BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144720.4 + phase: 0
(83 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF02808.1| putative RNA binding protein [Arabidopsis thaliana] 119 1e-26
dbj|BAC42549.1| putative RNA binding protein [Arabidopsis thalia... 117 7e-26
ref|NP_187647.2| pumilio/Puf RNA-binding domain-containing prote... 117 7e-26
ref|XP_468426.1| pumilio-like [Oryza sativa (japonica cultivar-g... 107 1e-22
ref|NP_915465.1| putative pumilio/Mpt5 family RNA-binding protei... 105 4e-22
gb|AAC95220.1| putative pumilio/Mpt5 family RNA-binding protein ... 103 9e-22
gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein ... 103 1e-21
gb|AAC95216.1| putative pumilio/Mpt5 family RNA-binding protein ... 103 1e-21
gb|AAC95215.1| putative pumilio/Mpt5 family RNA-binding protein ... 100 7e-21
ref|XP_474813.1| OSJNBa0014F04.24 [Oryza sativa (japonica cultiv... 99 4e-20
emb|CAE02858.2| OSJNBa0014F04.24 [Oryza sativa (japonica cultiva... 99 4e-20
ref|NP_914350.1| P0518C01.14 [Oryza sativa (japonica cultivar-gr... 97 8e-20
gb|AAM22812.1| BPM [Hordeum vulgare] 97 8e-20
dbj|BAD87365.1| putative pumilio domain-containing protein PPD1 ... 97 8e-20
ref|XP_493876.1| putative pumilio/Mpt5 family RNA-binding protei... 96 2e-19
gb|AAU44141.1| putative pumilio/Mpt5 family RNA-binding protein ... 96 2e-19
ref|XP_483360.1| putative pumilio-family RNA-binding domain-cont... 89 4e-17
dbj|BAB01884.1| RNA binding protein-like [Arabidopsis thaliana] 76 2e-13
ref|NP_188660.3| pumilio/Puf RNA-binding domain-containing prote... 76 2e-13
emb|CAB79443.1| pumilio-like protein [Arabidopsis thaliana] gi|4... 72 4e-12
>gb|AAF02808.1| putative RNA binding protein [Arabidopsis thaliana]
Length = 1031
Score = 119 bits (299), Expect = 1e-26
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKDPFGNYVVQKVLETCDDQSL LILSRIKVHLNALKRYTYGKHIV+RVEKLITTG
Sbjct: 928 LQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIVARVEKLITTG 987
Query: 61 G 61
G
Sbjct: 988 G 988
Score = 34.7 bits (78), Expect = 0.63
Identities = 15/56 (26%), Positives = 30/56 (52%)
Query: 2 QAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLI 57
+ +M D FGNYV+QK E + + + ++ H+ AL YG ++ + +++
Sbjct: 706 RTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVV 761
Score = 32.0 bits (71), Expect = 4.1
Identities = 15/47 (31%), Positives = 25/47 (52%)
Query: 7 DPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
D GN+V+QK +E ++ I+S + AL + YG ++ RV
Sbjct: 783 DQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRV 829
Score = 30.8 bits (68), Expect = 9.1
Identities = 15/52 (28%), Positives = 29/52 (54%), Gaps = 1/52 (1%)
Query: 3 AMMKDPFGNYVVQKVLETCDD-QSLELILSRIKVHLNALKRYTYGKHIVSRV 53
A+ P+G V+Q+VLE DD ++ +I+ I + L + YG +++ +
Sbjct: 815 ALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHI 866
>dbj|BAC42549.1| putative RNA binding protein [Arabidopsis thaliana]
gi|28950903|gb|AAO63375.1| At3g10360 [Arabidopsis
thaliana]
Length = 330
Score = 117 bits (293), Expect = 7e-26
Identities = 57/60 (95%), Positives = 59/60 (98%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKDPFGNYVVQKVLETCDDQSL LILSRIKVHLNALKRYTYGKHIV+RVEKLITTG
Sbjct: 255 LQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIVARVEKLITTG 314
Score = 34.7 bits (78), Expect = 0.63
Identities = 15/56 (26%), Positives = 30/56 (52%)
Query: 2 QAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLI 57
+ +M D FGNYV+QK E + + + ++ H+ AL YG ++ + +++
Sbjct: 33 RTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVV 88
Score = 32.0 bits (71), Expect = 4.1
Identities = 15/47 (31%), Positives = 25/47 (52%)
Query: 7 DPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
D GN+V+QK +E ++ I+S + AL + YG ++ RV
Sbjct: 110 DQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRV 156
Score = 30.8 bits (68), Expect = 9.1
Identities = 15/52 (28%), Positives = 29/52 (54%), Gaps = 1/52 (1%)
Query: 3 AMMKDPFGNYVVQKVLETCDD-QSLELILSRIKVHLNALKRYTYGKHIVSRV 53
A+ P+G V+Q+VLE DD ++ +I+ I + L + YG +++ +
Sbjct: 142 ALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHI 193
>ref|NP_187647.2| pumilio/Puf RNA-binding domain-containing protein [Arabidopsis
thaliana]
Length = 1003
Score = 117 bits (293), Expect = 7e-26
Identities = 57/60 (95%), Positives = 59/60 (98%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKDPFGNYVVQKVLETCDDQSL LILSRIKVHLNALKRYTYGKHIV+RVEKLITTG
Sbjct: 928 LQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIVARVEKLITTG 987
Score = 34.7 bits (78), Expect = 0.63
Identities = 15/56 (26%), Positives = 30/56 (52%)
Query: 2 QAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLI 57
+ +M D FGNYV+QK E + + + ++ H+ AL YG ++ + +++
Sbjct: 706 RTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVV 761
Score = 32.0 bits (71), Expect = 4.1
Identities = 15/47 (31%), Positives = 25/47 (52%)
Query: 7 DPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
D GN+V+QK +E ++ I+S + AL + YG ++ RV
Sbjct: 783 DQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRV 829
Score = 30.8 bits (68), Expect = 9.1
Identities = 15/52 (28%), Positives = 29/52 (54%), Gaps = 1/52 (1%)
Query: 3 AMMKDPFGNYVVQKVLETCDD-QSLELILSRIKVHLNALKRYTYGKHIVSRV 53
A+ P+G V+Q+VLE DD ++ +I+ I + L + YG +++ +
Sbjct: 815 ALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHI 866
>ref|XP_468426.1| pumilio-like [Oryza sativa (japonica cultivar-group)]
gi|48716356|dbj|BAD22967.1| pumilio-like [Oryza sativa
(japonica cultivar-group)]
Length = 1001
Score = 107 bits (266), Expect = 1e-22
Identities = 52/60 (86%), Positives = 55/60 (91%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKD F NYVVQKVLETCDDQ+ ELILSRIKVHLNALKRYTYGKHIV+RVEKLI G
Sbjct: 931 LQAMMKDQFANYVVQKVLETCDDQNRELILSRIKVHLNALKRYTYGKHIVARVEKLIAAG 990
Score = 35.4 bits (80), Expect = 0.37
Identities = 15/49 (30%), Positives = 27/49 (54%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+V+QK +E + + I+S H+ L + YG ++ RV
Sbjct: 784 VRDQNGNHVIQKCIECIPQERIRFIISAFYGHVVELSTHPYGCRVIQRV 832
Score = 34.7 bits (78), Expect = 0.63
Identities = 21/88 (23%), Positives = 39/88 (43%), Gaps = 10/88 (11%)
Query: 2 QAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITT-- 59
+ +M D FGNYV+QK E + + + S +K ++ L YG ++ + +++
Sbjct: 709 RTLMTDVFGNYVIQKFFEYGTEPQKKQLASLLKGYVLQLSLQMYGCRVIQKALEMVEVEQ 768
Query: 60 --------GGNECKLLRYMNSHLLSLNC 79
GN K +R N + + C
Sbjct: 769 QTQMALELDGNIMKCVRDQNGNHVIQKC 796
>ref|NP_915465.1| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa
(japonica cultivar-group)] gi|20160612|dbj|BAB89558.1|
putative pumilio domain-containing protein PPD1 [Oryza
sativa (japonica cultivar-group)]
Length = 1048
Score = 105 bits (261), Expect = 4e-22
Identities = 49/60 (81%), Positives = 55/60 (91%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKD FGNYVVQKVLETCDDQ ELILSR+KVHL+ALK+YTYGKHIV+RVEKL+ G
Sbjct: 977 LQAMMKDQFGNYVVQKVLETCDDQQRELILSRVKVHLSALKKYTYGKHIVARVEKLVAAG 1036
Score = 35.0 bits (79), Expect = 0.49
Identities = 15/49 (30%), Positives = 28/49 (56%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+V+QK +E + S++ I+S + L + YG ++ RV
Sbjct: 830 VRDQNGNHVIQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCRVIQRV 878
Score = 34.7 bits (78), Expect = 0.63
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGN 62
++M D FGNYVVQK E + ++ H+ AL YG ++ + +++
Sbjct: 756 SLMTDVFGNYVVQKFFEHGSAAQRRELADQLFGHVLALSLQMYGCRVIQKAIEVVDL-DQ 814
Query: 63 ECKLLRYMNSHLL 75
+ K++ ++ H++
Sbjct: 815 KTKMVTELDGHIM 827
Score = 33.1 bits (74), Expect = 1.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGG 61
+ +D +GNYVVQ VLE +I+ ++ + + + + ++ VEK +T GG
Sbjct: 902 LAQDQYGNYVVQHVLEHGKPHERSVIIEKLAGQIIQMSQQKFASNV---VEKCLTFGG 956
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 8 PFGNYVVQKVLETC-DDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
P+G V+Q+VLE C D ++ E+++ I + L + YG ++V V
Sbjct: 869 PYGCRVIQRVLEHCTDPKTQEIVMDEILQSVCMLAQDQYGNYVVQHV 915
>gb|AAC95220.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana] gi|15227038|ref|NP_180478.1| pumilio/Puf
RNA-binding domain-containing protein [Arabidopsis
thaliana] gi|25354254|pir||A84693 hypothetical protein
At2g29140 [imported] - Arabidopsis thaliana
Length = 964
Score = 103 bits (258), Expect = 9e-22
Identities = 49/60 (81%), Positives = 54/60 (89%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKD F NYVVQKVLETCDDQ ELIL+RIKVHLNALK+YTYGKHIV+RVEKL+ G
Sbjct: 890 LQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAG 949
Score = 39.3 bits (90), Expect = 0.026
Identities = 17/49 (34%), Positives = 30/49 (60%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+VVQK +E ++++E I+S H+ L + YG ++ RV
Sbjct: 743 VRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRV 791
Score = 32.7 bits (73), Expect = 2.4
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+ +D +GNYVVQ VLE +I+ + + + + + ++ VEK +T GG E
Sbjct: 815 LTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNV---VEKCLTFGGPE 871
>gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana]
Length = 972
Score = 103 bits (257), Expect = 1e-21
Identities = 49/60 (81%), Positives = 53/60 (87%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKD F NYVVQKVLETCDDQ ELIL RIKVHLNALK+YTYGKHIV+RVEKL+ G
Sbjct: 898 LQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAG 957
Score = 36.6 bits (83), Expect = 0.17
Identities = 16/49 (32%), Positives = 30/49 (60%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+VVQK +E ++++E I+S ++ L + YG ++ RV
Sbjct: 751 VRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRV 799
Score = 32.3 bits (72), Expect = 3.1
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+ +D +GNYV+Q VLE +I+ + + + + + ++ VEK +T GG E
Sbjct: 823 LAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNV---VEKCLTFGGPE 879
Score = 30.8 bits (68), Expect = 9.1
Identities = 16/73 (21%), Positives = 37/73 (49%), Gaps = 1/73 (1%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGN 62
A+M D FGNYV+QK E + ++ ++ L YG ++ + +++
Sbjct: 677 ALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDL-DQ 735
Query: 63 ECKLLRYMNSHLL 75
+ K+++ ++ H++
Sbjct: 736 KIKMVKELDGHVM 748
>gb|AAC95216.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana] gi|15227051|ref|NP_180482.1| pumilio/Puf
RNA-binding domain-containing protein [Arabidopsis
thaliana] gi|25354256|pir||E84693 hypothetical protein
At2g29190 [imported] - Arabidopsis thaliana
Length = 972
Score = 103 bits (257), Expect = 1e-21
Identities = 49/60 (81%), Positives = 53/60 (87%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKD F NYVVQKVLETCDDQ ELIL RIKVHLNALK+YTYGKHIV+RVEKL+ G
Sbjct: 898 LQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAG 957
Score = 36.6 bits (83), Expect = 0.17
Identities = 16/49 (32%), Positives = 30/49 (60%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+VVQK +E ++++E I+S ++ L + YG ++ RV
Sbjct: 751 VRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRV 799
Score = 32.3 bits (72), Expect = 3.1
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+ +D +GNYV+Q VLE +I+ + + + + + ++ VEK +T GG E
Sbjct: 823 LAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNV---VEKCLTFGGPE 879
Score = 30.8 bits (68), Expect = 9.1
Identities = 16/73 (21%), Positives = 37/73 (49%), Gaps = 1/73 (1%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGN 62
A+M D FGNYV+QK E + ++ ++ L YG ++ + +++
Sbjct: 677 ALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDL-DQ 735
Query: 63 ECKLLRYMNSHLL 75
+ K+++ ++ H++
Sbjct: 736 KIKMVKELDGHVM 748
>gb|AAC95215.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana] gi|15227052|ref|NP_180483.1| pumilio/Puf
RNA-binding domain-containing protein [Arabidopsis
thaliana] gi|25354258|pir||F84693 hypothetical protein
At2g29200 [imported] - Arabidopsis thaliana
Length = 968
Score = 100 bits (250), Expect = 7e-21
Identities = 46/60 (76%), Positives = 53/60 (87%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
+QAMMKD F NYVVQKVLETCDDQ ELIL+RIKVHL ALK+YTYGKH+V+R+EKL+ G
Sbjct: 894 LQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAAG 953
Score = 39.3 bits (90), Expect = 0.026
Identities = 17/49 (34%), Positives = 30/49 (60%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+VVQK +E ++++E I+S H+ L + YG ++ RV
Sbjct: 747 VRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRV 795
Score = 32.7 bits (73), Expect = 2.4
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+ +D +GNYVVQ VLE +I+ + + + + + ++ VEK +T GG E
Sbjct: 819 LAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNV---VEKCLTFGGPE 875
Score = 32.0 bits (71), Expect = 4.1
Identities = 16/72 (22%), Positives = 36/72 (49%), Gaps = 1/72 (1%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+M D FGNYV+QK E + ++ H+ L YG ++ + +++ +
Sbjct: 674 LMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDL-DQK 732
Query: 64 CKLLRYMNSHLL 75
K+++ ++ H++
Sbjct: 733 IKMVKELDGHVM 744
>ref|XP_474813.1| OSJNBa0014F04.24 [Oryza sativa (japonica cultivar-group)]
gi|38345179|emb|CAE03335.2| OSJNBb0005B05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 795
Score = 98.6 bits (244), Expect = 4e-20
Identities = 47/80 (58%), Positives = 61/80 (75%)
Query: 2 QAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGG 61
Q +MKD FGNYVVQ++L+TCDD+ L +ILS IK+HLN LK YT+GKHIV+RVEKLI TG
Sbjct: 710 QGLMKDQFGNYVVQRILQTCDDKFLVVILSSIKMHLNELKNYTFGKHIVARVEKLIITGE 769
Query: 62 NECKLLRYMNSHLLSLNCSD 81
N ++ + SL+C+D
Sbjct: 770 NRVRMGSKTSQCQQSLSCTD 789
Score = 37.0 bits (84), Expect = 0.13
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
A+ D FGNYV+QK E + L + +++ H L YG +V +V
Sbjct: 491 ALTTDVFGNYVIQKFFEFATESQLSQLADQLRGHFLQLSFQMYGCRVVQKV 541
Score = 31.6 bits (70), Expect = 5.4
Identities = 15/49 (30%), Positives = 26/49 (52%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSR 52
+ +D FGNYVVQ VLE + I+ ++ + L + Y ++V +
Sbjct: 637 LTEDKFGNYVVQHVLEHGRPEERSSIIQKLSGQVVNLSQQKYASNVVEK 685
>emb|CAE02858.2| OSJNBa0014F04.24 [Oryza sativa (japonica cultivar-group)]
Length = 623
Score = 98.6 bits (244), Expect = 4e-20
Identities = 47/80 (58%), Positives = 61/80 (75%)
Query: 2 QAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGG 61
Q +MKD FGNYVVQ++L+TCDD+ L +ILS IK+HLN LK YT+GKHIV+RVEKLI TG
Sbjct: 538 QGLMKDQFGNYVVQRILQTCDDKFLVVILSSIKMHLNELKNYTFGKHIVARVEKLIITGE 597
Query: 62 NECKLLRYMNSHLLSLNCSD 81
N ++ + SL+C+D
Sbjct: 598 NRVRMGSKTSQCQQSLSCTD 617
Score = 37.0 bits (84), Expect = 0.13
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
A+ D FGNYV+QK E + L + +++ H L YG +V +V
Sbjct: 319 ALTTDVFGNYVIQKFFEFATESQLSQLADQLRGHFLQLSFQMYGCRVVQKV 369
Score = 31.6 bits (70), Expect = 5.4
Identities = 15/49 (30%), Positives = 26/49 (52%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSR 52
+ +D FGNYVVQ VLE + I+ ++ + L + Y ++V +
Sbjct: 465 LTEDKFGNYVVQHVLEHGRPEERSSIIQKLSGQVVNLSQQKYASNVVEK 513
>ref|NP_914350.1| P0518C01.14 [Oryza sativa (japonica cultivar-group)]
Length = 909
Score = 97.4 bits (241), Expect = 8e-20
Identities = 44/60 (73%), Positives = 51/60 (84%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
++ MMKD F NYVVQKVLETCDDQ E+IL+RIK HLN LK+YTYGKHIV+RVEKL+ G
Sbjct: 838 LEVMMKDQFANYVVQKVLETCDDQQREMILTRIKAHLNTLKKYTYGKHIVARVEKLVAAG 897
Score = 32.7 bits (73), Expect = 2.4
Identities = 14/49 (28%), Positives = 27/49 (54%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+V+QK +E +++ I+S + L + YG ++ RV
Sbjct: 691 VRDQNGNHVIQKCIECIPQHAIQFIVSTFYGQVVMLSTHPYGCRVIQRV 739
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 8 PFGNYVVQKVLETCDD-QSLELILSRIKVHLNALKRYTYGKHIVSRV 53
P+G V+Q+VLE CDD ++ ++++ I + L YG ++V V
Sbjct: 730 PYGCRVIQRVLEHCDDPKTQQIMMDEILQSVCLLATDQYGNYVVQHV 776
>gb|AAM22812.1| BPM [Hordeum vulgare]
Length = 911
Score = 97.4 bits (241), Expect = 8e-20
Identities = 44/60 (73%), Positives = 51/60 (84%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
++ MMKD F NYVVQKVLETCDDQ E+IL+RIK HLN LK+YTYGKHIV+RVEKL+ G
Sbjct: 839 LEVMMKDQFANYVVQKVLETCDDQQREMILTRIKAHLNTLKKYTYGKHIVARVEKLVAAG 898
Score = 33.5 bits (75), Expect = 1.4
Identities = 17/72 (23%), Positives = 37/72 (50%), Gaps = 1/72 (1%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+M D FGNYVVQK E ++ + ++ + AL YG ++ + +++ +
Sbjct: 619 LMTDVFGNYVVQKFFEHGSTTQIKELSDQLIGRVLALSLQMYGCRVIQKAIEVVDL-AQQ 677
Query: 64 CKLLRYMNSHLL 75
K++ ++ H++
Sbjct: 678 TKMVGELDGHIM 689
Score = 32.7 bits (73), Expect = 2.4
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 8 PFGNYVVQKVLETCDDQSL-ELILSRIKVHLNALKRYTYGKHIVSRV 53
P+G V+Q+VLE CDD + ++++ I + L + YG ++V V
Sbjct: 731 PYGCRVIQRVLEHCDDPTTQQIMMDEILQSVCLLAQDQYGNYVVQHV 777
Score = 31.6 bits (70), Expect = 5.4
Identities = 14/49 (28%), Positives = 26/49 (52%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+V+QK +E ++ I+S + L + YG ++ RV
Sbjct: 692 VRDQNGNHVIQKCIECIPQDIIQFIVSTFYGQVVLLSTHPYGCRVIQRV 740
>dbj|BAD87365.1| putative pumilio domain-containing protein PPD1 [Oryza sativa
(japonica cultivar-group)]
Length = 894
Score = 97.4 bits (241), Expect = 8e-20
Identities = 44/60 (73%), Positives = 51/60 (84%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
++ MMKD F NYVVQKVLETCDDQ E+IL+RIK HLN LK+YTYGKHIV+RVEKL+ G
Sbjct: 823 LEVMMKDQFANYVVQKVLETCDDQQREMILTRIKAHLNTLKKYTYGKHIVARVEKLVAAG 882
Score = 32.7 bits (73), Expect = 2.4
Identities = 14/49 (28%), Positives = 27/49 (54%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+V+QK +E +++ I+S + L + YG ++ RV
Sbjct: 676 VRDQNGNHVIQKCIECIPQHAIQFIVSTFYGQVVMLSTHPYGCRVIQRV 724
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 8 PFGNYVVQKVLETCDD-QSLELILSRIKVHLNALKRYTYGKHIVSRV 53
P+G V+Q+VLE CDD ++ ++++ I + L YG ++V V
Sbjct: 715 PYGCRVIQRVLEHCDDPKTQQIMMDEILQSVCLLATDQYGNYVVQHV 761
Score = 32.0 bits (71), Expect = 4.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLI 57
+M D FGNYVVQK E ++ + ++ + AL YG ++ + +++
Sbjct: 603 LMTDVFGNYVVQKFFEHGSSAQIKELADQLIGRVLALSLQMYGCRVIQKAIEVV 656
>ref|XP_493876.1| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa]
gi|14719326|gb|AAK73144.1| putative pumilio/Mpt5 family
RNA-binding protein [Oryza sativa]
Length = 851
Score = 96.3 bits (238), Expect = 2e-19
Identities = 44/60 (73%), Positives = 50/60 (83%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
++ MMKD F NYVVQKVLETCDDQ E IL+RIK HLN LK+YTYGKHIV+RVEKL+ G
Sbjct: 778 LEVMMKDQFANYVVQKVLETCDDQQREAILTRIKAHLNTLKKYTYGKHIVARVEKLVAAG 837
Score = 33.1 bits (74), Expect = 1.8
Identities = 17/72 (23%), Positives = 37/72 (50%), Gaps = 1/72 (1%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+M D FGNYVVQK E ++ + ++ + AL YG ++ + +++ +
Sbjct: 558 LMTDVFGNYVVQKFFEHGSPTQIKELADQLIGRVLALSLQMYGCRVIQKAIEVVGL-DQQ 616
Query: 64 CKLLRYMNSHLL 75
K++ ++ H++
Sbjct: 617 TKMVAELDGHVM 628
Score = 32.7 bits (73), Expect = 2.4
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 8 PFGNYVVQKVLETCDDQSL-ELILSRIKVHLNALKRYTYGKHIVSRV 53
P+G V+Q+VLE CDD + ++++ I + L + YG ++V V
Sbjct: 670 PYGCRVIQRVLEHCDDPTTQQIMMDEILQSVCLLAQDQYGNYVVQHV 716
Score = 32.7 bits (73), Expect = 2.4
Identities = 14/49 (28%), Positives = 27/49 (54%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+V+QK +E +++ I+S + L + YG ++ RV
Sbjct: 631 VRDQNGNHVIQKCIECIPQHAIQFIVSTFYGQVVMLSTHPYGCRVIQRV 679
>gb|AAU44141.1| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa
(japonica cultivar-group)]
Length = 874
Score = 96.3 bits (238), Expect = 2e-19
Identities = 44/60 (73%), Positives = 50/60 (83%)
Query: 1 MQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTG 60
++ MMKD F NYVVQKVLETCDDQ E IL+RIK HLN LK+YTYGKHIV+RVEKL+ G
Sbjct: 633 LEVMMKDQFANYVVQKVLETCDDQQREAILTRIKAHLNTLKKYTYGKHIVARVEKLVAAG 692
Score = 33.1 bits (74), Expect = 1.8
Identities = 17/72 (23%), Positives = 37/72 (50%), Gaps = 1/72 (1%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+M D FGNYVVQK E ++ + ++ + AL YG ++ + +++ +
Sbjct: 413 LMTDVFGNYVVQKFFEHGSPTQIKELADQLIGRVLALSLQMYGCRVIQKAIEVVGL-DQQ 471
Query: 64 CKLLRYMNSHLL 75
K++ ++ H++
Sbjct: 472 TKMVAELDGHVM 483
Score = 32.7 bits (73), Expect = 2.4
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 8 PFGNYVVQKVLETCDDQSL-ELILSRIKVHLNALKRYTYGKHIVSRV 53
P+G V+Q+VLE CDD + ++++ I + L + YG ++V V
Sbjct: 525 PYGCRVIQRVLEHCDDPTTQQIMMDEILQSVCLLAQDQYGNYVVQHV 571
Score = 32.7 bits (73), Expect = 2.4
Identities = 14/49 (28%), Positives = 27/49 (54%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+V+QK +E +++ I+S + L + YG ++ RV
Sbjct: 486 VRDQNGNHVIQKCIECIPQHAIQFIVSTFYGQVVMLSTHPYGCRVIQRV 534
>ref|XP_483360.1| putative pumilio-family RNA-binding domain-containing protein(PPD1)
[Oryza sativa (japonica cultivar-group)]
gi|42409165|dbj|BAD10431.1| putative pumilio-family
RNA-binding domain-containing protein(PPD1) [Oryza sativa
(japonica cultivar-group)] gi|42408517|dbj|BAD09696.1|
putative pumilio-family RNA-binding domain-containing
protein(PPD1) [Oryza sativa (japonica cultivar-group)]
Length = 1006
Score = 88.6 bits (218), Expect = 4e-17
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGN 62
AMMKD + NYVVQK+LETC++Q EL+LSR+K HL AL++YTYGKHIVSRVE+L G
Sbjct: 943 AMMKDQYANYVVQKILETCNEQQRELLLSRVKGHLQALRKYTYGKHIVSRVEQLCGEGDT 1002
Query: 63 E 63
E
Sbjct: 1003 E 1003
Score = 33.1 bits (74), Expect = 1.8
Identities = 13/49 (26%), Positives = 28/49 (56%)
Query: 5 MKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
++D GN+V+QK +E + + ++S + + +L + YG ++ RV
Sbjct: 794 VRDQNGNHVIQKCIECVPTEHIGFVVSAFRGQVASLSMHPYGCRVIQRV 842
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/73 (21%), Positives = 39/73 (52%), Gaps = 1/73 (1%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGN 62
++M D FGNYV+QK E + + +++ H+ L YG ++ + +++
Sbjct: 720 SLMTDVFGNYVIQKFFEHGTPEQRRDLATKLVGHVLPLSLQMYGCRVIQKALEVMEL-DQ 778
Query: 63 ECKLLRYMNSHLL 75
+ +L+R ++ +++
Sbjct: 779 KIELVRELDGNIM 791
>dbj|BAB01884.1| RNA binding protein-like [Arabidopsis thaliana]
Length = 962
Score = 76.3 bits (186), Expect = 2e-13
Identities = 34/54 (62%), Positives = 44/54 (80%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKL 56
AMMKD F NYVVQKVLE DQ E+++ R+K+HL +L++YTYGKHIV+R E+L
Sbjct: 895 AMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVARFEQL 948
Score = 34.7 bits (78), Expect = 0.63
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+M D FGNYV+QK +E E ++ ++ + +L YG ++ + ++I +
Sbjct: 673 LMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDV-DQK 731
Query: 64 CKLLRYMNSHLL 75
+L+R ++ ++L
Sbjct: 732 TELIRELDGNVL 743
Score = 31.6 bits (70), Expect = 5.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 8 PFGNYVVQKVLETC-DDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
P+G V+Q++LE C DD+ I+ I AL YG ++ V
Sbjct: 785 PYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHV 831
>ref|NP_188660.3| pumilio/Puf RNA-binding domain-containing protein [Arabidopsis
thaliana]
Length = 961
Score = 76.3 bits (186), Expect = 2e-13
Identities = 34/54 (62%), Positives = 44/54 (80%)
Query: 3 AMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKL 56
AMMKD F NYVVQKVLE DQ E+++ R+K+HL +L++YTYGKHIV+R E+L
Sbjct: 894 AMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVARFEQL 947
Score = 34.7 bits (78), Expect = 0.63
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGGNE 63
+M D FGNYV+QK +E E ++ ++ + +L YG ++ + ++I +
Sbjct: 672 LMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDV-DQK 730
Query: 64 CKLLRYMNSHLL 75
+L+R ++ ++L
Sbjct: 731 TELIRELDGNVL 742
Score = 31.6 bits (70), Expect = 5.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 8 PFGNYVVQKVLETC-DDQSLELILSRIKVHLNALKRYTYGKHIVSRV 53
P+G V+Q++LE C DD+ I+ I AL YG ++ V
Sbjct: 784 PYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHV 830
>emb|CAB79443.1| pumilio-like protein [Arabidopsis thaliana]
gi|4539306|emb|CAB39609.1| pumilio-like protein
[Arabidopsis thaliana] gi|7484786|pir||T04242 abdominal
segment formation protein pumilio homolog F14M19.160 -
Arabidopsis thaliana
Length = 849
Score = 72.0 bits (175), Expect = 4e-12
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEK 55
MMKD +GNYVVQK+ ETC + SR+++H +ALK+YTYGKHIVSR+E+
Sbjct: 787 MMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIVSRLEQ 838
Score = 34.3 bits (77), Expect = 0.83
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 4 MMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGG 61
+ KD +GNYV Q VLE + E I ++ H+ L + + ++ +EK + GG
Sbjct: 709 LSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNV---IEKCLEYGG 763
Score = 33.1 bits (74), Expect = 1.8
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 1 MQAMMKDPFGNYVVQKVLETCD-DQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITT 59
+ ++ P+G V+Q++LE C D I I + L + YG ++ V + T+
Sbjct: 669 VSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTS 728
Query: 60 GGNECKLLRYMNSHLLSLNCSDFS 83
E ++ R ++ H++ L+ F+
Sbjct: 729 EERE-RIGRKLSGHIVQLSLHKFA 751
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,878,385
Number of Sequences: 2540612
Number of extensions: 3853822
Number of successful extensions: 10068
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9218
Number of HSP's gapped (non-prelim): 859
length of query: 83
length of database: 863,360,394
effective HSP length: 59
effective length of query: 24
effective length of database: 713,464,286
effective search space: 17123142864
effective search space used: 17123142864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144720.4