BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144720.3 + phase: 0 /pseudo
(949 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF02808.1| putative RNA binding protein [Arabidopsis thaliana] 275 7e-72
ref|NP_187647.2| pumilio/Puf RNA-binding domain-containing prote... 275 7e-72
dbj|BAC42549.1| putative RNA binding protein [Arabidopsis thalia... 273 2e-71
ref|NP_915465.1| putative pumilio/Mpt5 family RNA-binding protei... 267 1e-69
ref|XP_468426.1| pumilio-like [Oryza sativa (japonica cultivar-g... 261 6e-68
ref|XP_493876.1| putative pumilio/Mpt5 family RNA-binding protei... 254 7e-66
gb|AAU44141.1| putative pumilio/Mpt5 family RNA-binding protein ... 254 7e-66
dbj|BAD87365.1| putative pumilio domain-containing protein PPD1 ... 253 2e-65
ref|NP_914350.1| P0518C01.14 [Oryza sativa (japonica cultivar-gr... 252 4e-65
gb|AAM22812.1| BPM [Hordeum vulgare] 250 2e-64
gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein ... 249 2e-64
gb|AAC95216.1| putative pumilio/Mpt5 family RNA-binding protein ... 249 2e-64
gb|AAC95215.1| putative pumilio/Mpt5 family RNA-binding protein ... 248 7e-64
gb|AAC95220.1| putative pumilio/Mpt5 family RNA-binding protein ... 242 5e-62
ref|XP_483360.1| putative pumilio-family RNA-binding domain-cont... 211 7e-53
gb|AAF71823.1| pumilio domain-containing protein PPD1 [Populus t... 204 1e-50
gb|EAL85609.1| Pumilio 2 [Aspergillus fumigatus Af293] 164 2e-38
emb|CAB79443.1| pumilio-like protein [Arabidopsis thaliana] gi|4... 122 7e-26
gb|AAM91800.1| putative pumilio protein [Arabidopsis thaliana] g... 120 2e-25
ref|NP_974618.1| pumilio/Puf RNA-binding domain-containing prote... 118 8e-25
>gb|AAF02808.1| putative RNA binding protein [Arabidopsis thaliana]
Length = 1031
Score = 275 bits (702), Expect = 7e-72
Identities = 153/264 (57%), Positives = 179/264 (66%), Gaps = 19/264 (7%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETA+ EEK IFPEILP+ R LMTDVFGNYVIQKFFEHGT QRKELA Q
Sbjct: 677 YGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQ 736
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
+TGHVL LSLQMYGCRVIQK L ++ L G C ++
Sbjct: 737 VTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGS-----------VMKCVHDQN 785
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEE 856
+ C + + S ++ L S + + + DD++TQ IIMEE
Sbjct: 786 GNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEE 845
Query: 857 IMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAF 916
IM SVCTLAQDQYGNYVIQHI++HGKP+ER+ +I+KLAGQIVKMSQQKFASNV+EKCL F
Sbjct: 846 IMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTF 905
Query: 917 GSPEERQILVNEMLGTSDENEPLQ 940
G PEERQ+LVNEMLG +DENEPLQ
Sbjct: 906 GGPEERQVLVNEMLGYTDENEPLQ 929
Score = 261 bits (666), Expect = 1e-67
Identities = 190/491 (38%), Positives = 263/491 (52%), Gaps = 64/491 (13%)
Query: 16 NRTLEDTLQSELERILQEQRNQQFINRER--GYDIYRSGSAPPTVEGSLSAFGSL----R 69
N LED Q ELE +LQ+ RNQQ RER D++RSGSAPPTVEG L A +
Sbjct: 21 NVDLEDRFQRELESLLQQHRNQQSFGRERERDIDVHRSGSAPPTVEGLLRAMDNQYLNNN 80
Query: 70 NFDYR-ANNSGRSNNNDGV--LTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVA 126
N D+R N ++GV L++DE+R HP YLSYYYS+E NPRLPPPLLS+EDWRVA
Sbjct: 81 NSDHRDVGNISSITTSNGVELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVA 140
Query: 127 QRFQAGGGSSSIERFGDWRKNATSNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLPR 186
QRF S + G+WRK +SSSLFS+QPG V+QAENDLMELR A + R
Sbjct: 141 QRFH--NSESVFDPVGEWRKKTVEVDNSSSLFSVQPGVPVEQAENDLMELRNAVAQG--R 196
Query: 187 QSSTQLLDRHMDGMTRMPGTS-LGVRRTCYSDILQDGFDQ-PTLSSNMSRPASHNAFVDI 244
Q LD+ + + + G S LG RR ++DILQ+G ++ L S +SRPAS N F D+
Sbjct: 197 SQKVQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLERDAALGSQLSRPASCNTFRDM 256
Query: 245 RDSTGIVDREPLEGLRSSASTPGLVGLQNHGVNSHN--FSSVVGSSLSRSTTPESHVIGR 302
+D+ ++ G S + L + NS N S + S + R+ TP+SH++GR
Sbjct: 257 KDA-AVLSNFSAGGFDSPLAFHD--SLHSTAKNSPNTMLGSTMSSPVPRNRTPDSHLVGR 313
Query: 303 PVGSGVPQMGSKVFSAE---NIGLGNHNGHSSNMTDLADMVSSLSGLNLSGARRAEQDNL 359
SG+P +G++V E G N S D+AD +LS LN+S + ++N
Sbjct: 314 STASGLPPIGTRVGPVEKKNTFGTAIQNCESYTAADVAD---TLSRLNMSEMSQV-KENH 369
Query: 360 LKSKLQVEVDNHANVMLSTPNNVN--LPKHNELATDLNTFSLN----------------- 400
++S+LQVE++N ++VM PN L + N T + FS N
Sbjct: 370 MQSQLQVELENQSDVMRYIPNGHKKALRQQNTAETKDHLFSANYGGMSGYGASLGASTVG 429
Query: 401 --ERVNLLKKTASYANLRSNA-HS-------------TGNLTSIDFAGQVPSAYPANTTL 444
+VN+ K+T+S A+L S + HS GN+ DF+ Y A L
Sbjct: 430 SHGQVNIPKRTSSSASLYSTSDHSRLGSVGLSDVNIRNGNINGTDFS--TAGGYMAKNKL 487
Query: 445 NNVYNNHLETG 455
N++ ++ G
Sbjct: 488 NSLAEHYSAEG 498
Score = 52.4 bits (124), Expect = 7e-05
Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 53/243 (21%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ LE +E++ ++ E+ + D GN+VIQK E + +
Sbjct: 746 LQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFI 805
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G VL LS YGCRVIQ++L ++
Sbjct: 806 ISSFYGKVLALSTHPYGCRVIQRVLEHIDD------------------------------ 835
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTF----YSSLWVQSYSDCDDLKTQEIIMEEI 857
E R+ E + S CT Y + +Q + I+ ++
Sbjct: 836 ----IETQRIIMEE---------IMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKL 882
Query: 858 MQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIE 911
+ ++Q ++ + V++ L G P ER ++++++ G + M + F + V++
Sbjct: 883 AGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQ 942
Query: 912 KCL 914
K L
Sbjct: 943 KVL 945
Score = 41.6 bits (96), Expect = 0.13
Identities = 29/121 (23%), Positives = 48/121 (38%), Gaps = 36/121 (29%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYG------------------------------------N 871
KT+ + + EI+ V + DQYG N
Sbjct: 656 KTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGN 715
Query: 872 YVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLG 931
YVIQ EHG +R + ++ G ++ +S Q + VI+K L E++ +V E+ G
Sbjct: 716 YVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDG 775
Query: 932 T 932
+
Sbjct: 776 S 776
Score = 40.4 bits (93), Expect = 0.28
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L EE+ + E+L + +A+M D FGNYV+QK E D
Sbjct: 894 FASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSL 953
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKLLLNLLTG 772
+ +++ H+ L YG ++ ++ + TG
Sbjct: 954 ALILSRIKVHLNALKRYTYGKHIVARVEKLITTG 987
>ref|NP_187647.2| pumilio/Puf RNA-binding domain-containing protein [Arabidopsis
thaliana]
Length = 1003
Score = 275 bits (702), Expect = 7e-72
Identities = 153/264 (57%), Positives = 179/264 (66%), Gaps = 19/264 (7%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETA+ EEK IFPEILP+ R LMTDVFGNYVIQKFFEHGT QRKELA Q
Sbjct: 677 YGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQ 736
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
+TGHVL LSLQMYGCRVIQK L ++ L G C ++
Sbjct: 737 VTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGS-----------VMKCVHDQN 785
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEE 856
+ C + + S ++ L S + + + DD++TQ IIMEE
Sbjct: 786 GNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEE 845
Query: 857 IMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAF 916
IM SVCTLAQDQYGNYVIQHI++HGKP+ER+ +I+KLAGQIVKMSQQKFASNV+EKCL F
Sbjct: 846 IMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTF 905
Query: 917 GSPEERQILVNEMLGTSDENEPLQ 940
G PEERQ+LVNEMLG +DENEPLQ
Sbjct: 906 GGPEERQVLVNEMLGYTDENEPLQ 929
Score = 261 bits (666), Expect = 1e-67
Identities = 190/491 (38%), Positives = 263/491 (52%), Gaps = 64/491 (13%)
Query: 16 NRTLEDTLQSELERILQEQRNQQFINRER--GYDIYRSGSAPPTVEGSLSAFGSL----R 69
N LED Q ELE +LQ+ RNQQ RER D++RSGSAPPTVEG L A +
Sbjct: 21 NVDLEDRFQRELESLLQQHRNQQSFGRERERDIDVHRSGSAPPTVEGLLRAMDNQYLNNN 80
Query: 70 NFDYR-ANNSGRSNNNDGV--LTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVA 126
N D+R N ++GV L++DE+R HP YLSYYYS+E NPRLPPPLLS+EDWRVA
Sbjct: 81 NSDHRDVGNISSITTSNGVELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVA 140
Query: 127 QRFQAGGGSSSIERFGDWRKNATSNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLPR 186
QRF S + G+WRK +SSSLFS+QPG V+QAENDLMELR A + R
Sbjct: 141 QRFH--NSESVFDPVGEWRKKTVEVDNSSSLFSVQPGVPVEQAENDLMELRNAVAQG--R 196
Query: 187 QSSTQLLDRHMDGMTRMPGTS-LGVRRTCYSDILQDGFDQ-PTLSSNMSRPASHNAFVDI 244
Q LD+ + + + G S LG RR ++DILQ+G ++ L S +SRPAS N F D+
Sbjct: 197 SQKVQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLERDAALGSQLSRPASCNTFRDM 256
Query: 245 RDSTGIVDREPLEGLRSSASTPGLVGLQNHGVNSHN--FSSVVGSSLSRSTTPESHVIGR 302
+D+ ++ G S + L + NS N S + S + R+ TP+SH++GR
Sbjct: 257 KDA-AVLSNFSAGGFDSPLAFHD--SLHSTAKNSPNTMLGSTMSSPVPRNRTPDSHLVGR 313
Query: 303 PVGSGVPQMGSKVFSAE---NIGLGNHNGHSSNMTDLADMVSSLSGLNLSGARRAEQDNL 359
SG+P +G++V E G N S D+AD +LS LN+S + ++N
Sbjct: 314 STASGLPPIGTRVGPVEKKNTFGTAIQNCESYTAADVAD---TLSRLNMSEMSQV-KENH 369
Query: 360 LKSKLQVEVDNHANVMLSTPNNVN--LPKHNELATDLNTFSLN----------------- 400
++S+LQVE++N ++VM PN L + N T + FS N
Sbjct: 370 MQSQLQVELENQSDVMRYIPNGHKKALRQQNTAETKDHLFSANYGGMSGYGASLGASTVG 429
Query: 401 --ERVNLLKKTASYANLRSNA-HS-------------TGNLTSIDFAGQVPSAYPANTTL 444
+VN+ K+T+S A+L S + HS GN+ DF+ Y A L
Sbjct: 430 SHGQVNIPKRTSSSASLYSTSDHSRLGSVGLSDVNIRNGNINGTDFS--TAGGYMAKNKL 487
Query: 445 NNVYNNHLETG 455
N++ ++ G
Sbjct: 488 NSLAEHYSAEG 498
Score = 53.1 bits (126), Expect = 4e-05
Identities = 51/265 (19%), Positives = 117/265 (43%), Gaps = 23/265 (8%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ LE +E++ ++ E+ + D GN+VIQK E + +
Sbjct: 746 LQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFI 805
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G VL LS YGCRVIQ++L ++ E + + + +CT +
Sbjct: 806 ISSFYGKVLALSTHPYGCRVIQRVLEHI---------DDIETQRIIMEEIMDSVCTLAQD 856
Query: 802 KPCYSEVYRVC----PSE*NSVYHHV---FLWASCCTFYSSLWVQSYSDCDDLKTQEIIM 854
+ + + P E + + + + + S F S++ V+ + +++++
Sbjct: 857 QYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNV-VEKCLTFGGPEERQVLV 915
Query: 855 EEIM------QSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASN 908
E++ + + + +D +GNYV+Q +LE +++S++ + + + + +
Sbjct: 916 NEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKH 975
Query: 909 VIEKCLAFGSPEERQILVNEMLGTS 933
++ + + ER+I ++ L +
Sbjct: 976 IVARVEKLITTGERRIGLSSSLAAN 1000
Score = 41.6 bits (96), Expect = 0.13
Identities = 29/121 (23%), Positives = 48/121 (38%), Gaps = 36/121 (29%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYG------------------------------------N 871
KT+ + + EI+ V + DQYG N
Sbjct: 656 KTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGN 715
Query: 872 YVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLG 931
YVIQ EHG +R + ++ G ++ +S Q + VI+K L E++ +V E+ G
Sbjct: 716 YVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDG 775
Query: 932 T 932
+
Sbjct: 776 S 776
>dbj|BAC42549.1| putative RNA binding protein [Arabidopsis thaliana]
gi|28950903|gb|AAO63375.1| At3g10360 [Arabidopsis
thaliana]
Length = 330
Score = 273 bits (698), Expect = 2e-71
Identities = 152/264 (57%), Positives = 179/264 (67%), Gaps = 19/264 (7%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKL+TA+ EEK IFPEILP+ R LMTDVFGNYVIQKFFEHGT QRKELA Q
Sbjct: 4 YGSRFIQQKLKTATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQ 63
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
+TGHVL LSLQMYGCRVIQK L ++ L G C ++
Sbjct: 64 VTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGS-----------VMKCVHDQN 112
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEE 856
+ C + + S ++ L S + + + DD++TQ IIMEE
Sbjct: 113 GNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEE 172
Query: 857 IMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAF 916
IM SVCTLAQDQYGNYVIQHI++HGKP+ER+ +I+KLAGQIVKMSQQKFASNV+EKCL F
Sbjct: 173 IMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTF 232
Query: 917 GSPEERQILVNEMLGTSDENEPLQ 940
G PEERQ+LVNEMLG +DENEPLQ
Sbjct: 233 GGPEERQVLVNEMLGYTDENEPLQ 256
Score = 53.1 bits (126), Expect = 4e-05
Identities = 51/265 (19%), Positives = 117/265 (43%), Gaps = 23/265 (8%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ LE +E++ ++ E+ + D GN+VIQK E + +
Sbjct: 73 LQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFI 132
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G VL LS YGCRVIQ++L ++ E + + + +CT +
Sbjct: 133 ISSFYGKVLALSTHPYGCRVIQRVLEHI---------DDIETQRIIMEEIMDSVCTLAQD 183
Query: 802 KPCYSEVYRVC----PSE*NSVYHHV---FLWASCCTFYSSLWVQSYSDCDDLKTQEIIM 854
+ + + P E + + + + + S F S++ V+ + +++++
Sbjct: 184 QYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNV-VEKCLTFGGPEERQVLV 242
Query: 855 EEIM------QSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASN 908
E++ + + + +D +GNYV+Q +LE +++S++ + + + + +
Sbjct: 243 NEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKH 302
Query: 909 VIEKCLAFGSPEERQILVNEMLGTS 933
++ + + ER+I ++ L +
Sbjct: 303 IVARVEKLITTGERRIGLSSSLAAN 327
>ref|NP_915465.1| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa
(japonica cultivar-group)] gi|20160612|dbj|BAB89558.1|
putative pumilio domain-containing protein PPD1 [Oryza
sativa (japonica cultivar-group)]
Length = 1048
Score = 267 bits (682), Expect = 1e-69
Identities = 146/264 (55%), Positives = 185/264 (69%), Gaps = 19/264 (7%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETA+VEEK +F EI+P A +LMTDVFGNYV+QKFFEHG+ +QR+ELA+Q
Sbjct: 726 YGSRFIQQKLETATVEEKDMVFKEIMPQALSLMTDVFGNYVVQKFFEHGSAAQRRELADQ 785
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
L GHVL LSLQMYGCRVIQK + ++T L G VR Q N+ +
Sbjct: 786 LFGHVLALSLQMYGCRVIQKAIEVVDLDQKTKMVTELDGHIM-----RCVRDQNGNHVIQ 840
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEE 856
+ P S + + S ++ + S + + + C D KTQEI+M+E
Sbjct: 841 KCIECVPEDSIQFII------STFYGQVVPLSTHPYGCRVIQRVLEHCTDPKTQEIVMDE 894
Query: 857 IMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAF 916
I+QSVC LAQDQYGNYV+QH+LEHGKP+ER+++I KLAGQI++MSQQKFASNV+EKCL F
Sbjct: 895 ILQSVCMLAQDQYGNYVVQHVLEHGKPHERSVIIEKLAGQIIQMSQQKFASNVVEKCLTF 954
Query: 917 GSPEERQILVNEMLGTSDENEPLQ 940
G P ER++L+NEMLGT+DENEPLQ
Sbjct: 955 GGPAEREVLINEMLGTTDENEPLQ 978
Score = 180 bits (457), Expect = 2e-43
Identities = 140/437 (32%), Positives = 225/437 (51%), Gaps = 53/437 (12%)
Query: 20 EDTLQSELERIL------QEQRNQQFINRERGYDIYRSGSAPPTVEGSLSAFGSLRNFDY 73
E L+ EL+ +L +R + RER +++RSGSAPPT+EGSL+A L
Sbjct: 10 EGELEDELDALLGTGGAGARRRGEDAGERERELNMFRSGSAPPTIEGSLNAISGLLRGGG 69
Query: 74 RAN-------NSGRSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVA 126
A ++ N + G+L+EDE+R+ PAYLSYYYSH ++NPRLPPP+LSKEDWR
Sbjct: 70 EAAVTVAAIPDAETLNGHGGLLSEDELRADPAYLSYYYSHGNLNPRLPPPVLSKEDWRST 129
Query: 127 QRFQAGGGSSSIERFGDWRK-NATSNGDSSS----LFSMQPGFSVQQ-AENDLMELRKAS 180
QR +AG + GD RK + G + +FS GF ++ A ND+
Sbjct: 130 QRLKAG----VVGGIGDGRKVSPEETGHEPTVGRPVFSQNVGFDQEEAARNDV------- 178
Query: 181 GRNLPRQSSTQLLDRHMDGMTRMPGTSLGVRRTCYSDILQDGFDQPT-LSSNMSRPASHN 239
+ + +D DG+ G SLG R+ ++DILQD + T S + SR S N
Sbjct: 179 ------GGAAEWVDGGGDGLI---GLSLG-RQRSFADILQDNIGRRTPASEHPSRAVSRN 228
Query: 240 AFVDIR------DSTGIVDREPLEGLRSSASTPGLVGLQNHGVN-SHNFSSVVGSSLSRS 292
+F+D + DS + + LE R+ + + GL + + S F+SV+GSS+SR+
Sbjct: 229 SFLDNQELLNSADSQYSMHNDILEAQRAVGNVQNVSGLPSINASASQTFASVLGSSISRN 288
Query: 293 TTPESHVIGRPVGSGVPQMGSKVFSAEN--IGLGNHNGHSSNMTDLADMVSSLSGLNLS- 349
TP+SH + R G+P +G ++ S E + N SS + D+++++S +N+S
Sbjct: 289 ATPDSHYVPRVPSPGLPPVGVRINSNEKKLNCSSSFNTASSKAVEPDDILAAISNMNMSK 348
Query: 350 GARRAEQDNLLKSKLQVEVDNHANVMLSTPNNVNLPKH-NELATDLNTFSLNERVNLLKK 408
+ +++ +SK Q E+ +H N+ L P + + K+ + L + +T L
Sbjct: 349 DGTLGDSNSISQSKFQSEISDHQNISLD-PKALQVNKNQHSLMLEADTDYLGIPPISQPS 407
Query: 409 TASYANLRSNAHSTGNL 425
S++++ N N+
Sbjct: 408 NPSFSDINKNVSGLANI 424
Score = 75.5 bits (184), Expect = 8e-12
Identities = 61/276 (22%), Positives = 119/276 (43%), Gaps = 46/276 (16%)
Query: 661 HPCSMSSRTTKPNLLNFQISL-IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTD 719
H + R L ++L + Y IQ+ +E +++KTK+ E+ H + D
Sbjct: 773 HGSAAQRRELADQLFGHVLALSLQMYGCRVIQKAIEVVDLDQKTKMVTELDGHIMRCVRD 832
Query: 720 VFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C* 779
GN+VIQK E + + + + G V+PLS YGCRVIQ++L
Sbjct: 833 QNGNHVIQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCRVIQRVL------------- 879
Query: 780 SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQ 839
E CT PK + + + V + A Y + VQ
Sbjct: 880 --------------EHCTDPKTQEIVMD----------EILQSVCMLAQ--DQYGNYVVQ 913
Query: 840 SYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG---- 895
+ + +I+E++ + ++Q ++ + V++ L G P ER ++I+++ G
Sbjct: 914 HVLEHGKPHERSVIIEKLAGQIIQMSQQKFASNVVEKCLTFGGPAEREVLINEMLGTTDE 973
Query: 896 --QIVKMSQQKFASNVIEKCLAFGSPEERQILVNEM 929
+ M + +F + V++K L ++R+++++ +
Sbjct: 974 NEPLQAMMKDQFGNYVVQKVLETCDDQQRELILSRV 1009
Score = 40.8 bits (94), Expect = 0.21
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L E+ + E+L +A+M D FGNYV+QK E D QR
Sbjct: 943 FASNVVEKCLTFGGPAEREVLINEMLGTTDENEPLQAMMKDQFGNYVVQKVLETCDDQQR 1002
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + +++ H+ L YG ++ ++
Sbjct: 1003 ELILSRVKVHLSALKKYTYGKHIVARV 1029
>ref|XP_468426.1| pumilio-like [Oryza sativa (japonica cultivar-group)]
gi|48716356|dbj|BAD22967.1| pumilio-like [Oryza sativa
(japonica cultivar-group)]
Length = 1001
Score = 261 bits (668), Expect = 6e-68
Identities = 150/257 (58%), Positives = 177/257 (68%), Gaps = 5/257 (1%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETAS EEK IFPEILP AR LMTDVFGNYVIQKFFE+GT+ Q+K+LA+
Sbjct: 680 YGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGNYVIQKFFEYGTEPQKKQLASL 739
Query: 745 LTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPC 804
L G+VL LSLQMYGCRVIQK L + + N ++ N K C
Sbjct: 740 LKGYVLQLSLQMYGCRVIQKALEMVEVEQQTQMALELDGNIMKCVRDQNGNHVIQKCIEC 799
Query: 805 Y-SEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSVCT 863
E R S + Y HV + S + + + C+D TQ +MEEIMQSV
Sbjct: 800 IPQERIRFIIS---AFYGHV-VELSTHPYGCRVIQRVLEHCNDENTQSTMMEEIMQSVVL 855
Query: 864 LAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQ 923
L DQYGNYVIQH+L+HGKP+ER+ +I +LAGQIVKMSQQKFASNV+EKCL+FGSPEERQ
Sbjct: 856 LTLDQYGNYVIQHVLQHGKPDERSAIIKQLAGQIVKMSQQKFASNVVEKCLSFGSPEERQ 915
Query: 924 ILVNEMLGTSDENEPLQ 940
IL+NEMLGT+DENEPLQ
Sbjct: 916 ILINEMLGTTDENEPLQ 932
Score = 223 bits (569), Expect = 2e-56
Identities = 165/462 (35%), Positives = 254/462 (54%), Gaps = 31/462 (6%)
Query: 18 TLEDTLQSELERILQEQRNQQFINRERGYDIYRSGSAPPTVEGSLSAFGSLRNFDYRANN 77
T ED L+ +L+ +L +Q + + ++RSGSAPPTV+G+ +A GSL + +
Sbjct: 12 TFED-LERDLQAVLMDQNHSATADE---LSMFRSGSAPPTVQGARTAVGSLFSAAPVHVD 67
Query: 78 SGRSNNNDGV---LTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGGG 134
S +N GV L+++EIRSHPAYLSYYYS+E +NPRLPPP++SKEDWRVAQR QA G
Sbjct: 68 SFVDPSNGGVGDVLSDEEIRSHPAYLSYYYSNEHLNPRLPPPMVSKEDWRVAQRVQAVSG 127
Query: 135 SSSIERFGDWRKNATSNGDSSSLFSMQPGFSVQQAENDLMELRKASG--RNLPRQSSTQL 192
GD R+ + G SSLFS+QPG E+ L+ R G L RQ S++
Sbjct: 128 G-----VGDRRRRPSDVGGGSSLFSVQPGARHGNGEDLLVNDRMGGGERNGLTRQQSSEW 182
Query: 193 LDRHMDGMTRMPGTS-LGVRRTCYSDILQDGFDQP-TLSSNMSRPASHNAFVD---IRDS 247
L DG+ + +S LG RR ++D LQ+ +P + +S++SR S NAF IR
Sbjct: 183 LGSGADGLIGLSDSSGLGSRRKSFADALQENISRPASAASHLSRSNSRNAFDSPNPIRPD 242
Query: 248 TGIVD----REPLEGLRSSASTPGLVGLQNHGVN-SHNFSSVVGSSLSRSTTPESHVIGR 302
+ E + GLRS +++P LV +Q+ G + SHNF+S VGSS+SRSTTP+ +I R
Sbjct: 243 SSRAQLQSRSESMNGLRSGSTSPSLVRVQSLGSSISHNFASAVGSSISRSTTPDPQLIRR 302
Query: 303 PVGSGVPQMGSKVFSAENIGLGNHNGHSSNMTDLADMVSSLSGLNLSGARRAEQDNLLKS 362
+P +G ++ S + G + +S+ D AD+ ++LS +NLSG++ A + +++
Sbjct: 303 TPSPCLPPVGVRMGSTDKKVDG--SAVASHNHDTADIAAALSSMNLSGSKMASLEAEVQN 360
Query: 363 KLQVEVDNHANVMLSTPNNVNLPKHNELATDLNTFSLNERVNLLKKTASYANLRSNAHST 422
+ + +V+ S P +LA + + E +N L+ A + +S
Sbjct: 361 RAYQNFGDQTDVLFSVPKERRQLSQQKLAQNAD----EESINALEYAAFPNGSGNFNNSN 416
Query: 423 GNLTSIDFAGQVPSAYPANTTLNNVYNNHLETGLLSLSLSLS 464
+ S+D + P P + NN + TG +SL +L+
Sbjct: 417 MSKLSVDSRSKFPIQSP-HGNANNKGSLVSPTGSVSLYQNLN 457
Score = 68.9 bits (167), Expect = 7e-10
Identities = 58/258 (22%), Positives = 112/258 (42%), Gaps = 46/258 (17%)
Query: 678 QISLIMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQ 737
Q+SL M Y IQ+ LE VE++T++ E+ + + D GN+VIQK E +
Sbjct: 746 QLSLQM-YGCRVIQKALEMVEVEQQTQMALELDGNIMKCVRDQNGNHVIQKCIECIPQER 804
Query: 738 RKELANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT 797
+ + + GHV+ LS YGCRVIQ++L + CN+E
Sbjct: 805 IRFIISAFYGHVVELSTHPYGCRVIQRVL----------------------EHCNDENTQ 842
Query: 798 *PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEI 857
+ V + + Y + +Q + I++++
Sbjct: 843 STMMEEIMQSVVLLTLDQ-----------------YGNYVIQHVLQHGKPDERSAIIKQL 885
Query: 858 MQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIE 911
+ ++Q ++ + V++ L G P ER I+I+++ G + M + +FA+ V++
Sbjct: 886 AGQIVKMSQQKFASNVVEKCLSFGSPEERQILINEMLGTTDENEPLQAMMKDQFANYVVQ 945
Query: 912 KCLAFGSPEERQILVNEM 929
K L + R+++++ +
Sbjct: 946 KVLETCDDQNRELILSRI 963
Score = 40.4 bits (93), Expect = 0.28
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L S EE+ + E+L +A+M D F NYV+QK E D R
Sbjct: 897 FASNVVEKCLSFGSPEERQILINEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQNR 956
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + +++ H+ L YG ++ ++
Sbjct: 957 ELILSRIKVHLNALKRYTYGKHIVARV 983
Score = 38.5 bits (88), Expect = 1.1
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
KT+ + +I+ V + DQYG+ IQ LE E+ + ++ Q + F +
Sbjct: 659 KTRSFELLDIVGHVVEFSSDQYGSRFIQQKLETASAEEKDTIFPEILPQARTLMTDVFGN 718
Query: 908 NVIEKCLAFGSPEERQILVNEMLG 931
VI+K +G+ +++ L + + G
Sbjct: 719 YVIQKFFEYGTEPQKKQLASLLKG 742
>ref|XP_493876.1| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa]
gi|14719326|gb|AAK73144.1| putative pumilio/Mpt5 family
RNA-binding protein [Oryza sativa]
Length = 851
Score = 254 bits (650), Expect = 7e-66
Identities = 145/262 (55%), Positives = 184/262 (69%), Gaps = 13/262 (4%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETAS EEK +F EI+P A LMTDVFGNYV+QKFFEHG+ +Q KELA+Q
Sbjct: 527 YGSRFIQQKLETASTEEKDMVFSEIMPQALTLMTDVFGNYVVQKFFEHGSPTQIKELADQ 586
Query: 745 LTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNG-----VRAQWCNNEMCT*P 799
L G VL LSLQMYGCRVIQK + + GL AE +G VR Q N+ +
Sbjct: 587 LIGRVLALSLQMYGCRVIQKAIE--VVGLDQQTKMVAELDGHVMRCVRDQNGNHVIQKCI 644
Query: 800 KWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQ 859
+ P ++ + V S ++ + S + + + CDD TQ+I+M+EI+Q
Sbjct: 645 ECIPQHAIQFIV------STFYGQVVMLSTHPYGCRVIQRVLEHCDDPTTQQIMMDEILQ 698
Query: 860 SVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSP 919
SVC LAQDQYGNYV+QH+LEHGKP+ER+ +I KL GQIV+MSQQKFASNVIEKCLAFG+P
Sbjct: 699 SVCLLAQDQYGNYVVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLAFGNP 758
Query: 920 EERQILVNEMLGTSDENEPLQV 941
ERQIL++EMLG+++E+E L+V
Sbjct: 759 VERQILISEMLGSTNESEHLEV 780
Score = 124 bits (311), Expect = 1e-26
Identities = 96/332 (28%), Positives = 153/332 (45%), Gaps = 91/332 (27%)
Query: 43 ERGYDIYRSGSAPPTVEGSLSAFGSLRNFDYRANNSGRSNNNDGVLTEDEIRSHPAYLSY 102
+R +++RSGSAPPTVEG++++ + V +DE+R+ P Y SY
Sbjct: 14 DRDMELFRSGSAPPTVEGAMASAAAAAG---------------DVFLDDELRADPVYQSY 58
Query: 103 YYSHESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIERFGDWRKNATSNGDSSSLFSMQP 162
YYS+ +NPRLPPPLLSKEDWR AQ SS++ GD R+ QP
Sbjct: 59 YYSNAHLNPRLPPPLLSKEDWRSAQHRLR---SSALGGIGDGRR--------------QP 101
Query: 163 GFSVQQAENDLMELRKASGRNLPRQSSTQLLDRHMDGMTRMPGTSLGVRRTCYSDILQDG 222
+ Q DG+ +PG L R+ +S I Q
Sbjct: 102 AAAAQG-----------------------------DGLVGLPGIDLD-RQGSFSSIFQYA 131
Query: 223 FDQPTLSSNMSRPASHNAFVDIRDSTGIVDREPLEGLRSSASTPGLVGLQNHGVNSHNFS 282
+ T + GL+S ++ L +QN+ ++H ++
Sbjct: 132 LHRET-------------------------SRAMGGLQSDSNIQSLAEVQNNDSSAHTYA 166
Query: 283 SVVGSSLSRSTTPESHVIGRPVGSGVPQMGSKVFSAE---NIGLGNHNGHSSNMTDLADM 339
S++GSSLSRS +P+ ++ R +P +G KV + + N G + SS + + ++
Sbjct: 167 SLLGSSLSRSASPDPELVRRVPSPCLPPIGVKVSADDKKNNGGSSSFRRSSSAIGESDNL 226
Query: 340 VSSLSGLNLSGARRAE-QDNLLKSKLQVEVDN 370
+++LSG+NLS + A Q + +S+L +VDN
Sbjct: 227 IAALSGMNLSSSGAASGQQTVTQSELYQDVDN 258
Score = 66.6 bits (161), Expect = 4e-09
Identities = 58/254 (22%), Positives = 107/254 (41%), Gaps = 45/254 (17%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E ++++TK+ E+ H + D GN+VIQK E + +
Sbjct: 596 LQMYGCRVIQKAIEVVGLDQQTKMVAELDGHVMRCVRDQNGNHVIQKCIECIPQHAIQFI 655
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G V+ LS YGCRVIQ++L E C P
Sbjct: 656 VSTFYGQVVMLSTHPYGCRVIQRVL---------------------------EHCDDPTT 688
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ + + V L A Y + VQ + + I+E+++ +
Sbjct: 689 QQIMMD----------EILQSVCLLAQ--DQYGNYVVQHVLEHGKPHERSAIIEKLIGQI 736
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
++Q ++ + VI+ L G P ER I+IS++ G + M + +FA+ V++K L
Sbjct: 737 VQMSQQKFASNVIEKCLAFGNPVERQILISEMLGSTNESEHLEVMMKDQFANYVVQKVLE 796
Query: 916 FGSPEERQILVNEM 929
++R+ ++ +
Sbjct: 797 TCDDQQREAILTRI 810
Score = 42.4 bits (98), Expect = 0.074
Identities = 23/87 (26%), Positives = 42/87 (47%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEIL------PHARALMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ L + E+ + E+L H +M D F NYV+QK E D QR
Sbjct: 744 FASNVIEKCLAFGNPVERQILISEMLGSTNESEHLEVMMKDQFANYVVQKVLETCDDQQR 803
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG ++ ++
Sbjct: 804 EAILTRIKAHLNTLKKYTYGKHIVARV 830
>gb|AAU44141.1| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa
(japonica cultivar-group)]
Length = 874
Score = 254 bits (650), Expect = 7e-66
Identities = 145/262 (55%), Positives = 184/262 (69%), Gaps = 13/262 (4%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETAS EEK +F EI+P A LMTDVFGNYV+QKFFEHG+ +Q KELA+Q
Sbjct: 382 YGSRFIQQKLETASTEEKDMVFSEIMPQALTLMTDVFGNYVVQKFFEHGSPTQIKELADQ 441
Query: 745 LTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNG-----VRAQWCNNEMCT*P 799
L G VL LSLQMYGCRVIQK + + GL AE +G VR Q N+ +
Sbjct: 442 LIGRVLALSLQMYGCRVIQKAIE--VVGLDQQTKMVAELDGHVMRCVRDQNGNHVIQKCI 499
Query: 800 KWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQ 859
+ P ++ + V S ++ + S + + + CDD TQ+I+M+EI+Q
Sbjct: 500 ECIPQHAIQFIV------STFYGQVVMLSTHPYGCRVIQRVLEHCDDPTTQQIMMDEILQ 553
Query: 860 SVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSP 919
SVC LAQDQYGNYV+QH+LEHGKP+ER+ +I KL GQIV+MSQQKFASNVIEKCLAFG+P
Sbjct: 554 SVCLLAQDQYGNYVVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLAFGNP 613
Query: 920 EERQILVNEMLGTSDENEPLQV 941
ERQIL++EMLG+++E+E L+V
Sbjct: 614 VERQILISEMLGSTNESEHLEV 635
Score = 66.6 bits (161), Expect = 4e-09
Identities = 58/254 (22%), Positives = 107/254 (41%), Gaps = 45/254 (17%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E ++++TK+ E+ H + D GN+VIQK E + +
Sbjct: 451 LQMYGCRVIQKAIEVVGLDQQTKMVAELDGHVMRCVRDQNGNHVIQKCIECIPQHAIQFI 510
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G V+ LS YGCRVIQ++L E C P
Sbjct: 511 VSTFYGQVVMLSTHPYGCRVIQRVL---------------------------EHCDDPTT 543
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ + + V L A Y + VQ + + I+E+++ +
Sbjct: 544 QQIMMD----------EILQSVCLLAQ--DQYGNYVVQHVLEHGKPHERSAIIEKLIGQI 591
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
++Q ++ + VI+ L G P ER I+IS++ G + M + +FA+ V++K L
Sbjct: 592 VQMSQQKFASNVIEKCLAFGNPVERQILISEMLGSTNESEHLEVMMKDQFANYVVQKVLE 651
Query: 916 FGSPEERQILVNEM 929
++R+ ++ +
Sbjct: 652 TCDDQQREAILTRI 665
Score = 44.3 bits (103), Expect = 0.019
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 287 SSLSRSTTPESHVIGRPVGSGVPQMGSKVFSAE---NIGLGNHNGHSSNMTDLADMVSSL 343
SSLSRS +P+ ++ R +P +G KV + + N G + SS + + +++++L
Sbjct: 26 SSLSRSASPDPELVRRVPSPCLPPIGVKVSADDKKNNGGSSSFRRSSSAIGESDNLIAAL 85
Query: 344 SGLNLSGARRAE-QDNLLKSKLQVEVDN 370
SG+NLS + A Q + +S+L +VDN
Sbjct: 86 SGMNLSSSGAASGQQTVTQSELYQDVDN 113
Score = 42.4 bits (98), Expect = 0.074
Identities = 23/87 (26%), Positives = 42/87 (47%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEIL------PHARALMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ L + E+ + E+L H +M D F NYV+QK E D QR
Sbjct: 599 FASNVIEKCLAFGNPVERQILISEMLGSTNESEHLEVMMKDQFANYVVQKVLETCDDQQR 658
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG ++ ++
Sbjct: 659 EAILTRIKAHLNTLKKYTYGKHIVARV 685
>dbj|BAD87365.1| putative pumilio domain-containing protein PPD1 [Oryza sativa
(japonica cultivar-group)]
Length = 894
Score = 253 bits (647), Expect = 2e-65
Identities = 145/266 (54%), Positives = 184/266 (68%), Gaps = 21/266 (7%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETAS EEK +F EI+P A LMTDVFGNYV+QKFFEHG+ +Q KELA+Q
Sbjct: 572 YGSRFIQQKLETASTEEKDMVFAEIMPQALTLMTDVFGNYVVQKFFEHGSSAQIKELADQ 631
Query: 745 LTGHVLPLSLQMYGCRVIQKLL----LNLLTGLGGG*C*SAEPNG-----VRAQWCNNEM 795
L G VL LSLQMYGCRVIQK + L+ T + AE +G VR Q N+ +
Sbjct: 632 LIGRVLALSLQMYGCRVIQKAIEVVDLDQQTKM------VAELDGQVMRCVRDQNGNHVI 685
Query: 796 CT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIME 855
+ P ++ + V S ++ + S + + + CDD KTQ+I+M+
Sbjct: 686 QKCIECIPQHAIQFIV------STFYGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIMMD 739
Query: 856 EIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLA 915
EI+QSVC LA DQYGNYV+QH+LEHGKP+ER+ +I KL GQIV+MSQQKFASNVIEKCLA
Sbjct: 740 EILQSVCLLATDQYGNYVVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLA 799
Query: 916 FGSPEERQILVNEMLGTSDENEPLQV 941
FG+P ERQ+L+ EMLG+S+E+E L+V
Sbjct: 800 FGNPVERQVLIGEMLGSSNESEHLEV 825
Score = 164 bits (416), Expect = 1e-38
Identities = 121/361 (33%), Positives = 179/361 (49%), Gaps = 70/361 (19%)
Query: 20 EDTLQSELERILQEQRNQQFINRERGYDIYRSGSAPPTVEGSLSAFGSLRNFDYRANNSG 79
E ++ E R + ++ Q +RER D++RSGSAPPTVEGS+ A + D
Sbjct: 4 EMAMRGEPWRRQEGEQAQAEADRERELDLFRSGSAPPTVEGSMGALHAAAAAD------- 56
Query: 80 RSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIE 139
V EDE+R+ PAY SYYYS+ +INPRLPPPLLSKEDWR AQR + G G
Sbjct: 57 -------VFLEDELRADPAYHSYYYSNGNINPRLPPPLLSKEDWRSAQRLRPGLGG---- 105
Query: 140 RFGDWRKNATSNG--DSSSLFSMQPGFSVQQAENDLMELRKASGRNLPRQSSTQLLDRHM 197
GD RK G M PG
Sbjct: 106 -IGDGRKPRGGGGGRGGGGAGGMGPG---------------------------------- 130
Query: 198 DGMTRMPGTSLGVRRTCYSDILQDGFDQPTLSSNMSRPASHNAFVDIRDSTGI---VDRE 254
DG+ MPG +G R+ +S I QD + + R ++ D+ S+ + + RE
Sbjct: 131 DGLIGMPGLEIG-RQNSFSGIFQD----DSYQHDTDRQGANCNGTDLLSSSKVQYGLHRE 185
Query: 255 --PLEGLRSSASTPGLVGLQNHGVNSHNFSSVVGSSLSRSTTPESHVIGRPVGSGVPQMG 312
+ GL S + P L +N +SH+++S++GSSLSRS +P+ ++ R +P +G
Sbjct: 186 TGAISGLHSDSKAPCLP--ENQNESSHSYASIIGSSLSRSASPDPELVRRVPSPCLPPIG 243
Query: 313 SKVFSAE---NIGLGNHNGHSSNMTDLADMVSSLSGLNLSGARRAEQDNLLKSKLQVEVD 369
K+ + + N+G + N S N+ + D+VS+LSG+NLS +R + + +SKL +VD
Sbjct: 244 VKLGATDKKNNVGSSSFNCSSPNIIESDDLVSALSGMNLSSSRAMNGNTMDQSKLHQDVD 303
Query: 370 N 370
+
Sbjct: 304 D 304
Score = 65.1 bits (157), Expect = 1e-08
Identities = 56/254 (22%), Positives = 108/254 (42%), Gaps = 45/254 (17%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E ++++TK+ E+ + D GN+VIQK E + +
Sbjct: 641 LQMYGCRVIQKAIEVVDLDQQTKMVAELDGQVMRCVRDQNGNHVIQKCIECIPQHAIQFI 700
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G V+ LS YGCRVIQ++L E C PK
Sbjct: 701 VSTFYGQVVMLSTHPYGCRVIQRVL---------------------------EHCDDPKT 733
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ + + V L A+ Y + VQ + + I+E+++ +
Sbjct: 734 QQIMMD----------EILQSVCLLAT--DQYGNYVVQHVLEHGKPHERSAIIEKLIGQI 781
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
++Q ++ + VI+ L G P ER ++I ++ G + M + +FA+ V++K L
Sbjct: 782 VQMSQQKFASNVIEKCLAFGNPVERQVLIGEMLGSSNESEHLEVMMKDQFANYVVQKVLE 841
Query: 916 FGSPEERQILVNEM 929
++R++++ +
Sbjct: 842 TCDDQQREMILTRI 855
Score = 42.0 bits (97), Expect = 0.096
Identities = 23/87 (26%), Positives = 42/87 (47%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEIL------PHARALMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ L + E+ + E+L H +M D F NYV+QK E D QR
Sbjct: 789 FASNVIEKCLAFGNPVERQVLIGEMLGSSNESEHLEVMMKDQFANYVVQKVLETCDDQQR 848
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG ++ ++
Sbjct: 849 EMILTRIKAHLNTLKKYTYGKHIVARV 875
>ref|NP_914350.1| P0518C01.14 [Oryza sativa (japonica cultivar-group)]
Length = 909
Score = 252 bits (644), Expect = 4e-65
Identities = 142/262 (54%), Positives = 182/262 (69%), Gaps = 17/262 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETAS EEK +F EI+P A LMTDVFGNYV+QKFFEHG+ +Q KELA+Q
Sbjct: 591 YGSRFIQQKLETASTEEKDMVFAEIMPQALTLMTDVFGNYVVQKFFEHGSSAQIKELADQ 650
Query: 745 LTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNG-----VRAQWCNNEMCT*P 799
L G VL LSLQMYGCR I+ + L+ T + AE +G VR Q N+ +
Sbjct: 651 LIGRVLALSLQMYGCRAIEVVDLDQQTKM------VAELDGQVMRCVRDQNGNHVIQKCI 704
Query: 800 KWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQ 859
+ P ++ + V S ++ + S + + + CDD KTQ+I+M+EI+Q
Sbjct: 705 ECIPQHAIQFIV------STFYGQVVMLSTHPYGCRVIQRVLEHCDDPKTQQIMMDEILQ 758
Query: 860 SVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSP 919
SVC LA DQYGNYV+QH+LEHGKP+ER+ +I KL GQIV+MSQQKFASNVIEKCLAFG+P
Sbjct: 759 SVCLLATDQYGNYVVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLAFGNP 818
Query: 920 EERQILVNEMLGTSDENEPLQV 941
ERQ+L+ EMLG+S+E+E L+V
Sbjct: 819 VERQVLIGEMLGSSNESEHLEV 840
Score = 150 bits (380), Expect = 1e-34
Identities = 118/370 (31%), Positives = 181/370 (48%), Gaps = 56/370 (15%)
Query: 20 EDTLQSELERILQEQRNQQFINRERGYDIYRSGSAPPTVEGSLSAFGSLRNFDYRANNSG 79
E ++ E R + ++ Q +RER D++RSGSAPPTVEGS+ A + D
Sbjct: 4 EMAMRGEPWRRQEGEQAQAEADRERELDLFRSGSAPPTVEGSMGALHAAAAAD------- 56
Query: 80 RSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIE 139
V EDE+R+ PAY SYYYS+ +INPRLPPPLLSKEDWR AQR + G G
Sbjct: 57 -------VFLEDELRADPAYHSYYYSNGNINPRLPPPLLSKEDWRSAQRLRPGLGG---- 105
Query: 140 RFGDWRK-----------NATSNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLPRQS 188
GD RK A G L M PG + + +N ++ +
Sbjct: 106 -IGDGRKPRGGGGGRGGGGAGGMGPGDGLIGM-PGLEIGR-QNSFSGFGTIKRLSVAKVL 162
Query: 189 STQLLDRHMDGMTRMPGTSLGVRRTCYSDILQDGFDQPTLSSNMSRPASHNAFVDIRDST 248
+LL L + SD+ + + R ++ D+ S+
Sbjct: 163 VLKLL------------IILFKAKEITSDLYM--MQDDSYQHDTDRQGANCNGTDLLSSS 208
Query: 249 GI---VDRE--PLEGLRSSASTPGLVGLQNHGVNSHNFSSVVGSSLSRSTTPESHVIGRP 303
+ + RE + GL S + P L +N +SH+++S++GSSLSRS +P+ ++ R
Sbjct: 209 KVQYGLHRETGAISGLHSDSKAPCLP--ENQNESSHSYASIIGSSLSRSASPDPELVRRV 266
Query: 304 VGSGVPQMGSKVFSAE---NIGLGNHNGHSSNMTDLADMVSSLSGLNLSGARRAEQDNLL 360
+P +G K+ + + N+G + N S N+ + D+VS+LSG+NLS +R + +
Sbjct: 267 PSPCLPPIGVKLGATDKKNNVGSSSFNCSSPNIIESDDLVSALSGMNLSSSRAMNGNTMD 326
Query: 361 KSKLQVEVDN 370
+SKL +VD+
Sbjct: 327 QSKLHQDVDD 336
Score = 42.0 bits (97), Expect = 0.096
Identities = 23/87 (26%), Positives = 42/87 (47%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEIL------PHARALMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ L + E+ + E+L H +M D F NYV+QK E D QR
Sbjct: 804 FASNVIEKCLAFGNPVERQVLIGEMLGSSNESEHLEVMMKDQFANYVVQKVLETCDDQQR 863
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG ++ ++
Sbjct: 864 EMILTRIKAHLNTLKKYTYGKHIVARV 890
>gb|AAM22812.1| BPM [Hordeum vulgare]
Length = 911
Score = 250 bits (638), Expect = 2e-64
Identities = 144/266 (54%), Positives = 180/266 (67%), Gaps = 21/266 (7%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETAS EEK +F EI+P A LMTDVFGNYV+QKFFEHG+ +Q KEL++Q
Sbjct: 588 YGSRFIQQKLETASTEEKDMVFSEIMPQALTLMTDVFGNYVVQKFFEHGSTTQIKELSDQ 647
Query: 745 LTGHVLPLSLQMYGCRVIQKLL----LNLLTGLGGG*C*SAEPNG-----VRAQWCNNEM 795
L G VL LSLQMYGCRVIQK + L T + G E +G VR Q N+ +
Sbjct: 648 LIGRVLALSLQMYGCRVIQKAIEVVDLAQQTKMVG------ELDGHIMRCVRDQNGNHVI 701
Query: 796 CT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIME 855
+ C + + S ++ + S + + + CDD TQ+I+M+
Sbjct: 702 ------QKCIECIPQDIIQFIVSTFYGQVVLLSTHPYGCRVIQRVLEHCDDPTTQQIMMD 755
Query: 856 EIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLA 915
EI+QSVC LAQDQYGNYV+QH+LEHGKP+ERT +I KL GQIV+MSQQKFASNVIEKCLA
Sbjct: 756 EILQSVCLLAQDQYGNYVVQHVLEHGKPHERTAIIDKLIGQIVQMSQQKFASNVIEKCLA 815
Query: 916 FGSPEERQILVNEMLGTSDENEPLQV 941
FG+P ERQIL+ EML ++ E+EPL+V
Sbjct: 816 FGNPVERQILIGEMLESTTESEPLEV 841
Score = 116 bits (291), Expect = 3e-24
Identities = 97/342 (28%), Positives = 165/342 (47%), Gaps = 51/342 (14%)
Query: 43 ERG-YDIYRSGSAPPTVEGSLSAFGSLRNFDYRANNSGRSNNNDGVLTEDEIRSHPAYLS 101
ERG ++++RSGSAPPTVEG+++ A G VL +DE+R+ PAY S
Sbjct: 20 ERGDFELFRSGSAPPTVEGAMAM---------AAGGGGE------VLLDDELRADPAYQS 64
Query: 102 YYYSHESINPRLPPPLLSKEDWRVAQRFQA----GGGSSSIERFGDWRKNATSNGDSSSL 157
YYYS+ +NPRLPPPLLSKEDWR A A GS+ G R G S+
Sbjct: 65 YYYSNAHLNPRLPPPLLSKEDWRSASTASAPPPPPPGSAGSATAGGRR----GTGSSACP 120
Query: 158 FSMQPGFSVQQAEND-LMELRKASGRNLPRQSSTQLLDRHMDGMTRMPGTSLGVRRTCYS 216
S P + + L+ + S + +T++ ++ ++ V +C
Sbjct: 121 GSTTPASAASPPSSSILLSVLSVSA----YERTTEVCGGQLNEQSKFIAV---VHTSCVH 173
Query: 217 DILQDGFDQPTLSSNMSRPASHNAFVDIRDSTGIV-----DREPLEGLRSSASTPGLVGL 271
++ + + ++ R +++++ D DS+G+ D + GL+ ++ L +
Sbjct: 174 ELPLHTLQEDSNQRDVDRQSANHSRNDFLDSSGMQYALHRDTGAMGGLQRESNEQTLADI 233
Query: 272 QNHGVNSHNFSSVVGSSLSRSTTPESHVIGRPVGSGVPQMGSKVFSAE---NIGLGNHNG 328
+N+ ++SH S +P+ ++ R +P +G KV + + N G +
Sbjct: 234 RNNELSSH-----------ASASPDPELVRRVPSPCLPPIGVKVGAYDKKSNGGSSSFRR 282
Query: 329 HSSNMTDLADMVSSLSGLNLSGARRAEQDNLLKSKLQVEVDN 370
SS + + D+V++LSG+NLS +R + +SKL +VDN
Sbjct: 283 SSSAVGEPDDLVAALSGMNLSSSRAGNGQAMDQSKLYQDVDN 324
Score = 59.3 bits (142), Expect = 6e-07
Identities = 55/254 (21%), Positives = 105/254 (40%), Gaps = 45/254 (17%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E + ++TK+ E+ H + D GN+VIQK E + +
Sbjct: 657 LQMYGCRVIQKAIEVVDLAQQTKMVGELDGHIMRCVRDQNGNHVIQKCIECIPQDIIQFI 716
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G V+ LS YGCRVIQ++L E C P
Sbjct: 717 VSTFYGQVVLLSTHPYGCRVIQRVL---------------------------EHCDDPTT 749
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ + + V L A Y + VQ + + I+++++ +
Sbjct: 750 QQIMMD----------EILQSVCLLAQ--DQYGNYVVQHVLEHGKPHERTAIIDKLIGQI 797
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVK------MSQQKFASNVIEKCLA 915
++Q ++ + VI+ L G P ER I+I ++ + M + +FA+ V++K L
Sbjct: 798 VQMSQQKFASNVIEKCLAFGNPVERQILIGEMLESTTESEPLEVMMKDQFANYVVQKVLE 857
Query: 916 FGSPEERQILVNEM 929
++R++++ +
Sbjct: 858 TCDDQQREMILTRI 871
Score = 38.5 bits (88), Expect = 1.1
Identities = 22/87 (25%), Positives = 41/87 (46%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ L + E+ + E+L +M D F NYV+QK E D QR
Sbjct: 805 FASNVIEKCLAFGNPVERQILIGEMLESTTESEPLEVMMKDQFANYVVQKVLETCDDQQR 864
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG ++ ++
Sbjct: 865 EMILTRIKAHLNTLKKYTYGKHIVARV 891
Score = 35.8 bits (81), Expect = 6.9
Identities = 18/55 (32%), Positives = 35/55 (62%), Gaps = 1/55 (1%)
Query: 877 ILEHGKPNE-RTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEML 930
+LE K N+ RT +S++AG +V+ S ++ S I++ L S EE+ ++ +E++
Sbjct: 559 LLEEFKSNKSRTYELSEIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVFSEIM 613
Score = 35.8 bits (81), Expect = 6.9
Identities = 19/83 (22%), Positives = 47/83 (55%), Gaps = 11/83 (13%)
Query: 850 QEIIMEEIMQSVC------TLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQ 903
++I++ E+++S + +DQ+ NYV+Q +LE +R ++++++ + + +
Sbjct: 822 RQILIGEMLESTTESEPLEVMMKDQFANYVVQKVLETCDDQQREMILTRIKAHLNTLKKY 881
Query: 904 KFASNV---IEKCLAFGSPEERQ 923
+ ++ +EK +A G E+RQ
Sbjct: 882 TYGKHIVARVEKLVAAG--EKRQ 902
>gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana]
Length = 972
Score = 249 bits (637), Expect = 2e-64
Identities = 143/269 (53%), Positives = 178/269 (66%), Gaps = 29/269 (10%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETA+ +EK ++ EI+PHA ALMTDVFGNYVIQKFFEHG QR+ELA++
Sbjct: 647 YGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRELADK 706
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
L +VLPLSLQMYGCRVIQK + + ++ L G VR Q N+ +
Sbjct: 707 LFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGH-----VMRCVRDQNGNHVV- 760
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTF----YSSLWVQSYSD-CDDLKTQE 851
+ C C E N + + + T Y +Q + C D TQ
Sbjct: 761 -----QKCIE-----CVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQS 810
Query: 852 IIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIE 911
+M+EIM ++ LAQDQYGNYVIQH+LEHGKP+ERT++I +LAG+IV+MSQQKFASNV+E
Sbjct: 811 KVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 870
Query: 912 KCLAFGSPEERQILVNEMLGTSDENEPLQ 940
KCL FG PEER+ LVNEMLGT+DENEPLQ
Sbjct: 871 KCLTFGGPEEREFLVNEMLGTTDENEPLQ 899
Score = 166 bits (421), Expect = 3e-39
Identities = 127/361 (35%), Positives = 190/361 (52%), Gaps = 66/361 (18%)
Query: 21 DTLQSELERILQEQRNQQFI--NRERGYDIYRSGSAPPTVEGSLSAFGSLRN-------F 71
D + E+ +L EQ+ +Q ER ++YRSGSAPPTV+GS+SA G L +
Sbjct: 21 DDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGSVSAAGGLFSGGGGAPFL 80
Query: 72 DYRANNSGRSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQA 131
++ N G D ++E R PAYLSYYY++ +NPRLPPPL+S+ED RVAQR +
Sbjct: 81 EFGGGNKGNGFGGD----DEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVAQRLK- 135
Query: 132 GGGSSSIERFGDWRKNATSNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLPRQSSTQ 191
G S+ + GD RK DS SLFSM PGF Q + E+ K S SS++
Sbjct: 136 -GSSNVLGGVGDRRK----VNDSQSLFSMPPGF--DQRKQHEFEVEKTSA------SSSE 182
Query: 192 LLDRHMDGMTRMPGTSLGVRRTCYSDILQD--GFDQPTLSSNMSRPASHNAFVDIRDSTG 249
+G+ +PG +G ++ ++DI Q G P ++ SRPAS N F + DS
Sbjct: 183 W---DANGLIGLPGLGIGGKQKSFADIFQADMGHGHP-VTKQPSRPASRNTFDENVDSKN 238
Query: 250 IVDREPLEGLRSSASTPGLVGLQNHGVNSHNFSSVVGSSLSRSTTPESHVIGR------- 302
+ +G+ A +P +++++V+GSSLSR+ TP+ I R
Sbjct: 239 NLSPSASQGI--GAPSP------------YSYAAVLGSSLSRNGTPDPQAIARVPSPCLT 284
Query: 303 PVGSGVPQMGSKVFSAENIGLGNHNGHSSNMTDLADMVSSLSGLNLSGA------RRAEQ 356
P+GSG +V S + N + + + + +D+V++LSG+NLSG+ +AEQ
Sbjct: 285 PIGSG------RVSSNDKRNTSNQSPFNGGLNESSDLVNALSGMNLSGSGGLDERGQAEQ 338
Query: 357 D 357
D
Sbjct: 339 D 339
Score = 63.5 bits (153), Expect = 3e-08
Identities = 52/254 (20%), Positives = 111/254 (43%), Gaps = 45/254 (17%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E +++K K+ E+ H + D GN+V+QK E + + +
Sbjct: 716 LQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFI 775
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G+V+ LS YGCRVIQ++L E C P
Sbjct: 776 ISTFFGNVVTLSTHPYGCRVIQRVL---------------------------EHCHDPDT 808
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ S+V + + + + A Y + +Q + + +I++E+ +
Sbjct: 809 Q---SKVM-------DEIMSTISMLAQ--DQYGNYVIQHVLEHGKPDERTVIIKELAGKI 856
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
++Q ++ + V++ L G P ER +++++ G + M + +FA+ V++K L
Sbjct: 857 VQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLE 916
Query: 916 FGSPEERQILVNEM 929
++R++++ +
Sbjct: 917 TCDDQQRELILGRI 930
Score = 41.6 bits (96), Expect = 0.13
Identities = 23/82 (28%), Positives = 41/82 (49%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
KT+ + EI V + DQYG+ IQ LE +E+ +V ++ + + F +
Sbjct: 626 KTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGN 685
Query: 908 NVIEKCLAFGSPEERQILVNEM 929
VI+K G P +R+ L +++
Sbjct: 686 YVIQKFFEHGLPPQRRELADKL 707
Score = 39.7 bits (91), Expect = 0.48
Identities = 23/87 (26%), Positives = 43/87 (48%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L EE+ + E+L +A+M D F NYV+QK E D QR
Sbjct: 864 FASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR 923
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG ++ ++
Sbjct: 924 ELILGRIKVHLNALKKYTYGKHIVARV 950
>gb|AAC95216.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana] gi|15227051|ref|NP_180482.1| pumilio/Puf
RNA-binding domain-containing protein [Arabidopsis
thaliana] gi|25354256|pir||E84693 hypothetical protein
At2g29190 [imported] - Arabidopsis thaliana
Length = 972
Score = 249 bits (637), Expect = 2e-64
Identities = 143/269 (53%), Positives = 178/269 (66%), Gaps = 29/269 (10%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETA+ +EK ++ EI+PHA ALMTDVFGNYVIQKFFEHG QR+ELA++
Sbjct: 647 YGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRELADK 706
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
L +VLPLSLQMYGCRVIQK + + ++ L G VR Q N+ +
Sbjct: 707 LFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGH-----VMRCVRDQNGNHVV- 760
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTF----YSSLWVQSYSD-CDDLKTQE 851
+ C C E N + + + T Y +Q + C D TQ
Sbjct: 761 -----QKCIE-----CVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQS 810
Query: 852 IIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIE 911
+M+EIM ++ LAQDQYGNYVIQH+LEHGKP+ERT++I +LAG+IV+MSQQKFASNV+E
Sbjct: 811 KVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 870
Query: 912 KCLAFGSPEERQILVNEMLGTSDENEPLQ 940
KCL FG PEER+ LVNEMLGT+DENEPLQ
Sbjct: 871 KCLTFGGPEEREFLVNEMLGTTDENEPLQ 899
Score = 166 bits (421), Expect = 3e-39
Identities = 127/361 (35%), Positives = 190/361 (52%), Gaps = 66/361 (18%)
Query: 21 DTLQSELERILQEQRNQQFI--NRERGYDIYRSGSAPPTVEGSLSAFGSLRN-------F 71
D + E+ +L EQ+ +Q ER ++YRSGSAPPTV+GS+SA G L +
Sbjct: 21 DDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGSVSAAGGLFSGGGGAPFL 80
Query: 72 DYRANNSGRSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQA 131
++ N G D ++E R PAYLSYYY++ +NPRLPPPL+S+ED RVAQR +
Sbjct: 81 EFGGGNKGNGFGGD----DEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVAQRLK- 135
Query: 132 GGGSSSIERFGDWRKNATSNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLPRQSSTQ 191
G S+ + GD RK DS SLFSM PGF Q + E+ K S SS++
Sbjct: 136 -GSSNVLGGVGDRRK----VNDSQSLFSMPPGF--DQRKQHEFEVEKTSA------SSSE 182
Query: 192 LLDRHMDGMTRMPGTSLGVRRTCYSDILQD--GFDQPTLSSNMSRPASHNAFVDIRDSTG 249
+G+ +PG +G ++ ++DI Q G P ++ SRPAS N F + DS
Sbjct: 183 W---DANGLIGLPGLGIGGKQKSFADIFQADMGHGHP-VTKQPSRPASRNTFDENVDSKN 238
Query: 250 IVDREPLEGLRSSASTPGLVGLQNHGVNSHNFSSVVGSSLSRSTTPESHVIGR------- 302
+ +G+ A +P +++++V+GSSLSR+ TP+ I R
Sbjct: 239 NLSPSASQGI--GAPSP------------YSYAAVLGSSLSRNGTPDPQAIARVPSPCLT 284
Query: 303 PVGSGVPQMGSKVFSAENIGLGNHNGHSSNMTDLADMVSSLSGLNLSGA------RRAEQ 356
P+GSG +V S + N + + + + +D+V++LSG+NLSG+ +AEQ
Sbjct: 285 PIGSG------RVSSNDKRNTSNQSPFNGGLNESSDLVNALSGMNLSGSGGLDERGQAEQ 338
Query: 357 D 357
D
Sbjct: 339 D 339
Score = 63.5 bits (153), Expect = 3e-08
Identities = 52/254 (20%), Positives = 111/254 (43%), Gaps = 45/254 (17%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E +++K K+ E+ H + D GN+V+QK E + + +
Sbjct: 716 LQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFI 775
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G+V+ LS YGCRVIQ++L E C P
Sbjct: 776 ISTFFGNVVTLSTHPYGCRVIQRVL---------------------------EHCHDPDT 808
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ S+V + + + + A Y + +Q + + +I++E+ +
Sbjct: 809 Q---SKVM-------DEIMSTISMLAQ--DQYGNYVIQHVLEHGKPDERTVIIKELAGKI 856
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
++Q ++ + V++ L G P ER +++++ G + M + +FA+ V++K L
Sbjct: 857 VQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLE 916
Query: 916 FGSPEERQILVNEM 929
++R++++ +
Sbjct: 917 TCDDQQRELILGRI 930
Score = 41.6 bits (96), Expect = 0.13
Identities = 23/82 (28%), Positives = 41/82 (49%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
KT+ + EI V + DQYG+ IQ LE +E+ +V ++ + + F +
Sbjct: 626 KTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGN 685
Query: 908 NVIEKCLAFGSPEERQILVNEM 929
VI+K G P +R+ L +++
Sbjct: 686 YVIQKFFEHGLPPQRRELADKL 707
Score = 39.7 bits (91), Expect = 0.48
Identities = 23/87 (26%), Positives = 43/87 (48%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L EE+ + E+L +A+M D F NYV+QK E D QR
Sbjct: 864 FASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR 923
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG ++ ++
Sbjct: 924 ELILGRIKVHLNALKKYTYGKHIVARV 950
>gb|AAC95215.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana] gi|15227052|ref|NP_180483.1| pumilio/Puf
RNA-binding domain-containing protein [Arabidopsis
thaliana] gi|25354258|pir||F84693 hypothetical protein
At2g29200 [imported] - Arabidopsis thaliana
Length = 968
Score = 248 bits (633), Expect = 7e-64
Identities = 139/264 (52%), Positives = 178/264 (66%), Gaps = 19/264 (7%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETA+ +EK ++ EI+P A LMTDVFGNYVIQKFFEHG QR+ELA +
Sbjct: 643 YGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRRELAEK 702
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
L HVLPLSLQMYGCRVIQK + + ++ L G VR Q N+ +
Sbjct: 703 LFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGH-----VMRCVRDQNGNHVVQ 757
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEE 856
+ P + + + ++ + HV + S + + + C D TQ +MEE
Sbjct: 758 KCIECVPEENIEFII-----STFFGHV-VTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEE 811
Query: 857 IMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAF 916
I+ +V LAQDQYGNYV+QH+LEHGKP+ERT++I +LAG+IV+MSQQKFASNV+EKCL F
Sbjct: 812 ILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTF 871
Query: 917 GSPEERQILVNEMLGTSDENEPLQ 940
G PEER++LVNEMLGT+DENEPLQ
Sbjct: 872 GGPEERELLVNEMLGTTDENEPLQ 895
Score = 159 bits (402), Expect = 4e-37
Identities = 136/447 (30%), Positives = 209/447 (46%), Gaps = 92/447 (20%)
Query: 21 DTLQSELERILQEQRNQQFI--NRERGYDIYRSGSAPPTVEGSLSAFGSLRN-------F 71
D + E+ +L EQ+ +Q ER +++RSGSAPPTV+GS+SA G L +
Sbjct: 21 DDYEKEIGVLLGEQQRRQVEADELERELNLFRSGSAPPTVDGSVSAAGGLFSGGGGAPFL 80
Query: 72 DYRANNSGRSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQA 131
++ N G D ++E R PAYLSYYY++ +NPRLPPPL+S+ED RVAQR +
Sbjct: 81 EFGGVNKGNGFGGD----DEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVAQRLK- 135
Query: 132 GGGSSSIERFGDWRKNATSNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLPRQSSTQ 191
G ++ + GD RK D+ SLFSM PGF + ++
Sbjct: 136 -GSNNVLGGVGDRRK----VNDNRSLFSMPPGFEGE-------------------KTGAS 171
Query: 192 LLDRHMDGMTRMPGTSLGVRRTCYSDILQD--GFDQPTLSSNMSRPASHNAFVDIRDSTG 249
+ +G+ +PG LG ++ ++DI Q G P ++ SRPAS N F + DS
Sbjct: 172 ASEWDANGLIGLPGLGLGGKQKSFADIFQADMGHGHP-VAQQPSRPASRNTFDENVDSNN 230
Query: 250 IVDREPLEGLRSSASTPGLVGLQNHGVNSHNFSSVVGSSLSRSTTPESHVIGR------- 302
+ +G+ A +P +++++V+GSSLSR+ TP+ I R
Sbjct: 231 NLSPSASQGI--GAPSP------------YSYAAVLGSSLSRNGTPDPQAIARVPSPCLT 276
Query: 303 PVGSGVPQMGSKVFSAENIGLGNHNGHSSNMTDLADMVSSLSGLNLSGARRAEQDNLLKS 362
P+GSG K ++ NG +S + + +D+V++LSGLNLS + + +S
Sbjct: 277 PIGSGRMSSNDKRNTSNQ---SPFNGVTSGLNESSDLVNALSGLNLSCSVGLDD----RS 329
Query: 363 KLQVEVDNHANVMLSTPNNVNLPKHNELATDLNTFSLNERVNLLKKTASYANLRSNAH-S 421
+ + +V+ N M HNE+ + N AH +
Sbjct: 330 QAEQDVEKVRNYMFGLQGG-----HNEV-----------------NQHEFPNKSDQAHKA 367
Query: 422 TGNLTSIDFAGQVPSAYPANTTLNNVY 448
TG+L + G SAY L N Y
Sbjct: 368 TGSLRNSQLRGPHGSAYNGGVGLANPY 394
Score = 68.6 bits (166), Expect = 1e-09
Identities = 51/254 (20%), Positives = 109/254 (42%), Gaps = 45/254 (17%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E +++K K+ E+ H + D GN+V+QK E + + +
Sbjct: 712 LQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFI 771
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ GHV+ LS YGCRVIQ++L + C++
Sbjct: 772 ISTFFGHVVTLSTHPYGCRVIQRVL----------------------EHCHDPDTQSKVM 809
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ S V + + Y + VQ + + +I++E+ +
Sbjct: 810 EEILSTVSMLAQDQ-----------------YGNYVVQHVLEHGKPDERTVIIKELAGKI 852
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
++Q ++ + V++ L G P ER ++++++ G + M + +FA+ V++K L
Sbjct: 853 VQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLE 912
Query: 916 FGSPEERQILVNEM 929
++R++++ +
Sbjct: 913 TCDDQQRELILTRI 926
Score = 43.1 bits (100), Expect = 0.043
Identities = 24/82 (29%), Positives = 41/82 (49%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
KT+ + EI V + DQYG+ IQ LE +E+ +V ++ Q + + F +
Sbjct: 622 KTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGN 681
Query: 908 NVIEKCLAFGSPEERQILVNEM 929
VI+K G P +R+ L ++
Sbjct: 682 YVIQKFFEHGLPPQRRELAEKL 703
Score = 41.6 bits (96), Expect = 0.13
Identities = 24/87 (27%), Positives = 43/87 (48%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L EE+ + E+L +A+M D F NYV+QK E D QR
Sbjct: 860 FASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR 919
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG V+ ++
Sbjct: 920 ELILTRIKVHLTALKKYTYGKHVVARI 946
>gb|AAC95220.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana] gi|15227038|ref|NP_180478.1| pumilio/Puf
RNA-binding domain-containing protein [Arabidopsis
thaliana] gi|25354254|pir||A84693 hypothetical protein
At2g29140 [imported] - Arabidopsis thaliana
Length = 964
Score = 242 bits (617), Expect = 5e-62
Identities = 136/264 (51%), Positives = 177/264 (66%), Gaps = 19/264 (7%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETA+ +EK ++ EI+P A ALMTDVFGNYVIQKFFEHG QR+EL +
Sbjct: 639 YGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEK 698
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
L +VLPLSLQMYGCRVIQK + + ++ L G VR Q N+ +
Sbjct: 699 LIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGH-----VMRCVRDQNGNHVVQ 753
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEE 856
+ P + + + ++ + HV + S + + + C + TQ +MEE
Sbjct: 754 KCIECVPEENIEFII-----STFFGHV-VTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEE 807
Query: 857 IMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAF 916
I+ +V L QDQYGNYV+QH+LEHGKP+ERT++I +LAG+IV+MSQQKFASNV+EKCL F
Sbjct: 808 ILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTF 867
Query: 917 GSPEERQILVNEMLGTSDENEPLQ 940
G PEER++LVNEMLGT+DENEPLQ
Sbjct: 868 GGPEERELLVNEMLGTTDENEPLQ 891
Score = 159 bits (403), Expect = 3e-37
Identities = 137/450 (30%), Positives = 206/450 (45%), Gaps = 98/450 (21%)
Query: 21 DTLQSELERILQEQRNQQFI--NRERGYDIYRSGSAPPTVEGSLSAFGSLRN-------F 71
D + E+ +L EQ+ +Q ER ++YRSGSAPPTV+GSLSA G L +
Sbjct: 22 DDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGSLSAAGGLFSGGGGASFL 81
Query: 72 DYRANNSGRSNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQA 131
++ N G D ++E R PAYLSYYY++ +NPRLPPPL+S+ED RVAQR +
Sbjct: 82 EFGGVNKGNGFGGD----DEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVAQRLK- 136
Query: 132 GGGSSSIERFGDWRKNATSNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLPRQSSTQ 191
G ++ + GD RK DS SLFSM PGF + G + +
Sbjct: 137 -GSNNVLGGVGDRRK----VNDSRSLFSMPPGFEAGK-----------PGASASEWDANG 180
Query: 192 LLDRHMDGMTRMPGTSLGVRRTCYSDILQDGFDQPTLSSNMSRPASHNAFVDIRDSTGIV 251
L+ G LG ++ ++DI Q P + SRPAS N F + DS +
Sbjct: 181 LI-----------GLGLGGKQKSFADIFQADMGHPVV-QQPSRPASRNTFDENVDSNNNL 228
Query: 252 DREPLEGLRSSASTPGLVGLQNHGVNSHNFSSVVGSSLSRSTTPESHVIGR-------PV 304
+G+ A +P + +++V+GSSLSR+ TP+ I R P+
Sbjct: 229 SPSASQGI--GAPSP------------YCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPI 274
Query: 305 GSGVPQMGSKVFSAENIGLGNH---NGHSSNMTDLADMVSSLSGLNLSGARRAEQDNLLK 361
GSG +V S + N NG +S + + +D+V++LSGLNLSG ++ +
Sbjct: 275 GSG------RVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTGGLDE----R 324
Query: 362 SKLQVEVDNHANVMLSTPNNVNLPKHNELATDLNTFSLNERVNLLKKTASYANLRSNAHS 421
+ + +V+ N M + HNE+ + N A
Sbjct: 325 GQAEQDVEKVRNYMFGLQDG-----HNEV-----------------NPHGFPNRSDQARG 362
Query: 422 TGNLTSIDFAGQVPSAYPANTTLNNVYNNH 451
T + + G SAY + + + N Y +H
Sbjct: 363 TASCRNSQMRGSQGSAYNSGSGVANPYQHH 392
Score = 70.5 bits (171), Expect = 3e-10
Identities = 53/256 (20%), Positives = 110/256 (42%), Gaps = 49/256 (19%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E +++K ++ E+ H + D GN+V+QK E + + +
Sbjct: 708 LQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFI 767
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ GHV+ LS YGCRVIQ++L + C+N
Sbjct: 768 ISTFFGHVVTLSTHPYGCRVIQRVL----------------------EHCHN-------- 797
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCT--FYSSLWVQSYSDCDDLKTQEIIMEEIMQ 859
P + V + S T Y + VQ + + +I++E+
Sbjct: 798 -----------PDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAG 846
Query: 860 SVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKC 913
+ ++Q ++ + V++ L G P ER ++++++ G + M + +FA+ V++K
Sbjct: 847 KIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKV 906
Query: 914 LAFGSPEERQILVNEM 929
L ++R++++ +
Sbjct: 907 LETCDDQQRELILTRI 922
Score = 41.6 bits (96), Expect = 0.13
Identities = 23/83 (27%), Positives = 42/83 (49%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
KT+ + EI V + DQYG+ IQ LE +E+ +V ++ + + + F +
Sbjct: 618 KTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGN 677
Query: 908 NVIEKCLAFGSPEERQILVNEML 930
VI+K G P +R+ L +++
Sbjct: 678 YVIQKFFEHGLPPQRRELGEKLI 700
Score = 40.0 bits (92), Expect = 0.37
Identities = 23/87 (26%), Positives = 43/87 (48%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L EE+ + E+L +A+M D F NYV+QK E D QR
Sbjct: 856 FASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR 915
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + ++ H+ L YG ++ ++
Sbjct: 916 ELILTRIKVHLNALKKYTYGKHIVARV 942
>ref|XP_483360.1| putative pumilio-family RNA-binding domain-containing protein(PPD1)
[Oryza sativa (japonica cultivar-group)]
gi|42409165|dbj|BAD10431.1| putative pumilio-family
RNA-binding domain-containing protein(PPD1) [Oryza
sativa (japonica cultivar-group)]
gi|42408517|dbj|BAD09696.1| putative pumilio-family
RNA-binding domain-containing protein(PPD1) [Oryza
sativa (japonica cultivar-group)]
Length = 1006
Score = 211 bits (538), Expect = 7e-53
Identities = 127/272 (46%), Positives = 161/272 (58%), Gaps = 37/272 (13%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
+ S FIQQKLE + EEK +F E+LPHA +LMTDVFGNYVIQKFFEHGT QR++LA +
Sbjct: 690 HGSRFIQQKLENCTAEEKASVFSEVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLATK 749
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
L GHVLPLSLQMYGCRVIQK L + L+ L G N +R N
Sbjct: 750 LVGHVLPLSLQMYGCRVIQKALEVMELDQKIELVRELDG--------NIMRCVRDQNGNH 801
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSY---------SDCDDL 847
K C P+E H F+ ++ +SL + Y C
Sbjct: 802 VIQKCIEC-------VPTE-----HIGFVVSAFRGQVASLSMHPYGCRVIQRVLEHCGGD 849
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
+ I++EI++S C LAQDQYGNYV QH+LE G+ +ERT +ISKLAGQ+V MSQ KFAS
Sbjct: 850 SQGQCIIDEILESACVLAQDQYGNYVTQHVLERGRGHERTQIISKLAGQVVTMSQNKFAS 909
Query: 908 NVIEKCLAFGSPEERQILVNEMLGTSDENEPL 939
NVIEKC G ER +L+ E++ ++ N+ L
Sbjct: 910 NVIEKCFQHGDMTERDLLIREIVKQTEGNDNL 941
Score = 89.0 bits (219), Expect = 7e-16
Identities = 83/318 (26%), Positives = 143/318 (44%), Gaps = 53/318 (16%)
Query: 50 RSGSAPPTVEGSLSAFGSL---RNFDYRANNSGRSNN-NDGVLTEDEIRSHPAYLSYYYS 105
RSGSAPP++EGSL+A G + ++ + A G+ N D +E+++R+ PAY YY S
Sbjct: 57 RSGSAPPSMEGSLAALGHMIGQQSGNLEATLGGKLGNVADSSKSEEQLRADPAYCDYYGS 116
Query: 106 HESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIERFGDWRKNATSNGDSSSLFSMQPGFS 165
++NPRLPPPL+S+E R R + + +WR + + + SLF + S
Sbjct: 117 KVNLNPRLPPPLMSRESRRFMNR---------VGKVKEWRVVSQDDSNKGSLFIPRSTLS 167
Query: 166 VQQAENDLMELRKASGRNLPRQSSTQLLDRHMDGMTRMPGTSLGVRRTCYS--DILQDGF 223
+ E + PR S+ D G + G++ TC + D + F
Sbjct: 168 THREEPE--------DDRSPRLDSSSAEDAQGSGKS---GSNFDSHYTCMNLGDFASESF 216
Query: 224 DQ--PTLSSNMSRPASHNAFVDIRDSTGI-------VDREPLEGLRSSASTPGLVGLQNH 274
Q +L + + P++ N I D + I +D GL S P +
Sbjct: 217 QQKAASLYDSSTHPSNSNTGDGISDHSDINSSTNFSIDAVKTSGLNSWTPVP-----VTN 271
Query: 275 GVNSHNFSSVVGSSLSRSTTPESHVIGRPVGSGVPQMGSKVFSAENIGLGNHN---GHSS 331
V S + +S+ +S+ S++P+++ P M + +I + + N G S
Sbjct: 272 TVRSTHSNSISSTSVPSSSSPDNN----------PSMQTSQQEKPSIDIKHGNDVPGSGS 321
Query: 332 NMTDLADMVSSLSGLNLS 349
+T+L + S++ L +S
Sbjct: 322 ILTELDTVNSNMKNLRIS 339
Score = 47.4 bits (111), Expect = 0.002
Identities = 27/85 (31%), Positives = 43/85 (49%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ LE +++K ++ E+ + + D GN+VIQK E +
Sbjct: 759 LQMYGCRVIQKALEVMELDQKIELVRELDGNIMRCVRDQNGNHVIQKCIECVPTEHIGFV 818
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLL 766
+ G V LS+ YGCRVIQ++L
Sbjct: 819 VSAFRGQVASLSMHPYGCRVIQRVL 843
Score = 42.7 bits (99), Expect = 0.056
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHAR------ALMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ + + E+ + EI+ A+M D + NYV+QK E + QR
Sbjct: 907 FASNVIEKCFQHGDMTERDLLIREIVKQTEGNDNLLAMMKDQYANYVVQKILETCNEQQR 966
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ L +++ GH+ L YG ++ ++
Sbjct: 967 ELLLSRVKGHLQALRKYTYGKHIVSRV 993
Score = 41.6 bits (96), Expect = 0.13
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
+ + + + +I + + DQ+G+ IQ LE+ E+ V S++ + F +
Sbjct: 669 RARRVELSDIAGHIVEYSADQHGSRFIQQKLENCTAEEKASVFSEVLPHASSLMTDVFGN 728
Query: 908 NVIEKCLAFGSPEERQILVNEMLG 931
VI+K G+PE+R+ L +++G
Sbjct: 729 YVIQKFFEHGTPEQRRDLATKLVG 752
Score = 40.8 bits (94), Expect = 0.21
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 846 DLKTQEIIME-EIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQK 904
DL +EI+ + E ++ + +DQY NYV+Q ILE +R +++S++ G + + +
Sbjct: 925 DLLIREIVKQTEGNDNLLAMMKDQYANYVVQKILETCNEQQRELLLSRVKGHLQALRKYT 984
Query: 905 FASNVIEK 912
+ +++ +
Sbjct: 985 YGKHIVSR 992
Score = 37.4 bits (85), Expect = 2.4
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQR----KE 740
Y + Q LE E+T+I ++ + + F + VI+K F+HG ++R +E
Sbjct: 871 YGNYVTQHVLERGRGHERTQIISKLAGQVVTMSQNKFASNVIEKCFQHGDMTERDLLIRE 930
Query: 741 LANQLTG--HVLPLSLQMYGCRVIQKLL 766
+ Q G ++L + Y V+QK+L
Sbjct: 931 IVKQTEGNDNLLAMMKDQYANYVVQKIL 958
>gb|AAF71823.1| pumilio domain-containing protein PPD1 [Populus tremula x Populus
tremuloides]
Length = 966
Score = 204 bits (519), Expect = 1e-50
Identities = 117/261 (44%), Positives = 158/261 (59%), Gaps = 11/261 (4%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
+ S FIQQKLE +VEEK +F E+LPHA LMTDVFGNYVIQKFFEHG+ QR ELA +
Sbjct: 677 HGSRFIQQKLENCNVEEKESVFKEVLPHAPKLMTDVFGNYVIQKFFEHGSPEQRIELAEK 736
Query: 745 LTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPC 804
L+G +L LSLQMYGCRVIQK L + + + +R N K C
Sbjct: 737 LSGQILQLSLQMYGCRVIQKALEVIELDQKAKLAQELDGHVMRCVHDQNGNHVIQKCIEC 796
Query: 805 YSEVYRVCPSE----*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQS 860
P+E S + + S + + + C D + I++EI++S
Sbjct: 797 -------VPAEHIEFIISAFRGQVVTLSTHPYGCRVIQRVLEHCSDELQSQCIVDEILES 849
Query: 861 VCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPE 920
LAQDQYGNYV QH+LE GKP+ER+ +ISKL G+IV+MSQ K+ASNV+EKCL
Sbjct: 850 SYLLAQDQYGNYVTQHVLERGKPHERSQIISKLTGKIVQMSQHKYASNVVEKCLKHADAT 909
Query: 921 ERQILVNEMLGTSDENEPLQV 941
ER++++ E++G S++N+ L +
Sbjct: 910 ERELMIGEIIGQSEDNDNLLI 930
Score = 79.0 bits (193), Expect = 7e-13
Identities = 61/199 (30%), Positives = 104/199 (51%), Gaps = 36/199 (18%)
Query: 50 RSGSAPPTVEGSLSAFGSLRNFDYRANNSGRSNNNDGV-------LTEDEIRSHPAYLSY 102
RSGSAPP++EGS +A G+L +NSG S++ + + +E+++RS PAY +Y
Sbjct: 59 RSGSAPPSMEGSFAAIGNL----LAQHNSGMSSSLESLGSVIENCESEEQLRSDPAYFAY 114
Query: 103 YYSHESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIERFGDWRKNATSNGDSSSLFSMQP 162
Y S+ ++NPRLPPPLLS+E+ R+ GG FG+ + + NG
Sbjct: 115 YCSNVNLNPRLPPPLLSRENRRLVHHI--GG-------FGNNWRPESGNG---------- 155
Query: 163 GFSVQQAENDLMELRKASGRNLPRQSSTQLLDRHMDGMTRMPGTSLGVRRTCYSDILQDG 222
S+Q ++ L ++ + + +++ ++ G + TSL R D++Q+
Sbjct: 156 --SLQLPKSSLSTHKEEPNEDRSPRGASENSGVYISGQST---TSLAGRHKSLVDLIQED 210
Query: 223 FDQ-PTLSSNMSRPASHNA 240
F + P+ + SR +SH A
Sbjct: 211 FPRTPSPVYSQSRSSSHAA 229
Score = 40.4 bits (93), Expect = 0.28
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHAR------ALMTDVFGNYVIQKFFEHGTDSQR 738
Y+S +++ L+ A E+ + EI+ + +M D F NYV+QK E D Q+
Sbjct: 894 YASNVVEKCLKHADATERELMIGEIIGQSEDNDNLLIMMKDQFANYVVQKILETSNDKQK 953
Query: 739 KELANQLTGHVL 750
+ L +++ H++
Sbjct: 954 EILLSRINAHLM 965
Score = 38.5 bits (88), Expect = 1.1
Identities = 21/78 (26%), Positives = 38/78 (47%)
Query: 854 MEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKC 913
+ ++ + + DQ+G+ IQ LE+ E+ V ++ K+ F + VI+K
Sbjct: 662 LSDVAGRIVEFSVDQHGSRFIQQKLENCNVEEKESVFKEVLPHAPKLMTDVFGNYVIQKF 721
Query: 914 LAFGSPEERQILVNEMLG 931
GSPE+R L ++ G
Sbjct: 722 FEHGSPEQRIELAEKLSG 739
>gb|EAL85609.1| Pumilio 2 [Aspergillus fumigatus Af293]
Length = 908
Score = 164 bits (414), Expect = 2e-38
Identities = 99/256 (38%), Positives = 146/256 (56%), Gaps = 10/256 (3%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
+ S FIQQKLETA+ +EK ++F EI P+ LMTDVFGNYV+QK FEHG SQ+K LANQ
Sbjct: 504 HGSRFIQQKLETANSDEKEQVFREIQPNCLQLMTDVFGNYVVQKLFEHGNQSQKKILANQ 563
Query: 745 LTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPC 804
+ GHVL LS QMYGCRV+QK L ++LT E + ++ N K
Sbjct: 564 MKGHVLALSTQMYGCRVVQKALEHILTDQQASMVKELENHVLKCVRDQNGNHVIQK---- 619
Query: 805 YSEVYRVCPSE*NSVYHHVF---LWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ RV PS+ + F + Y +Q + + +E I+ E+
Sbjct: 620 --AIERV-PSQYVQFIINAFKGQVSRLAAHPYGCRVIQRMLEHCEEVDRESILAELHACT 676
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEE 921
L DQ+GNYVIQH++E+G+ +R+ +I+ + Q++ S+ KFASNV+EK + FG +
Sbjct: 677 AHLIPDQFGNYVIQHVIENGEEKDRSRMINVVLSQLLMYSKHKFASNVVEKSIEFGEESQ 736
Query: 922 RQILVNEMLGTSDENE 937
RQ +++ + ++ E
Sbjct: 737 RQQIISTLTSANERGE 752
Score = 56.6 bits (135), Expect = 4e-06
Identities = 27/115 (23%), Positives = 61/115 (52%), Gaps = 2/115 (1%)
Query: 815 E*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVI 874
E +Y+H+ ++ + S ++Q + + +E + EI + L D +GNYV+
Sbjct: 488 ELKDIYNHIVEFSG--DQHGSRFIQQKLETANSDEKEQVFREIQPNCLQLMTDVFGNYVV 545
Query: 875 QHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEM 929
Q + EHG +++ I+ +++ G ++ +S Q + V++K L +++ +V E+
Sbjct: 546 QKLFEHGNQSQKKILANQMKGHVLALSTQMYGCRVVQKALEHILTDQQASMVKEL 600
>emb|CAB79443.1| pumilio-like protein [Arabidopsis thaliana]
gi|4539306|emb|CAB39609.1| pumilio-like protein
[Arabidopsis thaliana] gi|7484786|pir||T04242 abdominal
segment formation protein pumilio homolog F14M19.160 -
Arabidopsis thaliana
Length = 849
Score = 122 bits (305), Expect = 7e-26
Identities = 63/101 (62%), Positives = 74/101 (72%), Gaps = 6/101 (5%)
Query: 672 PNLLNFQISLIMW------YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYV 725
PN + +S I++ + S FIQQKLE EEK +F EILPHA LMTDVFGNYV
Sbjct: 514 PNYMITNLSKILFPFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYV 573
Query: 726 IQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKLL 766
IQKFFE+G +QRKELA+QL G ++PLSLQMYGCRVIQK L
Sbjct: 574 IQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKAL 614
Score = 95.1 bits (235), Expect = 1e-17
Identities = 45/87 (51%), Positives = 60/87 (68%)
Query: 853 IMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEK 912
I EEI++SVC L++DQYGNYV QH+LE G ER + KL+G IV++S KFASNVIEK
Sbjct: 698 ITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEK 757
Query: 913 CLAFGSPEERQILVNEMLGTSDENEPL 939
CL +G ER +++ E+ G + L
Sbjct: 758 CLEYGGRVERDLIIKEIAGPDESYNSL 784
Score = 59.7 bits (143), Expect = 4e-07
Identities = 30/79 (37%), Positives = 43/79 (53%)
Query: 853 IMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEK 912
+ EI+ C L D +GNYVIQ E+G +R + +L GQIV +S Q + VI+K
Sbjct: 553 VFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQK 612
Query: 913 CLAFGSPEERQILVNEMLG 931
L P++R L E+ G
Sbjct: 613 ALDVIEPDQRVRLARELDG 631
Score = 56.2 bits (134), Expect = 5e-06
Identities = 31/83 (37%), Positives = 45/83 (53%), Gaps = 1/83 (1%)
Query: 685 YSSGFIQQKLETASVEEKTK-IFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELAN 743
Y IQ+ LE S + + + I EIL L D +GNYV Q E GT +R+ +
Sbjct: 677 YGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGR 736
Query: 744 QLTGHVLPLSLQMYGCRVIQKLL 766
+L+GH++ LSL + VI+K L
Sbjct: 737 KLSGHIVQLSLHKFASNVIEKCL 759
Score = 48.1 bits (113), Expect = 0.001
Identities = 52/258 (20%), Positives = 101/258 (38%), Gaps = 53/258 (20%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ L+ +++ ++ E+ + D GN+VIQK E+ + +
Sbjct: 602 LQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFM 661
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
G V LS+ YGCRVIQ+LL E C+
Sbjct: 662 LYAFRGQVSSLSMHPYGCRVIQRLL---------------------------ERCS---- 690
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTF----YSSLWVQSYSDCDDLKTQEIIMEEI 857
+ R E + S C Y + Q + + +E I ++
Sbjct: 691 ---HDHQCRFITEE---------ILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKL 738
Query: 858 MQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIE 911
+ L+ ++ + VI+ LE+G ER ++I ++AG ++ M + ++ + V++
Sbjct: 739 SGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQ 798
Query: 912 KCLAFGSPEERQILVNEM 929
K + ++R L + +
Sbjct: 799 KIFETCTADQRLTLFSRV 816
Score = 42.7 bits (99), Expect = 0.056
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARA------LMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ LE E+ I EI + +M D +GNYV+QK FE T QR
Sbjct: 750 FASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQR 809
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
L +++ H L YG ++ +L
Sbjct: 810 LTLFSRVRMHASALKKYTYGKHIVSRL 836
Score = 42.7 bits (99), Expect = 0.056
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 867 DQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILV 926
DQ+G+ IQ LE+ KP E+ V ++ K+ F + VI+K +G+ +R+ L
Sbjct: 531 DQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELA 590
Query: 927 NEMLG 931
++++G
Sbjct: 591 DQLMG 595
Score = 40.0 bits (92), Expect = 0.37
Identities = 18/77 (23%), Positives = 45/77 (58%)
Query: 838 VQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQI 897
+Q + + + ++ + +++M + L+ YG VIQ L+ +P++R + +L GQ+
Sbjct: 574 IQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQV 633
Query: 898 VKMSQQKFASNVIEKCL 914
++ + + ++VI+KC+
Sbjct: 634 MRCVRDQNGNHVIQKCI 650
Score = 36.2 bits (82), Expect = 5.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 846 DLKTQEII-MEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQK 904
DL +EI +E S+ + +DQYGNYV+Q I E ++R + S++ + +
Sbjct: 768 DLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYT 827
Query: 905 FASNVIEKCLAFGSPEERQIL 925
+ +++ + L S EE Q L
Sbjct: 828 YGKHIVSR-LEQPSIEENQEL 847
>gb|AAM91800.1| putative pumilio protein [Arabidopsis thaliana]
gi|13430772|gb|AAK26008.1| putative pumilio protein
[Arabidopsis thaliana] gi|18416639|ref|NP_567733.1|
pumilio/Puf RNA-binding domain-containing protein
[Arabidopsis thaliana]
Length = 861
Score = 120 bits (302), Expect = 2e-25
Identities = 59/82 (71%), Positives = 66/82 (79%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
+ S FIQQKLE EEK +F EILPHA LMTDVFGNYVIQKFFE+G +QRKELA+Q
Sbjct: 545 HGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQ 604
Query: 745 LTGHVLPLSLQMYGCRVIQKLL 766
L G ++PLSLQMYGCRVIQK L
Sbjct: 605 LMGQIVPLSLQMYGCRVIQKAL 626
Score = 95.1 bits (235), Expect = 1e-17
Identities = 45/87 (51%), Positives = 60/87 (68%)
Query: 853 IMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEK 912
I EEI++SVC L++DQYGNYV QH+LE G ER + KL+G IV++S KFASNVIEK
Sbjct: 710 ITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEK 769
Query: 913 CLAFGSPEERQILVNEMLGTSDENEPL 939
CL +G ER +++ E+ G + L
Sbjct: 770 CLEYGGRVERDLIIKEIAGPDESYNSL 796
Score = 59.7 bits (143), Expect = 4e-07
Identities = 30/79 (37%), Positives = 43/79 (53%)
Query: 853 IMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEK 912
+ EI+ C L D +GNYVIQ E+G +R + +L GQIV +S Q + VI+K
Sbjct: 565 VFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQK 624
Query: 913 CLAFGSPEERQILVNEMLG 931
L P++R L E+ G
Sbjct: 625 ALDVIEPDQRVRLARELDG 643
Score = 56.2 bits (134), Expect = 5e-06
Identities = 31/83 (37%), Positives = 45/83 (53%), Gaps = 1/83 (1%)
Query: 685 YSSGFIQQKLETASVEEKTK-IFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELAN 743
Y IQ+ LE S + + + I EIL L D +GNYV Q E GT +R+ +
Sbjct: 689 YGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGR 748
Query: 744 QLTGHVLPLSLQMYGCRVIQKLL 766
+L+GH++ LSL + VI+K L
Sbjct: 749 KLSGHIVQLSLHKFASNVIEKCL 771
Score = 48.1 bits (113), Expect = 0.001
Identities = 52/258 (20%), Positives = 101/258 (38%), Gaps = 53/258 (20%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ L+ +++ ++ E+ + D GN+VIQK E+ + +
Sbjct: 614 LQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFM 673
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
G V LS+ YGCRVIQ+LL E C+
Sbjct: 674 LYAFRGQVSSLSMHPYGCRVIQRLL---------------------------ERCS---- 702
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTF----YSSLWVQSYSDCDDLKTQEIIMEEI 857
+ R E + S C Y + Q + + +E I ++
Sbjct: 703 ---HDHQCRFITEE---------ILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKL 750
Query: 858 MQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIE 911
+ L+ ++ + VI+ LE+G ER ++I ++AG ++ M + ++ + V++
Sbjct: 751 SGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQ 810
Query: 912 KCLAFGSPEERQILVNEM 929
K + ++R L + +
Sbjct: 811 KIFETCTADQRLTLFSRV 828
Score = 45.1 bits (105), Expect = 0.011
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 848 KTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFAS 907
K + + +I + + DQ+G+ IQ LE+ KP E+ V ++ K+ F +
Sbjct: 524 KGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGN 583
Query: 908 NVIEKCLAFGSPEERQILVNEMLG 931
VI+K +G+ +R+ L ++++G
Sbjct: 584 YVIQKFFEYGNSTQRKELADQLMG 607
Score = 42.7 bits (99), Expect = 0.056
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARA------LMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ LE E+ I EI + +M D +GNYV+QK FE T QR
Sbjct: 762 FASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQR 821
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
L +++ H L YG ++ +L
Sbjct: 822 LTLFSRVRMHASALKKYTYGKHIVSRL 848
Score = 40.0 bits (92), Expect = 0.37
Identities = 18/77 (23%), Positives = 45/77 (58%)
Query: 838 VQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQI 897
+Q + + + ++ + +++M + L+ YG VIQ L+ +P++R + +L GQ+
Sbjct: 586 IQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQV 645
Query: 898 VKMSQQKFASNVIEKCL 914
++ + + ++VI+KC+
Sbjct: 646 MRCVRDQNGNHVIQKCI 662
Score = 36.2 bits (82), Expect = 5.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 846 DLKTQEII-MEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQK 904
DL +EI +E S+ + +DQYGNYV+Q I E ++R + S++ + +
Sbjct: 780 DLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYT 839
Query: 905 FASNVIEKCLAFGSPEERQIL 925
+ +++ + L S EE Q L
Sbjct: 840 YGKHIVSR-LEQPSIEENQEL 859
>ref|NP_974618.1| pumilio/Puf RNA-binding domain-containing protein [Arabidopsis
thaliana]
Length = 852
Score = 118 bits (296), Expect = 8e-25
Identities = 60/90 (66%), Positives = 68/90 (74%)
Query: 677 FQISLIMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDS 736
F +S I + F QQKLE EEK +F EILPHA LMTDVFGNYVIQKFFE+G +
Sbjct: 528 FDLSDITGHIVEFRQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNST 587
Query: 737 QRKELANQLTGHVLPLSLQMYGCRVIQKLL 766
QRKELA+QL G ++PLSLQMYGCRVIQK L
Sbjct: 588 QRKELADQLMGQIVPLSLQMYGCRVIQKAL 617
Score = 95.1 bits (235), Expect = 1e-17
Identities = 45/87 (51%), Positives = 60/87 (68%)
Query: 853 IMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEK 912
I EEI++SVC L++DQYGNYV QH+LE G ER + KL+G IV++S KFASNVIEK
Sbjct: 701 ITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEK 760
Query: 913 CLAFGSPEERQILVNEMLGTSDENEPL 939
CL +G ER +++ E+ G + L
Sbjct: 761 CLEYGGRVERDLIIKEIAGPDESYNSL 787
Score = 59.7 bits (143), Expect = 4e-07
Identities = 30/79 (37%), Positives = 43/79 (53%)
Query: 853 IMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEK 912
+ EI+ C L D +GNYVIQ E+G +R + +L GQIV +S Q + VI+K
Sbjct: 556 VFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQK 615
Query: 913 CLAFGSPEERQILVNEMLG 931
L P++R L E+ G
Sbjct: 616 ALDVIEPDQRVRLARELDG 634
Score = 56.2 bits (134), Expect = 5e-06
Identities = 31/83 (37%), Positives = 45/83 (53%), Gaps = 1/83 (1%)
Query: 685 YSSGFIQQKLETASVEEKTK-IFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELAN 743
Y IQ+ LE S + + + I EIL L D +GNYV Q E GT +R+ +
Sbjct: 680 YGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGR 739
Query: 744 QLTGHVLPLSLQMYGCRVIQKLL 766
+L+GH++ LSL + VI+K L
Sbjct: 740 KLSGHIVQLSLHKFASNVIEKCL 762
Score = 48.1 bits (113), Expect = 0.001
Identities = 52/258 (20%), Positives = 101/258 (38%), Gaps = 53/258 (20%)
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ L+ +++ ++ E+ + D GN+VIQK E+ + +
Sbjct: 605 LQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFM 664
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
G V LS+ YGCRVIQ+LL E C+
Sbjct: 665 LYAFRGQVSSLSMHPYGCRVIQRLL---------------------------ERCS---- 693
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTF----YSSLWVQSYSDCDDLKTQEIIMEEI 857
+ R E + S C Y + Q + + +E I ++
Sbjct: 694 ---HDHQCRFITEE---------ILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKL 741
Query: 858 MQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIE 911
+ L+ ++ + VI+ LE+G ER ++I ++AG ++ M + ++ + V++
Sbjct: 742 SGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQ 801
Query: 912 KCLAFGSPEERQILVNEM 929
K + ++R L + +
Sbjct: 802 KIFETCTADQRLTLFSRV 819
Score = 42.7 bits (99), Expect = 0.056
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARA------LMTDVFGNYVIQKFFEHGTDSQR 738
++S I++ LE E+ I EI + +M D +GNYV+QK FE T QR
Sbjct: 753 FASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQR 812
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
L +++ H L YG ++ +L
Sbjct: 813 LTLFSRVRMHASALKKYTYGKHIVSRL 839
Score = 40.0 bits (92), Expect = 0.37
Identities = 18/77 (23%), Positives = 45/77 (58%)
Query: 838 VQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQI 897
+Q + + + ++ + +++M + L+ YG VIQ L+ +P++R + +L GQ+
Sbjct: 577 IQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQV 636
Query: 898 VKMSQQKFASNVIEKCL 914
++ + + ++VI+KC+
Sbjct: 637 MRCVRDQNGNHVIQKCI 653
Score = 36.2 bits (82), Expect = 5.3
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 846 DLKTQEII-MEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQK 904
DL +EI +E S+ + +DQYGNYV+Q I E ++R + S++ + +
Sbjct: 771 DLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYT 830
Query: 905 FASNVIEKCLAFGSPEERQIL 925
+ +++ + L S EE Q L
Sbjct: 831 YGKHIVSR-LEQPSIEENQEL 850
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.139 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,523,884,963
Number of Sequences: 2540612
Number of extensions: 61996190
Number of successful extensions: 204800
Number of sequences better than 10.0: 385
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 201350
Number of HSP's gapped (non-prelim): 3189
length of query: 949
length of database: 863,360,394
effective HSP length: 138
effective length of query: 811
effective length of database: 512,755,938
effective search space: 415845065718
effective search space used: 415845065718
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 80 (35.4 bits)
Medicago: description of AC144720.3