BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144722.10 + phase: 0 /pseudo
(1595 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 107 3e-21
gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cult... 106 6e-21
gb|AAP51738.1| putative copia-type pol polyprotein [Oryza sativa... 106 7e-21
gb|AAL73557.1| Putative gag-pol polyprotein [Oryza sativa] 106 7e-21
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 105 1e-20
gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japon... 105 2e-20
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 104 2e-20
emb|CAE02142.1| OSJNBa0069D17.3 [Oryza sativa (japonica cultivar... 104 2e-20
ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sati... 104 3e-20
gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza s... 103 6e-20
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 103 6e-20
gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cul... 103 6e-20
emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar... 103 6e-20
gb|AAK92658.1| Putative retroelement [Oryza sativa] 103 6e-20
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 103 6e-20
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 102 1e-19
ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sati... 102 1e-19
gb|AAV44188.1| putative polyprotein [Oryza sativa (japonica cult... 102 1e-19
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 102 1e-19
gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678... 101 2e-19
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 107 bits (267), Expect = 3e-21
Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 54/362 (14%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT +
Sbjct: 116 QYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTMLIN 175
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
+ D++ ++ L+ + ++M ++ KK A PSK I+ ++ E + +S
Sbjct: 176 S-DMSRMTPASLLGKINTNDM----YKLKKKEIEEASPSKKCIALQAEV----EDQSKSK 226
Query: 123 DGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKN-------SKNEDQKGCFNCKKP 175
+ +ED +M +L+ + L ++K+ RGS N +K CF C +
Sbjct: 227 VNEVNEDLEEEMVLLARRFNDLLGRRKE--RGRGSNSNRRKNRRPNKTLSNLRCFECGEK 284
Query: 176 GHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATW---EDLDSESGSD 226
GHF + CP + K KKS K K++KK + + W E+ + SGS+
Sbjct: 285 GHFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSE 342
Query: 227 KEEADDDAK-----------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQ 269
+E DD + A + L+A SS+ S ++S+S+D+ + +
Sbjct: 343 EEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYD 399
Query: 270 ELVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLIS 324
ELV +EL + E + LK+ + L ++ K+T L S E+LK NL+S
Sbjct: 400 ELVSMFEELHTYSEKEIVKFKALKKDHASLEVLYEELKTTHERLTISHEKLKEAHDNLLS 459
Query: 325 TT 326
TT
Sbjct: 460 TT 461
>gb|AAT85130.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1362
Score = 106 bits (265), Expect = 6e-21
Identities = 104/381 (27%), Positives = 171/381 (44%), Gaps = 47/381 (12%)
Query: 7 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSK-ILRSLPSRWRPKVTAIEEAKD 65
F M D E+ +EMY R LV+ ++ L + + V K +LR+ R V+ I E KD
Sbjct: 163 FVMGDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLVSMIRERKD 222
Query: 66 LNTLSVEDLVSSLKVHEMSLNE-HETSKKSKSIALPSKGKISKSSKAYKASESEEESPDG 124
L+ D++ + HEM E E + K+ A+ I A KA + EE S +
Sbjct: 223 FKRLTPSDILGRIVSHEMQEEEAREVRQMVKNAAM-----IKNQEIALKAKQEEESSCEE 277
Query: 125 DSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKNEDQ------KGCFNCKKPGHF 178
DE+ + ++ ++ K FL K G K K++D+ + CFNC + GHF
Sbjct: 278 SEDEEMA-----------FIVKRFKHFLRKSGYGKGRKDDDKGKRQSKRACFNCGEYGHF 326
Query: 179 IADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMA-TWEDLDSESGSDK-EEADDDAKA 236
IADCP + K KG KK R + ++ MA W D E K + D
Sbjct: 327 IADCPKSNEAKAKGGKKKPE------RAHVAEAHMAEVWYSRDEEDPEVKPKPKPKDKVE 380
Query: 237 AVGLVATVSSEAVSEAE-------SDSEDENEVYS-------KIPRQELVDSLKELLSLF 282
G VATV+ ++ S ++ SD +D++ YS K+ Q+ + ++ S
Sbjct: 381 GEGGVATVAFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLDVDSSD 440
Query: 283 EHRTNELTDLKEKYVDLMKQQKSTLLE-LKASEEELKGFNLISTTYEDRLKSLCQKLQEK 341
E NEL D+ + + Q + L+ L + E+ L+ + + R +L + L ++
Sbjct: 441 EESDNELDDVLKSFSKPAMQHLAKLMRALYSKEQSLERQEELLILEKKRNLALEESLAKE 500
Query: 342 CDKGSGNKHEIALDDFIMAGI 362
C K +E+ L + +A +
Sbjct: 501 CAKNEQLANELNLANGSLASL 521
>gb|AAP51738.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530298|ref|NP_919451.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|19920210|gb|AAM08642.1| Putative
copia-type pol polyprotein [Oryza sativa]
Length = 1866
Score = 106 bits (264), Expect = 7e-21
Identities = 104/347 (29%), Positives = 153/347 (43%), Gaps = 46/347 (13%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQIL-KKSYVASDHVSKILRSLPSRWRPKVTAIE 61
Q+E F M D ES +MY R +V+ ++ L K V K++R++ R VT I
Sbjct: 7 QFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNFTLVTIIR 66
Query: 62 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEES 121
E D TL+ DL+ + H+M + E + + I S I K A KA E EEE+
Sbjct: 67 ERPDYKTLTPHDLLGRILAHDMLVQE--SKDVIQYINQSSTASIKKEDLALKAKEEEEEN 124
Query: 122 PDGDSD-EDQSVKMAMLSNKLEYLARKQKKFL---SKRGSYKNSKNEDQKGCFNCKKPGH 177
S E +MA+ K R+ F SK S K+S + C+ CK+PGH
Sbjct: 125 RKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYSNKSSGRHSARVCYVCKEPGH 184
Query: 178 FIADCPDLQ-----KEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKE---- 228
FIADCP L+ KE K KK SK + L + S SD+E
Sbjct: 185 FIADCPHLKDGSHIKEDKKKDEKKEKHKHSKSEHYGQAHLGMIFGSDSKSSSSDEEGVAT 244
Query: 229 --------------EADDDAKAAVGLVATVSSEAVSEAESDSEDE---NEVYSKIPRQEL 271
+D++AK L + + + VS+ E + EDE +E++ I ++ L
Sbjct: 245 FAVKPSSPPRLFNYSSDENAKVPSPL-KSFNVDLVSDEEDEVEDEVMDDELFKSITKESL 303
Query: 272 VDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASEEELK 318
L ELL E ++YV L ++Q++ L+ K ELK
Sbjct: 304 -PHLSELLGRIE----------DQYVTL-ERQETLLIHEKERSHELK 338
>gb|AAL73557.1| Putative gag-pol polyprotein [Oryza sativa]
Length = 491
Score = 106 bits (264), Expect = 7e-21
Identities = 104/347 (29%), Positives = 153/347 (43%), Gaps = 46/347 (13%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQIL-KKSYVASDHVSKILRSLPSRWRPKVTAIE 61
Q+E F M D ES +MY R +V+ ++ L K V K++R++ R VT I
Sbjct: 73 QFERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNFTLVTIIR 132
Query: 62 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEES 121
E D TL+ DL+ + H+M + E + + I S I K A KA E EEE+
Sbjct: 133 ERPDYKTLTPHDLLGRILAHDMLVQE--SKDVIQYINQSSTASIKKEDLALKAKEEEEEN 190
Query: 122 PDGDSD-EDQSVKMAMLSNKLEYLARKQKKFL---SKRGSYKNSKNEDQKGCFNCKKPGH 177
S E +MA+ K R+ F SK S K+S + C+ CK+PGH
Sbjct: 191 RKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYSNKSSGRHSARVCYVCKEPGH 250
Query: 178 FIADCPDLQ-----KEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKE---- 228
FIADCP L+ KE K KK SK + L + S SD+E
Sbjct: 251 FIADCPHLKDGSHIKEDKKKDEKKEKHKHSKSEHYGQAHLGMIFGSDSKSSSSDEEGVAT 310
Query: 229 --------------EADDDAKAAVGLVATVSSEAVSEAESDSEDE---NEVYSKIPRQEL 271
+D++AK L + + + VS+ E + EDE +E++ I ++ L
Sbjct: 311 FAVKPSSPPRLFNYSSDENAKVPSPL-KSFNVDLVSDEEDEVEDEVMDDELFKSITKESL 369
Query: 272 VDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASEEELK 318
L ELL E ++YV L ++Q++ L+ K ELK
Sbjct: 370 -PHLSELLGRIE----------DQYVTL-ERQETLLIHEKERSHELK 404
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 105 bits (262), Expect = 1e-20
Identities = 94/365 (25%), Positives = 172/365 (46%), Gaps = 52/365 (14%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT +
Sbjct: 116 QYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTMLIN 175
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
+ D++ ++ L+ + ++M ++ KK A PSK I+ +E E++
Sbjct: 176 S-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSKKCIALQ------AEVEDKGK 224
Query: 123 DGDSDEDQSVKMAMLSNKL-EYLARKQKKFLSKRGSYKNSKNEDQK----GCFNCKKPGH 177
D +++ ++A+L+ + ++L R++++ + + +K ++ CF C + GH
Sbjct: 225 VNDVNKNLEEEIALLARRFNDFLGRRKERGKGSNSNRRRNKRPNKTLSNLRCFECGEKGH 284
Query: 178 FIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATW---EDLDSESGSDKE 228
F + CP + K KKS K K++KK + + W E+ + SGS +E
Sbjct: 285 FASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEE 342
Query: 229 EADDDAK-----------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQEL 271
+ DD + A + L+A SS+ S ++S+S+D+ + I EL
Sbjct: 343 DGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DISYDEL 399
Query: 272 VDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLISTT 326
V +EL + E + LK+ + L ++ K++ L S E+LK NL+STT
Sbjct: 400 VSMFEELHAYSEKEIVKFKALKKDHASLEVLYEELKTSHERLTISHEKLKEAHDNLLSTT 459
Query: 327 YEDRL 331
L
Sbjct: 460 QHGAL 464
>gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530636|ref|NP_919620.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042890|gb|AAM08718.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 1627
Score = 105 bits (261), Expect = 2e-20
Identities = 108/431 (25%), Positives = 194/431 (44%), Gaps = 66/431 (15%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT +
Sbjct: 116 QYETFSMLPHESVNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRALPKKYETLVTMLIN 175
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
+ D++ ++ L+ + ++M ++ KK A PSK I+ ++ E + +S
Sbjct: 176 S-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSKKCIALQAEV----EDKGKSK 226
Query: 123 DGDSDEDQSVKMAMLSNKLEYLARKQKKFL-----SKRGSYKNSKNEDQKGCFNCKKPGH 177
++++D ++A+L+ + L ++K+ + ++R + + +K CF C + GH
Sbjct: 227 VNEANDDLKEEIALLARRFNDLLGRRKERVRGSNSNRRRNRRPNKTLSNLRCFECGEKGH 286
Query: 178 FIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATW---EDLDSESGSDKE 228
F + CP + K KKS K K++KK + + W E+ + SGS++E
Sbjct: 287 FASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEE 344
Query: 229 EADDDAK-----------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQEL 271
DD + A + L+A SS+ S ++S+S+D+ +
Sbjct: 345 GGDDASSKKKKMAVVVIKEAPTLFAPLCLMAKGSSKVTSLSDSESDDDCDDV-------- 396
Query: 272 VDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRL 331
S EL+S+FE EL EK + K K L+ EELK + T +L
Sbjct: 397 --SYDELVSMFE----ELHAYSEKEIVKFKALKMDHASLEVLYEELKTSHERLTISHKKL 450
Query: 332 KSLCQKLQEKCD-----KGSGNKHEIA-LDDFIMAGIDRSKVASMIYSTYK---NKGKGI 382
S CD + + K ++A L+ + + I S + NK +G+
Sbjct: 451 NSSSSSCVSICDASLVVENNELKEQVAKLNKSLERCFNGKNTLDKILSEQRCILNK-EGL 509
Query: 383 GYSEEKSKEYS 393
G+ +KSK+ S
Sbjct: 510 GFIPKKSKKPS 520
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 104 bits (260), Expect = 2e-20
Identities = 101/369 (27%), Positives = 162/369 (43%), Gaps = 73/369 (19%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
++E +MK++E I + + + + L + V KILRSLP R+ KVTAIEE
Sbjct: 133 KFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEE 192
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
A+D+ + V++L+ SL+ E+ L++ KKSK++A S E EE+
Sbjct: 193 AQDICNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEY 239
Query: 123 DGDSDEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGSYKNSKNEDQK------ 167
D D+DE + + +L + L + ++QK + R K K D K
Sbjct: 240 DLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKG 299
Query: 168 -GCFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSD 226
C C+ GH IA+CP K+ KG S S D +SE SD
Sbjct: 300 IQCHGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD 340
Query: 227 KEEADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRT 286
+D D A +G+ T +ED ++ S+I EL S ++L E
Sbjct: 341 ---SDRDVNALIGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKIL 385
Query: 287 NELTDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKG 345
+ LK+ DL ++++ E+ ELKG +++ E+ KS+ + +KG
Sbjct: 386 QQEAQLKKVIADLEAEKEAHKEEI----SELKGEVGFLNSKLENMTKSI-----KMLNKG 436
Query: 346 SGNKHEIAL 354
S E+ L
Sbjct: 437 SDTLDEVLL 445
>emb|CAE02142.1| OSJNBa0069D17.3 [Oryza sativa (japonica cultivar-group)]
gi|50923625|ref|XP_472173.1| OSJNBa0069D17.3 [Oryza
sativa (japonica cultivar-group)]
Length = 1156
Score = 104 bits (260), Expect = 2e-20
Identities = 104/381 (27%), Positives = 169/381 (44%), Gaps = 47/381 (12%)
Query: 7 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSK-ILRSLPSRWRPKVTAIEEAKD 65
F M D E+ +EMY R LV+ ++ L + + V K +LR+ R V+ I E KD
Sbjct: 71 FVMDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLVSMIRERKD 130
Query: 66 LNTLSVEDLVSSLKVHEMSLNE-HETSKKSKSIALPSKGKISKSSKAYKASESEEESPDG 124
L+ D++ S+ HEM E E + K+ + I A KA++ EE S +
Sbjct: 131 FKRLTPNDILGSIVSHEMQEEEAREVRQMVKNAPM-----IKNQEVALKANQEEESSCEE 185
Query: 125 DSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKNEDQ------KGCFNCKKPGHF 178
DE+ L ++ ++ K FL K G K K++D+ + CFNC + GHF
Sbjct: 186 SEDEE-----------LAFIVKRFKHFLRKSGYGKGRKDDDKGKRQSKRACFNCGEYGHF 234
Query: 179 IADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMA-TWEDLDSESGSDK-EEADDDAKA 236
IADCP + K KG KK R + ++ MA W D E K + D
Sbjct: 235 IADCPRSNEAKAKGGKKKPK------RAHVAEAHMAEVWYSGDEEYPEVKPKPKSKDKVE 288
Query: 237 AVGLVATVSSEAVSEAE-------SDSEDENEVYS-------KIPRQELVDSLKELLSLF 282
G VAT++ ++ S ++ SD +D++ YS K+ Q+ + ++ S
Sbjct: 289 GEGGVATIAFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLDVDSSD 348
Query: 283 EHRTNELTD-LKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEK 341
E NEL D LK M+ + L + E+ L+ + + R L + L ++
Sbjct: 349 EESDNELDDVLKSLSKPTMQHLAKLMRALDSKEQSLERQEELLILEKKRNLDLEESLAKE 408
Query: 342 CDKGSGNKHEIALDDFIMAGI 362
C K +++ L + +A +
Sbjct: 409 CAKNEQLANDLNLANGSLASL 429
>ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|29126367|gb|AAO66559.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 104 bits (259), Expect = 3e-20
Identities = 100/347 (28%), Positives = 154/347 (43%), Gaps = 38/347 (10%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQIL-KKSYVASDHVSKILRSLPSRWRPKVTAIE 61
Q+E F M D ES +MY R +V+ ++ L K V K++R++ R VT I
Sbjct: 142 QFERFIMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIR 201
Query: 62 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEES 121
E D TL+ DL+ + H+M + E + + I S I K A KA E EEE+
Sbjct: 202 ERPDYKTLTPHDLLGRILAHDMLVQE--SKDVIQYINQSSTTNIKKEDLALKAKEEEEEN 259
Query: 122 PDGDSD-EDQSVKMAMLSNKLEYLARKQKKFL---SKRGSYKNSKNEDQKGCFNCKKPGH 177
S E +MA+ K R+ F SK S K+S + C+ CK+PGH
Sbjct: 260 RKSKSKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYSNKSSGRHSARMCYVCKEPGH 319
Query: 178 FIADCPDL------QKEKFKGKSKKSSFNSSKFRK--QIKKSLMATWEDLDSESGSDKEE 229
FIADCP L +++K KG+ K K+ K ++ + DSES S EE
Sbjct: 320 FIADCPHLKDGSHIKEDKKKGEKKDEKKEKHKYSKWEHYGQAHLGMIFGSDSESSSSDEE 379
Query: 230 A-----------------DDDAKAAVGLVA---TVSSEAVS-EAESDSEDENEVYSKIPR 268
D A + L+A V S S + S++E+EV ++
Sbjct: 380 GVATFAVKPSSPPRLFDYSSDEDAPICLMAKEPKVPSPLKSFNVDFVSDEEDEVEDEVMD 439
Query: 269 QELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASEE 315
EL+ S+ + H + L ++++Y L +Q++ + E + S E
Sbjct: 440 DELLKSITK--ESIPHLSELLGRIEDQYATLERQEELLIHEKEQSHE 484
>gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 103 bits (256), Expect = 6e-20
Identities = 103/351 (29%), Positives = 157/351 (44%), Gaps = 40/351 (11%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQIL-KKSYVASDHVSKILRSLPSRWRPKVTAIE 61
Q+E F M D ES +MY +V+ ++ L K V K++R++ R VT I
Sbjct: 142 QFERFVMLDGESPSDMYDHLSKIVNEIKGLGSKDMTDEVVVKKMVRAITLRNSTLVTIIR 201
Query: 62 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEES 121
E D TL+ DL+ + H+M + E + + + I S I K A KA E EEES
Sbjct: 202 ERPDYKTLTPHDLLGRILAHDMLVQE--SKEVIQYINQSSTTSIKKEDLALKAKEEEEES 259
Query: 122 PDGDSDED-QSVKMAMLSNKLEYLARKQKKFL---SKRGSYKNSKNEDQKGCFNCKKPGH 177
S E+ +M + K R+ F SK S K S + C+ CK+PGH
Sbjct: 260 RKSKSKEEIDDEEMTLFVKKFGKFMRRSGFFKGSSSKHHSNKLSGRHSARVCYVCKEPGH 319
Query: 178 FIADCPDLQ-----KEKFKG--KSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEA 230
FIADCP L+ KE G K +K + R++ ++ + DSES S EE
Sbjct: 320 FIADCPYLKDGSHIKEDKMGEKKDEKKEKHKHSKRERYGQAHLGKIFGSDSESSSSDEEG 379
Query: 231 -----------------DDDAKAAVGLVA----TVSSEAVSEAESDSEDENEVYSKIPRQ 269
D A + L+A SS + S++E++V ++ +
Sbjct: 380 IATFAVKPSSPPRLFNYSSDEDAPICLMAKEPKVPSSLKSFNVDLVSDEEDDVEDEVMDE 439
Query: 270 ELVDSL-KELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASEEELKG 319
EL S+ KE L H + L ++++Y L ++Q++ L+ K ELKG
Sbjct: 440 ELFKSITKESL---PHLSELLGRIEDQYATL-ERQEALLIREKERSHELKG 486
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 103 bits (256), Expect = 6e-20
Identities = 96/362 (26%), Positives = 167/362 (45%), Gaps = 54/362 (14%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT +
Sbjct: 116 QYETFYMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLIN 175
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
+ D++ ++ L+ + ++M ++ KK A PSK I+ ++ E + +S
Sbjct: 176 S-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSKKCIALQAEV----EDKSKSK 226
Query: 123 DGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKN-------SKNEDQKGCFNCKKP 175
+ +ED +M +L+ + L ++K+ RGS N +K CF +
Sbjct: 227 VNEVNEDLEEEMILLARRFNDLLERRKE--RGRGSNSNRRRNRRLNKTLSNLRCFEYGEK 284
Query: 176 GHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATW---EDLDSESGSD 226
GHF + CP + K KKS K K++KK + + W E+ + SGS+
Sbjct: 285 GHFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSE 342
Query: 227 KEEADDDAK-----------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQ 269
+E DD + A + L+A SS+ S ++S+S+D+ + + +
Sbjct: 343 EEGGDDASSKKKKMVVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYE 399
Query: 270 ELVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLIS 324
ELV +EL + E + L + Y L ++ K++ L S E+LK NL+S
Sbjct: 400 ELVSMFEELHAYSEKEIVKFKALNKDYASLDVLYEELKTSNERLTISHEKLKEAHDNLLS 459
Query: 325 TT 326
TT
Sbjct: 460 TT 461
>gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533180|ref|NP_920892.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22748369|gb|AAN05371.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 103 bits (256), Expect = 6e-20
Identities = 92/360 (25%), Positives = 171/360 (46%), Gaps = 50/360 (13%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT +
Sbjct: 82 QYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALPEKYETLVTMLIN 141
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
+ D++ ++ L+ + ++M ++ KK A PSK I+ ++ E + +
Sbjct: 142 S-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSKKCIALQTEV----EDKGKGK 192
Query: 123 DGDSDEDQSVKMAMLSNKL-EYLARKQKK----FLSKRGSYKNSKNEDQKGCFNCKKPGH 177
+++ED ++A+L+ + + L RK+++ ++R + + +K CF C + GH
Sbjct: 193 VNEANEDLEEEIALLARRFNDLLGRKKERGRGSNSNRRRNRRPNKTLSNLRCFECGEKGH 252
Query: 178 FIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATWE---DLDSESGSDKE 228
F + CP + K KKS K K++KK + + W+ + + SGS++E
Sbjct: 253 FASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNKESSASSGSEEE 310
Query: 229 EADDDAK-----------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQEL 271
DD + A + L+A SS+ S ++S+S+D+ + + E
Sbjct: 311 GGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDEF 367
Query: 272 VDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLISTT 326
V +EL + E + LK+ + L ++ K++ L S E+LK NL+STT
Sbjct: 368 VSMFEELHAYSEKEIVKFKALKKNHASLKVLYEELKTSHERLTISHEKLKETHDNLLSTT 427
>emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar-group)]
gi|50923981|ref|XP_472351.1| OSJNBb0014D23.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1475
Score = 103 bits (256), Expect = 6e-20
Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 54/362 (14%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+L ++ VT +
Sbjct: 116 QYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALSEKYETLVTMLIN 175
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
+ D++ ++ L+ + ++M ++ KK A PSK I+ ++ E + +S
Sbjct: 176 S-DMSRMTPASLLGKINTNDM----YKLKKKEMKEASPSKKCIALQAEV----EDKSKSK 226
Query: 123 DGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKN-------SKNEDQKGCFNCKKP 175
+ +ED +M +L+ K L ++K+ RGS N +K CF C +
Sbjct: 227 VNEVNEDLEEEMVLLARKFNDLLGRRKE--RGRGSNSNRRRNRRPNKTLSNLRCFECGEK 284
Query: 176 GHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATWEDLDSESGSD--K 227
GHF + CP + K KKS K K++KK + + W+ + S S +
Sbjct: 285 GHFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGFE 342
Query: 228 EEADDDAK------------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQ 269
E+ DDA A + L+A SS+ S ++S+S+D+ + +
Sbjct: 343 EQCSDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYD 399
Query: 270 ELVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLIS 324
ELV +EL + E + LK+ + L ++ K++ L S E+LK NL+S
Sbjct: 400 ELVSMFEELHAYSEKEIVKFKALKKDHASLEVLYEELKTSHERLTISHEKLKEAHDNLLS 459
Query: 325 TT 326
TT
Sbjct: 460 TT 461
>gb|AAK92658.1| Putative retroelement [Oryza sativa]
Length = 1131
Score = 103 bits (256), Expect = 6e-20
Identities = 92/360 (25%), Positives = 171/360 (46%), Gaps = 50/360 (13%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT +
Sbjct: 136 QYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALPEKYETLVTMLIN 195
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
+ D++ ++ L+ + ++M ++ KK A PSK I+ ++ E + +
Sbjct: 196 S-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSKKCIALQTEV----EDKGKGK 246
Query: 123 DGDSDEDQSVKMAMLSNKL-EYLARKQKK----FLSKRGSYKNSKNEDQKGCFNCKKPGH 177
+++ED ++A+L+ + + L RK+++ ++R + + +K CF C + GH
Sbjct: 247 VNEANEDLEEEIALLARRFNDLLGRKKERGRGSNSNRRRNRRPNKTLSNLRCFECGEKGH 306
Query: 178 FIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATWE---DLDSESGSDKE 228
F + CP + K KKS K K++KK + + W+ + + SGS++E
Sbjct: 307 FASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNKESSASSGSEEE 364
Query: 229 EADDDAK-----------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQEL 271
DD + A + L+A SS+ S ++S+S+D+ + + E
Sbjct: 365 GGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYDEF 421
Query: 272 VDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLISTT 326
V +EL + E + LK+ + L ++ K++ L S E+LK NL+STT
Sbjct: 422 VSMFEELHAYSEKEIVKFKALKKNHASLKVLYEELKTSHERLTISHEKLKETHDNLLSTT 481
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 103 bits (256), Expect = 6e-20
Identities = 97/362 (26%), Positives = 166/362 (45%), Gaps = 54/362 (14%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
QYE F M ES+ +MY R +V+ L+ L +Y + K+LR+LP ++ VT +
Sbjct: 104 QYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLIN 163
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
+ D++ ++ L+ + ++M ++ KK A SK I+ ++ E + +S
Sbjct: 164 S-DMSRMTPASLLGKINTNDM----YKLKKKEMEEASSSKKCIALQAEV----EDKSKSK 214
Query: 123 DGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKN-------SKNEDQKGCFNCKKP 175
+ +ED +M +L+ K L ++K+ RGS N +K CF C +
Sbjct: 215 VNEVNEDLEEEMVLLARKFNDLLGRRKE--RGRGSNSNRRRNRRPNKTFSNLRCFECCEK 272
Query: 176 GHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKK------SLMATW---EDLDSESGSD 226
GHF + CP + K KKS K K++KK + + W E+ + SGS+
Sbjct: 273 GHFASKCPSKDDDGDKSSKKKS--GGYKLMKKLKKEGKKIEAFIGEWDSNEESSTSSGSE 330
Query: 227 KEEADDDAK-----------------AAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQ 269
+E DD + A + L+A SS+ S ++S+S+D+ + +
Sbjct: 331 EEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCD---DVSYD 387
Query: 270 ELVDSLKELLSLFEHRTNELTDLKEKYVD---LMKQQKSTLLELKASEEELKGF--NLIS 324
ELV +EL + E + LK+ + L ++ K + L S E+LK NL+S
Sbjct: 388 ELVSMFEELHAYSEKEIVKFKALKKDHASLEVLYEELKISHERLTISHEKLKEAHDNLLS 447
Query: 325 TT 326
TT
Sbjct: 448 TT 449
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 102 bits (254), Expect = 1e-19
Identities = 101/369 (27%), Positives = 165/369 (44%), Gaps = 73/369 (19%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
++E +MK++E I + + + + L + V KILRSLP R+ KVTAIEE
Sbjct: 133 KFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEE 192
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
A+D+ + V++L+ SL+ E+ L++ KKSK++A S E EE+
Sbjct: 193 AQDICNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEY 239
Query: 123 DGDSDEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNSKNE----DQKG 168
D ++DE + + +L + L + ++QK F ++GS K++ KG
Sbjct: 240 DLNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKG 299
Query: 169 --CFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSD 226
C C+ GH IA+CP K+ KG S S D +SE SD
Sbjct: 300 IQCHGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD 340
Query: 227 KEEADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRT 286
+D D A G+ T +ED ++ S+I EL S ++L E
Sbjct: 341 ---SDRDVNALTGIFET------------AEDSSDTDSEITFDELATSYRKLCIKSEKIL 385
Query: 287 NELTDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKG 345
+ LK+ DL ++++ E+ ELKG +++ E+ KS+ + +KG
Sbjct: 386 QQEAQLKKVIADLEAEKEAHKEEI----SELKGEVGFLNSKLENMTKSI-----KMLNKG 436
Query: 346 SGNKHEIAL 354
S E+ L
Sbjct: 437 SDTLDEVLL 445
>ref|XP_468615.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|30017555|gb|AAP12977.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1896
Score = 102 bits (254), Expect = 1e-19
Identities = 101/381 (26%), Positives = 165/381 (42%), Gaps = 47/381 (12%)
Query: 7 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSK-ILRSLPSRWRPKVTAIEEAKD 65
F M D E+ +EMY R LV+ ++ L + + V K +LR+ R V+ I E KD
Sbjct: 162 FVMDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLVSMIHERKD 221
Query: 66 LNTLSVEDLVSSLKVHEMSLNE-HETSKKSKSIALPSKGKISKSSKAYKASESEEESPDG 124
L+ D++ + HEM E E + K+ A+ I A KA + EE S +
Sbjct: 222 FKRLTPSDILGRIVSHEMQEEEAREVRQMVKNAAM-----IKNQEVALKAKQEEESSCEE 276
Query: 125 DSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKNEDQ------KGCFNCKKPGHF 178
DE+ ++ + ++ K FL + G K K++D+ + CFNC + GHF
Sbjct: 277 SKDEEMAL-----------IVKRFKHFLRRSGYGKERKDDDKGKRQSKRACFNCGEYGHF 325
Query: 179 IADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMA-TWEDLDSESGSDKEEADDDAKAA 237
IADCP + K KG KK + ++ MA W D E K + + +
Sbjct: 326 IADCPKTNEAKGKGGKKKPEC------AHVAEAHMAEVWYSEDEEDPKPKPKDKVEGEGG 379
Query: 238 VGLVATVSSEAVSEA--------ESDSEDENEVYS-------KIPRQELVDSLKELLSLF 282
V VA SS + E SD D++ YS K+ Q+L + S
Sbjct: 380 VATVAFKSSSSSKERLFMAQGHNLSDDNDDSYHYSCFMAQGRKVMTQKLSHTSLNDDSSD 439
Query: 283 EHRTNELTDLKEKYVDLMKQQKSTLLE-LKASEEELKGFNLISTTYEDRLKSLCQKLQEK 341
E NEL D+ + + Q + L+ L + E+ L+ + + R +L + L ++
Sbjct: 440 EESDNELDDVLKSFSKPAMQHLAKLMRALDSKEQSLERQEELLILEKKRNLALEESLAKE 499
Query: 342 CDKGSGNKHEIALDDFIMAGI 362
C K +++ L + +A +
Sbjct: 500 CAKNEQLANDLNLANGSLASL 520
>gb|AAV44188.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2049
Score = 102 bits (254), Expect = 1e-19
Identities = 95/335 (28%), Positives = 151/335 (44%), Gaps = 46/335 (13%)
Query: 7 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSK-ILRSLPSRWRPKVTAIEEAKD 65
F M D+E+ +EMY R LV+ ++ L + + V K +LR+ R V+ I+E KD
Sbjct: 144 FVMDDNETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRAFGPRNPTLVSMIQERKD 203
Query: 66 LNTLSVEDLVSSLKVHEMSLNE-HETSKKSKSIALPSKGKISKSSKAYKASESEEESPDG 124
L+ D++ + H+M E E + K+ A+ I A KA + EE S +
Sbjct: 204 FKRLTPSDILGRIVSHKMQEEEAREVRQMVKNAAM-----IKNQEVALKAKQEEESSGEE 258
Query: 125 DSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKNEDQ------KGCFNCKKPGHF 178
DE+ + ++ ++ K FL K G K K +D+ + CFNC + GHF
Sbjct: 259 SEDEEMA-----------FIVKRFKHFLRKSGYGKGRKVDDKGKRQSKRACFNCGEFGHF 307
Query: 179 IADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMA-TWEDLDSESGSDK-EEADDDAKA 236
IADCP + K KG KK R + ++ MA W D E K + D
Sbjct: 308 IADCPKSNEAKAKGGKKKLE------RAHVAEAHMAEVWYSGDEEDPEVKPKPKSKDKVE 361
Query: 237 AVGLVATVSSEAVSEAE-------SDSEDENEVYS-------KIPRQELVDSLKELLSLF 282
G VATV+ ++ S ++ SD +D++ YS K+ Q+ + ++ S
Sbjct: 362 GEGGVATVTFKSSSSSKERLFNNLSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLDVESSD 421
Query: 283 EHRTNELTDLKEKYVDLMKQQKSTLLELKASEEEL 317
E NEL D+ + + Q + L+ S E+L
Sbjct: 422 EESDNELDDVLKSFSKPAMQHLAKLMRALDSTEQL 456
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 102 bits (253), Expect = 1e-19
Identities = 101/369 (27%), Positives = 160/369 (42%), Gaps = 73/369 (19%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
++E +MK++E I + + + + L + V KILRSLP R+ KVTAIEE
Sbjct: 133 KFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEE 192
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
A+D+ + V++L+ SL+ E+ L++ KKSK++A S E EE+
Sbjct: 193 AQDICNMRVDELIGSLQTFELGLSD-RAEKKSKNLAFVSN------------DEGEEDEY 239
Query: 123 DGDSDEDQSVKMAMLSNK----LEYLARKQKKFLSK-----RGSYKNSKNEDQK------ 167
D D+DE + + +L + L + ++QK + R K K D K
Sbjct: 240 DLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKG 299
Query: 168 -GCFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSD 226
C C+ GH IA+CP K+ KG S S D +SE SD
Sbjct: 300 IQCHGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD 340
Query: 227 KEEADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRT 286
+D D A G+ T +ED ++ S+I EL S ++L E
Sbjct: 341 ---SDRDVNALTGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKIL 385
Query: 287 NELTDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKG 345
+ LK+ DL ++++ E+ ELKG +++ E KS+ + +KG
Sbjct: 386 QQEAQLKKVIADLEAEKEAHEEEI----SELKGEVGFLNSKLETMKKSI-----KMLNKG 436
Query: 346 SGNKHEIAL 354
S E+ L
Sbjct: 437 SDTLDEVLL 445
>gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
gag-proteinase polyprotein - soybean retrovirus-like
element
Length = 640
Score = 101 bits (252), Expect = 2e-19
Identities = 101/367 (27%), Positives = 166/367 (44%), Gaps = 72/367 (19%)
Query: 3 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEE 62
++E +MK++E I + + + + L + V KILRSLP R+ KVTAIEE
Sbjct: 133 KFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEE 192
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESP 122
A+D+ L V++L+ SL+ E+ L++ T KKSK++A S E EE+
Sbjct: 193 AQDICNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEY 239
Query: 123 DGDSDEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNSKNEDQ----KG 168
D D+DE + + +L + L + R+QK F ++GS +++++ KG
Sbjct: 240 DLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKG 299
Query: 169 --CFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSD 226
C C+ GH A+CP K++ KG S S +D +SE SD
Sbjct: 300 FQCHGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD 341
Query: 227 KEEADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRT 286
+D D A G +ED ++ S+I EL S +EL E
Sbjct: 342 ---SDRDVNALTGRF------------ESAEDSSDTDSEITFDELATSYRELCIKSEKIL 386
Query: 287 NELTDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKG 345
+ LK+ +L ++++ E+ ELKG +++ E+ KS+ + +KG
Sbjct: 387 QQEAQLKKVIANLEAEKEAHEEEI----SELKGEVGFLNSKLENMTKSI-----KMLNKG 437
Query: 346 SGNKHEI 352
S E+
Sbjct: 438 SDMLDEV 444
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.356 0.157 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,107,629,354
Number of Sequences: 2540612
Number of extensions: 77040221
Number of successful extensions: 704349
Number of sequences better than 10.0: 3047
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 3038
Number of HSP's that attempted gapping in prelim test: 684940
Number of HSP's gapped (non-prelim): 13933
length of query: 1595
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1453
effective length of database: 502,593,490
effective search space: 730268340970
effective search space used: 730268340970
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 82 (36.2 bits)
Medicago: description of AC144722.10