BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144721.10 + phase: 0 /pseudo
(813 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cult... 518 e-145
ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (jap... 513 e-143
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 506 e-141
gb|AAT93988.1| putative polyprotein [Oryza sativa (japonica cult... 506 e-141
gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (ja... 499 e-139
gb|AAP51877.1| putative gag-pol polyprotein [Oryza sativa (japon... 489 e-136
emb|CAE04646.2| OSJNBa0061G20.2 [Oryza sativa (japonica cultivar... 488 e-136
emb|CAE05956.3| OSJNBb0088C09.15 [Oryza sativa (japonica cultiva... 475 e-132
gb|AAX92854.1| retrotransposon protein, putative, unclassified [... 391 e-107
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 386 e-105
ref|XP_506588.1| PREDICTED P0597G07.109 gene product [Oryza sati... 385 e-105
emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|32692... 384 e-105
gb|AAP53968.1| putative gag-pol polyprotein [Oryza sativa (japon... 379 e-103
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana] 375 e-102
gb|AAD43604.1| T3P18.3 [Arabidopsis thaliana] gi|25301688|pir||H... 375 e-102
ref|XP_507316.1| PREDICTED P0623F08.22 gene product [Oryza sativ... 375 e-102
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa (japon... 374 e-102
ref|XP_470329.1| putative copia-like retrotransposon protein [Or... 374 e-102
gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis ... 374 e-102
ref|XP_476197.1| putative polyprotein [Oryza sativa (japonica cu... 374 e-102
>gb|AAV24907.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|51854440|gb|AAU10819.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1679
Score = 518 bits (1335), Expect = e-145
Identities = 252/372 (67%), Positives = 298/372 (79%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D PD VC L KSLYGLKQAPRAWY RF +FL +IGFV +K+D SLFI G+DT Y+L
Sbjct: 1307 DSAKPDMVCCLNKSLYGLKQAPRAWYSRFTTFLQSIGFVEAKSDTSLFILHRGNDTVYLL 1366
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDDI+LT SS +L I+AL+ EFS+ DLG L++FLGVS TR+S GL L Q +Y D
Sbjct: 1367 LYVDDIVLTASSRTLLHWTISALQGEFSMKDLGALHHFLGVSVTRNSAGLVLSQRQYCID 1426
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
I+ RA M +CKP TPVDT +KLS++ G D T +RSLAGALQYLTFTRPDISYAVQQ
Sbjct: 1427 ILERAGMADCKPCNTPVDTTAKLSSSDGPPVADPTDFRSLAGALQYLTFTRPDISYAVQQ 1486
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
+CL+MHDPR H AALKRI+ YI+G+ + GLH+ S+ +L+ YSDADW GCPDTRRSTS
Sbjct: 1487 VCLHMHDPREPHLAALKRILHYIRGSVDLGLHIQRSSACDLAVYSDADWAGCPDTRRSTS 1546
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
GY V+LGDNL+SWS+KRQ T+SRSSAEAEYR VAN VAE WLR LL ELH P S+AT+V
Sbjct: 1547 GYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANAVAEVTWLRQLLQELHSPPSRATLV 1606
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDNVSA+YLS NPV HQRTKH+E+D+HFVRE+VA+G V VLHVPT QYADIFTKGLP
Sbjct: 1607 YCDNVSAVYLSSNPVQHQRTKHVEIDLHFVRERVAVGAVRVLHVPTTSQYADIFTKGLPT 1666
Query: 798 PLFDEFRSSLSI 809
P+F EFRSSL++
Sbjct: 1667 PVFTEFRSSLNV 1678
>ref|XP_462785.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1373
Score = 513 bits (1320), Expect = e-143
Identities = 253/376 (67%), Positives = 299/376 (79%), Gaps = 1/376 (0%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D ++ D VC L KSLYGLKQAPRAW+ RFAS L ++GF+ +++D SLFI G+DT +L
Sbjct: 998 DPSHADLVCRLNKSLYGLKQAPRAWHHRFASHLISLGFIEAQSDSSLFIHRRGNDTVLLL 1057
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDDI+LT SS SL +IAAL+ EF++TD+GPL++FLG++ TR + GLFL Q +Y++D
Sbjct: 1058 LYVDDIVLTASSASLLQQVIAALQREFAMTDMGPLHHFLGITVTRFASGLFLSQRQYSQD 1117
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
I+ RA M CKP TPVD SKLSA G DST YRSLAGALQYLTFTRPDI++AVQQ
Sbjct: 1118 ILERAGMGECKPCSTPVDVHSKLSA-DGPPVADSTQYRSLAGALQYLTFTRPDIAFAVQQ 1176
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
+CLYMHDPR H AALKRI+RYIQGT GL + S T+L Y+DADW GCPDTRRSTS
Sbjct: 1177 VCLYMHDPREPHLAALKRILRYIQGTLSLGLTMRRSPPTDLVVYTDADWAGCPDTRRSTS 1236
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
GY V+LGDNL+SWS+KRQ T+SRSSAEAEYR VAN VAE+ WLR LL+ELH P ATVV
Sbjct: 1237 GYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANGVAEATWLRQLLMELHRPPRTATVV 1296
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDNVSA+YLS NPV HQRTKH+E+D+HFVREKVALG V VLHVPT QYAD+FTKGLP
Sbjct: 1297 YCDNVSAMYLSSNPVQHQRTKHVEIDLHFVREKVALGHVRVLHVPTTSQYADVFTKGLPT 1356
Query: 798 PLFDEFRSSLSIHPPP 813
LF EFR+SL+I P
Sbjct: 1357 SLFQEFRTSLTISDAP 1372
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 506 bits (1303), Expect = e-141
Identities = 240/376 (63%), Positives = 296/376 (77%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D PD VCLL+KSLYGLKQAPRAWYQRFA+++ +GF+ S +D SLF+ GD Y+L
Sbjct: 696 DPTAPDAVCLLQKSLYGLKQAPRAWYQRFATYIRQMGFMPSASDTSLFVYKDGDRIAYLL 755
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDDIILT S+ +L + A L SEF++TDLG L++FLG+S R GLFL Q +YA D
Sbjct: 756 LYVDDIILTASTTTLLQQLTARLHSEFAMTDLGDLHFFLGISVKRSPDGLFLSQRQYAVD 815
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
++ RA M C TPVDT +KLSAT G D + YRS+AGALQYLT TRPD++YAVQQ
Sbjct: 816 LLQRAGMAECHSTSTPVDTHAKLSATDGLPVADPSAYRSIAGALQYLTLTRPDLAYAVQQ 875
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
+CL+MHDPR H A +KRI+RY++G+ GLH+ + +L+AYSDADW GCP++RRSTS
Sbjct: 876 VCLFMHDPREPHLALVKRILRYVKGSLSIGLHIGSGPIQSLTAYSDADWAGCPNSRRSTS 935
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
GYCVYLGDNL+SWS+KRQ T+SRSSAEAEYR VA+ VAE CWLR LL ELH PI+ AT+V
Sbjct: 936 GYCVYLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAVAECCWLRQLLQELHVPIASATIV 995
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDNVSA+Y++ NPV+H+RTKHIE+DIHFVREKVALGQV VL+VP+ +Q+ADI TKGLP
Sbjct: 996 YCDNVSAVYMTANPVHHRRTKHIEIDIHFVREKVALGQVRVLYVPSSHQFADIMTKGLPV 1055
Query: 798 PLFDEFRSSLSIHPPP 813
LF +FRSSL + PP
Sbjct: 1056 QLFTDFRSSLCVRAPP 1071
>gb|AAT93988.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1480
Score = 506 bits (1303), Expect = e-141
Identities = 242/376 (64%), Positives = 296/376 (78%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D + P+ VCLL+KSLYGLKQAPRAWYQRFA+++ +GF +S ++ SLF+ GD+ Y+L
Sbjct: 1098 DPSAPNAVCLLQKSLYGLKQAPRAWYQRFATYIRQLGFTSSASNTSLFVYKDGDNIAYLL 1157
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDDIILT SS +L I A L SEF++TDLG L++FLG+S TR S GLFL Q +Y D
Sbjct: 1158 LYVDDIILTASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTRSSDGLFLSQRQYVVD 1217
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
++ RA M C TPVD +SKLSAT G D T YRSL GALQYLT TRP+++YAVQQ
Sbjct: 1218 LLKRAGMSECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQYLTLTRPELAYAVQQ 1277
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
+CL+MHDPR H A +KRI+RYI+GT GLHL + V +L+AYSDADW GCPD+ RSTS
Sbjct: 1278 VCLFMHDPREPHLALIKRILRYIKGTLHIGLHLGTTPVDSLTAYSDADWAGCPDSHRSTS 1337
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
GYCV+LGDNL+SWS+KRQ T+SRSSAEAEYR VA+ +AE CWLR LL ELH ++ ATVV
Sbjct: 1338 GYCVFLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQLLSELHISLTSATVV 1397
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDNVSA+Y++ NPV+H+RTKHIE+DIHFVREKVALGQV VLH+P+ +Q+ADI TKGLP
Sbjct: 1398 YCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHLPSSHQFADIMTKGLPV 1457
Query: 798 PLFDEFRSSLSIHPPP 813
LF EFRSSL + P
Sbjct: 1458 QLFTEFRSSLCVRDNP 1473
>gb|AAP51971.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530764|ref|NP_919684.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042923|gb|AAM08751.1| Putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1803
Score = 499 bits (1286), Expect = e-139
Identities = 234/374 (62%), Positives = 292/374 (77%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D P VCLL +SLYGL+QAPRAW++RFA +++GFV S+ D SLF+ G DT Y+L
Sbjct: 1027 DAARPADVCLLSRSLYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLL 1086
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDD+IL+ SS SL II L++EF + D+GPL YFLG+ R + G L QSKYA D
Sbjct: 1087 LYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYATD 1146
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
++ RA M NCK TP D K KLS+ G F DS+ YRS+AGALQYLT TRPDI+YAVQQ
Sbjct: 1147 VLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDIAYAVQQ 1206
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
+CL+MH PR +H LKRI+RYI+GT FGLHL ST L+A+SDADW GCPDTRRSTS
Sbjct: 1207 VCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTS 1266
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
G+C++LGD+LISWS+KRQ T+SRSSAEAEYRGVAN VAE WLR LL ELHC + +AT+
Sbjct: 1267 GFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIA 1326
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDN+S++Y+S NPV+H+RTKHIE+DIHFVREKVALG++ VL +P+ +Q+AD+FTKGLP
Sbjct: 1327 YCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADVFTKGLPS 1386
Query: 798 PLFDEFRSSLSIHP 811
+F+EFR+SL + P
Sbjct: 1387 SMFNEFRASLCVAP 1400
>gb|AAP51877.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530576|ref|NP_919590.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|17047028|gb|AAL34933.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 725
Score = 489 bits (1260), Expect = e-136
Identities = 229/372 (61%), Positives = 289/372 (77%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D P VCLL +SLYGL+QAPRAW++RFA ++++GFV S+ D SLF+ G DT Y+L
Sbjct: 303 DAARPADVCLLSRSLYGLRQAPRAWFKRFADHVTSLGFVQSRADPSLFVLRRGSDTAYLL 362
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDD+IL+ SS SL II L++EF + D+GPL YFLG+ R + G L QSKYA +
Sbjct: 363 LYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYATN 422
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
++ RA M NCK TP D K KLS+ G F DS+ YRS+ GALQYLT TRPDI+YAVQQ
Sbjct: 423 VLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSITGALQYLTLTRPDIAYAVQQ 482
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
+CL+MH PR +H LKRI+RYI+GT FGLHL ST L+A+SDADW GCPDTRRSTS
Sbjct: 483 VCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTS 542
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
G+C++LGD+LISWS+KRQ T+SRSSAEAEYRGVAN VAE WLR LL ELHC + +AT+
Sbjct: 543 GFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIA 602
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDN+S++Y+S NPV+H+R KHIE+DIHFVREKVALG++ VL + + +Q+AD+FTKGLP
Sbjct: 603 YCDNISSVYMSKNPVHHKRIKHIELDIHFVREKVALGELRVLPISSAHQFADVFTKGLPS 662
Query: 798 PLFDEFRSSLSI 809
+F+EFR+SL +
Sbjct: 663 SMFNEFRASLCV 674
>emb|CAE04646.2| OSJNBa0061G20.2 [Oryza sativa (japonica cultivar-group)]
gi|50923461|ref|XP_472091.1| OSJNBa0061G20.2 [Oryza
sativa (japonica cultivar-group)]
Length = 542
Score = 488 bits (1255), Expect = e-136
Identities = 228/380 (60%), Positives = 294/380 (77%), Gaps = 1/380 (0%)
Query: 430 HASASWIRDRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTH 489
H A ++ D + PD VCLL+KSLYGLKQAPRAW+QRF + L +GFV+SK+D+SLF+
Sbjct: 151 HQPAGFV-DPSQPDAVCLLRKSLYGLKQAPRAWFQRFGTHLHHLGFVSSKSDNSLFVLRR 209
Query: 490 GDDTTYILLYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFL 549
G D ++LLYVDDI+L SS L II LR EF++ DLGP+++FLG+ R + G FL
Sbjct: 210 GTDEAHLLLYVDDIVLAASSQRLLQHIINQLRVEFAMKDLGPVHFFLGIQVRRTADGFFL 269
Query: 550 HQSKYAEDIISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRP 609
Q +YA D++ RA + +CKPA TP+DTK+K+S+T+G+ + D T YRS+ GALQYLT TRP
Sbjct: 270 SQEQYAGDVLDRAGLADCKPAPTPIDTKAKVSSTTGQPYSDPTFYRSIVGALQYLTLTRP 329
Query: 610 DISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGC 669
D+SYAVQQ+CL+MH PR H+ +KRI+RY++GT GL L S+ +L+AYSD DW GC
Sbjct: 330 DLSYAVQQVCLHMHSPRDVHWTLVKRILRYVRGTTHKGLQLRRSSTPSLTAYSDVDWAGC 389
Query: 670 PDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHC 729
PDTRRSTSG+CV+ GD+ SWS+KRQ+ +SRSSAEAEYRGVAN AE CWLR+LL ELH
Sbjct: 390 PDTRRSTSGFCVFFGDSSESWSSKRQSVVSRSSAEAEYRGVANAAAECCWLRHLLGELHV 449
Query: 730 PISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYAD 789
+ KAT+VYCDN+SA+YLS NP++H R KH+E+D+HFVREKVA+G + V H+PTR Q AD
Sbjct: 450 KLDKATLVYCDNISAVYLSKNPLHHGRAKHVELDVHFVREKVAVGDIRVAHIPTRQQLAD 509
Query: 790 IFTKGLPKPLFDEFRSSLSI 809
I TK LP LF++FRSSL I
Sbjct: 510 IMTKRLPTALFEDFRSSLCI 529
>emb|CAE05956.3| OSJNBb0088C09.15 [Oryza sativa (japonica cultivar-group)]
gi|32487794|emb|CAE05417.1| OSJNBa0035I04.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1246
Score = 475 bits (1223), Expect = e-132
Identities = 232/372 (62%), Positives = 282/372 (75%)
Query: 442 PDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYVD 501
PD VCLL++SLYGLKQAPRAWYQRFA+++ +GF S +D SLFI GD Y+LLYVD
Sbjct: 868 PDAVCLLQRSLYGLKQAPRAWYQRFATYIRQLGFTPSASDTSLFILRDGDRLAYLLLYVD 927
Query: 502 DIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISR 561
DIIL SS L I A L +EF++TDLG L++FLG+S R LFL Q +YA D++ R
Sbjct: 928 DIILMASSAELLCHITARLHTEFAMTDLGDLHFFLGISVRRTPDDLFLSQRQYAVDLLQR 987
Query: 562 AKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQICLY 621
A M P TPVD ++KLSA+ G D T YRSLA ALQYLT TRP+I+YAVQQ+C +
Sbjct: 988 AGMSEYHPTATPVDARAKLSASEGAPVADPTEYRSLADALQYLTLTRPEIAYAVQQVCRF 1047
Query: 622 MHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCV 681
MHDP H A +KRI+RYI+G+ GLH+ V +L+AYSDADW GCPD+RRSTSGYC+
Sbjct: 1048 MHDPHEPHLALVKRIMRYIKGSLSAGLHIGTGPVGSLTAYSDADWAGCPDSRRSTSGYCI 1107
Query: 682 YLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVVYCDN 741
+LGDNL+SWS+KRQ T+SRSSAEAEYR VA+ +AE C LR LL ELH PIS TVV+CDN
Sbjct: 1108 FLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCCLRQLLQELHAPISTTTVVFCDN 1167
Query: 742 VSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPKPLFD 801
VSA Y++ NPV+H+ TKHIE+DIHFVREKVALGQV VLHVP+ +Q+ D TKGLP LF
Sbjct: 1168 VSAAYMTANPVHHRCTKHIEIDIHFVREKVALGQVRVLHVPSTHQFPDFMTKGLPVQLFT 1227
Query: 802 EFRSSLSIHPPP 813
+FRSSL + PP
Sbjct: 1228 DFRSSLCVRDPP 1239
>gb|AAX92854.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 336
Score = 391 bits (1004), Expect = e-107
Identities = 208/357 (58%), Positives = 249/357 (69%), Gaps = 24/357 (6%)
Query: 445 VCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYVDDII 504
VC L KSLYGL QAPRAWY RFA+FL T+GF + D SLFI T G D YILLYVDDI+
Sbjct: 2 VCCLNKSLYGLNQAPRAWYSRFANFLLTLGFTEACFDTSLFIYTRGSDVVYILLYVDDIV 61
Query: 505 LTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISRAKM 564
LT SS SL IAAL++EFS+ DLG L++FLG+S R S ++L Q +Y DI+ RA M
Sbjct: 62 LTASSDSLLRWTIAALQAEFSMKDLGTLDHFLGISVCRTSASMYLSQRQYILDILDRAGM 121
Query: 565 VNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQICLYMHD 624
+CKP TPVDT +KLSA G+ D T +RSLAGALQYLTFT
Sbjct: 122 SDCKPCSTPVDTNAKLSAVDGDSVADPTDFRSLAGALQYLTFT----------------- 164
Query: 625 PRTSHFAALKRIIRYI-QGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCVYL 683
TSH + + + + G++ L LS + +L AYSDADW GCP+ RRSTSGY V+L
Sbjct: 165 DLTSHMLSSRSVSTCMTHGSRT--LPLSSAFFVDLVAYSDADWAGCPNMRRSTSGYVVFL 222
Query: 684 GDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVVYCDNVS 743
GDNL+SWS+K Q TLSRSSA+A+YR VAE+CWLR LL ELH P SKATVVYCDNV+
Sbjct: 223 GDNLVSWSSKHQNTLSRSSAKAKYR----AVAETCWLRQLLNELHSPPSKATVVYCDNVN 278
Query: 744 AIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPKPLF 800
A+YL NP HQRTKH+E+D+HFVR++V G V VLHVPT QYADIFTKGLP +F
Sbjct: 279 AVYLFTNPEQHQRTKHVEIDLHFVRDRVDAGVVRVLHVPTTSQYADIFTKGLPSSVF 335
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078
gi|25301706|pir||C86438 hypothetical protein F28K20.17 -
Arabidopsis thaliana
Length = 1415
Score = 386 bits (992), Expect = e-105
Identities = 192/376 (51%), Positives = 248/376 (65%), Gaps = 2/376 (0%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D P HVC L K++YGLKQAPRAW+ F++FL GFV SK+D SLF+ Y+L
Sbjct: 992 DPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLL 1051
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDDI+LT S SL + ++ AL++ FS+ DLGP YFLG+ ++ GLFLHQ+ YA D
Sbjct: 1052 LYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATD 1111
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
I+ +A M +C P TP+ +L + E F + T +RSLAG LQYLT TRPDI +AV
Sbjct: 1112 ILQQAGMSDCNPMPTPLP--QQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNF 1169
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
IC MH P TS F LKRI+RYI+GT GL + ++ LSAYSD+D GC +TRRST+
Sbjct: 1170 ICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTT 1229
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
G+C+ LG NLISWSAKRQ T+S SS EAEYR + E W+ LL +L P T V
Sbjct: 1230 GFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQV 1289
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
YCDN+SA+YLS NP H R+KH + D H++RE+VALG + H+ +Q AD+FTK LP+
Sbjct: 1290 YCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPR 1349
Query: 798 PLFDEFRSSLSIHPPP 813
F + RS L + P
Sbjct: 1350 RAFVDLRSKLGVSGSP 1365
>ref|XP_506588.1| PREDICTED P0597G07.109 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 296
Score = 385 bits (988), Expect = e-105
Identities = 174/282 (61%), Positives = 226/282 (79%)
Query: 528 DLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISRAKMVNCKPALTPVDTKSKLSATSGEK 587
DLGP+++FLG+ R + G FL Q +YA +++ RA + +CKPA TPVDTK+K+S+T+G+
Sbjct: 2 DLGPVHFFLGIQVRRTADGFFLSQEQYAGNVLDRASLADCKPAPTPVDTKAKVSSTTGQP 61
Query: 588 FDDSTLYRSLAGALQYLTFTRPDISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFG 647
+ D T YRS+ GALQYLT TRPD+SYAVQQ+CL+MH PR H+ +KRI+RY++GT G
Sbjct: 62 YSDPTFYRSIVGALQYLTLTRPDLSYAVQQVCLHMHSPRDVHWTLVKRILRYVRGTTHKG 121
Query: 648 LHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEY 707
L L S+ +L+AYSDADW GCPDTRRSTSG+CV+ GD+L+SWS+KRQ+ +SRSSAEAEY
Sbjct: 122 LQLRRSSTPSLTAYSDADWAGCPDTRRSTSGFCVFFGDSLVSWSSKRQSIVSRSSAEAEY 181
Query: 708 RGVANVVAESCWLRNLLLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFV 767
RGVAN AE CWL +LL +LH + KA +VYCDN+SA+YLS NPV+H R KH+E+D+HFV
Sbjct: 182 RGVANAAAECCWLHHLLGKLHVKLDKAMLVYCDNISAVYLSKNPVHHGRAKHVELDVHFV 241
Query: 768 REKVALGQVHVLHVPTRYQYADIFTKGLPKPLFDEFRSSLSI 809
EKVA+G + V+H+PTR Q ADI TKGLP LF++FRSSL I
Sbjct: 242 WEKVAVGDIRVVHIPTRQQLADIMTKGLPTALFEDFRSSLCI 283
>emb|CAB79576.1| putative protein [Arabidopsis thaliana] gi|3269282|emb|CAA19715.1|
putative protein [Arabidopsis thaliana]
gi|7444417|pir||T05745 hypothetical protein M4I22.20 -
Arabidopsis thaliana
Length = 1318
Score = 384 bits (987), Expect = e-105
Identities = 185/376 (49%), Positives = 245/376 (64%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D + PDHVCLL KS+YGLKQ+PRAW+ +F++FL GF SK+D SLFI H ++ +L
Sbjct: 846 DPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLL 905
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDD+++T +S +++AAL EF +TD+G L+YFLG+ R GLF+ Q KYAED
Sbjct: 906 LYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQVQRQQNGLFMSQQKYAED 965
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
++ A M +C P TP+ + E F D T +RS+AG LQYLT TRPDI +AV
Sbjct: 966 LLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNF 1025
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
+C MH P S F LKRI+RYI+GT G+ S + T L AYSD+DWG C TRRS
Sbjct: 1026 VCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNCKQTRRSVG 1085
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
G C ++G NL+SWS+K+ T+SRSS EAEY+ +++ +E WL LL EL P+ +
Sbjct: 1086 GLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPEL 1145
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
+CDN+SA+YL+ NP H RTKH ++D HFVRE+VAL + V H+P Q ADIFTK LP
Sbjct: 1146 FCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQIADIFTKSLPY 1205
Query: 798 PLFDEFRSSLSIHPPP 813
F R L + P
Sbjct: 1206 EAFIHLRGKLGVTLSP 1221
>gb|AAP53968.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37534758|ref|NP_921681.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 932
Score = 379 bits (973), Expect = e-103
Identities = 188/374 (50%), Positives = 254/374 (67%), Gaps = 2/374 (0%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
++ P+++C L K+LYGLKQAPRAWY R ++ L +GF++SK D SLF G T +IL
Sbjct: 558 NKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCTIFIL 617
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
+YVDDII+ +SS + ++ L +F+L DLG L+YFLG+ + S GL L Q+ YA D
Sbjct: 618 VYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASD 677
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAV 615
I+ RA M CKPA TP+ T KLS G+ +D++ YRS+ GALQYLT TR D+S+ V
Sbjct: 678 ILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLV 737
Query: 616 QQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRS 675
++C ++H P T H++A+KRI+RYI+GT EFGL S +SA+SDADW GC D RRS
Sbjct: 738 NKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRS 797
Query: 676 TSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKAT 735
T G+ V+LG NLISWSA++QAT+SRSS EAEY+ +AN E W+R +L EL
Sbjct: 798 TGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVA 857
Query: 736 VVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGL 795
++CDN+ A YLS NPV H RTKHIE+D HFVRE+VA + + + T Q AD FTK L
Sbjct: 858 QLWCDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSL 917
Query: 796 PKPLFDEFRSSLSI 809
P P ++R +L++
Sbjct: 918 PAPSLAQYRHNLNL 931
>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 375 bits (964), Expect = e-102
Identities = 185/376 (49%), Positives = 242/376 (64%), Gaps = 2/376 (0%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D N P+HVC L K+LYGLKQAPRAW+ F++FL GF S +D SLF+ + +L
Sbjct: 1010 DPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLDFGFECSTSDPSLFVCHQNGQSLILL 1069
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDDI+LT S L D ++ AL + FS+ DLGP YFLG+ ++ GLFLHQ YA D
Sbjct: 1070 LYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEIESYNNGLFLHQHAYASD 1129
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
I+ +A M C P TP+ L + E F++ T +RSLAG LQYLT TRPDI YAV
Sbjct: 1130 ILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRSLAGKLQYLTITRPDIQYAVNF 1187
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
IC MH P S F LKRI+RY++GT GL + LS + D+D+ GC DTRRST+
Sbjct: 1188 ICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKHHNPVLSGFCDSDYAGCKDTRRSTT 1247
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
G+C+ LG LISWSAKRQ T+S SS EAEYR +++ E W+ +LL +L + T V
Sbjct: 1248 GFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWISSLLRDLGISQHQPTRV 1307
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
+CDN+SA+YLS NP H+R+KH + D H++RE+VALG + H+P Q AD+FTK LP+
Sbjct: 1308 FCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQHIPATIQLADVFTKSLPR 1367
Query: 798 PLFDEFRSSLSIHPPP 813
F R+ L + P
Sbjct: 1368 RPFITLRAKLGVSASP 1383
>gb|AAD43604.1| T3P18.3 [Arabidopsis thaliana] gi|25301688|pir||H96650 protein
T3P18.3 [imported] - Arabidopsis thaliana
Length = 1309
Score = 375 bits (964), Expect = e-102
Identities = 185/376 (49%), Positives = 242/376 (64%), Gaps = 2/376 (0%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D N P+HVC L K+LYGLKQAPRAW+ F++FL GF S +D SLF+ + +L
Sbjct: 853 DPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLDFGFECSTSDPSLFVCHQNGQSLILL 912
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDDI+LT S L D ++ AL + FS+ DLGP YFLG+ ++ GLFLHQ YA D
Sbjct: 913 LYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEIESYNNGLFLHQHAYASD 972
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
I+ +A M C P TP+ L + E F++ T +RSLAG LQYLT TRPDI YAV
Sbjct: 973 ILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRSLAGKLQYLTITRPDIQYAVNF 1030
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
IC MH P S F LKRI+RY++GT GL + LS + D+D+ GC DTRRST+
Sbjct: 1031 ICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKHHNPVLSGFCDSDYAGCKDTRRSTT 1090
Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
G+C+ LG LISWSAKRQ T+S SS EAEYR +++ E W+ +LL +L + T V
Sbjct: 1091 GFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWISSLLRDLGISQHQPTRV 1150
Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
+CDN+SA+YLS NP H+R+KH + D H++RE+VALG + H+P Q AD+FTK LP+
Sbjct: 1151 FCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQHIPATIQLADVFTKSLPR 1210
Query: 798 PLFDEFRSSLSIHPPP 813
F R+ L + P
Sbjct: 1211 RPFITLRAKLGVSASP 1226
>ref|XP_507316.1| PREDICTED P0623F08.22 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 821
Score = 375 bits (963), Expect = e-102
Identities = 182/373 (48%), Positives = 253/373 (67%), Gaps = 2/373 (0%)
Query: 439 RNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILL 498
++ P++VC L K+LYGLKQAPRAWY R ++ LS +GFV SK D SLF G + ++L+
Sbjct: 440 KSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLI 499
Query: 499 YVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDI 558
YVDDII+ +S T++ L +F+L DLG L+YFLG+ + GL L Q KYA D+
Sbjct: 500 YVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDL 559
Query: 559 ISRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAVQ 616
+ R M CKP TP+ T KLS G DST YRS+ GALQYLT TRPDIS+++
Sbjct: 560 LRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSIN 619
Query: 617 QICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRST 676
++C ++H P T+H+AA+KRI+RY++ T + GL + +S +SDADW G PD RRST
Sbjct: 620 KVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRST 679
Query: 677 SGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATV 736
G+ V+LG NL+SWSA++QAT+SRSS EAEY+ +AN AE W++ LL EL +A
Sbjct: 680 GGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAK 739
Query: 737 VYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLP 796
++CDN+ A YLS NP+ H RTKHIE+D HFVRE+VA + + ++ T+ Q AD FTK +P
Sbjct: 740 LWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIP 799
Query: 797 KPLFDEFRSSLSI 809
+ F+++L++
Sbjct: 800 VRQMEMFKNNLNL 812
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1247
Score = 374 bits (961), Expect = e-102
Identities = 187/374 (50%), Positives = 249/374 (66%), Gaps = 2/374 (0%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D + P +VC L K+LYGLKQAPRAWY R + L +GF SK D SLF GD ++L
Sbjct: 871 DSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVL 930
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
+YVDDII+T+S ++ L+ EF+L DLG L+YFLG+ T+ SGG+ L Q KY D
Sbjct: 931 IYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVND 990
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAV 615
++ R M +CKP TP+ T KLS G+ +D+T YRS+ GALQYLT TRPDI++ V
Sbjct: 991 LLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPV 1050
Query: 616 QQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRS 675
++C ++H P T H+AA+KRI+RY++ GL LS S +SAYSDADW G D RRS
Sbjct: 1051 NKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVSAYSDADWAGSLDDRRS 1110
Query: 676 TSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKAT 735
T G+ V+LGDNL+SWSA++QAT+SRSS E+EY+ +AN AE W++ LL EL
Sbjct: 1111 TGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMA 1170
Query: 736 VVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGL 795
++CDN+ A YLS NPV H RTKHIE+D HFVRE+V+ + + VPT Q AD FTK L
Sbjct: 1171 KLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKAL 1230
Query: 796 PKPLFDEFRSSLSI 809
+ F+ +L++
Sbjct: 1231 SVRQLENFKYNLNL 1244
>ref|XP_470329.1| putative copia-like retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|40714683|gb|AAR88589.1| putative
copia-like retrotransposon protein [Oryza sativa
(japonica cultivar-group)]
Length = 1399
Score = 374 bits (961), Expect = e-102
Identities = 182/373 (48%), Positives = 253/373 (67%), Gaps = 2/373 (0%)
Query: 439 RNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILL 498
++ P++VC L K+LYGLKQAPRAWY R ++ LS +GFV SK D SLF G + ++L+
Sbjct: 1018 KSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLI 1077
Query: 499 YVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDI 558
YVDDII+ +S T++ L +F+L DLG L+YFLG+ + GL L Q KYA D+
Sbjct: 1078 YVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDL 1137
Query: 559 ISRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAVQ 616
+ R M CKP TP+ T KLS G DST YRS+ GALQYLT TRPDIS+++
Sbjct: 1138 LRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSIN 1197
Query: 617 QICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRST 676
++C ++H P T+H+AA+KRI+RY++ T + GL + +S +SDADW G PD RRST
Sbjct: 1198 KVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRST 1257
Query: 677 SGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATV 736
G+ V+LG NL+SWSA++QAT+SRSS EAEY+ +AN AE W++ LL EL +A
Sbjct: 1258 GGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAK 1317
Query: 737 VYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLP 796
++CDN+ A YLS NP+ H RTKHIE+D HFVRE+VA + + ++ T+ Q AD FTK +P
Sbjct: 1318 LWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIP 1377
Query: 797 KPLFDEFRSSLSI 809
+ F+++L++
Sbjct: 1378 VRQMEMFKNNLNL 1390
>gb|AAF02855.1| Similar to retrotransposon proteins [Arabidopsis thaliana]
gi|25301689|pir||C96578 hypothetical protein T18A20.5
[imported] - Arabidopsis thaliana
Length = 1522
Score = 374 bits (960), Expect = e-102
Identities = 179/385 (46%), Positives = 250/385 (64%), Gaps = 9/385 (2%)
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D++ PDHVCLL KSLYGLKQ+PRAW+ RF++FL GF+ S D SLF+ + +D +L
Sbjct: 1048 DKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLL 1107
Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
LYVDD+++T ++ ++AAL EF + D+G ++YFLG+ + GGLF+ Q KYAED
Sbjct: 1108 LYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYFLGIQIQTYDGGLFMSQQKYAED 1167
Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
++ A M NC P TP+ + + E F D T +RSLAG LQYLT TRPDI +AV
Sbjct: 1168 LLITASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNF 1227
Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVT---------NLSAYSDADWGG 668
+C MH P S F LKRI+RYI+GT G+ + ++ + +LSAYSD+D+
Sbjct: 1228 VCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSSSVVSAYESDYDLSAYSDSDYAN 1287
Query: 669 CPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELH 728
C +TRRS GYC ++G N+ISWS+K+Q T+SRSS EAEYR ++ +E W+ ++L E+
Sbjct: 1288 CKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIG 1347
Query: 729 CPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYA 788
+ ++CDN+SA+YL+ NP H RTKH ++D H++RE+VAL + V H+P Q A
Sbjct: 1348 VSLPDTPELFCDNLSAVYLTANPAFHARTKHFDVDHHYIRERVALKTLVVKHIPGHLQLA 1407
Query: 789 DIFTKGLPKPLFDEFRSSLSIHPPP 813
DIFTK LP F R L + PP
Sbjct: 1408 DIFTKSLPFEAFTRLRFKLGVDFPP 1432
>ref|XP_476197.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46981245|gb|AAT07563.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1431
Score = 374 bits (959), Expect = e-102
Identities = 186/368 (50%), Positives = 252/368 (67%), Gaps = 2/368 (0%)
Query: 444 HVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYVDDI 503
+VC L K+LYGLKQAPRAWY R ++ L +GF +SK+D SLF + GD ++L+YVDDI
Sbjct: 1060 YVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDI 1119
Query: 504 ILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISRAK 563
I+ +SS + ++ L EF+L DLG L+YFLG+ + G+ L Q KYA D++ R
Sbjct: 1120 IVASSSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVN 1179
Query: 564 MVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAVQQICLY 621
M +CK TP+ KLSA G F +DST YRSL GALQYLT TRPD+S++V ++C Y
Sbjct: 1180 MSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQY 1239
Query: 622 MHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCV 681
+H P T H+AA KRI+RY++ T + GL +S S +SA+SDADW GC D R ST G+ V
Sbjct: 1240 LHAPTTKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAV 1299
Query: 682 YLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVVYCDN 741
++G NL+SWSA++QAT+SRSS EAEY+ +ANV AE W++ LL EL K V+CDN
Sbjct: 1300 FIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDN 1359
Query: 742 VSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPKPLFD 801
+ A Y++ NPV H RTKHIE+D HFVRE+VA + V ++ T+ Q AD FTK L +
Sbjct: 1360 IGAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVRQLE 1419
Query: 802 EFRSSLSI 809
FR++L++
Sbjct: 1420 MFRNNLNL 1427
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,336,450,839
Number of Sequences: 2540612
Number of extensions: 54843671
Number of successful extensions: 174024
Number of sequences better than 10.0: 1620
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 170659
Number of HSP's gapped (non-prelim): 2022
length of query: 813
length of database: 863,360,394
effective HSP length: 136
effective length of query: 677
effective length of database: 517,837,162
effective search space: 350575758674
effective search space used: 350575758674
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 79 (35.0 bits)
Medicago: description of AC144721.10