BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144724.6 + phase: 0
(1523 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 1005 0.0
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 792 0.0
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 736 0.0
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 714 0.0
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 708 0.0
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 707 0.0
gb|AAL66759.1| putative pol protein [Zea mays] 707 0.0
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 707 0.0
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 707 0.0
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 699 0.0
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 697 0.0
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 696 0.0
ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cu... 693 0.0
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 684 0.0
emb|CAE05094.3| OSJNBa0009K15.14 [Oryza sativa (japonica cultiva... 684 0.0
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 682 0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 682 0.0
gb|AAL35396.1| Opie2a pol [Zea mays] 676 0.0
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 676 0.0
ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (jap... 675 0.0
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 1005 bits (2598), Expect = 0.0
Identities = 608/1607 (37%), Positives = 883/1607 (54%), Gaps = 134/1607 (8%)
Query: 15 RPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKAQV 74
+ P+F+G+NY WK KM L++ +W+++ G A+ D + +
Sbjct: 10 KAPIFNGTNYSTWKIKMSTHLKAMSFHIWSIVYVGF--------AITGTPLTEIDHR-NL 60
Query: 75 LLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVF 134
LN++A L +L+ EE +RV A +W+ L HEGTS K+ ++ ++E F
Sbjct: 61 QLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETF 120
Query: 135 EMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRPMVTAITQAKDLK 194
M +E++++MY R IVN+++ LG Y+ + +K+LR LP + +VT + + D+
Sbjct: 121 YMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINS-DMS 179
Query: 195 SMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQEPQELEEVHEEEA 254
M L+G + +++ K +++ + K + V+D+ + E+ E +
Sbjct: 180 RMTPASLLGKINTNDMYKLKKKEMEEASP-SKKCIALQAEVEDKSKSKVNEVNE----DL 234
Query: 255 EDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADK--SQVTCYGCNKTGHFKNECPD 312
E+E+ L+++R ++ RR + R + +N +K S + C+ + GHF ++CP
Sbjct: 235 EEEMILLARRFNDLLERRKE-RGRGSNSNRRRNRRLNKTLSNLRCFEYGEKGHFASKCPS 293
Query: 313 -----------------IKKVQRKPPFKKKAMI-TWDDMEESDSQEDADTDMGLMAQSDD 354
+ K +K K +A I WD EES + ++ + G A S
Sbjct: 294 KDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDASSKK 353
Query: 355 EEEVI--IYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDES 412
++ V+ I + SL+ L L + S + LS+ + + + Y+E
Sbjct: 354 KKMVVVAIKEAPSLFAPL------------CLMAKGSSKVTSLSDSESDDDCDDVSYEE- 400
Query: 413 RKTIKILQDSHFDMSEKQ----REINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGF 468
+ + ++ H SEK+ + +N+ + + E++ N L E LK+
Sbjct: 401 --LVSMFEELHA-YSEKEIVKFKALNKDYASLDVLYEELKTSNERLTISHEKLKEAHDNL 457
Query: 469 IKSTETFQNI-------------------VGSQNKSTKKSGLGFKDPSKIIGSFVPKAKI 509
+ +T+ +I V S + ST L D S I
Sbjct: 458 LSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSCDDL--MDMPSPCSSSSSCVSI 515
Query: 510 RVKCCFCDKYGHNESVCHVKKK----FIKQNNLN--LSSERSHLNRSESSQKAEKAKKTC 563
+ E V + K F +N L+ LS +R LN+ +K KK
Sbjct: 516 CDASLVVENNEFKEQVAKLNKSLERCFKGKNTLDKILSEQRCILNKEGLGFIPKKGKKPS 575
Query: 564 FYCN---KSDHKRQNVTFRKD----LLEELTFKDPTLHG-LDSGCSRHMTGDRDCFLTFE 615
+ K + + V D L + ++ H LDSGC++HMTGDR F TFE
Sbjct: 576 HHATHFVKRNGRLMMVALLLDMWVPLYSVVNYRTGGSHWVLDSGCTQHMTGDRTMFTTFE 635
Query: 616 K--KDGGLVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVI 673
+ VTFG+N GK+ G G I N IENV V+ L NLLS+ Q+CD G
Sbjct: 636 VGGNEQEKVTFGDNSNGKVIGLGKIAISNDLSIENVSLVKSLNFNLLSVPQICDLGLSCA 695
Query: 674 FKPNICEVRQTSSNKLFFSGSRRKNLYVLELNDMPA--ESCFMSLEKDKWIWHKRAGHIS 731
F P V + G R NLY+++ N A ++C ++ W+WH+R H+
Sbjct: 696 FFPQEVIVSSLLDKSCVYKGFRYGNLYLVDFNSSEANLKTCLVAKTSLGWLWHRRLAHVG 755
Query: 732 MKTIAKLSQLDLVRGLPKISFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLF 791
M ++KLS+ DLV GL + FEKD++C AC GKQV S T +ST + LELLH+DLF
Sbjct: 756 MNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVACSHPTKSIMSTSRLLELLHMDLF 815
Query: 792 GPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRS 851
GP S+ G + VIVD++SR+TWV FL K E F+ F KR QNE ++ +RS
Sbjct: 816 GPTTYKSIGGNSHCLVIVDEYSRYTWVFFLHDKSIVAELFKKFAKRAQNEFSCTLVKIRS 875
Query: 852 DHGGEFENASFKTFFDENVFGCYCYILNNKEKLGKFDPKSDKAIFL--------GYSTTS 903
D+G EF+N + + + D+ + ++ G + K+ I + GY++ S
Sbjct: 876 DNGSEFKNTNIEDYCDDLGIKHELSATYSPQQNGVVERKNHTLIEMARTMLDKYGYASNS 935
Query: 904 KGYRVYNLKTQTVEISMHIIFDEYDEHS--------------------------KPKENE 937
K YRVYN VE + + FDE + KP E E
Sbjct: 936 KAYRVYNKNKGIVEETADVQFDETNGSQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVE 995
Query: 938 DTEVPTLQNVPVQNTENTVEKEDDQNAQDQSFQSPPRSWRMVG-DHPTDQIIGSTTDGVR 996
D + Q+ P + ++ + + + + Q PPR + DHP DQ++G GV+
Sbjct: 996 DKPSTSTQDEPSTSASSSQAQVEVEEEKAQDPPMPPRIHTALSKDHPIDQVLGDINKGVQ 1055
Query: 997 TRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTI 1054
TR + + +S ++PK ++E + D W+ AM EEL+ F RNKVW LV +D +
Sbjct: 1056 TRSRVASICEHYSFVSCLKPKHVDEVLCDPDWMNAMHEELNNFARNKVWILVERPRDHNV 1115
Query: 1055 IGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHK 1114
IGT+W+FRNK DE G VVRNKARLVAQG+ Q EG+D+ ETFAPVARLEAIRILLA+A+
Sbjct: 1116 IGTKWIFRNKQDENGLVVRNKARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFASCF 1175
Query: 1115 SIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRL 1174
IKLFQMDVKSAFLNG + E V+V QPPGF + + PNHV+KL+KALYGLKQAPRAWY+RL
Sbjct: 1176 DIKLFQMDVKSAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPRAWYERL 1235
Query: 1175 STFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEM 1234
FL+ F GK++TTLF K D + Q+YVDDIIFG+T C+EF ++M EFEM
Sbjct: 1236 RYFLLSKDFKIGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEM 1295
Query: 1235 SMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESG 1294
SM+GEL FFLGLQIKQ +G F+SQ KY+KD+LK++ + +AK + TPM + LD D+ G
Sbjct: 1296 SMIGELNFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDKGG 1355
Query: 1295 KSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDL 1354
K + K YR MIGSLLYLTASRPDI+F+V +CARFQ KE HL AVKRI RYL ++ +
Sbjct: 1356 KPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTI 1415
Query: 1355 GLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAE 1414
GLWY KG+ F LV Y D+DYA KV+RKSTSGSCQ LG++L+ WS +KQN++ALST EAE
Sbjct: 1416 GLWYPKGAKFKLVGYSDSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAE 1475
Query: 1415 YVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFI 1474
YVSA SCC+Q+LW++ L DY + +T P+ CDN AI ++ NP+QHSR+KHI+I+HHF+
Sbjct: 1476 YVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDNDRAIKIANNPVQHSRTKHIDIRHHFL 1535
Query: 1475 RDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKLLIMKNPN 1521
RDHV K +I +S + TE+QLADIFTKPL E RF L+ +L ++ N
Sbjct: 1536 RDHVTKCDIVISHIRTEDQLADIFTKPLNETRFCKLRNELNVIDFSN 1582
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 792 bits (2045), Expect = 0.0
Identities = 495/1293 (38%), Positives = 695/1293 (53%), Gaps = 150/1293 (11%)
Query: 366 LYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYD--ESRKTIKILQDSH 423
L +L+ + ++D C L + E++++ +L+ K D ES T + + S
Sbjct: 504 LEMELKELKEKFVHDRIGRCENCPILTSDNDELRQQVAMLRTKNDLLESFATKEPIHSSC 563
Query: 424 FDMSEKQREINRKQKGIMSVPS-EVQKENILLKKEVETLKKDLTGFIKSTETFQ------ 476
+ + + E+ + I S+ S + I LK ++E+ KK+ + +S E F
Sbjct: 564 ANCAILKTELKDAKTVIDSIKSIDSCSSCISLKVDLESAKKENSYLQQSLERFAQGKKKL 623
Query: 477 NIVGSQNK-STKKSGLGFK-------DPSKIIGSFVPKAKIRVKCCFCDKYGHNESVCHV 528
N++ Q+K S G+G+ +I+G ++ K G +
Sbjct: 624 NMILDQSKVSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPITFKSAGFIGNTSSS 683
Query: 529 KKKFIKQNNLNLSSERS--------------HLNRSESSQKAEKAKKTCFYCNKSDH--- 571
K + + ++S+ H ++ EK K C YC K+ H
Sbjct: 684 TPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLVS 743
Query: 572 -------KRQNVTFRKDLLEELTFKDPTLHG------LDSGCSRHMTGDRDCFLTFEKKD 618
+NV ++LLE L G +DSGCSRHMTG+ F + +
Sbjct: 744 ALERLEKSNKNVLGLEELLESLRGSSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRAS 803
Query: 619 GG-LVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPN 677
G +TFG+ G++ KGTI + +++V V LK+NLLS+SQLCD EV FK +
Sbjct: 804 GDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKD 863
Query: 678 ICEVRQTSSNKLFFSGSRRKNLYVLELNDM---PAESCFMSLEKDKWIWHKRAGHISMKT 734
V S + +F SR ++ + P+ S +D + WH+R GHI
Sbjct: 864 RSRVLDASESPVF-DISRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDH 922
Query: 735 IAKLSQLDLVRGLPKISFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPV 794
++++S +DL+RGLPK+ KD +C C GK SS K + + T P +LLH+D GP
Sbjct: 923 LSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPA 982
Query: 795 QTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDH- 853
+ S+ GK + W+ E F ++ + ++I + S+H
Sbjct: 983 RVQSVGGKWRKHLASFSLLLVVWLWSFLVLFEPFAVIMALNSKILH-LNLSVILLESNHQ 1041
Query: 854 ---------GGEFENAS------FKTFFDE---------NVFGCYCYILNNKEKLGKFDP 889
G E + +T DE C+I +N+ L
Sbjct: 1042 FSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFI-SNRVFLRTILH 1100
Query: 890 KSDKAIFLGYSTTSKGYRVYNLKTQTVEI---------SMHIIFDEYDEHSKP------- 933
K+ + G RV+ K ++ S+ IF Y HS+
Sbjct: 1101 KTPYELRFGRRPKVSHLRVFGCKCFVLKSGNLDKFESRSLDGIFLGYATHSRAYRVYVLS 1160
Query: 934 --KENEDTEV----------PTLQNVPVQNTENTVEKEDDQNAQDQSFQSP--------- 972
K E EV P + VP E+ ED + D S P
Sbjct: 1161 TNKIVETCEVTFDEASPGARPEISGVP---DESIFVDEDSDDDDDDSISPPLDSTPPVQE 1217
Query: 973 ---PRSWRMVGDHPT------DQIIGSTT----------------------DGVRTRLSF 1001
P + GD PT ++I G T+ + V S+
Sbjct: 1218 TGSPLTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSY 1277
Query: 1002 QDNNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVF 1061
+ N A ++ EPK++ A+ D++W+ AM EEL FERNKVW+LV ++IGT+WVF
Sbjct: 1278 ELVNSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFSVIGTKWVF 1337
Query: 1062 RNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQM 1121
+NKL E+G +VRNKARLVAQG+ Q EG+D++ETFAPVARLEAIRILLA+AA K KLFQM
Sbjct: 1338 KNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQM 1397
Query: 1122 DVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIEN 1181
DVKSAFLNG + EEVYV QPPGF N + PNHVFKL KALYGLKQAPRAWY+RL TFL++N
Sbjct: 1398 DVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQN 1457
Query: 1182 GFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELG 1241
GF G +D TLF D L+VQ+YVDDIIFG + + +F ++M EFEMSMMGEL
Sbjct: 1458 GFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFEMSMMGELT 1517
Query: 1242 FFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKE 1301
FFLGLQIKQ GIF+ Q KY K++LKK+ M + K ++TPM +SSL DE G+ + ++E
Sbjct: 1518 FFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQRE 1577
Query: 1302 YRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKG 1361
YR MIGSLLYLTASRPDI F+V LCARFQ + SH AVKRIFRY+ T + G+WY
Sbjct: 1578 YRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCS 1637
Query: 1362 SSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASC 1421
S+ + A+ DAD+AG K++RKSTSG+C FLG +L+ WS RKQ+++A ST EAEYV+AAS
Sbjct: 1638 SALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASA 1697
Query: 1422 CSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKK 1481
CSQ+LW+ + L+DY L ++ VP+ CDNTSAIN++KNP+QHSR+KHIEI++HF+RD+V+K
Sbjct: 1698 CSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKG 1757
Query: 1482 NIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
I L FV++E QLADIFTKPL RF FL+ +L
Sbjct: 1758 TIVLEFVESEKQLADIFTKPLDRSRFEFLRSEL 1790
Score = 137 bits (344), Expect = 4e-30
Identities = 148/620 (23%), Positives = 261/620 (41%), Gaps = 89/620 (14%)
Query: 13 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKA 72
S +P +FDG N+ WK +ME +L SQ +++W + + VP + + + A
Sbjct: 6 SMKPFVFDGHNFVIWKARMEAYLPSQGHNVWNKVKSPYTVPDDVD--------ITPANMA 57
Query: 73 QVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFE 132
QV N +AR + ++ E RV +A +W L HEG + ++ + ++++
Sbjct: 58 QVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLNQFH---KEYQ 114
Query: 133 VFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLP-SMWRPMVTAITQAK 191
FEM E+ID + RF IV+++RS+GK +S +D R +L CL +W VT+IT++
Sbjct: 115 RFEMHPGESIDSYFKRFGEIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESA 174
Query: 192 DLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQEPQELEEVH- 250
L + ++ L L+ HE+ + K +K L S TSS D V L +H
Sbjct: 175 PLSELTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFSLAALHS 234
Query: 251 ------EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 304
E+ ED+LAL +++ R +N +K KTN C+ C +
Sbjct: 235 VTEEQLEKIPEDDLALFARKFSRAY--KNVRDRKRGKTN---------EPFVCFECGEPN 283
Query: 305 HFKNECPDIKKVQRKPPFK-------------KKAMITWDDMEESDSQEDADTDMGLMAQ 351
H + CP +KK K K KKA+ E D D+D
Sbjct: 284 HIRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD------ 337
Query: 352 SDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDE 411
DD++E K D + + L ++ N C +++ + E E+ + D
Sbjct: 338 -DDDQE----KGDKDFSGM-----CCLANNEDFINLCLMALEDKDDSSEHPEVCLD--DI 385
Query: 412 SRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKS 471
+ DS D E+++++ + + E+ + K ++E LK + G
Sbjct: 386 PSLDGSLCDDSCSDNDTVDDELSKERMAHLMI--EISDKYRSSKYKIEKLKSENDGMALE 443
Query: 472 TETFQNIVGSQNK-STKKSGLG----FKDPSK--IIGSFVPKAKIRVKCCFCDKYGHNES 524
++++ ++ ST S L KD K +G+ P + C C + +
Sbjct: 444 IARLRSMIPEEDTCSTCASYLSEINLLKDKLKSCTLGAGNP-SSASAACSTCYEMKVDMG 502
Query: 525 VCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTF---RKD 581
+ ++ K +K+ ++ + R E+ + +D RQ V + D
Sbjct: 503 LLEMELKELKEKFVH-----DRIGRCENCP---------ILTSDNDELRQQVAMLRTKND 548
Query: 582 LLEELTFKDPTLHGLDSGCS 601
LLE K+P +H + C+
Sbjct: 549 LLESFATKEP-IHSSCANCA 567
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 736 bits (1899), Expect = 0.0
Identities = 423/1016 (41%), Positives = 591/1016 (57%), Gaps = 153/1016 (15%)
Query: 596 LDSGCSRHMTGDRDCFLTFEKKDGG--LVTFGNNDKGKIRGKGTIGNLNSARIENVQYVE 653
LDSGC+ HMT ++ F ++EK +TF + ++G
Sbjct: 805 LDSGCTNHMTREKRMFSSYEKNQDPQRAITFEDGNQG----------------------- 841
Query: 654 GLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLELNDMPAESCF 713
V + S + + F G LY+++ + ++C
Sbjct: 842 -------------------------VTVFRRSDDSIAFKGVLEGQLYLVDFDRAELDTCL 876
Query: 714 MSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRI---CEACVKG--KQVK 768
++ W+WH+R H+ MK + KL + + + GL + FEKDR + +KG ++ +
Sbjct: 877 IAKTNMGWLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDREKSQTQETLKGFLRRAQ 936
Query: 769 SSFKT-IEFISTQKPLELLHIDLFGPVQTASL--------TGKRYGFV-----IVDDFSR 814
+ F I+ I + E + + G ++ + T ++ G V + D +R
Sbjct: 937 NEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVERKNRTLLDMAR 996
Query: 815 FTWVLFLKHKDESF-EAFQNFC--------KRVQNEKGYNIITVRSDHGGEFENASFKTF 865
T + K D + EA C R+ + Y ++T G+ N S+
Sbjct: 997 -TMLDEYKTPDRFWAEAVNTACYAINRLYLHRILKKTSYELLT------GKKPNISYF-- 1047
Query: 866 FDENVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFD 925
VFG C+IL + + KF PK+ + LGY ++ YRV+N T VE+S ++FD
Sbjct: 1048 ---RVFGSKCFILVKRGRKSKFAPKTVEGFLLGYDPNTRAYRVFNKSTGLVEVSCDVVFD 1104
Query: 926 E----------YDEHSK-----------------PKENEDTEVPTLQNVPVQNTENTVEK 958
E DE PKE+E E+P+ Q+ P +T+ +
Sbjct: 1105 ETNGSQVEQVDLDETGNDEAPCVALRNMSIGDVCPKESE--ELPSAQDQPSSSTQASPPT 1162
Query: 959 EDDQNAQ-----DQSFQSP-------------------------PRSWRMVG-DHPTDQI 987
+++ AQ DQ+ + P PR + + DHP D I
Sbjct: 1163 QNEDEAQVDEVEDQANEPPQDDGIDQGGDANDQDKEDEEQRPPHPRVHQAIQQDHPVDTI 1222
Query: 988 IGSTTDGV--RTRLSFQDNNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNKVWNL 1045
+G GV R+R++ + + +S +EP + EA+ D W+ AM+EEL+ F RN+VW+L
Sbjct: 1223 LGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHL 1282
Query: 1046 VPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIR 1105
VP ++ ++GT+WVFRNK DE G V RNKARLVA+GY+Q EG+D+ ET+APVARLE+IR
Sbjct: 1283 VPR-PNQNVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLESIR 1341
Query: 1106 ILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQ 1165
ILLAYA + KL+QMDVKSAFLNG + EEVYV QPPGF + E PNHV+KL+KALYGLKQ
Sbjct: 1342 ILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYGLKQ 1401
Query: 1166 APRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFS 1225
APRAWY+ L FLI NGF GK D TLF KT DL + Q+YVDDIIFG+T CEEFS
Sbjct: 1402 APRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFS 1461
Query: 1226 NLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPS 1285
+M +FEMSMMGEL +FLG Q+KQ G FISQ KY +DIL K+ M +AK + TPM +
Sbjct: 1462 RIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPMGTN 1521
Query: 1286 SSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIF 1345
LD D GKS+ +K YR MIGSLLYL ASRPDI+ +V +CARFQ+ KESHLTAVKRI
Sbjct: 1522 GHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRIL 1581
Query: 1346 RYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNT 1405
RYL T GLWY +GS+FDL+ Y DAD+AG K+ RKSTSG+CQFLG++L+ W+ +KQN+
Sbjct: 1582 RYLAYTPKFGLWYPRGSTFDLLGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNS 1641
Query: 1406 IALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSK 1465
+ALST EAEY++A CC+Q+LW+R L DY + T VP+ CDN SAI ++ NP++HSR+K
Sbjct: 1642 VALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTK 1701
Query: 1466 HIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKLLIMKNPN 1521
HI I++HF+RDH QK +I +S+++T++QLADIFTKPL E F L+ +L I+ + N
Sbjct: 1702 HIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQTFTKLRHELNILDSRN 1757
Score = 108 bits (269), Expect = 2e-21
Identities = 108/442 (24%), Positives = 196/442 (43%), Gaps = 62/442 (14%)
Query: 66 WSTDEKAQVL-LNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRI 124
+ DE AQ+ NS+A L +L+ EE +V +AK +WD LK HEG K T+
Sbjct: 112 YDEDEVAQIEHFNSQATTILLASLSREEYNKVQGLKSAKEIWDVLKTAHEGDELTKITKR 171
Query: 125 DIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKA-YSTHDRIRKILRCLPSMWRPM 183
+ + F + + E MY R T+VN++R+LG + H+ ++ ILR L +
Sbjct: 172 ETIEGELGRFRLRKGEEPQHMYNRLKTLVNQVRNLGSVKWDDHEMVKVILRSLIFLNPTQ 231
Query: 184 VTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQE- 242
V I M E++IG+ + E +++G + + ++ +Q + E+ +E
Sbjct: 232 VQLIRGNPRYTKMTPEEVIGNFVSFECMIEGSRKINELDDATTSEAQPVAFKATEEKKEE 291
Query: 243 --PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGC 300
P + +E+AL+ K ++++ +R K +S+ CY C
Sbjct: 292 ATPSRQPIDASKLDNEEMALVIKSFRQILKQRRG------------KDYKSRSKKVCYKC 339
Query: 301 NKTGHFKNECP--------DIKKVQRKPP---FKKK-----AMITWD-DMEESDSQEDAD 343
K GHF +CP D KK +RK +KKK WD D SDS +D D
Sbjct: 340 GKPGHFIAKCPISSDSDRGDDKKGRRKEKKKYYKKKGGDAHVCREWDSDDSSSDSSDDED 399
Query: 344 -----TDMGLM--------AQSDDEEEVIIYKTDSLYK--------DLENKIDSLLYDSN 382
GL+ + D ++ + K+ + Y+ D E+ + SL + N
Sbjct: 400 AANIAVTKGLLFPNVGHKCLMAKDGKKKVKSKSSTKYESSSDDNASDEEDNLRSLFANLN 459
Query: 383 FLTNRCHSLIKELSEIKEEKEILQNKYD----ESRKTIKILQDSHFDMSEKQREINRKQK 438
L + +S I E+ ++L ++ D E++K +K+ ++++ EK +++ +
Sbjct: 460 IAQK--EKLNELVSAIHEKDDLLDSQEDLLIKENKKHVKV-KNAYSLQVEKCEKLSSELS 516
Query: 439 GIMSVPSEVQKENILLKKEVET 460
+ ++ EN L +V++
Sbjct: 517 TCREMIDNLRNENASLNAKVDS 538
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 714 bits (1842), Expect = 0.0
Identities = 371/734 (50%), Positives = 492/734 (66%), Gaps = 57/734 (7%)
Query: 834 FCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENVFGCYCYILNNKEKLGKFDPKSDK 893
+ R+ Y ++T G N S+ VFG CYIL K + KF PK+ +
Sbjct: 348 YLHRILKNTSYELLT------GNKPNVSYF-----RVFGSKCYILVKKGRNSKFAPKAVE 396
Query: 894 AIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDE--------------YDEHS-------- 931
LGY + +K YRV+N + VE+S ++FDE DE
Sbjct: 397 GFLLGYDSNTKAYRVFNKSSGLVEVSGDVVFDETNGSPREQVVDCDDVDEEDIPTAAIRT 456
Query: 932 ------KPKENEDTEVP---TLQNVPVQNTENTVEKE--------DDQNAQDQSFQSPPR 974
+P+E ++ E P T+ + P Q+ E ++E DD ++++ +PP
Sbjct: 457 MAIGEVRPQEQDEREQPSPSTMVHPPTQDDEQVHQQEVCDQGGAQDDHVLEEEAQPAPPT 516
Query: 975 SWRMV--GDHPTDQIIGSTTDGVRTR---LSFQDNNMAMISQMEPKSINEAIIDDSWIKA 1029
R + DHP DQI+G + GV TR ++F ++N + +S +EP + EA++D W+ A
Sbjct: 517 QVRAMIQRDHPVDQILGDISKGVTTRSRLVNFCEHN-SFVSSIEPFRVEEALLDPDWVLA 575
Query: 1030 MKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGI 1089
M+EEL+ F+RN+VW LVP + + ++GT+WVFRNK DE G V RNKARLVA+GY Q G+
Sbjct: 576 MQEELNNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGL 634
Query: 1090 DYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEK 1149
D++ETFAPVARLE+IRILLAYAAH S +L+QMDVKSAFLNG + EEVYV QPPGF ++
Sbjct: 635 DFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERY 694
Query: 1150 PNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVD 1209
P+HV KL+KALYGLKQAPRAWY+ L FLI N F GK D TLF KT + DL + Q+YVD
Sbjct: 695 PDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVD 754
Query: 1210 DIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKK 1269
DIIFG+T K CEEFS +M +FEMSMMGEL +FLG Q+KQ +G FISQ KY +D+LK+
Sbjct: 755 DIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKR 814
Query: 1270 YKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARF 1329
+ M +AK TPM D ++ GKS+ +K YR MIGSLLYL ASRPDI+ +V +CARF
Sbjct: 815 FGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARF 874
Query: 1330 QTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQ 1389
Q+ KE HL AVKRI RYLV T GLWY KGS+FDLV Y D+DYAG KV+RKSTSG+CQ
Sbjct: 875 QSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQ 934
Query: 1390 FLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNT 1449
FLG++L+ W+ +KQ ++ALST EAEYV+A CC+Q+LW+R L D+ + VP+ CDN
Sbjct: 935 FLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNE 994
Query: 1450 SAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNF 1509
SAI +++NP++HSR+KHI+I+HHF+RDH QK +I + V TENQLADIFTKPL E F
Sbjct: 995 SAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCR 1054
Query: 1510 LKEKLLIMKNPNKD 1523
L+ +L ++ + N D
Sbjct: 1055 LRSELNVLDSRNLD 1068
Score = 223 bits (568), Expect = 4e-56
Identities = 116/277 (41%), Positives = 165/277 (58%), Gaps = 4/277 (1%)
Query: 596 LDSGCSRHMTGDRDCFLTFEK-KDG-GLVTFGNNDKGKIRGKGTIGNLNSARIENVQYVE 653
+DSGC+ HMTG++ F ++ K KD + FG+ ++GK++G G I N I NV VE
Sbjct: 13 IDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISNEHSISNVFLVE 72
Query: 654 GLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLELNDMPA--ES 711
L +NLLS+SQLC+ G+ +F V + L F G LY+++ A ++
Sbjct: 73 SLGYNLLSVSQLCNMGYNCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVDFAKEEAGLDA 132
Query: 712 CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVKGKQVKSSF 771
C ++ W+WH+R H+ MK + KL + + V GL + FEKDR C AC GKQV S
Sbjct: 133 CLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFEKDRPCAACQAGKQVGGSH 192
Query: 772 KTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAF 831
T ++T +PLE+LH+DLFGPV S+ G +YG VIVDDFSRFTWV FL+ K E+
Sbjct: 193 HTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQEKSETQGTL 252
Query: 832 QNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDE 868
+ F +R QNE + +RSD+G EF+N + F +E
Sbjct: 253 KRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEE 289
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 708 bits (1828), Expect = 0.0
Identities = 358/673 (53%), Positives = 465/673 (68%), Gaps = 29/673 (4%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDE 929
VFGC C++L + L KF+ +S IFLGY+T S+ YRVY L T + + + FDE
Sbjct: 1115 VFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASP 1173
Query: 930 HSKPK-----------------ENEDTEVPTLQNVP-VQNTENTVEKEDDQNAQ------ 965
++P+ +++D+ P L + P VQ T + +A
Sbjct: 1174 GARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSSA 1233
Query: 966 ----DQSFQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPKSINEAI 1021
D P + HP D +IG + V S++ N A ++ EPK++ A+
Sbjct: 1234 AEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCHAL 1293
Query: 1022 IDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQ 1081
D++W+ AM EEL FERNKVW+LV +IGT+WVF+NKL E+G +VRNKARLVAQ
Sbjct: 1294 SDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQ 1353
Query: 1082 GYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQP 1141
G+ Q EG+D++ETFAPVARLEAIRILLA+AA K KLFQMDVKSAFLNG + EEVYV QP
Sbjct: 1354 GFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQP 1413
Query: 1142 PGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDL 1201
PGF N + PNHVFKL KALYGLKQAPRAWY+RL TFL++NGF G +D TLF D
Sbjct: 1414 PGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDF 1473
Query: 1202 LIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEK 1261
L+VQ+YVDDIIFG + + +FS++M EFEMSMMGEL FFLGLQIKQ GIF+ Q K
Sbjct: 1474 LLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTK 1533
Query: 1262 YVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVF 1321
Y K++LKK+ M + K ++TPM +SSL DE G+ + ++EYR MIGSLLYLTASRPDI F
Sbjct: 1534 YSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHF 1593
Query: 1322 AVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVER 1381
+V LCARFQ + SH AVKRIFRY+ T + G+WY S+ + A+ DAD+AG K++R
Sbjct: 1594 SVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDR 1653
Query: 1382 KSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTS 1441
KSTSG+C FLG +L+ WS RKQ+++A ST EAEYV+AAS CSQ+LW+ + L+DY L ++
Sbjct: 1654 KSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSG 1713
Query: 1442 VPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKP 1501
VP+ CDNTSAIN++KNP+QHSR+KHIEI++HF+RD+V+K I L FV++E QLADIFTKP
Sbjct: 1714 VPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKP 1773
Query: 1502 LVEDRFNFLKEKL 1514
L RF FL+ +L
Sbjct: 1774 LDRSRFEFLRSEL 1786
Score = 221 bits (563), Expect = 1e-55
Identities = 156/539 (28%), Positives = 258/539 (46%), Gaps = 48/539 (8%)
Query: 366 LYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYD--ESRKTIKILQDSH 423
L +L+ + ++D C L + E++++ +L+ K D ES T + + S
Sbjct: 507 LEMELKELKEKFVHDRIGRCENCPILTSDNDELRQQVAMLKTKNDLLESFATKEPIHSSC 566
Query: 424 FDMSEKQREINRKQKGIMSVPS-EVQKENILLKKEVETLKKDLTGFIKSTETFQ------ 476
+ + + E+ + I S+ S + I LK ++E+ KK+ + +S E F
Sbjct: 567 ANCAILETELKDAKTVIDSIKSIDSCSSCISLKVDLESAKKENSYLQQSLERFAQGKKKL 626
Query: 477 NIVGSQNK-STKKSGLGFK-------DPSKIIGSFVPKAKIRVKCCFCDKYGHNESVCHV 528
N++ Q+K S G+G+ +I+G ++ K G +
Sbjct: 627 NMILDQSKVSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPITFKSAGFIGNTSSS 686
Query: 529 KKKFIKQNNLNLSSERS--------------HLNRSESSQKAEKAKKTCFYCNKSDHKRQ 574
K + + ++S+ H ++ EK K C YC K+ H
Sbjct: 687 TPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLDF 746
Query: 575 NVTFRKDLLEELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGG-LVTFGNNDKGKIR 633
V L +DSGCSRHMTG+ F + + G +TFG+ G++
Sbjct: 747 GVGRSNSWL------------VDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVM 794
Query: 634 GKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSG 693
KGTI + +++V V LK+NLLS+SQLCD EV FK + V S + +F
Sbjct: 795 AKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVF-DI 853
Query: 694 SRRKNLYVLELNDM---PAESCFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKI 750
SR ++ + P+ S +D + WH+R GHI ++++S +DL+RGLPK+
Sbjct: 854 SRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 913
Query: 751 SFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVD 810
+KD +C C GK SS K + + T P +LLH+D GP + S+ GK Y V+VD
Sbjct: 914 KVQKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 973
Query: 811 DFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDEN 869
DFSR++WV FL+ K+E+F FQ+ + + E + +RSD+G EF+N++F++F D +
Sbjct: 974 DFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSS 1032
Score = 141 bits (356), Expect = 2e-31
Identities = 149/620 (24%), Positives = 263/620 (42%), Gaps = 86/620 (13%)
Query: 13 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKA 72
S +P +FDG N+ WK +ME +L+SQ +++W + + VP + + + A
Sbjct: 6 SAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMA 57
Query: 73 QVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFE 132
QV N +AR + ++ E RV +A +W L HEG + ++ R + ++++
Sbjct: 58 QVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQ 117
Query: 133 VFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLP-SMWRPMVTAITQAK 191
FEM E+ID + RF I++++RS+GK +S +D R +L CL +W VT+IT++
Sbjct: 118 RFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESA 177
Query: 192 DLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQEPQELEEVH- 250
L + ++ L L+ HE+ + K +K L S TSS D V L +H
Sbjct: 178 PLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAALHS 237
Query: 251 ------EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 304
E+ ED+LAL +++ R +N +K KTN C+ C +
Sbjct: 238 VTEEQLEKIPEDDLALFARKFSRAY--KNVRDRKRGKTN---------EPFVCFECGEPN 286
Query: 305 HFKNECPDIKKVQRKPPFK-------------KKAMITWDDMEESDSQEDADTDMGLMAQ 351
H + CP +KK K K KKA+ E D D+D
Sbjct: 287 HKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD------ 340
Query: 352 SDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDE 411
DD++E K D + + L ++ N C +++ + E E+ + D
Sbjct: 341 -DDDQE----KGDKDFSGM-----CCLANNEDFINLCLMALEDKDDSSEHPEVCLD--DI 388
Query: 412 SRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKS 471
+ DS D E+++++ + + E+ + K ++E LK + G
Sbjct: 389 PSLDGSLCDDSCSDNDSVDDELSKERMAHLMI--EISDKYRSSKYKIEKLKSENDGMALE 446
Query: 472 TETFQNIVGSQNK-STKKSGLG----FKDPSK--IIGSFVPKAKIRVKCCFCDKYGHNES 524
++++ ++ ST S L KD K +G+ P + C C + +
Sbjct: 447 IARLRSMIPEEDTCSTCASYLSEINLLKDKLKSCALGAGNP-SSASAACSTCYEMKVDMG 505
Query: 525 VCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRK---D 581
+ ++ K +K+ ++ + R E+ + +D RQ V K D
Sbjct: 506 LLEMELKELKEKFVH-----DRIGRCENCP---------ILTSDNDELRQQVAMLKTKND 551
Query: 582 LLEELTFKDPTLHGLDSGCS 601
LLE K+P +H + C+
Sbjct: 552 LLESFATKEP-IHSSCANCA 570
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 707 bits (1826), Expect = 0.0
Identities = 358/673 (53%), Positives = 464/673 (68%), Gaps = 29/673 (4%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDE 929
VFGC C++L + L KF+ +S IFLGY+T S+ YRVY L T + + + FDE
Sbjct: 730 VFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASP 788
Query: 930 HSKPK-----------------ENEDTEVPTLQNVP-VQNTENTVEKEDDQNAQ------ 965
++P+ +++D+ P L + P VQ T + +A
Sbjct: 789 GARPEISGVLDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSSA 848
Query: 966 ----DQSFQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPKSINEAI 1021
D P + HP D +IG + V S+ N A ++ EPK++ A+
Sbjct: 849 AEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYDLVNSAFVASFEPKNVCHAL 908
Query: 1022 IDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQ 1081
D++W+ AM EEL FERNKVW+LV +IGT+WVF+NKL E+G +VRNKARLVAQ
Sbjct: 909 SDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQ 968
Query: 1082 GYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQP 1141
G+ Q EG+D++ETFAPVARLEAIRILLA+AA K KLFQMDVKSAFLNG + EEVYV QP
Sbjct: 969 GFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQP 1028
Query: 1142 PGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDL 1201
PGF N + PNHVFKL KALYGLKQAPRAWY+RL TFL++NGF G +D TLF D
Sbjct: 1029 PGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDF 1088
Query: 1202 LIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEK 1261
L+VQ+YVDDIIFG + + +FS++M EFEMSMMGEL FFLGLQIKQ GIF+ Q K
Sbjct: 1089 LLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTK 1148
Query: 1262 YVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVF 1321
Y K++LKK+ M + K ++TPM +SSL DE G+ + ++EYR MIGSLLYLTASRPDI F
Sbjct: 1149 YSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHF 1208
Query: 1322 AVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVER 1381
+V LCARFQ + SH AVKRIFRY+ T + G+WY S+ + A+ DAD+AG K++R
Sbjct: 1209 SVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDR 1268
Query: 1382 KSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTS 1441
KSTSG+C FLG +L+ WS RKQ+++A ST EAEYV+AAS CSQ+LW+ + L+DY L ++
Sbjct: 1269 KSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSG 1328
Query: 1442 VPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKP 1501
VP+ CDNTSAIN++KNP+QHSR+KHIEI++HF+RD+V+K I L FV++E QLADIFTKP
Sbjct: 1329 VPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKP 1388
Query: 1502 LVEDRFNFLKEKL 1514
L RF FL+ +L
Sbjct: 1389 LDRSRFEFLRSEL 1401
Score = 203 bits (517), Expect = 3e-50
Identities = 106/277 (38%), Positives = 164/277 (58%), Gaps = 3/277 (1%)
Query: 596 LDSGCSRHMTGDRDCFLTFEKKDGG-LVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEG 654
+DSGCSRHMTG+ F + + G +TFG+ G++ KGTI + +++V V
Sbjct: 371 VDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSK 430
Query: 655 LKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLELNDMPAES-CF 713
LK+NLLS+SQLCD EV FK + V S + +F + + + P S C
Sbjct: 431 LKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSRCL 490
Query: 714 MSLE-KDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVKGKQVKSSFK 772
++ E +D + WH+R GHI ++++S +DL+RGLPK+ KD +C C GK SS K
Sbjct: 491 VASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKAPKDLVCAPCRHGKMTSSSHK 550
Query: 773 TIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQ 832
+ + T P +LLH++ GP + S+ GK Y V+VDDFSR++WV FL+ K+E+F FQ
Sbjct: 551 PVTMVMTDGPGQLLHMNTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQ 610
Query: 833 NFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDEN 869
+ + + E + +RSD+G EF+N++F++F D +
Sbjct: 611 SLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSS 647
Score = 124 bits (312), Expect = 2e-26
Identities = 107/391 (27%), Positives = 174/391 (44%), Gaps = 54/391 (13%)
Query: 31 MELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKAQVLLNSKARLFLSCALTM 90
ME +L+SQ +++W + + VP + + + AQV N +AR + ++
Sbjct: 1 MEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMAQVDFNYRARNAIIGGISS 52
Query: 91 EESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMSENETIDEMYARFT 150
E RV +A +W L HEG + ++ R + ++++ FEM E+ID + RF
Sbjct: 53 GEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEMHPGESIDSYFKRFG 112
Query: 151 TIVNEMRSLGKAYSTHDRIRKILRCLP-SMWRPMVTAITQAKDLKSMNLEDLIGSLRAHE 209
IV+++RS+GK +S +D R +L CL +W VT+IT++ L + ++ L L+ HE
Sbjct: 113 EIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSDLTMDKLYSKLKTHE 172
Query: 210 VVLQGDKPVKKVRTLALKASQQTSSVDDEDVQEPQELEEVH-------EEEAEDELALIS 262
+ + K +K L S TSS D V L +H E+ ED+LAL +
Sbjct: 173 MDVFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFSLAALHSVTEEQLEKIPEDDLALFA 232
Query: 263 KRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPF 322
++ R +N KK KTN C+ C + H + CP +KK K
Sbjct: 233 RKFSRAY--KNVRNKKRGKTN---------EPFVCFECGEPNHIRVNCPKLKKKSDKTTK 281
Query: 323 K-------------KKAM---------ITWDDME-ESDSQEDADTDMGLMAQSDDEEEVI 359
K KKA+ + D++ + D QE D D M + E+ I
Sbjct: 282 KPEGQGRKGKNDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKDFSGMCCLANNEDFI 341
Query: 360 IYKTDSLYKDLENKIDSLLYDSNFLTNRCHS 390
+ LE+K DS + +F R +S
Sbjct: 342 ----NLCLMALEDKDDSSEHPEDFGVGRSNS 368
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 707 bits (1826), Expect = 0.0
Identities = 360/697 (51%), Positives = 476/697 (67%), Gaps = 44/697 (6%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDE--- 926
VFG CYIL K + KF PK+ + LGY + +K YRV+N + VE+S ++FDE
Sbjct: 962 VFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNG 1021
Query: 927 -----------YDEHS--------------KPKENEDTEVP---TLQNVPVQNTENTVEK 958
DE +P+E ++ + P T+ + P ++ E +
Sbjct: 1022 SPREQVVDCDDVDEEDVPTAAIRTMAIGEVRPQEQDERDQPSSSTMVHPPTEDDEQVPQV 1081
Query: 959 E--------DDQNAQDQSFQSPPRSWRMV--GDHPTDQIIGSTTDGVRTRLSFQD--NNM 1006
E DDQ ++++ +PP R + DHP DQI+G + GV TR + +
Sbjct: 1082 EALDQGGAQDDQVMEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTTRSRLVNFCEHY 1141
Query: 1007 AMISQMEPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLD 1066
+ +S +EP + EA++D W+ AM+EEL+ F+RN+VW LVP + + ++GT+WVFRNK D
Sbjct: 1142 SFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQD 1200
Query: 1067 EEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSA 1126
E G V RNKARLVA+GY Q G+D++ETFAPVARLE+IRILLAYAAH S +L+QMDVKSA
Sbjct: 1201 EHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSA 1260
Query: 1127 FLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRG 1186
FLNG + EEVYV QPPGF ++ P+HV KL+KALYGLKQAPRAWY+ L FL+ N F G
Sbjct: 1261 FLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLRDFLLANAFKVG 1320
Query: 1187 KIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGL 1246
K D TLF KT + DL + Q+YVDDIIFG+T K CEEFS +M +FEMSMMGEL +FLG
Sbjct: 1321 KADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGF 1380
Query: 1247 QIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMI 1306
Q+KQ +G FISQ KY +D+LK++ M +AK TPM D ++ GKS+ +K YR MI
Sbjct: 1381 QVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMI 1440
Query: 1307 GSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDL 1366
GSLLYL ASRPDI+ +V +CARFQ+ KE HL AVKRI RYLV T GLWY KGS+FDL
Sbjct: 1441 GSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDL 1500
Query: 1367 VAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQIL 1426
V Y D+DYAG KV+RKSTSG+CQFLG++L+ W+ +KQ ++ALST EAEYV+A CC+Q+L
Sbjct: 1501 VGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLL 1560
Query: 1427 WVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALS 1486
W+R L D+ + VP+ CDN S I +++NP++HSR+KHI+I+HHF+RDH QK +I +
Sbjct: 1561 WMRQTLRDFGYNLSKVPLLCDNESDIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVF 1620
Query: 1487 FVDTENQLADIFTKPLVEDRFNFLKEKLLIMKNPNKD 1523
V TENQLADIFTKPL E F L+ +L ++ + N D
Sbjct: 1621 HVSTENQLADIFTKPLDEKTFCRLRSELNVIDSRNLD 1657
Score = 124 bits (312), Expect = 2e-26
Identities = 116/471 (24%), Positives = 209/471 (43%), Gaps = 57/471 (12%)
Query: 15 RPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKAQV 74
+PP FDG +Y FW KM L S +W ++ NG ++ + + Q+
Sbjct: 99 KPPHFDGEDYGFWSHKMRSHLFSLHPSIWEIVENGMKFDSSDSPMLINE---------QI 149
Query: 75 LLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVF 134
N++A L +L EE +V NAK +WDTLKI HEG T++++ + F
Sbjct: 150 HRNAQATTVLLASLCREEYNKVSGLDNAKQIWDTLKISHEGNDVTMLTKMELVEGELGRF 209
Query: 135 EMSENETIDEMYARFTTIVNEMRSLGKA-YSTHDRIRKILRCLPSMWRPMVTAITQAKDL 193
M E + Y R T+VN++RS G ++ HD +R +LR + +V I +
Sbjct: 210 AMIRGEEPTQTYNRLKTLVNKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPRY 269
Query: 194 KSMNLEDLIGSLRAHEVVLQGDK--------PVKKVRTLALKASQQTSSVDDEDVQEPQE 245
M+ E+++G + ++++ + P+ + + +ALKAS+ ++ P +
Sbjct: 270 TKMSPEEILGKFVSGRMMIKEARYVDDALNGPIHEPQPIALKASRSKEAL-------PSK 322
Query: 246 LEEVHEEEAED-ELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 304
+ ++ D E+ALI KR + + + RK+ P KT+ K + +C+ C K G
Sbjct: 323 VAQIEAAGLNDEEMALIIKRFKTAL----RGRKEHPN-----KTKT-KGKRSCFKCGKIG 372
Query: 305 HFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLMAQSDDEEEVIIYKTD 364
HF CPD Q K K W + +++ + + +G SD
Sbjct: 373 HFIANCPDNDSDQEKKSGK------W-EKKKNYKKAKGEAHIGKEWDSD---------CS 416
Query: 365 SLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDESRKTIKILQDSHF 424
S D E + S N H+ + KE+K +N S + +
Sbjct: 417 SSDSDNEGLAATAFNKSTLFPNERHTCLM----AKEKKVCTRNSTYASSSEDESSDEDEV 472
Query: 425 DMSEKQREINR-KQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKSTET 474
D S + ++R K I + + ++NILL+K+ ++L ++ F+++ ++
Sbjct: 473 DYSCLFKGLDRSKIDKINELIDALNEKNILLEKQEDSLYEEHDKFVEAQKS 523
Score = 38.1 bits (87), Expect = 2.3
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 822 KHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDE 868
K K E+ + F +R QNE + +RSD+G EF+N + F +E
Sbjct: 832 KEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEE 878
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 707 bits (1825), Expect = 0.0
Identities = 357/673 (53%), Positives = 465/673 (69%), Gaps = 29/673 (4%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDE 929
VFGC C++L + L KF+ +S IFLGY+T S+ YRVY L T + + + FDE
Sbjct: 1115 VFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASP 1173
Query: 930 HSKPK-----------------ENEDTEVPTLQNVP-VQNTENTVEKEDDQNAQ------ 965
++P+ +++D+ P L + P VQ T + +A
Sbjct: 1174 GARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSSA 1233
Query: 966 ----DQSFQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPKSINEAI 1021
D P + HP D +IG + V S++ N A ++ EPK++ A+
Sbjct: 1234 AEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCHAL 1293
Query: 1022 IDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQ 1081
D++W+ AM EEL FERNKVW+LV +IGT+WVF+NKL E+G +VRNKARLVAQ
Sbjct: 1294 SDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQ 1353
Query: 1082 GYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQP 1141
G+ Q EG+D++ETFAPVARLEAIRILLA+AA K KLFQMDVKSAFLNG + EEVYV QP
Sbjct: 1354 GFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQP 1413
Query: 1142 PGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDL 1201
PGF N + PNHVFKL KALYGLKQAPRAWY+RL TFL++NGF G +D TLF D
Sbjct: 1414 PGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDF 1473
Query: 1202 LIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEK 1261
L+VQ+YVDDIIFG + + +FS++M EFEMSMMGEL FFLGLQIKQ GIF+ Q K
Sbjct: 1474 LLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTK 1533
Query: 1262 YVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVF 1321
Y K++LKK+ M + K ++TPM +SSL DE G+ + ++EYR MIGSLLYLTASRPDI F
Sbjct: 1534 YSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHF 1593
Query: 1322 AVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVER 1381
+V LCARFQ + SH AVKR+FRY+ T + G+WY S+ + A+ DAD+AG K++R
Sbjct: 1594 SVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDR 1653
Query: 1382 KSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTS 1441
KSTSG+C FLG +L+ WS RKQ+++A ST EAEYV+AAS CSQ+LW+ + L+DY L ++
Sbjct: 1654 KSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSG 1713
Query: 1442 VPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKP 1501
VP+ CDNTSAIN++KNP+QHSR+KHIEI++HF+RD+V+K I L FV++E QLADIFTKP
Sbjct: 1714 VPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKP 1773
Query: 1502 LVEDRFNFLKEKL 1514
L RF FL+ +L
Sbjct: 1774 LDRSRFEFLRSEL 1786
Score = 218 bits (554), Expect = 2e-54
Identities = 155/539 (28%), Positives = 256/539 (46%), Gaps = 48/539 (8%)
Query: 366 LYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYD--ESRKTIKILQDSH 423
L +L+ + ++D C L + E++++ +L+ K D ES T + + S
Sbjct: 507 LEMELKELKEKFVHDRIGRCENCPILTSDNDELRQQVAMLRTKNDLLESFATKEPIHSSC 566
Query: 424 FDMSEKQREINRKQKGIMSVPS-EVQKENILLKKEVETLKKDLTGFIKSTETFQ------ 476
+ + + E+ + I S+ S + I LK ++E+ KK+ + +S E F
Sbjct: 567 ANCAILETELKDAKTVIDSIKSIDSCSSCISLKVDLESAKKENSYLQQSLERFAQGKKKL 626
Query: 477 NIVGSQNK-STKKSGLGFK-------DPSKIIGSFVPKAKIRVKCCFCDKYGHNESVCHV 528
N++ Q+K S G+G+ +I+G ++ K G +
Sbjct: 627 NMILDQSKVSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPITFKSAGFIGNTSSS 686
Query: 529 KKKFIKQNNLNLSSERS--------------HLNRSESSQKAEKAKKTCFYCNKSDHKRQ 574
K + + ++S+ H ++ EK K C YC K+ H
Sbjct: 687 TPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLDF 746
Query: 575 NVTFRKDLLEELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGG-LVTFGNNDKGKIR 633
V L +DSGCSRHMTG+ F + + +TFG+ G++
Sbjct: 747 GVGRSNSWL------------VDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVM 794
Query: 634 GKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSG 693
KGTI + +++V V LK+NLLS+SQLCD EV FK + V S + +F
Sbjct: 795 AKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVF-DI 853
Query: 694 SRRKNLYVLELNDM---PAESCFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKI 750
SR ++ + P+ S +D + WH+R GHI ++++S +DL+RGLPK+
Sbjct: 854 SRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKL 913
Query: 751 SFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVD 810
KD +C C GK SS K + + T P +LLH+D GP + S+ GK Y V+VD
Sbjct: 914 KVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVD 973
Query: 811 DFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDEN 869
DFSR++WV FL+ K+E+F FQ+ + + E + +RSD+G EF+N++F++F D +
Sbjct: 974 DFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSS 1032
Score = 141 bits (355), Expect = 2e-31
Identities = 148/620 (23%), Positives = 263/620 (41%), Gaps = 86/620 (13%)
Query: 13 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKA 72
S +P +FDG N+ WK +ME +L+SQ +++W + + VP + + + A
Sbjct: 6 SAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMA 57
Query: 73 QVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFE 132
QV N +AR + ++ E RV +A +W L HEG + ++ R + ++++
Sbjct: 58 QVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQ 117
Query: 133 VFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLP-SMWRPMVTAITQAK 191
FEM E+ID + RF I++++RS+GK +S +D R +L CL +W VT+IT++
Sbjct: 118 RFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESA 177
Query: 192 DLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQEPQELEEVH- 250
L + ++ L L+ HE+ + K +K L S TSS D V L +H
Sbjct: 178 PLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAALHS 237
Query: 251 ------EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 304
E+ ED+LAL +++ R +N +K KTN C+ C +
Sbjct: 238 VTEEQLEKIPEDDLALFARKFSRAY--KNVRDRKRGKTN---------EPFVCFECGEPN 286
Query: 305 HFKNECPDIKKVQRKPPFK-------------KKAMITWDDMEESDSQEDADTDMGLMAQ 351
H + CP +KK K K KKA+ E D D+D
Sbjct: 287 HKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD------ 340
Query: 352 SDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDE 411
DD++E K D + + L ++ N C +++ + E E+ + D
Sbjct: 341 -DDDQE----KGDKDFSGM-----CCLANNEDFINLCLMALEDKDDSSEHPEVCLD--DI 388
Query: 412 SRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKS 471
+ DS D E+++++ + + E+ + K ++E LK + G
Sbjct: 389 PSLDGSLCDDSCSDNDSVDDELSKERMAHLMI--EISDKYRSSKYKIEKLKSENDGMALE 446
Query: 472 TETFQNIVGSQNK-STKKSGLG----FKDPSK--IIGSFVPKAKIRVKCCFCDKYGHNES 524
++++ ++ ST S L KD K +G+ P + C C + +
Sbjct: 447 IARLRSMIPEEDTCSTCASYLSEINLLKDKLKSCALGAGNP-SSASAACSTCYEMKVDMG 505
Query: 525 VCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTF---RKD 581
+ ++ K +K+ ++ + R E+ + +D RQ V + D
Sbjct: 506 LLEMELKELKEKFVH-----DRIGRCENCP---------ILTSDNDELRQQVAMLRTKND 551
Query: 582 LLEELTFKDPTLHGLDSGCS 601
LLE K+P +H + C+
Sbjct: 552 LLESFATKEP-IHSSCANCA 570
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 707 bits (1825), Expect = 0.0
Identities = 357/673 (53%), Positives = 465/673 (69%), Gaps = 29/673 (4%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDE 929
VFGC C++L + L KF+ +S IFLGY+T S+ YRVY L T + + + FDE
Sbjct: 1197 VFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASP 1255
Query: 930 HSKPK-----------------ENEDTEVPTLQNVP-VQNTENTVEKEDDQNAQ------ 965
++P+ +++D+ P L + P VQ T + +A
Sbjct: 1256 GARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSSA 1315
Query: 966 ----DQSFQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPKSINEAI 1021
D P + HP D +IG + V S++ N A ++ EPK++ A+
Sbjct: 1316 AEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCHAL 1375
Query: 1022 IDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQ 1081
D++W+ AM EEL FERNKVW+LV +IGT+WVF+NKL E+G +VRNKARLVAQ
Sbjct: 1376 SDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQ 1435
Query: 1082 GYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQP 1141
G+ Q EG+D++ETFAPVARLEAIRILLA+AA K KLFQMDVKSAFLNG + EEVYV QP
Sbjct: 1436 GFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQP 1495
Query: 1142 PGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDL 1201
PGF N + PNHVFKL KALYGLKQAPRAWY+RL TFL++NGF G +D TLF D
Sbjct: 1496 PGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDF 1555
Query: 1202 LIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEK 1261
L+VQ+YVDDIIFG + + +FS++M EFEMSMMGEL FFLGLQIKQ GIF+ Q K
Sbjct: 1556 LLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTK 1615
Query: 1262 YVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVF 1321
Y K++LKK+ M + K ++TPM +SSL DE G+ + ++EYR MIGSLLYLTASRPDI F
Sbjct: 1616 YSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHF 1675
Query: 1322 AVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVER 1381
+V LCARFQ + SH AVKR+FRY+ T + G+WY S+ + A+ DAD+AG K++R
Sbjct: 1676 SVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDR 1735
Query: 1382 KSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTS 1441
KSTSG+C FLG +L+ WS RKQ+++A ST EAEYV+AAS CSQ+LW+ + L+DY L ++
Sbjct: 1736 KSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSG 1795
Query: 1442 VPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKP 1501
VP+ CDNTSAIN++KNP+QHSR+KHIEI++HF+RD+V+K I L FV++E QLADIFTKP
Sbjct: 1796 VPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKP 1855
Query: 1502 LVEDRFNFLKEKL 1514
L RF FL+ +L
Sbjct: 1856 LDRSRFEFLRSEL 1868
Score = 214 bits (545), Expect = 2e-53
Identities = 159/560 (28%), Positives = 259/560 (45%), Gaps = 80/560 (14%)
Query: 368 KDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQN---KYDESRKTIKILQDSH- 423
KD + IDS+ S + C SL +L K+E LQ ++ + +K + ++ D
Sbjct: 577 KDAKTVIDSI--KSIDSCSSCISLKVDLESAKKENSYLQQSLERFAQGKKKLNMILDQSK 634
Query: 424 ---------FDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKSTET 474
+D +E R + G+ E+ ++ I K GFI +T +
Sbjct: 635 VSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPITFKS---------AGFIGNTSS 685
Query: 475 FQ------NIVGSQNKSTKKSGLGFKDPSKIIGS-----FVPKAKIRVKCCFCDKYGHNE 523
+V +KS K+P ++ P K + +C +C K GH
Sbjct: 686 STPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLV 745
Query: 524 SVCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSD---HKRQNVTFRK 580
C K + +Q L R+ + + + + ++C S R++V R+
Sbjct: 746 GFCFRKARKERQERL----------RTRRATRVPERFECAYHCRSSGVSRFPRRDVHPRR 795
Query: 581 DLL-------------------EELTFKDPTLHGL--------DSGCSRHMTGDRDCFLT 613
DL + T + + G+ DSGCSRHMTG+ F +
Sbjct: 796 DLAGLGQNRHGHLAYNSAHNTKDACTSRTDSDFGVGRSNSWLVDSGCSRHMTGEAKWFTS 855
Query: 614 FEKKDGG-LVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEV 672
+ +TFG+ G++ KGTI + +++V V LK+NLLS+SQLCD EV
Sbjct: 856 LTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLEV 915
Query: 673 IFKPNICEVRQTSSNKLFFSGSRRKNLYVLELNDM---PAESCFMSLEKDKWIWHKRAGH 729
FK + V S + +F SR ++ + P+ S +D + WH+R GH
Sbjct: 916 RFKKDRSRVLDASESPVF-DISRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLGH 974
Query: 730 ISMKTIAKLSQLDLVRGLPKISFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHID 789
I ++++S +DL+RGLPK+ KD +C C GK SS K + + T P +LLH+D
Sbjct: 975 IGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMD 1034
Query: 790 LFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITV 849
GP + S+ GK Y V+VDDFSR++WV FL+ K+E+F FQ+ + + E + +
Sbjct: 1035 TVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRAI 1094
Query: 850 RSDHGGEFENASFKTFFDEN 869
RSD+G EF+N++F++F D +
Sbjct: 1095 RSDNGSEFKNSAFESFCDSS 1114
Score = 141 bits (355), Expect = 2e-31
Identities = 148/620 (23%), Positives = 263/620 (41%), Gaps = 86/620 (13%)
Query: 13 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKA 72
S +P +FDG N+ WK +ME +L+SQ +++W + + VP + + + A
Sbjct: 6 SAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMA 57
Query: 73 QVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFE 132
QV N +AR + ++ E RV +A +W L HEG + ++ R + ++++
Sbjct: 58 QVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQ 117
Query: 133 VFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLP-SMWRPMVTAITQAK 191
FEM E+ID + RF I++++RS+GK +S +D R +L CL +W VT+IT++
Sbjct: 118 RFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESA 177
Query: 192 DLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQEPQELEEVH- 250
L + ++ L L+ HE+ + K +K L S TSS D V L +H
Sbjct: 178 PLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAALHS 237
Query: 251 ------EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 304
E+ ED+LAL +++ R +N +K KTN C+ C +
Sbjct: 238 VTEEQLEKIPEDDLALFARKFSRAY--KNVRDRKRGKTN---------EPFVCFECGEPN 286
Query: 305 HFKNECPDIKKVQRKPPFK-------------KKAMITWDDMEESDSQEDADTDMGLMAQ 351
H + CP +KK K K KKA+ E D D+D
Sbjct: 287 HKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD------ 340
Query: 352 SDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDE 411
DD++E K D + + L ++ N C +++ + E E+ + D
Sbjct: 341 -DDDQE----KGDKDFSGM-----CCLANNEDFINLCLMALEDKDDSSEHPEVCLD--DI 388
Query: 412 SRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKS 471
+ DS D E+++++ + + E+ + K ++E LK + G
Sbjct: 389 PSLDGSLCDDSCSDNDSVDDELSKERMAHLMI--EISDKYRSSKYKIEKLKSENDGMALE 446
Query: 472 TETFQNIVGSQNK-STKKSGLG----FKDPSK--IIGSFVPKAKIRVKCCFCDKYGHNES 524
++++ ++ ST S L KD K +G+ P + C C + +
Sbjct: 447 IARLRSMIPEEDTCSTCASYLSEINLLKDKLKSCALGAGNP-SSASAACSTCYEMKVDMG 505
Query: 525 VCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTF---RKD 581
+ ++ K +K+ ++ + R E+ + +D RQ V + D
Sbjct: 506 LLEMELKELKEKFVH-----DRIGRCENCP---------ILTSDNDELRQQVAMLRTKND 551
Query: 582 LLEELTFKDPTLHGLDSGCS 601
LLE K+P +H + C+
Sbjct: 552 LLESFATKEP-IHSSCANCA 570
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 699 bits (1803), Expect = 0.0
Identities = 352/681 (51%), Positives = 465/681 (67%), Gaps = 29/681 (4%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDE 929
VFGC CYI +L KF+ + D+ LGY++ SK YRVYN VE + + FDE +
Sbjct: 729 VFGCKCYIYRKGIRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQFDETNG 788
Query: 930 HSKPKENEDT-------------EVPTLQNVPVQNTENTVEKEDDQNA----------QD 966
+ EN D + ++ + V++ +T +++ + ++
Sbjct: 789 SQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSASPSQAQVEVEE 848
Query: 967 QSFQSPPRSWR----MVGDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEA 1020
+ Q PP R + DHP DQ++G + GV+TR + + +S +EPK ++EA
Sbjct: 849 EKAQDPPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRIASICEHYSFVSCLEPKHVDEA 908
Query: 1021 IIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVA 1080
+ D W+ AM EEL+ F RNKVW LV +D +IGT+W+FRNK DE G VVRNKARLVA
Sbjct: 909 LCDLDWMNAMHEELNNFARNKVWTLVERPRDHNVIGTKWIFRNKQDENGLVVRNKARLVA 968
Query: 1081 QGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQ 1140
QG Q EG+D+ ETFAPVARLEAIRILLA+A+ IKLFQMDVKS FLNG + E V+V Q
Sbjct: 969 QGVTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSVFLNGEIAELVFVEQ 1028
Query: 1141 PPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTD 1200
PPGF + + PNHV+KL+KALYGLKQAPRAWY+RL FL+ F GK+DTTLF K D
Sbjct: 1029 PPGFEDPKNPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDD 1088
Query: 1201 LLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQE 1260
+ Q+YVD IIFG+T C+EF ++M EF+MSM+GEL FFLGLQIKQ +G F+SQ
Sbjct: 1089 FFVCQIYVDGIIFGSTNEVFCKEFGDMMSREFDMSMIGELSFFLGLQIKQLKDGTFVSQT 1148
Query: 1261 KYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIV 1320
KY+KD+LK++ + +AK + TPM + LD DE GK + K YR MIGSLLYLTASRPDI+
Sbjct: 1149 KYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIM 1208
Query: 1321 FAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVE 1380
F+V +CARFQ KE HL AVKRI RYL ++++GLWY KG+ F LV Y +DYA KV+
Sbjct: 1209 FSVCMCARFQAAPKECHLVAVKRILRYLKHSSNIGLWYPKGAKFKLVGYSYSDYASCKVD 1268
Query: 1381 RKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYT 1440
RKSTSGSCQ LG++L+ WS +KQN++ALST EA+YVSA SCC+Q+LW++ L DY + +T
Sbjct: 1269 RKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAKYVSAGSCCAQLLWMKQTLLDYGISFT 1328
Query: 1441 SVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTK 1500
P+ CDN SAI ++ NP+QHSR+KHI+I+HHF+RDHV K +I +S + TE+QLADIFTK
Sbjct: 1329 KTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTK 1388
Query: 1501 PLVEDRFNFLKEKLLIMKNPN 1521
PL E F L+ +L ++ N
Sbjct: 1389 PLDETCFYKLRNELNVIDFSN 1409
Score = 148 bits (373), Expect = 2e-33
Identities = 171/709 (24%), Positives = 297/709 (41%), Gaps = 120/709 (16%)
Query: 18 LFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDEKAQVLLN 77
+F+G+NY WK KM L++ +W+++ G A+ D + + LN
Sbjct: 1 MFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGF--------AITGTPLMEIDHR-NLQLN 51
Query: 78 SKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMS 137
++A L +L+ EE +RV A +W+ L HE TS K+ ++ ++E F M
Sbjct: 52 AQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEDTSEYKDAKLHFLKIQYETFSML 111
Query: 138 ENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRPMVTAITQAKDLKSMN 197
+E++++MY R IVN+++ LG Y+ + +K+LR LP + +VT + + D+ M
Sbjct: 112 PHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINS-DMSRMT 170
Query: 198 LEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQEPQELEEVHEEEAEDE 257
L+G + +++ K +++ + + K + V+D+ + E+ E+ E+E
Sbjct: 171 PASLLGKINTNDMYKLKKKEMEEASS-SKKCIALQAEVEDKSKSKVNEV----NEDLEEE 225
Query: 258 LALISKRIQRMMLRRNQIRKKFPKTNISIKTEADK--SQVTCYGCNKTGHFKNECPD--- 312
+ L++++ ++ RR + R + +N +K S + C+ C + GHF ++CP
Sbjct: 226 MVLLARKFNDLLGRRKE-RGRGSNSNRRRNRRPNKTFSNLRCFECCEKGHFASKCPSKDD 284
Query: 313 --------------IKKVQRKPPFKKKAMI-TWDDMEESDSQEDADTDMGLMAQSDDEE- 356
+ K +K K +A I WD EES + ++ + G A S ++
Sbjct: 285 DGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSTSSGSEEEGGDDASSKKKKM 344
Query: 357 -EVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDESRKT 415
V I + SL+ L L + S + LS+ + + + YDE
Sbjct: 345 AVVAIKEAPSLFAPL------------CLMAKGSSKVTSLSDSESDDDCDDVSYDE---L 389
Query: 416 IKILQDSHFDMSEKQ----REINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKS 471
+ + ++ H SEK+ + + + + + E++ + L E LK+ + +
Sbjct: 390 VSMFEELH-AYSEKEIVKFKALKKDHASLEVLYEELKISHERLTISHEKLKEAHDNLLST 448
Query: 472 TETFQNI-------------------VGSQNKSTKKSGL-GFKDPSKIIGSFVPKAKIRV 511
T+ +I V S + ST L PS S V I
Sbjct: 449 TQHGAHIDVGISCDLLDDNATCHIAHVASSSISTSCDDLMDMPSPSSSSSSCV---SICD 505
Query: 512 KCCFCDKYGHNESVCHVKKK----FIKQNNLN--LSSERSHLNRSESSQKAEKAKKTCF- 564
+ E V + K F +N L+ LS +R LN+ +K KK
Sbjct: 506 ASFVVENNELKEQVAKLNKSLERCFKGKNTLDKILSEQRFILNKEGFGFIPKKGKKPSHR 565
Query: 565 ----------YCNKSDHKRQNVTFRKDLLEELTFKDPTLHGLDSGCSRHMTGDRDCFLTF 614
YC+K V +R + LDSGC++HMTGDR F T
Sbjct: 566 ATRFVKSNGKYCSKCREVGHLVNYRTGGSHWV---------LDSGCTQHMTGDRAIFTTS 616
Query: 615 E--KKDGGLVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEGLKHNLLS 661
E + VTFG+N KGK + IEN G+KH L S
Sbjct: 617 EVGGNEQEKVTFGDNSKGK-----------NTNIENYCDDLGIKHELSS 654
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 697 bits (1798), Expect = 0.0
Identities = 354/690 (51%), Positives = 458/690 (66%), Gaps = 39/690 (5%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDE--- 926
VFG CYILN K + KF PK D LGY + YRV+N + VEI+ + FDE
Sbjct: 250 VFGSKCYILNKKARSSKFAPKVDGGFLLGYGSNECAYRVFNKTSGIVEIAPDVTFDETNG 309
Query: 927 -----YDEHS-------------------KPKENEDTEVPTLQNVPVQNTENTVEKEDDQ 962
D H +P+E + + Q P +T+
Sbjct: 310 SQVEQVDSHVLGEEEDPREAIKRLALGDVRPREPQQGASSSTQVEPPTSTQANDPSTSSL 369
Query: 963 NAQDQSFQSPPRSWRMVG---------DHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQ 1011
+ ++ Q PP S + DHPTD I+G GV TR + + + +S
Sbjct: 370 DQGEEGEQVPPSSINLAHPRIHQSIQRDHPTDNILGDINKGVSTRSHIANFCEHYSFVSS 429
Query: 1012 MEPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKV 1071
+EP + EA+ D W+ AM+EEL+ F RN+VW LV ++ + +IGT+W+FRNK DE G V
Sbjct: 430 LEPLRVEEALNDPDWVMAMQEELNNFTRNEVWTLVERSR-QNVIGTKWIFRNKQDEAGVV 488
Query: 1072 VRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGF 1131
+RNKARLVAQG+ Q EG+D+ ETFAPVARLE+IRILL +A + + KL+QMDVKSAFLNG
Sbjct: 489 IRNKARLVAQGFTQIEGLDFGETFAPVARLESIRILLTFATNLNFKLYQMDVKSAFLNGL 548
Query: 1132 LNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTT 1191
+NE VYV QPPGF + + PNHV+KL KALY LKQAPRAWY+ L FL++NGF GK D+T
Sbjct: 549 INELVYVEQPPGFKDPKYPNHVYKLHKALYELKQAPRAWYECLRNFLVKNGFEIGKADST 608
Query: 1192 LFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQH 1251
LF K H+ D+ + Q+YVDDIIFG+T EEFS +M FEMSMMGEL FFLGLQIKQ
Sbjct: 609 LFTKRHDNDIFVCQIYVDDIIFGSTNKSFSEEFSRMMTKRFEMSMMGELKFFLGLQIKQL 668
Query: 1252 SNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLY 1311
G FI Q KY+KD+LKK+ M AK + TPM + LD +E GK + +K YR +IGSLLY
Sbjct: 669 KEGTFICQTKYLKDMLKKFGMENAKPIHTPMPSNGHLDLNEQGKDVDQKVYRSIIGSLLY 728
Query: 1312 LTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCD 1371
L ASRPDI+ +V +CARFQ KE HL AVKRI RYLV T +LGLWY KG+ FDL+ Y D
Sbjct: 729 LCASRPDIMLSVCMCARFQAAPKECHLVAVKRILRYLVHTPNLGLWYPKGARFDLIGYAD 788
Query: 1372 ADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQ 1431
ADYAG KV+RKSTSG+CQFLG++L+ WS +KQN++ALST EAEY+S SCC+Q++W++
Sbjct: 789 ADYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVALSTAEAEYISTGSCCAQLIWMKQT 848
Query: 1432 LEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTE 1491
L DY L + +P+ CDN SAI ++ NP+QHSR+KHI+I+HHF+RDH + +I + V +
Sbjct: 849 LRDYGLNVSKIPLLCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHSTRGDIDIQHVRID 908
Query: 1492 NQLADIFTKPLVEDRFNFLKEKLLIMKNPN 1521
QLADIFTKPL E RF L+ +L I+ + N
Sbjct: 909 KQLADIFTKPLDEARFCELRSELNILDSRN 938
Score = 128 bits (321), Expect = 2e-27
Identities = 61/125 (48%), Positives = 80/125 (63%)
Query: 744 VRGLPKISFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKR 803
+ GL I FEKDR+C AC GKQ+ + ++T +PLELLH+DLFGP+ S+ G +
Sbjct: 42 ILGLTNIQFEKDRVCSACQAGKQIGAHHPVKNVMTTTRPLELLHMDLFGPIAYLSIGGNK 101
Query: 804 YGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFK 863
YG VIVDDFS FTWV FL K E+ F+ F +R QNE I +RSD+ EF+N +
Sbjct: 102 YGLVIVDDFSCFTWVFFLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNVKEFKNTCIE 161
Query: 864 TFFDE 868
+F DE
Sbjct: 162 SFLDE 166
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 696 bits (1795), Expect = 0.0
Identities = 347/648 (53%), Positives = 456/648 (69%), Gaps = 30/648 (4%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDE 929
VFGC C++L + L KF+ +S +FLGY ++GYRV L T + + + FDE
Sbjct: 790 VFGCKCFVLKSGN-LDKFEARSTDGLFLGYPAHTRGYRVLILGTNKIVETCEVSFDEASP 848
Query: 930 HSKPKENEDTEVPTLQNVPVQNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHPTDQIIG 989
++P + T + V+ ED + +D+S D+ D +G
Sbjct: 849 GTRPD--------------IAGTLSQVQGEDGRIFEDES------------DYDDDDEVG 882
Query: 990 STTDGV-RTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNKVWNLV 1046
S + R++++ D N A ++ EPK ++ A+ D+SWI AM EEL FERNKVW LV
Sbjct: 883 SAGERTTRSKVTTHDVCANSAFVASFEPKDVSHALTDESWINAMHEELENFERNKVWTLV 942
Query: 1047 PNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRI 1106
+IGT+WVF+NK +E+G +VRNKARLVAQG+ Q EG+D+DETFAPVAR+EAIR+
Sbjct: 943 EPPSGHNVIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRL 1002
Query: 1107 LLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQA 1166
LLA+AA K KL+QMDVKSAFLNGF+ EEVYV QPPGF N + PNHVFKL+KALYGLKQA
Sbjct: 1003 LLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQA 1062
Query: 1167 PRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSN 1226
PRAWYDRL FL+ GF+ GK+D TLF H + L VQ+YVDDIIFG + + +F+
Sbjct: 1063 PRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAE 1122
Query: 1227 LMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPSS 1286
M+ EFEMSMMGEL +FLGLQIKQ G F+ Q KY KD+L+++KM K +STP+ ++
Sbjct: 1123 TMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTA 1182
Query: 1287 SLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFR 1346
LD DE G+++ +KEYR MIGSLLYLTASRPDI FAV LCARFQ + SH AVKRI R
Sbjct: 1183 VLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRIMR 1242
Query: 1347 YLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTI 1406
YL T + G+WY SS L Y DAD+ G +++RKSTSG+C FLG +LI WS RKQ+++
Sbjct: 1243 YLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSV 1302
Query: 1407 ALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKH 1466
A ST E+EYV+AASCCSQILW+ + L+DY + + VP++CDNTSAIN++KNP+QHSR+KH
Sbjct: 1303 AQSTAESEYVAAASCCSQILWLLSTLKDYGITFEKVPLFCDNTSAINIAKNPVQHSRTKH 1362
Query: 1467 IEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
I+I+ HF+RDHV+K ++ L F+DT+ Q+ADIFTKPL +RF FL+ +L
Sbjct: 1363 IDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDSNRFAFLRGEL 1410
Score = 182 bits (461), Expect = 1e-43
Identities = 103/277 (37%), Positives = 160/277 (57%), Gaps = 5/277 (1%)
Query: 596 LDSGCSRHMTGDRDCFLTFEKKDGG-LVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEG 654
+DSG SRHMTGD++ F + +K + F + + G + ++NV V+
Sbjct: 431 VDSGDSRHMTGDKNWFSSLKKASKTESIVFADASTSAVVATGLVKVNEKFELKNVALVKD 490
Query: 655 LKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLELNDMPAE--SC 712
LK+NLLS+SQ+ D FEV FK +V + + + + SR + ++ + + + +C
Sbjct: 491 LKYNLLSVSQIVDENFEVHFKKTGSKVFDSCGDSVL-NISRYERVFKADFENSVSLVITC 549
Query: 713 FMS-LEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVKGKQVKSSF 771
++ +KD WH+R GH+ + +LS LDLVRGL K+ + D IC C K V +S
Sbjct: 550 LVAKFDKDVMFWHRRLGHVGFDHLTRLSGLDLVRGLSKLKKDLDLICTPCRHAKMVSTSH 609
Query: 772 KTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAF 831
I + T P +LLH+D GP + S+ GK Y VIVDDFSR++WV F+ KDE+F+ F
Sbjct: 610 APIVSVMTDAPGQLLHMDTVGPARVQSVGGKWYVLVIVDDFSRYSWVFFMTTKDEAFQHF 669
Query: 832 QNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDE 868
+ R++ E ++ +RSD+GGEF+NASF+ F +E
Sbjct: 670 RGLFLRLELEFPGSLKRIRSDNGGEFKNASFEQFCNE 706
Score = 120 bits (301), Expect = 4e-25
Identities = 80/320 (25%), Positives = 152/320 (47%), Gaps = 40/320 (12%)
Query: 13 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKAKSAWSTDE-K 71
S +P +FDG+++ W KM+ ++ +++ D+W +++ +P A +TD K
Sbjct: 8 STKPHIFDGTDFPHWCSKMQSYIMAENYDIWRKVSHPYVIP----------EAINTDALK 57
Query: 72 AQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKF 131
+ N KAR LS ++ + +RV A +W+ LK H+GT ++KE R D+ +++
Sbjct: 58 TEFENNCKARNILSSGISRSDYDRVAHLETAHEIWNALKNFHQGTKNIKELRRDLFKKEY 117
Query: 132 EVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCL-----PSMWRPMVTA 186
FEM E +D+ +RF I++++RS+ +Y + +I R S+W VT+
Sbjct: 118 IKFEMKSGEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTS 177
Query: 187 ITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQEPQEL 246
I ++ ++ ++ L+ L L+ E+ + K K L S +S + D P L
Sbjct: 178 IQESVNMSTLTLDSLYTKLKTREMNILSRKVDSKSSAL---VSSSSSLIVDASSSMPSFL 234
Query: 247 -------EEVHEEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYG 299
++ E+ E++LAL++ RI R M ++ P C+
Sbjct: 235 AAFNATSDDQLEQIEEEDLALVANRIARAMNNARNRKRGGPN--------------RCFE 280
Query: 300 CNKTGHFKNECPDIKKVQRK 319
C H ++ CP + + +R+
Sbjct: 281 CGSIDHLRSHCPKLGRGKRE 300
>ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209450|gb|AAO37468.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1128
Score = 693 bits (1789), Expect = 0.0
Identities = 420/994 (42%), Positives = 564/994 (56%), Gaps = 99/994 (9%)
Query: 596 LDSGCSRHMTGDRDCFLTFEK--KDGGLVTFGNNDKGKIRG---KGTIGNLNSARIENV- 649
LDS C++ MTGDR F TFE K+ VTFG+N K + G K + G L R+ +V
Sbjct: 164 LDSVCTQRMTGDRAMFTTFEVEGKEQEKVTFGDNSKRNVIGLVAKTSFGWLWHRRLAHVG 223
Query: 650 --QYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSN-------KLFFSGSRRKNLY 700
Q + K +L + L D FE K +C Q S K S SR L
Sbjct: 224 MNQLSKLSKRDL--VVGLKDVKFE---KDKLCSACQASKQVACSHPTKSIMSTSRPLELL 278
Query: 701 VLEL------NDMPAESCFMSLEKD----KWIWHKRAGHIS---MKTIAKLSQLDLVRGL 747
++L + S + + D W++ I K AK +Q + L
Sbjct: 279 HMDLFGPTTYKSIGGNSHCLVIVDDYSCYTWVFFLHDKCIVAELFKKFAKRAQNEFSCTL 338
Query: 748 PKISFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLH--IDLFGPVQTASLTGKRYG 805
KI + S FK L + H + P Q + K
Sbjct: 339 VKIRSDNG-------------SKFKNTNIEDYCDDLSIKHELSATYSPQQNGVVERKNRT 385
Query: 806 FV-----IVDDF--SRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFE 858
+ ++D++ S W + + + R+ + Y +I R + F
Sbjct: 386 LIEMARTMLDEYGVSDSFWAEAINTACHATNRL--YLHRLLKKTSYELIVGRKPNVAYFR 443
Query: 859 NASFKTFFDENVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEI 918
VFGC CYI +L KF+ + D+ LGY++ SK YRVYN VE
Sbjct: 444 -----------VFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEE 492
Query: 919 SMHIIFDEYDEHS--------------------------KPKENEDTEVPTLQNVPVQNT 952
+ + FDE + KP E ED + Q+ P +
Sbjct: 493 TADVQFDETNGSQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSA 552
Query: 953 ENTVEKEDDQNAQDQSFQSPPRSWRMVG-DHPTDQIIGSTTDGVRTRLSFQD--NNMAMI 1009
+ + + + + Q PPR + + DHP DQ++G + GV+TR + + +
Sbjct: 553 SPSQAQVEVEKEKAQDPPMPPRIYTALSKDHPIDQVLGDISKGVQTRSPVASICEHYSFV 612
Query: 1010 SQMEPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEG 1069
S +EPK ++EA+ D W+ A+ EEL+ F RNKVW LV +D +IGT+WVFRNK DE
Sbjct: 613 SCLEPKHVDEALYDPDWMNAIHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENR 672
Query: 1070 KVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLN 1129
VVRNKARLVAQG+ Q E +D+ ETF PVARLEAIRILLA+A+ IKLFQMDVKSAFLN
Sbjct: 673 LVVRNKARLVAQGFTQVEDLDFGETFGPVARLEAIRILLAFASCFDIKLFQMDVKSAFLN 732
Query: 1130 GFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKID 1189
G + E V+V QPPGF + + PNHV+KL+KALYGLKQAPRAWY+RL FL+ F GK+D
Sbjct: 733 GEIAELVFVEQPPGFDDPKYPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVD 792
Query: 1190 TTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIK 1249
TTLF K D + Q+YVDDIIFG+T C+EF ++M EFEMSM+ EL FFLGLQIK
Sbjct: 793 TTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIEELSFFLGLQIK 852
Query: 1250 QHSNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSL 1309
Q +G F+SQ KY+KD+LK++ + +AK + TPM + LD DE GK + K YR MIGSL
Sbjct: 853 QLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNWHLDLDEGGKPVDLKLYRSMIGSL 912
Query: 1310 LYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAY 1369
LYLTASRPDI+F+V + ARFQ KE HL AVKRI RYL ++ + LWY KG+ F LV Y
Sbjct: 913 LYLTASRPDIMFSVCMYARFQAAPKECHLVAVKRILRYLKHSSTISLWYPKGAKFKLVGY 972
Query: 1370 CDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVR 1429
D+DYAG KV+RKSTSGSCQ LG++L+ WS +KQN++ALST EAEY+SA SCC+Q+LW++
Sbjct: 973 SDSDYAGYKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYISAGSCCAQLLWMK 1032
Query: 1430 NQLEDYSLRY--TSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSF 1487
L DY + + T P+ C+N S I ++ NP+QH R+KHI+I+HHF+ DHV K +I +S
Sbjct: 1033 QILLDYGISFTETQTPLLCNNDSTIKIANNPVQHFRTKHIDIRHHFLTDHVAKCDIVISH 1092
Query: 1488 VDTENQLADIFTKPLVEDRFNFLKEKLLIMKNPN 1521
+ TE+QLADIFTKPL E RF L+ +L ++ N
Sbjct: 1093 IRTEDQLADIFTKPLDETRFCKLRNELNVINFSN 1126
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 684 bits (1766), Expect = 0.0
Identities = 345/653 (52%), Positives = 452/653 (68%), Gaps = 11/653 (1%)
Query: 869 NVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYD 928
++FG CYIL ++E+ K DPKSD IFLGYST S+ YRV+N +T+TV S++++ D+
Sbjct: 920 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLS 979
Query: 929 EHSKPKENEDTEVPTLQNVPV-----QNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHP 983
K ED NV +N EN+ D+ N +S R +M HP
Sbjct: 980 PARKKDVEEDVRTSG-DNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKM---HP 1035
Query: 984 TDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNK 1041
+ IIG GV TR + +N +S++EPK++ EA+ D+ WI AM+EEL QF+RN+
Sbjct: 1036 KELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNE 1095
Query: 1042 VWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARL 1101
VW LVP + +IGT+W+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARL
Sbjct: 1096 VWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARL 1155
Query: 1102 EAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALY 1161
E+IR+LL A KL+QMDVKSAFLNG+LNEEVYV QP GF + P+HV++L KALY
Sbjct: 1156 ESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALY 1215
Query: 1162 GLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMC 1221
GLKQAPRAWY+RL+ FL + G+ +G ID TLF K +L+I Q+YVDDI+FG +M
Sbjct: 1216 GLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1275
Query: 1222 EEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTP 1281
F MQSEFEMS++GEL +FLGLQ+KQ + IF+SQ +Y K+I+KK+ M A TP
Sbjct: 1276 RHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTP 1335
Query: 1282 MHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAV 1341
L KDE+G S+ +K YR MIGSLLYLTASRPDI +AVG+CAR+Q K SHL V
Sbjct: 1336 APTHLKLSKDEAGTSVDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQV 1395
Query: 1342 KRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCR 1401
KRI +Y+ GT+D G+ Y SS LV YCDAD+AG +RKSTSG C +LG LI W +
Sbjct: 1396 KRILKYVNGTSDYGIMYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSK 1455
Query: 1402 KQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQH 1461
KQN ++LST EAEY++A S CSQ++W++ L++Y++ + +YCDN SAIN+SKNP+QH
Sbjct: 1456 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 1515
Query: 1462 SRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
SR+KHI+I+HH+IRD V K I L VDTE Q+ADIFTK L ++F L+ KL
Sbjct: 1516 SRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKL 1568
Score = 387 bits (995), Expect = e-105
Identities = 277/882 (31%), Positives = 428/882 (48%), Gaps = 78/882 (8%)
Query: 9 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPT--NKEGA----VKA 62
EGG NRPP+ DGSNY +WK +M FL+S D+ W + G P + EG +K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 63 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKET 122
+ W+ +E L NSKA L + ++ CT AK + LK HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMS 125
Query: 123 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRP 182
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 183 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQE 242
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK + LA ++ DE ++
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRAEKKSKNLAFVSN-------DEGEED 237
Query: 243 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRK--------------KFPKTNISIKT 288
+L+ +E + + L+ K+ +++ R ++ +K K+ K + +K
Sbjct: 238 EYDLDT--DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRS-DVKP 294
Query: 289 EADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGL 348
K + C+GC GH ECP K RK + +ESDS D + +G+
Sbjct: 295 SHSKG-IQCHGCEGYGHIIAECPTHLKKHRKG--LSVCQSDTESEQESDSDRDVNALIGI 351
Query: 349 MAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNK 408
++D + ++ + +L L S + + L K +++++ EKE + +
Sbjct: 352 FETAEDSSDT---DSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEE 408
Query: 409 YDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGF 468
E + + L +M++ + +N+ S+ E +LL K + GF
Sbjct: 409 ISELKGEVGFLNSKLENMTKSIKMLNKG--------SDTLDEVLLLGKNAGNQRG--LGF 458
Query: 469 IKSTE---TFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRV-KCCFCDKYGHNES 524
+ T V ++N++ + S+ G K+K + +C +C KYGH +
Sbjct: 459 NPKSAGRTTMTEFVPAKNRTGATMS---QHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKP 515
Query: 525 VCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRKDLLE 584
C+ +L H +S +S+K K +K+ + + R E
Sbjct: 516 FCY-----------HLHGHPHHGTQSSNSRK----KMMWVPKHKAVSLVVHTSLRASAKE 560
Query: 585 ELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGKIRGKGTIGNLNSA 644
+ LDSGCSRHMTG ++ L E VTFG+ KGKI G G + +
Sbjct: 561 DWY--------LDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLP 612
Query: 645 RIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLEL 704
+ V V+GL NL+SISQLCD GF V F + C V S L + N Y+
Sbjct: 613 SLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTP 672
Query: 705 NDMPAES-CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVK 763
+ S C S E + IWH+R GH+ ++ + K+ VRG+P + E+ RIC C
Sbjct: 673 QETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGECQI 732
Query: 764 GKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKH 823
GKQVK S + ++ +T + LELLH+DL GP+Q SL GKRY +V+VDDFSRFTWV F++
Sbjct: 733 GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIRE 792
Query: 824 KDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 865
K +FE F+ R+Q EK I +RSDHG EFEN+ F F
Sbjct: 793 KSGTFEVFKKLSLRLQREKDCVIKRIRSDHGREFENSRFTEF 834
>emb|CAE05094.3| OSJNBa0009K15.14 [Oryza sativa (japonica cultivar-group)]
Length = 845
Score = 684 bits (1766), Expect = 0.0
Identities = 343/681 (50%), Positives = 458/681 (66%), Gaps = 29/681 (4%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDE 929
VFGC CYI +L KF+ + D+ LGY++ SK YRVYN VE + + FDE +
Sbjct: 163 VFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKSIVEETDDVQFDETNG 222
Query: 930 HSKPKENEDT-------------EVPTLQNVPVQNTENTVEKEDDQ----------NAQD 966
+ EN D + ++ + V++ +T +++ ++
Sbjct: 223 SQEGHENLDDVGDEGLMRAMKNMSIGDVKLIEVEDKPSTSTQDEPSISATPSQAQVEVEE 282
Query: 967 QSFQSPPRSWR----MVGDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEA 1020
+ Q PP R + DHP DQ++G + GV+TR + + +S +EPK ++EA
Sbjct: 283 EKAQDPPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVASICEHYSFVSCLEPKHVDEA 342
Query: 1021 IIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVA 1080
+ D W+ AM EEL+ F RNKVW + +D +IGT+WVFRNK DE G VVRNKARLVA
Sbjct: 343 LCDPDWMNAMHEELNNFARNKVWTFIERPRDHNVIGTKWVFRNKQDENGLVVRNKARLVA 402
Query: 1081 QGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQ 1140
Q + + EG+D+ ETFAPV RLE IRILLA+A+ IKLFQMDVKSAFLNG + E V+V Q
Sbjct: 403 QAFTRVEGLDFGETFAPVTRLEVIRILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQ 462
Query: 1141 PPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTD 1200
PPGF + + PNH++K +KALYGLKQAPR WY+RL FL+ F GK+DTTLF K D
Sbjct: 463 PPGFEDPKNPNHIYKFSKALYGLKQAPRVWYERLRDFLLSKDFKIGKVDTTLFTKIIGDD 522
Query: 1201 LLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQE 1260
+ Q+YVDDIIFG+T C+EF +++ EFE+SM+GEL FFL LQIKQ +G+F+SQ
Sbjct: 523 FFVCQIYVDDIIFGSTNEVFCKEFGDMISREFEISMIGELSFFLTLQIKQLKDGMFVSQT 582
Query: 1261 KYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIV 1320
KY+K +LK++ + +AK + TPM + LD D GK + K YR MIGSLLYLTASRPDI+
Sbjct: 583 KYIKYLLKRFGLEDAKPIKTPMATNGHLDLDGGGKPVDLKLYRSMIGSLLYLTASRPDIM 642
Query: 1321 FAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVE 1380
F+V +CARFQ KE HL AVKRI RYL ++ +GLWY K + F LV Y D+DYA KV+
Sbjct: 643 FSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKSAKFKLVGYSDSDYASCKVD 702
Query: 1381 RKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYT 1440
RKSTSGSCQ LG++L+ WS +KQN +ALST EAEYVSA SCC+Q+LW++ L DY + +T
Sbjct: 703 RKSTSGSCQMLGRSLVSWSSKKQNFVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFT 762
Query: 1441 SVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTK 1500
P+ CDN SAI ++ NP+QHSR+KHI+I+HHF+RDHV K +I +S + TE+QLA+IFTK
Sbjct: 763 KTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLAEIFTK 822
Query: 1501 PLVEDRFNFLKEKLLIMKNPN 1521
PL E RF L+ +L ++ N
Sbjct: 823 PLDETRFCKLRNELNVIDFSN 843
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 682 bits (1760), Expect = 0.0
Identities = 347/654 (53%), Positives = 455/654 (69%), Gaps = 13/654 (1%)
Query: 869 NVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYD 928
++FG CYIL ++E+ K DPKSD IFLGYST S+ YRV+N +T+TV S++++ D+
Sbjct: 920 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLS 979
Query: 929 EHSKPKENEDTEVPTL-QNVPV-----QNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDH 982
K ED V TL NV +N EN+ D+ N +S R +M H
Sbjct: 980 PARKKDVEED--VRTLGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKM---H 1034
Query: 983 PTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERN 1040
P + IIG GV TR + +N +S++EPK++ EA+ D+ WI AM+EEL QF+RN
Sbjct: 1035 PKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRN 1094
Query: 1041 KVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVAR 1100
+VW LVP + +IGT+W+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVAR
Sbjct: 1095 EVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVAR 1154
Query: 1101 LEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKAL 1160
LE+IR+LL A KL+QMDVKSAFLNG+LNEEVYV QP GF + P+HV++L KAL
Sbjct: 1155 LESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKAL 1214
Query: 1161 YGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKM 1220
YGLKQAPRAWY+RL+ FL + G+ +G ID TLF K +L+I Q+YVDDI+FG +M
Sbjct: 1215 YGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEM 1274
Query: 1221 CEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMST 1280
F MQSEFEMS++GEL +FLGLQ+KQ + IF+SQ +Y K+I+KK+ M A T
Sbjct: 1275 LRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRT 1334
Query: 1281 PMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTA 1340
P L KDE+G S+ + YR MIGSLLYLTASRPDI +AVG+CAR+Q K SHLT
Sbjct: 1335 PAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQ 1394
Query: 1341 VKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSC 1400
VKRI +Y+ GT+D G+ Y S+ LV YCDAD+AG +RKSTSG C +LG LI W
Sbjct: 1395 VKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFS 1454
Query: 1401 RKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQ 1460
+KQN ++LST EAEY++A S CSQ++W++ L++Y++ + +YCDN SAIN+SKNP+Q
Sbjct: 1455 KKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQ 1514
Query: 1461 HSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
HSR+KHI+I+HH+IRD V K I L VDTE Q+ADIFTK L ++F L+ KL
Sbjct: 1515 HSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKL 1568
Score = 398 bits (1023), Expect = e-109
Identities = 283/907 (31%), Positives = 424/907 (46%), Gaps = 128/907 (14%)
Query: 9 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPT--NKEGA----VKA 62
EGG NRPP+ DGSNY +WK +M FL+S D+ W + G P + EG +K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 63 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKET 122
+ W+ +E L NSKA L + ++ CT AK W+ LKI HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMS 125
Query: 123 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRP 182
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 183 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQE 242
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK + LA ++ DE ++
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRAEKKSKNLAFVSN-------DEGEED 237
Query: 243 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRK--------------KFPKTNISIKT 288
+L+ +E + + L+ K+ +++ R ++ +K K+ K + +K
Sbjct: 238 EYDLDT--DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRS-DVKP 294
Query: 289 EADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGL 348
K + C+GC GH ECP K RK + +ESDS D + G+
Sbjct: 295 SHSKG-IQCHGCEGYGHIIAECPTHLKKHRKG--LSVCQSDTESEQESDSDRDVNALTGI 351
Query: 349 MAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNK 408
++D + D E D L L + ++++ +++K
Sbjct: 352 FETAEDSSDT----------DSEITFDELAASYRKLCIKSEKILQQEAQLK--------- 392
Query: 409 YDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGF 468
K++ D + + EI SE++ E L ++ET+KK +
Sbjct: 393 --------KVIADLEAEKEAHEEEI-----------SELKGEVGFLNSKLETMKKSIKML 433
Query: 469 IKSTETFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRVKCCFCDKYGHNESVCHV 528
K ++T ++ + + GLGF PK R
Sbjct: 434 NKGSDTLDEVLLLGKNAGNQRGLGFN----------PKFAGRT----------------T 467
Query: 529 KKKFIKQNNLNLSSERSHLNRSESSQ--KAEKAKKTCFYCNKSDHKR------------- 573
+F+ N ++ HL+R +Q K+++ K C YC K H +
Sbjct: 468 MTEFVPAKNRTGTTMSQHLSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG 527
Query: 574 -QNVTFRKDLLEELTFKDPTL-------------HGLDSGCSRHMTGDRDCFLTFEKKDG 619
Q+ RK ++ K +L LDSGCSRHMTG ++ L E
Sbjct: 528 TQSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCST 587
Query: 620 GLVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNIC 679
VTFG+ KGKI G G + + + V V+GL NL+SISQLCD GF V F + C
Sbjct: 588 SYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC 647
Query: 680 EVRQTSSNKLFFSGSRRKNLYVLELNDMPAES-CFMSLEKDKWIWHKRAGHISMKTIAKL 738
V S L + N Y+ + S C S E + IWH+R GH+ ++ + K+
Sbjct: 648 LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKI 707
Query: 739 SQLDLVRGLPKISFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTAS 798
VRG+P + E+ RIC C GKQVK S + + +T + LELLH+DL GP+Q S
Sbjct: 708 IDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVES 767
Query: 799 LTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFE 858
L GKRY +V+VDDFSRFTWV F++ K E+FE F+ R+Q EK I +RSDHG EFE
Sbjct: 768 LGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFE 827
Query: 859 NASFKTF 865
N+ F F
Sbjct: 828 NSRFTEF 834
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 682 bits (1759), Expect = 0.0
Identities = 344/653 (52%), Positives = 452/653 (68%), Gaps = 11/653 (1%)
Query: 869 NVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYD 928
++FG CYIL ++E+ K DPKSD IFLGYST S+ YRV+N +T+TV S++++ D+
Sbjct: 918 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLS 977
Query: 929 EHSKPKENEDTEVPTLQNVPV-----QNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHP 983
K ED NV +N EN+ D+ N +S R +M HP
Sbjct: 978 PARKKDVEEDVRTSG-DNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKM---HP 1033
Query: 984 TDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNK 1041
+ IIG GV TR + +N +S++EPK++ EA+ D+ WI AM+EEL QF+RN+
Sbjct: 1034 KELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNE 1093
Query: 1042 VWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARL 1101
VW LVP + +IGT+W+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARL
Sbjct: 1094 VWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARL 1153
Query: 1102 EAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALY 1161
E+IR+LL A KL+QMDVKSAFLNG+LNEEVYV QP GF + P+HV++L KALY
Sbjct: 1154 ESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALY 1213
Query: 1162 GLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMC 1221
GLKQAPRAWY+RL+ FL + G+ +G ID TLF K +L+I Q+YVDDI+FG +M
Sbjct: 1214 GLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1273
Query: 1222 EEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTP 1281
F MQSEFEMS++GEL +FLGLQ+KQ + IF+SQ +Y K+I+KK+ M A TP
Sbjct: 1274 RHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTP 1333
Query: 1282 MHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAV 1341
L KDE+G S+ + YR MIGSLLYLTASRPDI +AVG+CAR+Q K SHLT V
Sbjct: 1334 APTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQV 1393
Query: 1342 KRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCR 1401
KRI +Y+ GT+D G+ Y S+ LV YCDAD+AG +RKSTSG C +LG LI W +
Sbjct: 1394 KRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSK 1453
Query: 1402 KQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQH 1461
KQN ++LST EAEY++A S CSQ++W++ L++Y++ + +YCDN SAIN+SKNP+QH
Sbjct: 1454 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 1513
Query: 1462 SRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
SR+KHI+I+HH+IRD V K I L VDTE Q+ADIFTK L ++F L+ KL
Sbjct: 1514 SRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKL 1566
Score = 397 bits (1019), Expect = e-108
Identities = 279/882 (31%), Positives = 425/882 (47%), Gaps = 80/882 (9%)
Query: 9 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPT--NKEGA----VKA 62
EGG NRPP+ DGSNY +WK +M FL+S D+ W + G P + EG +K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 63 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKET 122
+ W+ +E L NSKA L + ++ CT AK W+ LKI HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKIS 125
Query: 123 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSMWRP 182
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 183 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDEDVQE 242
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK + LA ++ D E
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRAEKKSKNLAFVSN---------DEGE 235
Query: 243 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRK--------------KFPKTNISIKT 288
E + +E + + L+ K+ +++ R ++ +K K+ K + +K
Sbjct: 236 EDEYDLNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKS-DVKP 294
Query: 289 EADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGL 348
K + C+GC GH ECP K RK + +ESDS D + G+
Sbjct: 295 SHSKG-IQCHGCEGYGHIIAECPTHLKKHRKG--LSVCQSDTESEQESDSDRDVNALTGI 351
Query: 349 MAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNK 408
++D + ++ + +L L S + + L K +++++ EKE + +
Sbjct: 352 FETAEDSSDT---DSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEE 408
Query: 409 YDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGF 468
E + + L +M++ + +N+ S+ E +LL K + GF
Sbjct: 409 ISELKGEVGFLNSKLENMTKSIKMLNKG--------SDTLDEVLLLGKNAGNQRG--LGF 458
Query: 469 IKSTE---TFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRV-KCCFCDKYGHNES 524
+ T V ++N++ + S+ G K+K + +C +C KYGH +
Sbjct: 459 NPKSAGRTTMTEFVPAKNRTGATMS---QHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKP 515
Query: 525 VCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRKDLLE 584
C+ HL+ +Q + KK + HK ++ L
Sbjct: 516 FCY------------------HLHPHHGTQSSNSRKKMMWV---PKHKAVSLVVHTSL-- 552
Query: 585 ELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGKIRGKGTIGNLNSA 644
+ K+ LDSGCSRHMTG ++ L E VTFG+ KGKI G G + +
Sbjct: 553 RASAKEDWY--LDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLP 610
Query: 645 RIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLEL 704
+ V V+GL NL+SISQLCD GF V F + C V S L + N Y+
Sbjct: 611 SLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTP 670
Query: 705 NDMPAES-CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVK 763
+ S C S E + IWH+R GH+ ++ + K+ VRG+P + E+ RIC C
Sbjct: 671 QETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQI 730
Query: 764 GKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKH 823
GKQVK S + ++ +T + LELLH+DL GP+Q SL GKRY +V+VDDFSRFTWV F++
Sbjct: 731 GKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVKFIRE 790
Query: 824 KDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 865
K E+FE F+ R+Q EK I +RSDHG EFEN+ F
Sbjct: 791 KSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRLTEF 832
>gb|AAL35396.1| Opie2a pol [Zea mays]
Length = 1048
Score = 676 bits (1745), Expect = 0.0
Identities = 345/697 (49%), Positives = 465/697 (66%), Gaps = 44/697 (6%)
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDE--- 926
VFG CYIL K + KF PK+ + LGY + +K YRV+N + VE+S ++FDE
Sbjct: 353 VFGSKCYILVKKGRTSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNG 412
Query: 927 -----------YDEHS--------------KPKENEDTEVP---TLQNVPVQNTENTVE- 957
DE +P+E+ + + P T+ + P Q+ E +
Sbjct: 413 SLREQVVNLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQPSSTTMVHPPTQDDEQAPQV 472
Query: 958 -------KEDDQNAQDQSFQSPPRSWRMV--GDHPTDQIIGSTTDGVRTRLSFQD--NNM 1006
+D Q ++++ Q+PP R +HP +QI+G + GV TR + +
Sbjct: 473 GAHDQGGAQDVQVEEEEAPQAPPTQVRATIQRNHPVNQILGDISKGVTTRSRLVNFCEHY 532
Query: 1007 AMISQMEPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLD 1066
+ +S +EP + E ++D W+ AM+EEL+ F+RN+VW LVP + + ++GT+WVFRNK D
Sbjct: 533 SFVSSIEPFRVEEVLLDPDWVLAMQEELNNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQD 591
Query: 1067 EEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSA 1126
E G V RNKARLVA+GY Q G+D++ETFAPVARL++IRI LAYAAH S +L+QMDVKSA
Sbjct: 592 EHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLKSIRIWLAYAAHHSFRLYQMDVKSA 651
Query: 1127 FLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRG 1186
FLNG + EEVYV QPPGF ++ P+HV KL+KALYGLKQAPRAWY+ L FLI N F G
Sbjct: 652 FLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVG 711
Query: 1187 KIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGL 1246
K D TLF KT + DL + Q+YVDDIIFG+T CEEFS +M +FEMSMMGEL +FLG
Sbjct: 712 KADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGF 771
Query: 1247 QIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMI 1306
Q++Q +G FISQ KY +D++K++ M +AK TPM D ++ GKS+ +K YR I
Sbjct: 772 QVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTI 831
Query: 1307 GSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDL 1366
GSLLYL ASRPDI+ +V +CARFQ+ +E HL AVKRI RYLV T G+WY KGS+FDL
Sbjct: 832 GSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDL 891
Query: 1367 VAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQIL 1426
+ Y D+DYA KV+RKSTS CQFLG++L+ W+ +KQ ++ALST EAEYV+ CC+Q+L
Sbjct: 892 IGYSDSDYARCKVDRKSTSRMCQFLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCCAQLL 951
Query: 1427 WVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALS 1486
W+R L D+ + VP+ CDN SAI +++NP++HSR+KHI+I+HHF+RDH QK I +
Sbjct: 952 WMRQTLRDFGYNLSEVPLLCDNESAIRIAENPVEHSRTKHIDIRHHFLRDHQQKGVIEVF 1011
Query: 1487 FVDTENQLADIFTKPLVEDRFNFLKEKLLIMKNPNKD 1523
V +EN LADIFTKPL E F L +L ++ + N D
Sbjct: 1012 HVSSENHLADIFTKPLDEQTFCKLHSELNVLDSRNLD 1048
Score = 204 bits (518), Expect = 2e-50
Identities = 108/269 (40%), Positives = 158/269 (58%), Gaps = 4/269 (1%)
Query: 604 MTGDRDCFLTFEK-KDG-GLVTFGNNDKGKIRGKGTIGNLNSARIENVQYVEGLKHNLLS 661
MTG++ F ++ K KD + FG+ ++GK++G G I + I NV VE L +N LS
Sbjct: 1 MTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISSEHSISNVFLVESLGYNFLS 60
Query: 662 ISQLCDSGFEVIFKPNICEVRQTSSNKLFFSGSRRKNLYVLELNDMPA--ESCFMSLEKD 719
+SQLC+ G+ +F V + S L F G LY+++ A ++C ++
Sbjct: 61 VSQLCNMGYNCLFTNVDVSVFRRSDGSLAFKGVLDGKLYLVDFAKEEAGLDACLIAKTSM 120
Query: 720 KWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDRICEACVKGKQVKSSFKTIEFIST 779
W+WH+R H+ MK + KL + + V GL + F+KDR C AC GKQV+ S T ++T
Sbjct: 121 GWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFKKDRPCVACQAGKQVRGSHHTKNVMTT 180
Query: 780 QKPLELLHIDLFGPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQ 839
+PLE+LH+DLFGPV S+ G +YG VIVDDFSRFTWV FL+ K E+ + + +R Q
Sbjct: 181 SRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRYLRRAQ 240
Query: 840 NEKGYNIITVRSDHGGEFENASFKTFFDE 868
NE + +RSD+G EF+N + F E
Sbjct: 241 NEFELKVKKIRSDNGSEFKNLQVEEFLVE 269
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 676 bits (1745), Expect = 0.0
Identities = 341/653 (52%), Positives = 448/653 (68%), Gaps = 11/653 (1%)
Query: 869 NVFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYD 928
++FG CYIL ++E+ K DPKSD IFLGYST S+ YRV+N +T+TV S++++ D+
Sbjct: 921 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLT 980
Query: 929 EHSKPKENEDTEVPTLQNVP-----VQNTENTVEKEDDQNAQDQSFQSPPRSWRMVGDHP 983
K ED NV +N EN+ D+ N + R +M HP
Sbjct: 981 PARKKDVEEDVRTSG-DNVADTAKSAENAENSDSATDEPNINQPDKRPSIRIQKM---HP 1036
Query: 984 TDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIKAMKEELSQFERNK 1041
+ IIG GV TR + +N +S++EPK++ EA+ D+ WI AM+EEL QF+RN+
Sbjct: 1037 KELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNE 1096
Query: 1042 VWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARL 1101
VW LVP + +IGT+W+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARL
Sbjct: 1097 VWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARL 1156
Query: 1102 EAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALY 1161
E+IR+LL A KL+QMDVKSAFLNG+LNEE YV QP GF++ P+HV++L KALY
Sbjct: 1157 ESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALY 1216
Query: 1162 GLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMC 1221
GLKQAPRAWY+RL+ FL + G+ +G ID TLF K +L+I Q+YVDDI+FG +M
Sbjct: 1217 GLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 1276
Query: 1222 EEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTP 1281
F MQSEFEMS++GEL +FLGLQ+KQ + IF+SQ KY K+I+KK+ M A TP
Sbjct: 1277 RHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTP 1336
Query: 1282 MHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAV 1341
L KDE+G S+ + YR MIGSLLYLTASRPDI +AVG+CAR+Q K SHL V
Sbjct: 1337 APTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQV 1396
Query: 1342 KRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCR 1401
KRI +Y+ GT+D G+ Y S LV YCDAD+AG +RKSTSG C +LG LI W +
Sbjct: 1397 KRILKYVNGTSDYGIMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSK 1456
Query: 1402 KQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQH 1461
KQN ++LST EAEY++A S CSQ++W++ L++Y++ + +YCDN SAIN+SKNP+QH
Sbjct: 1457 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 1516
Query: 1462 SRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRFNFLKEKL 1514
SR+KHI+I+HH+IR+ V K I L VDTE Q+ADIFTK L +F L+ KL
Sbjct: 1517 SRTKHIDIRHHYIRELVDDKVITLEHVDTEEQIADIFTKALDAKQFEKLRGKL 1569
Score = 397 bits (1020), Expect = e-108
Identities = 281/895 (31%), Positives = 429/895 (47%), Gaps = 103/895 (11%)
Query: 9 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNG---------DFVPTNKEGA 59
EGG NRPP+ DG+NY +WK +M FL+S D+ W + G + PTN+
Sbjct: 6 EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNE--- 62
Query: 60 VKAKSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHV 119
+K + W+ +E L NSKA L + ++ CT AK W+ LK HEGTS V
Sbjct: 63 LKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKV 122
Query: 120 KETRIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSM 179
K +R+ + KFE +M E E I + + I N +LG+ + +RKILR LP
Sbjct: 123 KMSRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKR 182
Query: 180 WRPMVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVRTLALKASQQTSSVDDED 239
+ VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK + LA ++ DE
Sbjct: 183 FDMKVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRTEKKSKNLAFVSN-------DEG 234
Query: 240 VQEPQELEEVHEEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISI----------KTE 289
++ +L+ +E + + + K+ +++ R ++ R+K NIS+ K++
Sbjct: 235 EEDEYDLDT--DEGLTNAVVFLGKQFNKVLNRMDR-RQKPHVRNISLDIRKGSEYQRKSD 291
Query: 290 ADKSQ---VTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDM 346
S + C GC GH K ECP K QRK + D ES+ + D+D D+
Sbjct: 292 EKPSHSKGIQCRGCEGYGHIKAECPTHLKKQRKG-----LSVCRSDDTESEQESDSDRDV 346
Query: 347 GLMA--------QSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLI------ 392
+ SD + E+ + Y++L K + +L L +L
Sbjct: 347 NALTGRFESAEDSSDTDSEITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAH 406
Query: 393 -KELSEIKEEKEILQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKEN 451
+E+S++K E L +K + K+IK+L DM ++ ++ +K + +
Sbjct: 407 EEEISKLKGEVGFLNSKLENMTKSIKMLNKGS-DMLDZVLQLGKKVGNQRGLGFNHKSAG 465
Query: 452 ILLKKEVETLKKDLTGFIKSTETFQNIVGSQNKSTKKSGLGFKDPSKIIGSFVPKAKIRV 511
E K TG S ++ G+Q K +K+ +
Sbjct: 466 RTTMTEFVPAKNS-TGATMSQHRSRHH-GTQQKRSKRK--------------------KW 503
Query: 512 KCCFCDKYGHNESVCHVKKKFIKQNNLNLSSERSHLNRSESSQKAEKAKKTCFYCNKSDH 571
+C +C KYGH + C+ H + +Q + +K + H
Sbjct: 504 RCHYCGKYGHIKPFCY----------------HLHGHPHHGTQGSSSGRKMMWV---PKH 544
Query: 572 KRQNVTFRKDLLEELTFKDPTLHGLDSGCSRHMTGDRDCFLTFEKKDGGLVTFGNNDKGK 631
K ++ L + K+ LDSGCSRHMTG ++ + E VTFG+ KGK
Sbjct: 545 KIVSLVVHTSL--RASAKEDWY--LDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGK 600
Query: 632 IRGKGTIGNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQTSSNKLFF 691
I G G + + + V V+GL NL+SISQLCD GF V F + C V S L
Sbjct: 601 ITGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSECLVTNEKSEVLMK 660
Query: 692 SGSRRKNLYVLELNDMPAES-CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKI 750
+ N Y+ + S C S E + IWH+R GH+ ++ + K+ VRG+P +
Sbjct: 661 GSRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNL 720
Query: 751 SFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYGFVIVD 810
E+ RIC C GKQVK S + ++ +T + LELLH+DL GP+Q SL GKRY +V+VD
Sbjct: 721 KIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVD 780
Query: 811 DFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 865
DFSRFTWV F++ K ++FE F+ R+Q EK I +RSDHG EFEN+ F F
Sbjct: 781 DFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEF 835
>ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30017518|gb|AAP12940.1| transposon protein, putative,
CACTA, En/Spm sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1975
Score = 675 bits (1742), Expect = 0.0
Identities = 348/677 (51%), Positives = 463/677 (67%), Gaps = 35/677 (5%)
Query: 879 NNKEK---LGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPKE 935
N +EK L KF+ + D+ LGY + SK YRVYN VE + + FDE + + E
Sbjct: 1298 NEQEKGVRLTKFESRCDEGFLLGYVSNSKAYRVYNKNKGIVEETADVQFDETNGSQEGHE 1357
Query: 936 NEDTE-----VPTLQNVPVQNTENTVEKEDDQNA-------------------QDQSFQS 971
N D + ++N+ +++ + +E ED + +++ Q
Sbjct: 1358 NLDDVGDEGLMRAMKNMSIRDVK-PIEVEDKPSTSTQDEPSTFATPSQAQVEVEEEKAQD 1416
Query: 972 PPRSWR----MVGDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDS 1025
PP R + DHP DQ++G + V+TR + + +S +EPK ++EA+ D
Sbjct: 1417 PPMPQRIHTALSKDHPIDQVLGDISKDVQTRSRVASICEHYSFVSCLEPKHVDEALCDLD 1476
Query: 1026 WIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQ 1085
W+ AM EEL+ F RNKVW LV +D +IGT+WVFRNK DE+G VVR+KARLVAQ + Q
Sbjct: 1477 WMNAMHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDEKGLVVRSKARLVAQDFTQ 1536
Query: 1086 QEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFI 1145
EG+D+ ETFAPVARLEAIRILLA+A+ IKLFQMDVKSAFLNG + E V+V QPPGF
Sbjct: 1537 VEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFE 1596
Query: 1146 NKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQ 1205
+ + PNHV+KL+KALYGLK APRAWY+RL FL+ F GK+DTTL K + D ++ Q
Sbjct: 1597 DPKNPNHVYKLSKALYGLKPAPRAWYERLRDFLLPKDFKIGKVDTTLSTKIIDDDFVVCQ 1656
Query: 1206 VYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKD 1265
+YVDDIIFG+T C+EF ++M EFEMSM+GEL FFLGLQIKQ +G F+SQ KY+KD
Sbjct: 1657 IYVDDIIFGSTNEVFCKEFGDMMSREFEMSMVGELSFFLGLQIKQLKDGTFVSQTKYIKD 1716
Query: 1266 ILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGL 1325
+LK++ + +AK + TPM + LD DE GK + K Y MIGSLLYLTASRPDI+F+V +
Sbjct: 1717 LLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYHSMIGSLLYLTASRPDIMFSVCM 1776
Query: 1326 CARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTS 1385
CARFQ K+ HL AVKRI RYL ++ +GLWY KG+ F +V+Y D DYA KV+RKSTS
Sbjct: 1777 CARFQAAPKKCHLVAVKRILRYLKHSSTIGLWYPKGAKFKIVSYSDLDYAVCKVDRKSTS 1836
Query: 1386 GSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIY 1445
GSCQ LG++L+ WS +KQN++ALST EAEYVSA SCC+Q+LW++ L DY + +T P+
Sbjct: 1837 GSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPLL 1896
Query: 1446 CDNTSAINLSKNPIQHSRSKHIEIKHHFIRDH-VQKKNIALSFVDTENQLADIFTKPLVE 1504
CDN SAI ++ NP+QHSR+KHI+I++HF++DH V K +I +S + TENQLADIFTKPL E
Sbjct: 1897 CDNDSAIKIANNPVQHSRTKHIDIRYHFLKDHVVAKSDIVISHIRTENQLADIFTKPLDE 1956
Query: 1505 DRFNFLKEKLLIMKNPN 1521
RF L+ +L ++ N
Sbjct: 1957 TRFCKLRNELNVIDFSN 1973
Score = 67.4 bits (163), Expect = 4e-09
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 3 KVKYIAEGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITNGDFVPTNKEGAVKA 62
+VK + E + P+F+G+NY WK KM L++ +W+++ G A+
Sbjct: 759 RVKMLNEVNHVGKAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGF--------AITG 810
Query: 63 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKET 122
D + + LN++A L L+ EE +RV A W+ L HEGTS +
Sbjct: 811 THLTGIDHR-NLQLNAQAMNALFNCLSQEECDRVSNLETAYENWNKLAEIHEGTSEYNDA 869
Query: 123 RIDIGVRKFEVFEMSENETIDEMYAR 148
++ ++E F M +E+++ MY R
Sbjct: 870 KLHFLKIQYETFSMLPHESVNAMYGR 895
Score = 38.5 bits (88), Expect = 1.8
Identities = 84/404 (20%), Positives = 154/404 (37%), Gaps = 78/404 (19%)
Query: 270 LRRNQIRKKFP-KTNISIKTEA-DKSQVTCYGCNKTGHFKNECPD--------------- 312
L++ ++ + P K I+ + E DK + C+ C + HF ++CP
Sbjct: 911 LKKKEMEETSPSKKCIAPQAEVEDKGKGKCFECGEKRHFASKCPSKDDDGDKSSMKKSGG 970
Query: 313 ---IKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLMAQSDDEEEVIIYKTDSLYKD 369
+KK++++ + + W EES + ++ + G A S ++ ++ K+
Sbjct: 971 YKLMKKLKKEGKKIEVFIGDWVTNEESSASSGSEEEGGDDASSKKKKMAVV-----AIKE 1025
Query: 370 LENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDESRKTIKILQDSHFDMSEK 429
+ L L + S + LS+ + + + YDE + + ++ H ++
Sbjct: 1026 APSPFAPLC-----LMAKGSSKVTSLSDSESDDDCDYASYDE---LVSMFEELHAYSEKE 1077
Query: 430 QREINRKQKGIMSVPSEVQKENILLKKEVETLKKDLTGFIKSTETFQNIVGS-QNKSTKK 488
+ +K S+ EV E + E T+ + K E N++ + Q+ +
Sbjct: 1078 IVKFKALKKDHASL--EVLYEELKTSHERLTISHE-----KLKEAHDNLLSTYQHGALID 1130
Query: 489 SGLG---FKDPSKIIGSFVPKAKIRVKC-----------------CFCDKYGHNESVCHV 528
G+ D + + V + I C C +NE V
Sbjct: 1131 VGISCVLLDDSATCHIAHVASSSISTSCDDLVDMPSSSSSPCVSICDASLVENNELKEQV 1190
Query: 529 KKK-------FIKQNNLN--LSSERSHLNRSESSQKAEKAKKTCFYCN---KSDHKRQNV 576
K F +N L+ LS +R LN+ +K KK KS+ + V
Sbjct: 1191 AKLNKSLERCFKGKNTLDKILSEQRCILNKEGLGFIPKKGKKPSHRATRFVKSNGRLMMV 1250
Query: 577 TFRKD----LLEELTFKDPTLHG-LDSGCSRHMTGDRDCFLTFE 615
D L + ++ H LDSGC++HMTGDR F TF+
Sbjct: 1251 ALLLDMWVLLYSVVNYRTGGSHWVLDSGCTQHMTGDRAMFTTFD 1294
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,506,220,489
Number of Sequences: 2540612
Number of extensions: 107789635
Number of successful extensions: 427924
Number of sequences better than 10.0: 4349
Number of HSP's better than 10.0 without gapping: 1896
Number of HSP's successfully gapped in prelim test: 2591
Number of HSP's that attempted gapping in prelim test: 406836
Number of HSP's gapped (non-prelim): 16092
length of query: 1523
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1382
effective length of database: 505,134,102
effective search space: 698095328964
effective search space used: 698095328964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Medicago: description of AC144724.6