKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFP 374
           IK+++  +A  +V   D +K W Q+ Q K+GSRLI+LLI+TAY++ P ++  D  PD+ P
Sbjct: 314 IKRKRLFEAAKLVTSED-SKSWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPPDVRP 372

Query: 375 AFKHTLKTISND-SNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
           AF+H  K ++N+      +RYGVIECDP++ KG++++AR M+IPY+PML+PP NW GYDK
Sbjct: 373 AFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKGYDK 432

Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
           G YLFLPSYVMR HG+++Q+DA++  P  Q+  +FEALNTLG+TKWR+N+ VLGV++ +W
Sbjct: 433 GGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVVENLW 492

Query: 494 ANGGRVADLVDRDDV 508
           A+GG +  LV+ DDV
Sbjct: 493 ASGGNIGGLVNCDDV 507


>emb|CAC95021.2| chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score =  374 bits (960), Expect = e-102
 Identities = 186/375 (49%), Positives = 253/375 (66%), Gaps = 18/375 (4%)

Query: 135 KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAA 194
           +Y MLRRRQIK ETEAWE+   EY+EL  +M E+KLAPNLPY+K L LGWFEPL+ AI  
Sbjct: 138 RYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEK 197

Query: 195 DQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEA 254
           +Q      K R + AP+ + LP D MAVI MHKLMGLLM         +V+QAA QIG A
Sbjct: 198 EQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMA 257

Query: 255 IEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASL 314
           +E+E RI+ F+EKTK  K   H +               A+  E ++KE   LR +V SL
Sbjct: 258 VENEVRIHNFLEKTK--KLQKHMTG--------------AQSQEDMSKETMILRKRVKSL 301

Query: 315 IKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFP 374
           IK+ +  +   ++K  ++ + WG++ Q K+G RL++LL ETAY++ P ++  D  PDI P
Sbjct: 302 IKRNRVVEVRKLMKS-EEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRP 360

Query: 375 AFKHTLKTISND-SNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
           AF+H  K  + D   N  ++YGVIECDP++  G+++T + M+IPY+PMLVPP  W GYDK
Sbjct: 361 AFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDK 420

Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
           G YLFLPSY+MR HG+++Q+DA++  P  Q+  ++EAL+TLG+TKWRVNK +L V++ IW
Sbjct: 421 GGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIW 480

Query: 494 ANGGRVADLVDRDDV 508
           A GG +A LVDR DV
Sbjct: 481 AGGGNIAGLVDRKDV 495


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 871,678,947
Number of Sequences: 2540612
Number of extensions: 37153592
Number of successful extensions: 166547
Number of sequences better than 10.0: 400
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 164504
Number of HSP's gapped (non-prelim): 1602
length of query: 515
length of database: 863,360,394
effective HSP length: 133
effective length of query: 382
effective length of database: 525,458,998
effective search space: 200725337236
effective search space used: 200725337236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)