BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144724.7 - phase: 0 /pseudo
(1419 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP52327.1| putative retroelement [Oryza sativa (japonica cul... 372 e-101
gb|AAP52880.1| putative retroelement [Oryza sativa (japonica cul... 370 e-100
gb|AAM74400.1| Putative retroelement [Oryza sativa (japonica cul... 370 e-100
gb|AAV25053.1| putative polyprotein [Oryza sativa (japonica cult... 369 e-100
gb|AAV25052.1| putative polyprotein [Oryza sativa (japonica cult... 369 e-100
gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica] 367 1e-99
gb|AAP52970.1| putative retroelement [Oryza sativa (japonica cul... 367 2e-99
gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-... 367 2e-99
gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-... 367 2e-99
gb|AAP52945.1| putative retroelement [Oryza sativa (japonica cul... 367 2e-99
gb|AAP52863.1| putative retroelement [Oryza sativa (japonica cul... 367 2e-99
gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cult... 367 2e-99
emb|CAE02128.2| OSJNBa0035M09.12 [Oryza sativa (japonica cultiva... 366 3e-99
gb|AAV32173.1| putative polyprotein [Oryza sativa (japonica cult... 366 3e-99
gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-... 365 5e-99
gb|AAV24913.1| putative polyprotein [Oryza sativa (japonica cult... 365 8e-99
ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultiva... 364 1e-98
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 364 1e-98
ref|NP_909555.1| putative polyprotein [Oryza sativa] gi|14018099... 363 2e-98
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 361 1e-97
>gb|AAP52327.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531476|ref|NP_920040.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881618|gb|AAM01019.1| Putative retroelement [Oryza
sativa]
Length = 1475
Score = 372 bits (956), Expect = e-101
Identities = 230/643 (35%), Positives = 336/643 (51%), Gaps = 37/643 (5%)
Query: 16 RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKVRLTTHMLAEEAEYWWT 75
+L FLR PPT++ +P A W+ +E+ + +D +KV TH L A WW
Sbjct: 91 KLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWD 150
Query: 76 NAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK*GSISVAEYAAKFEKLS 135
N G VTWA+F F + P+ + +K+ F L G+ +V EY +F +L+
Sbjct: 151 NHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLT 209
Query: 136 RFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVHKCRKFDDAGRVKANYY 195
R+ P + DA K KF +GL ++ + + DF+ LV K + +D
Sbjct: 210 RYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQ-------- 259
Query: 196 KAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-----------CGTLGHY 244
+ + +++ K P +R + G P+ ++ YR G+ H+
Sbjct: 260 RNKMDRKRKATQFRAPQGSHQRPRFTPGQQGGPTTMIVRQYRPFNPSNFPQGSSGSQNHH 319
Query: 245 ANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGHISTKCTKPKKAA---- 296
+ + ++G A K+ A+ +C+NCGE GH + KC KP++A
Sbjct: 320 GGQSNRGAAPRPPMAPAQSGPSAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFI 379
Query: 297 -GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLLR 355
+V +AEE + ++ G +NS I + D GATHSFIS V L+ L
Sbjct: 380 QARVNHASAEEAQAAPEVVLGTFPVNSIPAIVLFDSGATHSFISKKFVGMHGLIREKLST 439
Query: 356 GMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSINC 415
M + TP S + F + F +L+ L K +DVI GMDWL F I+C
Sbjct: 440 PMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDC 498
Query: 416 LTKSVTFSKPVEKLDRKFLTAEQVKKSLDGEACVFMMFASLKENSEKGVGDLPIVQE--- 472
++VT + K + + + K+ + + E + + + D+PIV E
Sbjct: 499 ANRTVTLTNEKGKTV-VYKSPDSPKQGVSLNQIEAEIPVDTVEKNLRKLEDIPIVSEYPE 557
Query: 473 -FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFIRPSV 531
FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+KKQ++E L+K +IRPS
Sbjct: 558 VFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPST 617
Query: 532 SPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKIDFRS 591
SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL DQL GA+VFSKID RS
Sbjct: 618 SPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRS 677
Query: 592 GYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
GYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 678 GYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 720
>gb|AAP52880.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532582|ref|NP_920593.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|15217199|gb|AAK92543.1| Putative retroelement [Oryza
sativa]
Length = 1773
Score = 370 bits (950), Expect = e-100
Identities = 238/660 (36%), Positives = 349/660 (52%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 331 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 390
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 391 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 449
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 450 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 507
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D + + +++ K P +R + G P+ ++ +R
Sbjct: 508 KAIRQEDQ--------RNKIDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPF 559
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + ++G A K+ A+ +C+NCGE GH
Sbjct: 560 NPSNFHQGTSGSQNHHGGQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGH 619
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 620 FADKCPKPRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFIS 679
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V R L L M + TP S + SF + + F +L+ L K +DV
Sbjct: 680 KKFVGRYGLRKEELSTPMRVHTPGNSSTSVSFSPSVL-IEIQRSPFLANLILLESKDLDV 738
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C ++VT + E + K L + + SL+ + + ++++
Sbjct: 739 ILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGVSLN-QIETEIPVDTVEK 797
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 798 NLRK-LEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 856
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 857 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 916
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 917 FDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 976
>gb|AAM74400.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1300
Score = 370 bits (950), Expect = e-100
Identities = 238/660 (36%), Positives = 349/660 (52%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 331 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 390
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 391 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 449
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 450 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 507
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D + + +++ K P +R + G P+ ++ +R
Sbjct: 508 KAIRQEDQ--------RNKIDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPF 559
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + ++G A K+ A+ +C+NCGE GH
Sbjct: 560 NPSNFHQGTSGSQNHHGGQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGH 619
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 620 FADKCPKPRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFIS 679
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V R L L M + TP S + SF + + F +L+ L K +DV
Sbjct: 680 KKFVGRYGLRKEELSTPMRVHTPGNSSTSVSFSPSVL-IEIQRSPFLANLILLESKDLDV 738
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C ++VT + E + K L + + SL+ + + ++++
Sbjct: 739 ILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGVSLN-QIETEIPVDTVEK 797
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 798 NLRK-LEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 856
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 857 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 916
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 917 FDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 976
>gb|AAV25053.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1777
Score = 369 bits (948), Expect = e-100
Identities = 236/660 (35%), Positives = 347/660 (51%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 331 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 390
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 391 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 449
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 450 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 507
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D + + +++ K P +R + G P+ ++ +R
Sbjct: 508 KAIRQEDQ--------RNKMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPF 559
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + ++G A K+ A+ +C+NCGE GH
Sbjct: 560 NPSNFHQGTSGSQNHHGGQLNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGH 619
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 620 FADKCPKPRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFIS 679
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L+ L M + TP S + F + F +L+ L K +DV
Sbjct: 680 KKFVGMHGLIREELSTPMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDV 738
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C +++VT + E + K L + + SL+ + + ++++
Sbjct: 739 ILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGVSLN-QIETEIPVDTVEK 797
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 798 NLRK-LEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 856
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 857 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 916
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 917 FDQLKGARVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 976
>gb|AAV25052.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1777
Score = 369 bits (948), Expect = e-100
Identities = 236/660 (35%), Positives = 347/660 (51%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 331 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 390
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 391 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 449
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 450 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 507
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D + + +++ K P +R + G P+ ++ +R
Sbjct: 508 KAIRQEDQ--------RNKMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPF 559
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + ++G A K+ A+ +C+NCGE GH
Sbjct: 560 NPSNFHQGTSGSQNHHGGQLNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGH 619
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 620 FADKCPKPRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFIS 679
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L+ L M + TP S + F + F +L+ L K +DV
Sbjct: 680 KKFVGMHGLIREELSTPMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDV 738
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C +++VT + E + K L + + SL+ + + ++++
Sbjct: 739 ILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGVSLN-QIETEIPVDTVEK 797
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 798 NLRK-LEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 856
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 857 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 916
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 917 FDQLKGARVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 976
>gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica]
Length = 1521
Score = 367 bits (943), Expect = 1e-99
Identities = 234/647 (36%), Positives = 341/647 (52%), Gaps = 45/647 (6%)
Query: 16 RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKVRLTTHMLAEEAEYWWT 75
+L FLR PPT++ +P A W+ +E+ + +D +KV TH L A WW
Sbjct: 91 KLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWD 150
Query: 76 NAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK*GSISVAEYAAKFEKLS 135
N G VTWA+F F + P+ + +K+ F L G+ +V EY +F +L+
Sbjct: 151 NHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLA 209
Query: 136 RFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVHKCRKFDDAGRVKANYY 195
R+ P + DA K KF +GL ++ + + DF+ LV K + +D
Sbjct: 210 RYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQ-------- 259
Query: 196 KAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-----------CGTLGHY 244
+ + +++ K P +R + G P+ ++ +R G+ H+
Sbjct: 260 RNKMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGSSGSQNHH 319
Query: 245 ANDCKKDISCHKC---GKAGHKAAECKDVA-RDVTCYNCGEKGHISTKCTKPKKAA---- 296
+ + + ++G A K+ + +C+NCGE GH + KC KP++A
Sbjct: 320 GSQPNRGAAPRPPMAPAQSGQPAQAKKETGVKPGSCFNCGELGHFADKCPKPRRAGPRFI 379
Query: 297 -GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLLR 355
+V +AEE + ++ G +NS + D GATHSFIS V L L
Sbjct: 380 QARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELRT 439
Query: 356 GMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSINC 415
M + TP S + SF + + F +L+ L K +DVI GMDWL F I+C
Sbjct: 440 PMRVHTPGNSSTSVSFSPSVL-IEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDC 498
Query: 416 LTKSVTFSKPV-EKLDRKFLTAEQVKKSL---DGEACVFMMFASLKENSEKGVGDLPIVQ 471
++VT + E + K L + + SL + E V M +L++ + D+PIV
Sbjct: 499 ANRTVTLTNEKGETVVHKSLVSPKQGASLNQIEAEIPVDTMEKNLRK-----LEDIPIVC 553
Query: 472 E----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFI 527
E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+KKQ++E L+K +I
Sbjct: 554 EYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYI 613
Query: 528 RPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKI 587
RPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL DQL GA+VFSKI
Sbjct: 614 RPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKI 673
Query: 588 DFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
D RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 674 DLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 720
>gb|AAP52970.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532762|ref|NP_920683.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|20042987|gb|AAM08795.1| Putative retroelement [Oryza
sativa]
Length = 1785
Score = 367 bits (942), Expect = 2e-99
Identities = 237/660 (35%), Positives = 346/660 (51%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 339 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 398
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 399 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 457
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 458 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 515
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D KA + +G R + G P+ ++ +R
Sbjct: 516 KAIRQEDQRNKMDRKRKAAQFRSNQG--------SQHRPRFTPGQQGGPTTMIVRQHRPF 567
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + + ++G A K+ A+ +C+NCGE GH
Sbjct: 568 NPSNFHQGTSGSQNHHGSQPNRGTAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGH 627
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 628 FADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFIS 687
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L+ L M + TP S + F + F +L+ L K +DV
Sbjct: 688 KKFVGMHGLIREELSTPMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDV 746
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C +++VT + E + K L + + SL+ + + ++++
Sbjct: 747 ILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGVSLN-QIETEIPVDTVEK 805
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 806 NLRK-LEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 864
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 865 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 924
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 925 FDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 984
>gb|AAX95203.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1566
Score = 367 bits (942), Expect = 2e-99
Identities = 234/660 (35%), Positives = 348/660 (52%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 382 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 441
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 442 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 500
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 501 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 558
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D + + +++ K P +R + G P+ ++ +R
Sbjct: 559 KAIRQEDQ--------RNKMDRKRKAAQFRAPQGSHQRPRLTPGQQGGPTTMIVRQHRPF 610
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + + ++G A K+ A+ +C+NCGE GH
Sbjct: 611 NPSNFHQGTSGSQNHHGSQPNRGTAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGH 670
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 671 FADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFIS 730
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L+ L M + TP S + F + F +L+ L K +DV
Sbjct: 731 KKFVGMHGLIREELSTPMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDV 789
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C ++VT + E + K L + + SL+ + + ++++
Sbjct: 790 ILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGVSLN-QIETEIPVDTVEK 848
Query: 459 NSEKGVGDLPIVQEFPE----DITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E+PE D+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 849 NLRK-LEDIPIVCEYPEVFLEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 907
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 908 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 967
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSK+D RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 968 FDQLKGAKVFSKVDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 1027
>gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1723
Score = 367 bits (942), Expect = 2e-99
Identities = 231/644 (35%), Positives = 338/644 (51%), Gaps = 39/644 (6%)
Query: 16 RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKVRLTTHMLAEEAEYWWT 75
+L FLR PPT++ +P A W+ +E+ + +D +KV TH L A WW
Sbjct: 293 KLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWD 352
Query: 76 NAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK*GSISVAEYAAKFEKLS 135
N G VTWA+F F + P+ + +K+ F L G+ +V EY +F +L+
Sbjct: 353 NHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLA 411
Query: 136 RFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVHKCRKFDDAGRVKANYY 195
R+ P + DA K KF +GL ++ + + DF+ LV K + +D
Sbjct: 412 RYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQ-------- 461
Query: 196 KAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-----------CGTLGHY 244
+ + +++ K P +R + G P+ ++ +R G+ H+
Sbjct: 462 RNKMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFPQGASGSQNHH 521
Query: 245 ANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGHISTKCTKPKKAA---- 296
+ + ++G A K+ A+ +C+NCGE GH + KC KP++A
Sbjct: 522 RGQSNRGAAPRPPMAPAQSGPLAQAKKETGAKPGSCFNCGELGHFADKCPKPRRARPRFV 581
Query: 297 -GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLLR 355
+V +AEE + ++ G +NS + D GATHSFIS V L L
Sbjct: 582 LARVNHASAEEAQAAPEVVLGTFPVNSIPTTVLFDSGATHSFISKKFVGMYGLRKEELST 641
Query: 356 GMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSINC 415
M + TP S + SF + + F +L+ L K +DVI GMDWL F I+C
Sbjct: 642 PMRVHTPGNSSTSVSFSPSVL-IEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDC 700
Query: 416 LTKSVTFSKPVEKLDRK-FLTAEQVKKSLDGEACVFMMFASLKENSEKGVGDLPIVQE-- 472
++VT + EK + + + + K+ + + E + K + D+PIV E
Sbjct: 701 ANRTVTLTN--EKGETVVYKSPDSPKQGVSLNQIEAEIPVDTVEKNLKKLEDIPIVSEYP 758
Query: 473 --FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFIRPS 530
FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+KKQ++E L+K +IRPS
Sbjct: 759 EVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPS 818
Query: 531 VSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKIDFR 590
SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL DQL GA+VFSKID R
Sbjct: 819 TSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLR 878
Query: 591 SGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
SGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 879 SGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 922
>gb|AAP52945.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532712|ref|NP_920658.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881702|gb|AAM01103.1| Putative retroelement [Oryza
sativa] gi|15217244|gb|AAK92588.1| Putative retroelement
[Oryza sativa]
Length = 1777
Score = 367 bits (941), Expect = 2e-99
Identities = 237/660 (35%), Positives = 347/660 (51%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 331 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 390
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 391 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 449
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 450 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 507
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D KA + +G +R + G P+ ++ +R
Sbjct: 508 KAIRQEDQRNKMDRKRKAAQFRAHQG--------SHQRPRFTPGQQGGPTTMIVRQHRPF 559
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + + ++G A K+ A+ +C+NCGE GH
Sbjct: 560 NPSNFHQGTSGSQNHHGSQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGH 619
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 620 FADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFIS 679
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L+ L M + TP S + F + F +L+ L K +DV
Sbjct: 680 KKFVGMHGLIREELSTPMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDV 738
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C +++VT + E + K L + + SL+ + + ++++
Sbjct: 739 ILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGVSLN-QIETEIPVDTVEK 797
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 798 NLRK-LEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 856
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 857 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 916
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 917 FDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 976
>gb|AAP52863.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532548|ref|NP_920576.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|15217216|gb|AAK92560.1| Putative retroelement [Oryza
sativa]
Length = 1714
Score = 367 bits (941), Expect = 2e-99
Identities = 237/660 (35%), Positives = 347/660 (51%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 268 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 327
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 328 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 386
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 387 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 444
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D KA + +G +R + G P+ ++ +R
Sbjct: 445 KAIRQEDQRNKMDRKRKAAQFRAHQG--------SHQRPRFTPGQQGGPTTMIVRQHRPF 496
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + + ++G A K+ A+ +C+NCGE GH
Sbjct: 497 NPSNFHQGTSGSQNHHGSQPNRGAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGH 556
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 557 FADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFIS 616
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L+ L M + TP S + F + F +L+ L K +DV
Sbjct: 617 KKFVGMHGLIREELSTPMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDV 675
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C +++VT + E + K L + + SL+ + + ++++
Sbjct: 676 ILGMDWLTKFKGVIDCASRTVTLTNEKGETVVYKSLVSPKKGVSLN-QIETEIPVDTVEK 734
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 735 NLRK-LEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 793
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 794 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 853
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 854 FDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 913
>gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532182|ref|NP_920393.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|23266283|gb|AAN16322.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1796
Score = 367 bits (941), Expect = 2e-99
Identities = 237/660 (35%), Positives = 348/660 (51%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 350 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 409
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 410 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 468
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 469 GNRTVTEYLQEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 526
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D + + +++ K P +R + G P+ ++ +R
Sbjct: 527 KAIRQEDQ--------RNKMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPF 578
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + ++G A K+ A+ +C+NCGE GH
Sbjct: 579 NSSNFHQGSSGSQNHHGGQPNRGAAPRPPMAPAQSGPSAQAKKETGAKPGSCFNCGELGH 638
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 639 FADKCPKPRRAGPRFIQARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFIS 698
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L L M + TP S + SF + + F +L+ L K +DV
Sbjct: 699 KKFVGMYGLRKEELSTPMRVHTPGNSSTSVSFSPSVL-IEIQRSPFLANLILLESKDLDV 757
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C ++VT + E + K L + + SL+ + + ++++
Sbjct: 758 ILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKQGVSLN-QIEAEIPVDTVEK 816
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
N K + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 817 NLRK-LEDIPIVCEYPEVFPEDLTIMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 875
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 876 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 935
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 936 FDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 995
>emb|CAE02128.2| OSJNBa0035M09.12 [Oryza sativa (japonica cultivar-group)]
gi|50928565|ref|XP_473810.1| OSJNBa0035M09.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1435
Score = 366 bits (940), Expect = 3e-99
Identities = 236/660 (35%), Positives = 343/660 (51%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 75 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 134
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 135 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 193
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 194 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 251
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D KA + +G +R + G P+ ++ +R
Sbjct: 252 KAIRQEDQRNKMDRKRKAAQFRAHQG--------SHQRPRFTPGQQGGPTTMIVRQHRPF 303
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + + ++G A K+ A+ +C+NCGE GH
Sbjct: 304 NPSNFHQGSSGSQNHHGSQPNRGTAPRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGH 363
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 364 FADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFIS 423
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L+ L M + TP S + F + F +L+ L K +DV
Sbjct: 424 KKFVGMHGLIREELSTPMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDV 482
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPV-EKLDRKFLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C ++VT + E + K L + + SL+ + +E
Sbjct: 483 ILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSLVSPKKGASLNQIETKIPV--DTEE 540
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
+ + + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 541 KNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 600
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 601 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 660
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 661 FDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 720
>gb|AAV32173.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1632
Score = 366 bits (940), Expect = 3e-99
Identities = 232/660 (35%), Positives = 345/660 (52%), Gaps = 40/660 (6%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 363 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKV 422
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 423 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 481
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 482 GNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVD 539
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-- 237
K + +D + + +++ K P +R + G P+ ++ +R
Sbjct: 540 KAIRQEDQ--------RNKMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPF 591
Query: 238 ---------CGTLGHYANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGH 284
G+ H+ + + ++G A K+ A+ +C+NCGE GH
Sbjct: 592 NSSNFPQGASGSQNHHGGQPNRGAAPRPPMAPAQSGPSAQVKKETGAKPGSCFNCGELGH 651
Query: 285 ISTKCTKPKKAA-----GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFIS 339
+ KC KP++A +V +AEE + ++ G +NS + D GATHSFIS
Sbjct: 652 FADKCPKPRRAGPRFIQARVNHASAEEAQAATEVVLGTFPVNSIPATVLFDSGATHSFIS 711
Query: 340 VSCVKRLKLVVTPLLRGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDV 399
V L+ L M + TP S + F ++ + F +L+ L K +DV
Sbjct: 712 KKFVGMHGLIREELSTPMRVHTPGNSSTSVQFSPSRT-IEIQRSTFLANLILLESKDLDV 770
Query: 400 IFGMDWLLFFGVSINCLTKSVTFSKPVEKLDRK-FLTAEQVKKSLDGEACVFMMFASLKE 458
I GMDWL F I+C ++VT + EK + + + + K+ + + E
Sbjct: 771 ILGMDWLTKFKGVIDCANRTVTLTN--EKGETVVYKSPDSPKQGVSLNQIEAEIPVDTVE 828
Query: 459 NSEKGVGDLPIVQE----FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGEL 514
+ + + D+PIV E FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+
Sbjct: 829 KNLRKLEDIPIVSEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEV 888
Query: 515 KKQLEELLEKQFIRPSVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDL 574
KKQ++E L+K +IRPS SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL
Sbjct: 889 KKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDL 948
Query: 575 MDQLVGAEVFSKIDFRSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
DQL GA+VFSKID RSGYH R++ EDI KT F TRYG YE VM FG+ + P N+
Sbjct: 949 FDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTHAPAFFMNL 1008
>gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1760
Score = 365 bits (938), Expect = 5e-99
Identities = 231/645 (35%), Positives = 338/645 (51%), Gaps = 28/645 (4%)
Query: 1 HAAIGHRSEGKVEDR-RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKV 59
HA H+ G + +L FLR PPT++ +P A W+ +E+ + +D +KV
Sbjct: 346 HAEQQHQQFGPPPPQSKLPEFLRVRPPTFSNTTNPMEANDWLHAIEKKLNLLQCNDQEKV 405
Query: 60 RLTTHMLAEEAEYWWTNAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK* 119
TH L A WW N G VTWA+F F + P+ + +K+ F L
Sbjct: 406 AFATHQLQGPASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 464
Query: 120 GSISVAEYAAKFEKLSRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVH 179
G+ +V EY +F +L+R+ P + DA K KF +GL ++ + + DF+ LV
Sbjct: 465 GNRTVTEYLHEFNRLTRYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYVDFERLVD 522
Query: 180 KCRKFDDAGRVKANYYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYRCG 239
K + +D KA + +G +R G P+ ++ YR
Sbjct: 523 KAIRQEDQRNKMDRKRKAAQFRAHQG--------SHQRPHFTPGQQGGPTTMIVRQYRPF 574
Query: 240 TLGHYANDCKKDISCHKCGKAGHKAAECKDVARDVTCYNCGEKGHISTKCTKPKKAA--- 296
++ + ++ ++G A + A+ +C+NCGE GH + KC KP++A
Sbjct: 575 NPSNFP---RAPVAVRTTMESGPSAQAKETGAKPGSCFNCGELGHFADKCPKPRRAGPRF 631
Query: 297 --GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLL 354
+V ++AEE + ++ G +NS + D GATHSFIS V L+ L
Sbjct: 632 IQARVNHVSAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELS 691
Query: 355 RGMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSIN 414
M + TP S + F + F +L+ L K +DVI GMDWL F I+
Sbjct: 692 TLMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVID 750
Query: 415 CLTKSVTFSKPVEKLDRK-FLTAEQVKKSLDGEACVFMMFASLKENSEKGVGDLPIVQE- 472
C ++VT + EK + + + + K+ + + E + + D+PIV E
Sbjct: 751 CANRTVTLTN--EKGETVVYKSPDSPKQGVSLNQIEAEIPVDTVEKKLRKLEDIPIVCEY 808
Query: 473 ---FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFIRP 529
FPED+T +P +RE+EF IDL PG++PI+ PY M+A+EL E+KKQ++E L+K +IRP
Sbjct: 809 PEVFPEDLTTMPPKREIEFRIDLAPGIAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRP 868
Query: 530 SVSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKIDF 589
S SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL DQL GA+VFSKID
Sbjct: 869 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDL 928
Query: 590 RSGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
RSGYH R++ EDI KT F TRYG YE VM F + N P N+
Sbjct: 929 RSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFRLTNAPAFFMNL 973
>gb|AAV24913.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1850
Score = 365 bits (936), Expect = 8e-99
Identities = 229/644 (35%), Positives = 338/644 (51%), Gaps = 39/644 (6%)
Query: 16 RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKVRLTTHMLAEEAEYWWT 75
+L FLR PPT++ +P A W+ +E+ + +D +KV TH L A WW
Sbjct: 323 KLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWD 382
Query: 76 NAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK*GSISVAEYAAKFEKLS 135
N G VTWA+F F + P+ + +K+ F L G+ +V EY +F +L+
Sbjct: 383 NHMATRP-PGTEVTWAEFCCSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLA 441
Query: 136 RFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVHKCRKFDDAGRVKANYY 195
R+ P + DA K KF +GL ++ + + DF+ LV K + +D
Sbjct: 442 RYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQ-------- 491
Query: 196 KAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-----------CGTLGHY 244
+ + +++ K P +R + G P+ ++ +R G+ H+
Sbjct: 492 RNKMDRKRKAAQFRAPPGSHQRPRFAPGQQGGPTTMIVRQHRPFNPSNFPQGASGSQNHH 551
Query: 245 ANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGHISTKCTKPKKAA---- 296
+ + ++G A K+ A+ +C+NCGE GH + KC KP++A
Sbjct: 552 GGQSNRGAAPRPPMAPAQSGPPAQSKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFI 611
Query: 297 -GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLLR 355
+V +AEE + ++ G +NS + D GATHSF+S V L L
Sbjct: 612 QARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFVSKKFVGMHGLRKEELST 671
Query: 356 GMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSINC 415
M + TP S + SF + + F +L+ L K +DVI GMDWL F I+C
Sbjct: 672 PMRVHTPGNSSTSVSFSPSVL-IEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDC 730
Query: 416 LTKSVTFSKPVEKLDRK-FLTAEQVKKSLDGEACVFMMFASLKENSEKGVGDLPIVQE-- 472
++VT + EK + + + + K+ + + E + + + D+PIV E
Sbjct: 731 ANRTVTLTN--EKGETVVYKSPDSPKQGVSLNQIETEIPVDTVEKNLRKLEDIPIVCEYP 788
Query: 473 --FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFIRPS 530
FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+KKQ++E L+K +IRPS
Sbjct: 789 EVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPS 848
Query: 531 VSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKIDFR 590
SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL DQL GA+VFSKID R
Sbjct: 849 TSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLR 908
Query: 591 SGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
SGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 909 SGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 952
>ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultivar-group)]
gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1447
Score = 364 bits (935), Expect = 1e-98
Identities = 223/642 (34%), Positives = 331/642 (50%), Gaps = 46/642 (7%)
Query: 16 RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKVRLTTHMLAEEAEYWWT 75
+L FLR PPT++ +P A W+ +E+ + ++ +KV +H L A WW
Sbjct: 58 KLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWD 117
Query: 76 NAK-GRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK*GSISVAEYAAKFEKL 134
+ + GR E GE +TW +F A F + + P + K+ F L GS SV EY F +L
Sbjct: 118 HFRQGRAE--GEPITWQEFTAAFKKTHIPAGVVALKKREFRALNQGSRSVTEYLHDFNRL 175
Query: 135 SRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVHKC-RKFDDAGRVKAN 193
+R+ P + D + KF GL ++ + + DF LV K R+ D R++
Sbjct: 176 ARYAPEDVRTDE--ERQEKFLEGLNDELSYALMSTDFWDFQQLVDKAIRQEDKYNRMEQK 233
Query: 194 YYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYRCGTLGHYANDCKKDIS 253
+A K +G + GGS + + + G+ ND + ++
Sbjct: 234 MRRAAQFKAQQGSNQRPRLVTGPQAPSYSQGGSSSVIRPQRQFYNNNTGNRGNDNRNMVA 293
Query: 254 CHKCGKAGHKAAECKDVARDVTCYNCGEKGHISTKCTKPKKAAGKVFALN---------- 303
A ++ + ++ V C+NCG+ GH + KC KP++ + N
Sbjct: 294 RPAATSAQNQPVRREQGSKPVVCFNCGDPGHYADKCPKPRRVKNALAPNNSNVPAPKARV 353
Query: 304 ----AEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLLRGMVI 359
A E + +++ G +NS + D GATHSF+S S + V L R +++
Sbjct: 354 NHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLV 413
Query: 360 DTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSINCLTKS 419
+TP +T + C + V F L+ L K +DVI GMDWL I+C +
Sbjct: 414 NTPGNQVFSTQY-CPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRK 472
Query: 420 VTFSKPVEKLDRKFLTAEQVKKSLDGEACVFMMFASLKEN---SEKGVGDLPIVQE---- 472
VT + S +GE F +F+ ++ + ++PIVQ+
Sbjct: 473 VTLT------------------SSNGETVSFFVFSPKSHGVNLNQVALQEIPIVQDYPDV 514
Query: 473 FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFIRPSVS 532
FPED+ +P +R++EF IDLVPG +PI PY M+A+EL E+K+Q+++LL+K +IRPS S
Sbjct: 515 FPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSTS 574
Query: 533 PWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKIDFRSG 592
PWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL DQL GA VFSKID RSG
Sbjct: 575 PWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSG 634
Query: 593 YHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
YH R++ EDI KT F TRYG +E VM FG+ N P N+
Sbjct: 635 YHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNL 676
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 364 bits (934), Expect = 1e-98
Identities = 225/642 (35%), Positives = 331/642 (51%), Gaps = 46/642 (7%)
Query: 16 RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKVRLTTHMLAEEAEYWWT 75
+L FLR PPT++ +P A W+ +E+ + ++ +KV +H L A WW
Sbjct: 322 KLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWD 381
Query: 76 NAK-GRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK*GSISVAEYAAKFEKL 134
+ + GR E GE +TW +F A F + + P + K+ F L GS SV EY F +L
Sbjct: 382 HFRQGRAE--GEPITWQEFTAAFRKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRL 439
Query: 135 SRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVHKC-RKFDDAGRVKAN 193
+R+ P + D + KF GL ++ + + RDF LV K R+ D R++
Sbjct: 440 ARYAPEDVRTDE--ERQEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQK 497
Query: 194 YYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYRCGTLGHYANDCKKDIS 253
+A K +G + GGS + + + + ND + ++
Sbjct: 498 KRRAAQFKAQQGSNQRPRLVTGPQVPSYPQGGSSSVVRPQRQFYNNNTSNRGNDNRNVVA 557
Query: 254 CHKCGKAGHKAAECKDVARDVTCYNCGEKGHISTKCTKPKKAAG--------------KV 299
A ++ + ++ V C+NCG+ GH + KC KP++ +V
Sbjct: 558 RPAATSAQNQPVRKEQGSKPVICFNCGDPGHYADKCPKPRRVKNAPAPNNSNVPAPKARV 617
Query: 300 FALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLLRGMVI 359
+ A E + +++ G +NS + D GATHSF+S S + V L R +++
Sbjct: 618 NHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFTSNHGMEVISLERPLLV 677
Query: 360 DTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSINCLTKS 419
+TP +T + C + V F L+ L K +DVI GMDWL I+C +
Sbjct: 678 NTPGNQVFSTQY-CPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSCHRGVIDCANRK 736
Query: 420 VTFSKPVEKLDRKFLTAEQVKKSLDGEACVFMMFASLKEN---SEKGVGDLPIVQE---- 472
VT + S +GE F M + ++ + ++PIVQ+
Sbjct: 737 VTLT------------------SSNGETVSFFMSSPKSHGVILNQVALQEIPIVQDYPDV 778
Query: 473 FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFIRPSVS 532
FPED+ +P +RE+EF IDLVPG +PI PY M+A+EL E+K+Q+E+LL+K +IRPS S
Sbjct: 779 FPEDLPGMPPKREIEFRIDLVPGTNPIHKRPYRMAANELVEVKRQVEDLLQKGYIRPSTS 838
Query: 533 PWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKIDFRSG 592
PWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL DQL GA VFSKID RSG
Sbjct: 839 PWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSG 898
Query: 593 YHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
YH R++ EDI KT F TRYG +E VM FG+ N P N+
Sbjct: 899 YHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNL 940
>ref|NP_909555.1| putative polyprotein [Oryza sativa] gi|14018099|gb|AAK52162.1|
putative polyprotein [Oryza sativa]
Length = 1461
Score = 363 bits (932), Expect = 2e-98
Identities = 231/644 (35%), Positives = 341/644 (52%), Gaps = 39/644 (6%)
Query: 16 RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKVRLTTHMLAEEAEYWWT 75
+L FLR PPT++ +P A W+ +E+ + +D +KV TH L A WW
Sbjct: 91 KLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNRLQCNDQEKVAFATHQLQGPASAWWD 150
Query: 76 NAKGRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK*GSISVAEYAAKFEKLS 135
N G VTWA+F F + P+ + +K+ F L G+ +V EY +F +L+
Sbjct: 151 NHMATRP-PGTEVTWAEFCRSFWKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLA 209
Query: 136 RFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVHKCRKFDDAGRVKANYY 195
R+ P + DA K KF +GL ++ + + DF+ LV K + +D
Sbjct: 210 RYAPEDVRTDA--EKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQ-------- 259
Query: 196 KAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYR-----------CGTLGHY 244
+ + +++ K P +R + G P+ ++ +R G+ H+
Sbjct: 260 RNKMDRKRKAAQFRAPQGSHQRPRFAPGQQGGPTTMIVRQHRPFNPSNFPQGASGSQNHH 319
Query: 245 ANDCKKDISCHKC---GKAGHKAAECKDV-ARDVTCYNCGEKGHISTKCTKPKKAA---- 296
+ + ++G A K+ A+ +C+NCGE GH + KC KP++A
Sbjct: 320 GGQSNRGAASRPPMAPAQSGPPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFI 379
Query: 297 -GKVFALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLLR 355
+V +AEE + ++ G +NS + D GATHSFIS V L+ L
Sbjct: 380 QARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHLLIREELST 439
Query: 356 GMVIDTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSINC 415
M + TP S + F + F +L+ L K +DVI GMDWL F I+C
Sbjct: 440 PMRVHTPGNSSTSVQFS-PSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDC 498
Query: 416 LTKSVTF-SKPVEKLDRKFLTAEQVKKSLDGEACVFMMFASLKENSEKGVGDLPIVQE-- 472
++VT ++ E + K L + + SL+ + + ++++NS K + D+PIV E
Sbjct: 499 ANRTVTLINEKGETVVYKSLVSPKKGVSLN-QIEAEIPVDTVEKNSRK-LEDIPIVCEYP 556
Query: 473 --FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFIRPS 530
FPED+T +P +RE+EF IDL PG +PI+ PY M+A+EL E+KKQ++E L+K +IRPS
Sbjct: 557 EVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPS 616
Query: 531 VSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKIDFR 590
SP GAPV+ V+KKD + R+CVDY LN+VTIKN+YPL RIDDL DQL GA+VFSKID R
Sbjct: 617 TSPLGAPVIFVEKKDKTKRMCVDYHALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLR 676
Query: 591 SGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
SGYH R++ EDI KT F TRYG YE VM FG+ N P N+
Sbjct: 677 SGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNL 720
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 361 bits (926), Expect = 1e-97
Identities = 223/644 (34%), Positives = 331/644 (50%), Gaps = 50/644 (7%)
Query: 16 RLDRFLRNNPPTYNGRFDPEGAQTWVQGMERIFCAMVTSDDQKVRLTTHMLAEEAEYWWT 75
+L FLR PPT++ +P A W+ +E+ + ++ +KV +H L A WW
Sbjct: 62 KLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWD 121
Query: 76 NAK-GRLEIVGEVVTWAKFKAEFLRKYFPEDLRTRKEVAFLNLK*GSISVAEYAAKFEKL 134
+ + GR GE +TW +F A F + + P + K+ F L GS SV EY F +L
Sbjct: 122 HFRQGRAG--GEPITWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRL 179
Query: 135 SRFCPYIIAEDAMVSKCVKFESGLRPDIYQYMCVQEIRDFDTLVHKC-RKFDDAGRVKAN 193
+R+ P + D + KF GL ++ + + RDF LV K R+ D R++
Sbjct: 180 ARYAPEDVRTDE--ERQEKFLEGLNDELSYALMATDFRDFQQLVDKAIRQEDKYNRIEQK 237
Query: 194 YYKAQSEKRGKGHGVGKPYNKDKRKKREVGGGSKPSLADIKCYRCGTLGHYANDCKKDIS 253
+A K +G + GGS + + + ND + ++
Sbjct: 238 KRRAAQFKAQQGSNQRPRLITGPQAPSYPQGGSSSVARPQRQFYNNNTSNRGNDNRNMVA 297
Query: 254 CHKCGKAGHKAAECKDVARDVTCYNCGEKGHISTKCTKPKKAAG--------------KV 299
C ++ + ++ V C+NCG+ GH + KC KP++ +V
Sbjct: 298 CPAATPVQNQPVRKEQGSKPVICFNCGDPGHYADKCPKPRRVKNAPVPNNPNVPAPKARV 357
Query: 300 FALNAEEVEQPDNLIRGMCFINSTHLIGIIDIGATHSFISVSCVKRLKLVVTPLLRGMVI 359
+ A E + +++ G +NS + D GATHSF+S S + + V L R +++
Sbjct: 358 NHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLV 417
Query: 360 DTPARGSVTTSFMCAKCPVNFGNVDFELDLVCLPLKHMDVIFGMDWLLFFGVSINCLTKS 419
+TP +T + C + V F L+ L K +DVI GMDWL I+C +
Sbjct: 418 NTPGNQVFSTQY-CPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRK 476
Query: 420 VTFSKPVEKLDRKFLTAEQVKKSLDGEACVFMMFASLKEN-----SEKGVGDLPIVQE-- 472
VT + +GE F FAS ++ ++ + ++PIVQ+
Sbjct: 477 VTLTNS------------------NGETVSF--FASSPKSHGVVLNQVALQEIPIVQDYP 516
Query: 473 --FPEDITELPLEREVEFAIDLVPGMSPIWITPYPMSASELGELKKQLEELLEKQFIRPS 530
FPED+ +P +R++EF IDLVPG +PI PY M+A+EL E+KKQ+++LL+K +IRPS
Sbjct: 517 DVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPS 576
Query: 531 VSPWGAPVLLVKKKDGSVRLCVDYRQLNKVTIKNRYPLLRIDDLMDQLVGAEVFSKIDFR 590
SPWGAPV+ V+KKD + R+CVDYR LN+VTIKN+YPL RIDDL DQL GA VFSKID
Sbjct: 577 TSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLH 636
Query: 591 SGYHHNRVKAEDISKTVFRTRYGHYEYFVMQFGVYNVPGTSWNI 634
SGYH R++ EDI KT F TRYG +E VM FG+ N P N+
Sbjct: 637 SGYHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNL 680
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.350 0.157 0.564
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,129,287,571
Number of Sequences: 2540612
Number of extensions: 83029831
Number of successful extensions: 402284
Number of sequences better than 10.0: 20092
Number of HSP's better than 10.0 without gapping: 2655
Number of HSP's successfully gapped in prelim test: 17449
Number of HSP's that attempted gapping in prelim test: 361193
Number of HSP's gapped (non-prelim): 31290
length of query: 1419
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1278
effective length of database: 505,134,102
effective search space: 645561382356
effective search space used: 645561382356
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 82 (36.2 bits)
Medicago: description of AC144724.7