BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144564.17 - phase: 0
(559 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC33451.1| PSTVd RNA-biding protein, Virp1 [Lycopersicon es... 504 e-141
emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [So... 491 e-137
emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Ni... 481 e-134
emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Ni... 477 e-133
emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Ni... 477 e-133
emb|CAD43284.1| bromodomain-containing RNA-binding protein 1 [Ni... 465 e-129
gb|AAP40447.1| unknown protein [Arabidopsis thaliana] gi|4256879... 382 e-104
dbj|BAA98182.1| unnamed protein product [Arabidopsis thaliana] 380 e-104
emb|CAB89388.1| bromodomain protein-like [Arabidopsis thaliana] ... 348 3e-94
emb|CAD13175.1| viroid RNA-binding protein [Lycopersicon esculen... 275 2e-72
ref|XP_473938.1| OSJNBb0085C12.15 [Oryza sativa (japonica cultiv... 258 5e-67
ref|XP_507570.1| PREDICTED OSJNBa0056O06.23 gene product [Oryza ... 256 2e-66
ref|NP_849601.1| DNA-binding bromodomain-containing protein [Ara... 236 1e-60
gb|AAV84477.1| At1g73150 [Arabidopsis thaliana] gi|15219397|ref|... 235 3e-60
ref|NP_913322.1| putative PSTVd RNA-biding protein [Oryza sativa... 231 4e-59
gb|AAN13019.1| unknown protein [Arabidopsis thaliana] gi|1839453... 219 2e-55
gb|AAL07107.1| unknown protein [Arabidopsis thaliana] 218 5e-55
pir||H86312 F2H15.2 protein - Arabidopsis thaliana gi|9665057|gb... 212 2e-53
ref|XP_473936.1| OSJNBb0085C12.13 [Oryza sativa (japonica cultiv... 197 7e-49
ref|XP_479904.1| putative bromodomain-containing protein [Oryza ... 170 1e-40
>emb|CAC33451.1| PSTVd RNA-biding protein, Virp1 [Lycopersicon esculentum]
gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
Virp1 [Lycopersicon esculentum]
gi|13186134|emb|CAC33449.1| PSTVd RNA-biding protein,
Virp1 [Lycopersicon esculentum]
gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
Virp1 [Lycopersicon esculentum]
gi|10179608|gb|AAG13813.1| PSTVd RNA-binding protein
Virp1d [Lycopersicon esculentum]
gi|10179606|gb|AAG13812.1| PSTVd RNA-binding protein
Virp1c [Lycopersicon esculentum]
gi|10179604|gb|AAG13811.1| PSTVd RNA-binding protein
Virp1b [Lycopersicon esculentum]
gi|10179602|gb|AAG13810.1| PSTVd RNA-binding protein
Virp1a [Lycopersicon esculentum]
Length = 602
Score = 504 bits (1297), Expect = e-141
Identities = 308/600 (51%), Positives = 367/600 (60%), Gaps = 96/600 (16%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYA------NPNPNPKFKRNQ----------- 43
MASAVLA+RNE +W Q G G GFMGK PY+ N NPNPK K+ Q
Sbjct: 1 MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTQLNPNHNPNPKKKQKQFHHTSNGRHMD 60
Query: 44 -------SPSDDASSINRRSNDVVTN-----HSQYVTFNVSSYSKSELNELRNCFVTELE 91
+ SDDA S N+R + TN Y+TFNV SY+K+E+NELR+ + E+E
Sbjct: 61 DSPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKAEVNELRSRLMAEVE 120
Query: 92 QIRQLQTRIESGELKSRSSHNGGGSAKKSANKKFSGNKRPFPA--EKELKRSKSEVG--- 146
QIR L+ RIESG+L + + + G S KK SGNKRP P+ K+LK+ + V
Sbjct: 121 QIRNLKDRIESGQLSTTNPRSQGKS------KKQSGNKRPTPSGSSKDLKKLPNGVENRN 174
Query: 147 ----------------SAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPM 190
S MK C QIL KLMK K GWIF+ PVD AL LHDY IIK PM
Sbjct: 175 FGNPGGVDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPM 234
Query: 191 DLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQ 250
DLGTVKS LAKN Y +P EFA DV+LTF NAL YNPK VN A QLL +FE+++RP+Q
Sbjct: 235 DLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNAFAEQLLGRFEDMFRPLQ 294
Query: 251 EKFDEKSFD-------DELQASSWNHVE-PERERERVKKKDNPIPIPPPVAKRQELLPEP 302
+K ++ DELQ SSWNH+ PER KK P P+P ++K+QE +
Sbjct: 295 DKMNKLEGGRRDYHPVDELQGSSWNHIPTPERV-----KKPKPTPVPN-ISKKQERMQNH 348
Query: 303 ASTSNQPSTS----NPPPLAQSPVRTPSPTRALPVKPL---------KQPKPKARDPNKR 349
+S S PS NPP QSP+ TPSP RA KP KQPKP+A+DPNKR
Sbjct: 349 SSAST-PSLPVPPPNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAKDPNKR 407
Query: 350 EMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDR 409
EMN+EEKHKLG+GLQ LP EKM Q+VQIIRKRN HL QDGDEIELD+EA+DTETLWELDR
Sbjct: 408 EMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDR 467
Query: 410 LVTNWKKMVSKIKRQALMDNNNVPSNKGNGELPDREKVDATPPSEG------KKQKKIDT 463
VTNWKKMVSK KRQALM+N PS +A P+ KK KK D
Sbjct: 468 FVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKAKKGDV 527
Query: 464 VDEDVDIGDDMPANDFPPVEIEK------DKDMGGTGGRASSSSSGSSSSGSGDSSSSET 517
+EDV+I DD PA FPPVEIEK D++ GG GG +SSSSS SSSSGS SS S++
Sbjct: 528 GEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGSSSSSSSSSSSSGSSSSSDSDS 587
>emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [Solanum tuberosum]
Length = 602
Score = 491 bits (1265), Expect = e-137
Identities = 305/600 (50%), Positives = 360/600 (59%), Gaps = 96/600 (16%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYA------NPNPNPKFKRNQ----------- 43
MASAVLA+RNE +W Q G G GFMGK P++ N NPNPK K+ Q
Sbjct: 1 MASAVLASRNESSWAQSGGAGGGFMGKTPFSHTQLNPNHNPNPKKKQKQFHHTSNGRHID 60
Query: 44 -------SPSDDASSINRRSNDVVTN-----HSQYVTFNVSSYSKSELNELRNCFVTELE 91
+ SDDA S N+R + TN Y+TFNV SY+K E+NELR+ + E+E
Sbjct: 61 ESPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKGEVNELRSRLLAEVE 120
Query: 92 QIRQLQTRIESGELKSRSSHNGGGSAKKSANKKFSGNKRPFPAEKELKRSKSEVG----- 146
QIR L+ RIESG+L + + + G S KK SGNKRP P+ K G
Sbjct: 121 QIRNLKDRIESGQLSTTNPRSQGKS------KKLSGNKRPTPSGSSKDPKKLPNGVENRN 174
Query: 147 ----------------SAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPM 190
S MK C QIL KLMK K GWIF+ PVD AL LHDY IIK P+
Sbjct: 175 FGNPVGGGGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPI 234
Query: 191 DLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQ 250
DLGTVKS LAKN Y +P EFA DV+LTF NAL YNPK VN A QLL +FE+++RP+Q
Sbjct: 235 DLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNGFAEQLLGRFEDMFRPLQ 294
Query: 251 EKFDEKSFD-------DELQASSWNHVEPERERERVKK-KDNPIPIPPPVAKRQELLPEP 302
+K ++ DELQ SSWNH+ ERVKK K P+P ++K+QE +
Sbjct: 295 DKMNKLEGGRRDYHPVDELQGSSWNHIPTP---ERVKKPKATPVP---HISKKQERMQNH 348
Query: 303 ASTSNQPSTS----NPPPLAQSPVRTPSPTRALPVKPL---------KQPKPKARDPNKR 349
+S S PS NPP QSP+ TPSP RA P KP KQPKP+A+DPNKR
Sbjct: 349 SSAST-PSLPVPPPNPPARQQSPLSTPSPVRAPPSKPESAAKVPAMGKQPKPRAKDPNKR 407
Query: 350 EMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDR 409
MN+EEKHKLG+GLQ LP EKM Q+VQIIRKRN HL QDGDEIELD+EA+DTETLWELDR
Sbjct: 408 VMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETLWELDR 467
Query: 410 LVTNWKKMVSKIKRQALMDNN-NVPSNKGNGELPDREKVDATPPSEG------KKQKKID 462
VTNWKKMVSK KRQALM NN PS +A P+ KK KK D
Sbjct: 468 FVTNWKKMVSKTKRQALMINNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKPKKGD 527
Query: 463 TVDEDVDIGDDMPANDFPPVEIEKDKDMG-----GTGGRASSSSSGSSSSGSGDSSSSET 517
+EDV+I DD PA FPPVEIEKD+ G G GG +SSSSS SSSSGS SS S++
Sbjct: 528 VGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGSSSSSSSSSSSSGSSSSSDSDS 587
>emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Nicotiana tabacum]
Length = 617
Score = 481 bits (1237), Expect = e-134
Identities = 304/612 (49%), Positives = 369/612 (59%), Gaps = 106/612 (17%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYA------NPNPNPKFKRNQ----------- 43
MA AVLA+RNE +W Q G G GFMGK PY+ N NPNPK K+ Q
Sbjct: 1 MAFAVLASRNESSWAQSGGAGGGFMGKTPYSHTHLNPNSNPNPKKKQKQFHHASNGRHND 60
Query: 44 -------SPSDDASSINRRSNDVVTNHSQ-----YVTFNVSSYSKSELNELRNCFVTELE 91
+ SDDA S N+R + TN Y+T+NV+SY+K+EL+ELR+ V ELE
Sbjct: 61 ESPAVTQTASDDAYSFNQRPIESSTNVDGLNLGGYMTYNVASYNKTELHELRSRLVAELE 120
Query: 92 QIRQLQTRIESGELKSRSSHNGGGSAKKSANKKFSGNKRPFPAEKELKRSKSEVG----- 146
QIR L+ RIESG+L + + + G S KK SGNKRP P+ R K G
Sbjct: 121 QIRNLKDRIESGQLSTSNPRSHGKS------KKLSGNKRPTPSGSSKDRKKLLNGVDNRN 174
Query: 147 -----------------SAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHP 189
+ MK C Q+L KLMK K GWIF++PVD A+ LHDY IIK P
Sbjct: 175 FGNPGGGGGVKGIIGMENMMKECRQVLAKLMKHKSGWIFNTPVDAKAMGLHDYHQIIKRP 234
Query: 190 MDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPI 249
MDLGTVKS L N Y TP EFA DV+LTF NAL YNPK V+ A QLL +FE+++RPI
Sbjct: 235 MDLGTVKSNLINNFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMFRPI 294
Query: 250 QEKFDE-------KSFD--DELQASSWNHVEPERERERVKKKDNPIPIPPP-VAKRQELL 299
Q+K ++ + F DELQ SSWNH+ ERVKK P P P P ++K+QE +
Sbjct: 295 QDKLNKLDGGTGRRDFRAIDELQGSSWNHIPTP---ERVKK---PKPTPAPHISKKQERM 348
Query: 300 PEPASTSNQPST------SNPPPLAQ-SPVRTPSPTRALP-----------VKPL-KQPK 340
+ S+++ PS NPP + Q SP+ TPSP RA P V P+ KQPK
Sbjct: 349 MQNHSSASTPSLPVQQPPDNPPVVRQQSPLSTPSPVRAPPAAKPQSSVAAKVPPMGKQPK 408
Query: 341 PKARDPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVD 400
P+A+DPNKREM++EEKHKLG+GLQ LP EKM Q+VQIIRKRN HL QDGDEIELD+EA+D
Sbjct: 409 PRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALD 468
Query: 401 TETLWELDRLVTNWKKMVSKIKRQALMDNNNVP--SNKGNGELPDREKVDATPPSEGKK- 457
TETLWELDR VTNWKKMVSK KRQAL++N P ++ +A PS +K
Sbjct: 469 TETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTSVAEADGPSTSEKN 528
Query: 458 ------QKKIDTVDE-DVDIGDDMPANDFPPVEIEKDKDMGGTGGRA----SSSSSGSSS 506
+K D DE DV+I DD PA FPPVEIE DKD GG GG+ +SSSS SSS
Sbjct: 529 DSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDKDEGGGGGQVRDNNASSSSSSSS 588
Query: 507 SGSGDSSSSETS 518
S S DSSSS S
Sbjct: 589 SSSSDSSSSSDS 600
>emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Nicotiana tabacum]
Length = 616
Score = 477 bits (1228), Expect = e-133
Identities = 303/611 (49%), Positives = 371/611 (60%), Gaps = 105/611 (17%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYA------NPNPNPKFKRNQ----------- 43
MASAVLA+RNE +W Q G G GFMGK PY+ N NPNPK K+ Q
Sbjct: 1 MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTQLNPNSNPNPKKKQKQFHHASNGRLTD 60
Query: 44 -------SPSDDASSINRRSNDVVTNHSQ-----YVTFNVSSYSKSELNELRNCFVTELE 91
+ SDDA S N+R + TN Y+T+N +SY+K+EL+ELR+ V ELE
Sbjct: 61 ESPAVTQTASDDAYSFNQRPIESSTNVDGLNLGGYMTYNXASYNKTELHELRSRLVAELE 120
Query: 92 QIRQLQTRIESGELKSRSSHNGGGSAKKSANKKFSGNKRPFPA--EKELKRSKSEVGSA- 148
QIR L+ RIESG+L + + + G S KK SGNKRP P+ K+ K+ + V +
Sbjct: 121 QIRNLKDRIESGQLSTSNPRSHGKS------KKLSGNKRPTPSGSSKDPKKLPNGVDNRN 174
Query: 149 ------------------MKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPM 190
MK C Q+L KLMK K GWIF++PVD AL LHDY IIK P
Sbjct: 175 FGNPGGGGVKGIIGKENMMKECTQVLGKLMKHKSGWIFNTPVDAEALGLHDYHQIIKRPX 234
Query: 191 DLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQ 250
DLGT KS L+ N Y TP EFA DV+LTF NAL YNPK V+ A QLL +FE+++RPIQ
Sbjct: 235 DLGTXKSNLSNNFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMFRPIQ 294
Query: 251 EKFDE-------KSFD--DELQASSWNHVEPERERERVKKKDNPIPIPPP-VAKRQELLP 300
+K ++ + F DELQ SSWNH+ ERVKK P P P P ++K+QE +
Sbjct: 295 DKLNKLDGGSGRRDFHAIDELQGSSWNHIPTP---ERVKK---PKPTPAPHISKKQERMM 348
Query: 301 EPASTSNQPST------SNPPPLAQ-SPVRTPSPTRALP-----------VKPL-KQPKP 341
+ S+++ PS NPP + Q SP+ TPSP RA P V P+ KQPKP
Sbjct: 349 QNHSSASTPSLPVQQPPDNPPVVRQQSPLSTPSPVRAPPAAKPQSSVAAKVPPMGKQPKP 408
Query: 342 KARDPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDT 401
+A+DPNKREM++EEKHKLG+GLQ LP EKM Q+VQIIRKRN HL QDGDEIELD+EA+DT
Sbjct: 409 RAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDT 468
Query: 402 ETLWELDRLVTNWKKMVSKIKRQALMDNNNVP--SNKGNGELPDREKVDATPPSEGKK-- 457
ETLWELDR VTNWKKMVSK KRQAL++N P ++ +A PS +K
Sbjct: 469 ETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTSVAEADGPSTSEKND 528
Query: 458 -----QKKIDTVDE-DVDIGDDMPANDFPPVEIEKDKDMGGTGGRA----SSSSSGSSSS 507
+K D DE DV+I DD PA FPPVEIE DKD GG GG+ +SSSS SSSS
Sbjct: 529 SFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDKDEGGGGGQVRDNNASSSSSSSSS 588
Query: 508 GSGDSSSSETS 518
S DSSSS S
Sbjct: 589 SSSDSSSSSDS 599
>emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Nicotiana
benthamiana]
Length = 613
Score = 477 bits (1227), Expect = e-133
Identities = 305/610 (50%), Positives = 371/610 (60%), Gaps = 107/610 (17%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYA------NPNPNPKFKRNQ----------- 43
MASAVLA+RNE +W Q G G GFMGK PY+ N NPNPK K+ Q
Sbjct: 1 MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTHLNPNSNPNPKKKQKQFHHASNGCHND 60
Query: 44 -------SPSDDASSINRR-----SNDVVTNHSQYVTFNVSSYSKSELNELRNCFVTELE 91
+ SDDA S N+R +N N Y+T+NV+SYSK+EL++LR+ V ELE
Sbjct: 61 ELPAVTQTASDDAYSFNQRPIESSANVDGLNLGGYMTYNVASYSKTELHDLRSRLVAELE 120
Query: 92 QIRQLQTRIESGELKSRSSHNGGGSAKKSANKKFSGNKRPFPA--EKELKRSKSEVGSA- 148
QIR L+ RIESG+L + + + G S KK SGNKRP P+ K+ K+ + V +
Sbjct: 121 QIRNLKDRIESGQLSTSNPRSHGKS------KKLSGNKRPTPSGSSKDPKKLPNGVDNRN 174
Query: 149 ------------------MKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPM 190
MK C Q+L KLMK K GWIF++PVD AL LHDY IIK PM
Sbjct: 175 FGNPGGGGVKGIIGMENMMKECRQVLGKLMKHKSGWIFNTPVDAEALGLHDYRQIIKRPM 234
Query: 191 DLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQ 250
DLGTVKS L+ N Y TP EFA DV+LTF NAL YNPK V+ A LL +FE+++RP Q
Sbjct: 235 DLGTVKSNLSNNLYPTPFEFAADVRLTFNNALLYNPKTDQVHVFAELLLTRFEDMFRPFQ 294
Query: 251 EKFDE-------KSFD--DELQASSWNHVEPERERERVKKKDNPIPIPPP-VAKRQELLP 300
+K ++ + F DELQ SSWNH+ ERVKK P P P P ++K+QE +
Sbjct: 295 DKLNKLDGGSGRRDFHAIDELQGSSWNHIPTP---ERVKK---PKPTPAPHISKKQERMM 348
Query: 301 EPASTSNQPST------SNPPPLAQ-SPVRTPSPTRALP-----------VKPL-KQPKP 341
+ S+++ PS NPP + Q SP+ TPSP RA P V P+ KQPKP
Sbjct: 349 QNHSSASTPSLPVQQPPDNPPVVQQQSPLSTPSPVRAPPAAKPQSSVAAKVPPMEKQPKP 408
Query: 342 KARDPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDT 401
+A+DPNKREM++EEKHKLG+GLQ LP EKM Q+VQIIRKRN HL QDGDEIELD+EA+DT
Sbjct: 409 RAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDT 468
Query: 402 ETLWELDRLVTNWKKMVSKIKRQALMDN-NNVPSNKGNGELPDREKVDATPPSEGKK--- 457
ETLWELDR VTNWKKMVSK KRQAL++N PS +A PS +K
Sbjct: 469 ETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTSVAEADGPSTSEKNDS 528
Query: 458 ----QKKIDTVDE-DVDIGDDMPANDFPPVEIEKDKDMGGTGGR-----ASSSSSGSSSS 507
+K D DE DV+I DD PA FPPVEI DKD GG GGR ASSSSS SSSS
Sbjct: 529 FKKPKKGGDAGDEDDVEIEDDEPATQFPPVEI--DKDEGGGGGRDPDNNASSSSSSSSSS 586
Query: 508 GSGDSSSSET 517
S SSSS++
Sbjct: 587 SSDSSSSSDS 596
>emb|CAD43284.1| bromodomain-containing RNA-binding protein 1 [Nicotiana
benthamiana]
Length = 615
Score = 465 bits (1196), Expect = e-129
Identities = 298/610 (48%), Positives = 365/610 (58%), Gaps = 105/610 (17%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYA----NPNPNPKFKRNQ------------- 43
MASAVLA+RNE +W Q G G GFMGK PY+ NPN NPK K+ Q
Sbjct: 1 MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTHLNPNSNPKPKKKQKQFHHASNGRQND 60
Query: 44 -------SPSDDASSINRRSNDVVTNHSQ-----YVTFNVSSYSKSELNELRNCFVTELE 91
+ SDDA S N+R + TN Y+T+NV+SY+K+EL+ELR+ V ELE
Sbjct: 61 ESPAVTQTASDDAYSFNQRPIESSTNVDGLNLGGYMTYNVASYNKTELHELRSRLVAELE 120
Query: 92 QIRQLQTRIESGELKSRSSHNGGGSAKKSANKKFSGNKRPFPA--EKELKRSKSEVGSA- 148
QIR L+ RIESG+L + + + G S KK SGNKR P+ K+ K+ + V +
Sbjct: 121 QIRSLKDRIESGQLSTSNPRSHGKS------KKLSGNKRATPSGSSKDPKKLPNGVDNRN 174
Query: 149 ------------------MKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPM 190
MK C Q+L KLMK K GWIF++PVD AL LHDY IIK PM
Sbjct: 175 FGNPGGVGVKGIIGMENMMKECRQVLGKLMKHKSGWIFNTPVDAEALGLHDYHQIIKRPM 234
Query: 191 DLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQ 250
DLGTVKS L+ Y TP EFA DV+LTF NAL YNPK V+ A QLL +FE+++RPIQ
Sbjct: 235 DLGTVKSNLSNCFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMFRPIQ 294
Query: 251 EKF-------DEKSFD--DELQASSWNHVEPERERERVKKKDNPIPIPPP-VAKRQELLP 300
+K D + F DELQ SWNH+ ERVKK P P P P ++K+QE +
Sbjct: 295 DKLNKLDGGSDRRDFHPTDELQGISWNHIPTP---ERVKK---PKPTPAPHISKKQERMM 348
Query: 301 EPASTS-----NQPSTSNPPPLAQSPVRTPSPTRALP-----------VKPL-KQPKPKA 343
+ S++ QP + P QS + TPSP RA P V P+ KQPKP+A
Sbjct: 349 QNHSSALTLPVQQPPDNTPVVRQQSLLSTPSPVRAPPAPKPQSSVAAKVPPMGKQPKPRA 408
Query: 344 RDPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTET 403
+DPNKREM++EEKHKLG+GLQ LP EKM Q+VQIIRKRN HL QDGDEIELD+EA+DTET
Sbjct: 409 KDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTET 468
Query: 404 LWELDRLVTNWKKMVSKIKRQALMDNNNVP--SNKGNGELPDREKVDATPPSEGKK---- 457
LWELDR VTNWKKMVSK KRQAL++N P ++ +A PS +K
Sbjct: 469 LWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTSVAEADAPSTSEKNDSF 528
Query: 458 ---QKKIDTVDE-DVDIGDDMPANDFPPVEIEKDKDMGGTG------GRASSSSSGSSSS 507
+K D DE DV+I DD PA FPPVEI+KD+ GG G ASSSSS SSSS
Sbjct: 529 KKPKKGGDAGDEDDVEIEDDEPATHFPPVEIDKDEGGGGGGVGQDRDNNASSSSSSSSSS 588
Query: 508 GSGDSSSSET 517
S SSSS++
Sbjct: 589 SSDSSSSSDS 598
>gb|AAP40447.1| unknown protein [Arabidopsis thaliana] gi|42568797|ref|NP_201366.3|
DNA-binding bromodomain-containing protein [Arabidopsis
thaliana]
Length = 590
Score = 382 bits (980), Expect = e-104
Identities = 237/584 (40%), Positives = 309/584 (52%), Gaps = 89/584 (15%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGK------------VPYANPNPNPKFKRNQSPS-- 46
MA AV A NEP++ + G A FM K +P NPNPNP F+R+ S
Sbjct: 1 MAPAVFATLNEPSYQEQCG--AVFMRKFTNQSVTENTNNLPLFNPNPNPNFERSNSSKQC 58
Query: 47 DDASSINRRSNDVVTNHSQYVTFNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELK 106
DD+S Y TFN++ Y+ S+L EL+ F +EL+QIR L+ RIESG +
Sbjct: 59 DDSSEFG-----------SYATFNLAGYTSSQLRELKKRFTSELKQIRILRERIESGTFE 107
Query: 107 SRSSH--------------------NGGGSAKKSANKKFSGNKRPFPAEKELKRSKSEVG 146
++ + N G KK K SG KR S+ +
Sbjct: 108 TQQGYTIPEVPAVRSAPLNNFTGEKNDLGPKKKKQKKNVSGLKRSNQFGPSDPESEKLLA 167
Query: 147 SAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYST 206
+ C QIL KLMK K W+F++PVD V L LHDY ++K PMDLGTVK L K Y +
Sbjct: 168 GMLNTCSQILVKLMKHKWAWVFNTPVDVVGLGLHDYHQVVKKPMDLGTVKLNLDKGFYVS 227
Query: 207 PAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFD------------ 254
P +FA DV+LTF NA+TYNPKG DV A +LL+ F+ ++ P +KF+
Sbjct: 228 PIDFATDVRLTFDNAMTYNPKGQDVYFMADKLLDHFDGMFNPAFKKFEAQQLKLTGSSSR 287
Query: 255 -EKSFDDELQASSWNH-----VEPERERERVKKKDNPIPIPPPVAKRQELLPEPASTSNQ 308
E F + + WN P + E++ + PP L EP+ +
Sbjct: 288 PEPDFKPDFKQRQWNQNPPMVANPRKGTEQISIAKKLDSVKPPQPTLPPQLVEPSRVQS- 346
Query: 309 PSTSNPPPLAQSPVRTPSP---------------TRALPVKPLKQPKPKARDPNKREMNV 353
PS PPP+ Q + P P + + K PKPKA+DPNKR M +
Sbjct: 347 PSPPPPPPVIQPELPQPQPPPPQLEIEVEAPPDVSEVSKGRKGKLPKPKAKDPNKRLMTM 406
Query: 354 EEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTN 413
EEK KLG+ LQ LPPEK+ Q++QI+RKRNGHL QDGDEIELD+EAVD ETLWELDR VTN
Sbjct: 407 EEKSKLGMNLQDLPPEKLGQLLQILRKRNGHLAQDGDEIELDIEAVDNETLWELDRFVTN 466
Query: 414 WKKMVSKIKRQALMDNNNVPSNKGNGELPDREKVDATPPSEGKKQKKIDTVDEDVDIGDD 473
+KKM SKIKRQ + N + P P A S K+ ++ D +EDVDIG+D
Sbjct: 467 YKKMASKIKRQGFIRNVSTP--------PRNMASVAEMGSAEKRTRRGDAGEEDVDIGED 518
Query: 474 MPANDFPPVEIEKDKDMGGTGGRASSSSSGSSSSGSGDSSSSET 517
+P D+P VEIE+D + SSSSGSSSS G SSSS++
Sbjct: 519 IPIEDYPSVEIERDGTAVAAAASSGSSSSGSSSSSGGSSSSSDS 562
>dbj|BAA98182.1| unnamed protein product [Arabidopsis thaliana]
Length = 643
Score = 380 bits (977), Expect = e-104
Identities = 237/582 (40%), Positives = 307/582 (52%), Gaps = 89/582 (15%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGK------------VPYANPNPNPKFKRNQSPS-- 46
MA AV A NEP++ + G A FM K +P NPNPNP F+R+ S
Sbjct: 56 MAPAVFATLNEPSYQEQCG--AVFMRKFTNQSVTENTNNLPLFNPNPNPNFERSNSSKQC 113
Query: 47 DDASSINRRSNDVVTNHSQYVTFNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELK 106
DD+S Y TFN++ Y+ S+L EL+ F +EL+QIR L+ RIESG +
Sbjct: 114 DDSSEFG-----------SYATFNLAGYTSSQLRELKKRFTSELKQIRILRERIESGTFE 162
Query: 107 SRSSH--------------------NGGGSAKKSANKKFSGNKRPFPAEKELKRSKSEVG 146
++ + N G KK K SG KR S+ +
Sbjct: 163 TQQGYTIPEVPAVRSAPLNNFTGEKNDLGPKKKKQKKNVSGLKRSNQFGPSDPESEKLLA 222
Query: 147 SAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYST 206
+ C QIL KLMK K W+F++PVD V L LHDY ++K PMDLGTVK L K Y +
Sbjct: 223 GMLNTCSQILVKLMKHKWAWVFNTPVDVVGLGLHDYHQVVKKPMDLGTVKLNLDKGFYVS 282
Query: 207 PAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFD------------ 254
P +FA DV+LTF NA+TYNPKG DV A +LL+ F+ ++ P +KF+
Sbjct: 283 PIDFATDVRLTFDNAMTYNPKGQDVYFMADKLLDHFDGMFNPAFKKFEAQQLKLTGSSSR 342
Query: 255 -EKSFDDELQASSWNH-----VEPERERERVKKKDNPIPIPPPVAKRQELLPEPASTSNQ 308
E F + + WN P + E++ + PP L EP+ +
Sbjct: 343 PEPDFKPDFKQRQWNQNPPMVANPRKGTEQISIAKKLDSVKPPQPTLPPQLVEPSRVQS- 401
Query: 309 PSTSNPPPLAQSPVRTPSP---------------TRALPVKPLKQPKPKARDPNKREMNV 353
PS PPP+ Q + P P + + K PKPKA+DPNKR M +
Sbjct: 402 PSPPPPPPVIQPELPQPQPPPPQLEIEVEAPPDVSEVSKGRKGKLPKPKAKDPNKRLMTM 461
Query: 354 EEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTN 413
EEK KLG+ LQ LPPEK+ Q++QI+RKRNGHL QDGDEIELD+EAVD ETLWELDR VTN
Sbjct: 462 EEKSKLGMNLQDLPPEKLGQLLQILRKRNGHLAQDGDEIELDIEAVDNETLWELDRFVTN 521
Query: 414 WKKMVSKIKRQALMDNNNVPSNKGNGELPDREKVDATPPSEGKKQKKIDTVDEDVDIGDD 473
+KKM SKIKRQ + N + P P A S K+ ++ D +EDVDIG+D
Sbjct: 522 YKKMASKIKRQGFIRNVSTP--------PRNMASVAEMGSAEKRTRRGDAGEEDVDIGED 573
Query: 474 MPANDFPPVEIEKDKDMGGTGGRASSSSSGSSSSGSGDSSSS 515
+P D+P VEIE+D + SSSSGSSSS G SSSS
Sbjct: 574 IPIEDYPSVEIERDGTAVAAAASSGSSSSGSSSSSGGSSSSS 615
>emb|CAB89388.1| bromodomain protein-like [Arabidopsis thaliana]
gi|15238195|ref|NP_196617.1| DNA-binding
bromodomain-containing protein [Arabidopsis thaliana]
gi|11357202|pir||T49984 bromodomain protein-like -
Arabidopsis thaliana
Length = 678
Score = 348 bits (892), Expect = 3e-94
Identities = 232/572 (40%), Positives = 310/572 (53%), Gaps = 63/572 (11%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKV---PYANPNPNPKFKRNQSPSDDASSINRRSN 57
MA AVLAN NEP + G A FM K P + NP F N +P+ ++ N S
Sbjct: 76 MAPAVLANLNEPLFLGQCG--AVFMRKYTNQPLSGDINNPLFNPNPNPNSISAYGNNSSK 133
Query: 58 --DVVTNHSQYVTFNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELKSRSSH---- 111
D + + YV+F++ Y+ ++L EL+ +ELE++R L+ RIESG S S +
Sbjct: 134 HFDDSSAYGDYVSFDLDGYTSNQLRELKKRLNSELEEVRFLRERIESGTFVSGSVYTTQA 193
Query: 112 -------NGGGSAKKSANKKFSGN----KRPFPA-EKELKR-------SKSEVGSAMKAC 152
N G K KK G+ PF E LKR S+ + S M C
Sbjct: 194 RSFAGETNDVGVKKTKTKKKKIGHGQKRSNPFATDEPSLKRHVALDLMSEKVLKSMMTTC 253
Query: 153 GQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFAD 212
GQIL KLMK K W+F +PVD V L LHDY I+ PMDLGTVK L K Y +P +FA
Sbjct: 254 GQILVKLMKHKWSWVFLNPVDVVGLGLHDYHRIVDKPMDLGTVKMNLEKGLYRSPIDFAS 313
Query: 213 DVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFDEKSF-----------DDE 261
DV+LTF NA++YNPKG DV A +LL +F+ + P ++F+ + +D
Sbjct: 314 DVRLTFTNAMSYNPKGQDVYLMAEKLLSQFDVWFNPTLKRFEAQEVKVMGSSSRPGPEDN 373
Query: 262 LQASSWNHVEPERER--ERV---KKKDNPIPI-----PPPVAKRQELLPEPASTSNQPST 311
+ + N+V + E++ KK D+ P+ PPPV + P S P
Sbjct: 374 QRVWNQNNVAENARKGPEQISIAKKLDSVKPLLPTLPPPPVIEITRDPSPPPSPVQPPPP 433
Query: 312 SNPPPLAQSPVRTPSPTRALPV-KPLKQPKPKARDPNKREMNVEEKHKLGLGLQILPPEK 370
+PPP + V R + K PKPKA+DPNKREM ++EK KLG+ LQ LPPEK
Sbjct: 434 PSPPPQPVNQVEASLEVRETNKGRKGKLPKPKAKDPNKREMTMDEKGKLGVNLQELPPEK 493
Query: 371 MEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTNWKKMVSKIKRQALMDNN 430
+ Q++QI+RKR L QDGDEIELD+EA+D ETLWELDR VTN++KM SKIKRQ + N
Sbjct: 494 LGQLIQILRKRTRDLPQDGDEIELDIEALDNETLWELDRFVTNYRKMASKIKRQGFIQNV 553
Query: 431 NVPSNKGNGELPDREKVDATPPSEGKKQKKIDTVDEDVDIGDDMPANDFPPVEIEKD--- 487
+ P + V +E + +K + +EDVDIG+D+P D+P VEIE+D
Sbjct: 554 STPPR-------NMPPVTEMGSAEKRGRKGGEAGEEDVDIGEDIPVEDYPSVEIERDGTA 606
Query: 488 -KDMGGTGGRASSSSSGSSSSGSGDSSSSETS 518
GG+ S SSSGSSSS +S SS S
Sbjct: 607 AAASGGSSSSGSFSSSGSSSSSDSESGSSSGS 638
>emb|CAD13175.1| viroid RNA-binding protein [Lycopersicon esculentum]
Length = 313
Score = 275 bits (704), Expect = 2e-72
Identities = 164/305 (53%), Positives = 194/305 (62%), Gaps = 40/305 (13%)
Query: 246 YRPIQEKFDEKSFD-------DELQASSWNHVE-PERERERVKKKDNPIPIPPPVAKRQE 297
+RP+Q+K ++ DELQ SSWNH+ PER KK P P+P ++K+QE
Sbjct: 1 FRPLQDKMNKLEGGRRDYHPVDELQGSSWNHIPTPERV-----KKPKPTPVPN-ISKKQE 54
Query: 298 LLPEPASTSNQPSTS----NPPPLAQSPVRTPSPTRALPVKPL---------KQPKPKAR 344
+ +S S PS NPP QSP+ TPSP RA KP KQPKP+A+
Sbjct: 55 RMQNHSSAST-PSLPVPPPNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAK 113
Query: 345 DPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETL 404
DPNKREMN+EEKHKLG+GLQ LP EKM Q+VQIIRKRN HL QDGDEIELD+EA+DTETL
Sbjct: 114 DPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGDEIELDIEALDTETL 173
Query: 405 WELDRLVTNWKKMVSKIKRQALMDNNNVPSNKGNGELPDREKVDATPPSEG------KKQ 458
WELDR VTNWKKMVSK KRQALM+N PS +A P+ KK
Sbjct: 174 WELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEADGPTTSEKNDSFKKA 233
Query: 459 KKIDTVDEDVDIGDDMPANDFPPVEIEK------DKDMGGTGGRASSSSSGSSSSGSGDS 512
KK D +EDV+I DD PA FPPVEIEK D++ GG GG +SSSSS SSSSGS S
Sbjct: 234 KKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGSSSSSSSSSSSSGSSSS 293
Query: 513 SSSET 517
S S++
Sbjct: 294 SDSDS 298
>ref|XP_473938.1| OSJNBb0085C12.15 [Oryza sativa (japonica cultivar-group)]
gi|38345713|emb|CAD41835.2| OSJNBb0085C12.15 [Oryza
sativa (japonica cultivar-group)]
gi|38344165|emb|CAE03496.2| OSJNBa0053K19.4 [Oryza
sativa (japonica cultivar-group)]
Length = 456
Score = 258 bits (658), Expect = 5e-67
Identities = 192/535 (35%), Positives = 263/535 (48%), Gaps = 104/535 (19%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYANPNPNPKFKRNQSPSDDASSINRRSNDVV 60
MASA+LA R N H + P A PN SD + +R+N
Sbjct: 1 MASALLAGRGGVNHHHHHHQWGET--RAPLAPVAPN---------SDPNHPLQQRANGSA 49
Query: 61 TNH--SQYVTFNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNGGGSAK 118
T S YV + + E LR+ EL Q+R L RI++ + G K
Sbjct: 50 TRPPPSSYVALRPGAMAHREARALRDRLAGELGQVRALIARIDTWQQ---------GQVK 100
Query: 119 KSANKKFSGNKRPFPAEKELKRSKSEVGSAM-KACGQILQKLMKTKIGWIFSSPVDPVAL 177
+ + + ++L +++ +AM K C QIL KL K K F++PV+ L
Sbjct: 101 RHGSPR-----------RDLPTPPAKLRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRL 149
Query: 178 NLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQ 237
LHDY +IK PMDLGTV++ LA Y + +FA DV+LTF NAL YNP GH+V+T A
Sbjct: 150 GLHDYHAVIKCPMDLGTVRANLAAGRYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGD 209
Query: 238 LLEKFEELYRPIQEKFDEKSFDDELQASSWNHVEPERERERVKKKDNPIPIPPPVAKRQE 297
LL FE++Y+ F+++ +K + P+P+PPP E
Sbjct: 210 LLASFEKMYKASMSWFEQE----------------------LKLLEPPMPVPPP-----E 242
Query: 298 LLPEPASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPLKQPKPKARDPNKREMNVEEKH 357
L P A +P +N +K KPKAR+PNKR+M +EEK+
Sbjct: 243 LPPATAPVQVKPRAAN----------------------VKMRKPKAREPNKRDMTLEEKN 280
Query: 358 KLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTNWKKM 417
L +GL+ LP EKM V+QI+RKRNG+ E G EIELD++ +D ET WELDR V N+KK
Sbjct: 281 LLRVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKKA 340
Query: 418 VSKIKRQALMDNNNVP------SNKG----NGELPDR-EKVDATPPSEGKKQKKIDT--- 463
++K +R A+++ N +N NG + D T E K KI T
Sbjct: 341 LNKSRRAAIVNGENADVIDASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAE 400
Query: 464 -VDEDVDIGDDMPANDFPPVEIEKDKDMGGTGGRASSSSSGSSSSGSGDSSSSET 517
+DE VDIGD+MP + VEIEKD + ASS SS SS SGS S SE+
Sbjct: 401 QLDEYVDIGDEMPTATYQSVEIEKDTE------AASSGSSSSSDSGSSKDSVSES 449
>ref|XP_507570.1| PREDICTED OSJNBa0056O06.23 gene product [Oryza sativa (japonica
cultivar-group)] gi|50941927|ref|XP_480491.1| putative
RNA-binding protein Virp1a [Oryza sativa (japonica
cultivar-group)] gi|51964744|ref|XP_507156.1| PREDICTED
OSJNBa0056O06.23 gene product [Oryza sativa (japonica
cultivar-group)] gi|40253661|dbj|BAD05604.1| putative
RNA-binding protein Virp1a [Oryza sativa (japonica
cultivar-group)]
Length = 481
Score = 256 bits (653), Expect = 2e-66
Identities = 192/537 (35%), Positives = 256/537 (46%), Gaps = 86/537 (16%)
Query: 1 MASAVLANRNEPNWPQHRGGGAGFMGKVPYANPNPNPKFKRNQSPSDDASSINRRSNDVV 60
M SAVLA RNE + H + +P NPNP+ SPS +R
Sbjct: 1 MTSAVLAGRNEVHHHHHHHWADARVPLMPKHATNPNPRRHHRPSPSIPPPPPPQRPPAAT 60
Query: 61 T-------NHSQYVTFNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNG 113
+ S +VT S S+ E LR EL ++R L + I+ E + R
Sbjct: 61 VAPSVPDPSPSGHVTIRPSELSRREAQVLRARLTGELSRVRALLSDIDGWEARRR----- 115
Query: 114 GGSAKKSANKKFSGNKRPFPAEKELKRSKSEVGSAMKACGQILQKLMKTKIGWIFSSPVD 173
+ + + G+ P PA + R K C QIL +L K KI F+SPVD
Sbjct: 116 ----RPAEPPRQRGHVSPPPALQAAMR---------KRCTQILTRLRKQKISVWFNSPVD 162
Query: 174 PVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNT 233
L LHDY II++PMDLGTVK LA Y + FA DV+LTF NAL YNP H V+
Sbjct: 163 VERLKLHDYHAIIRNPMDLGTVKENLAFGRYPSHEAFATDVRLTFSNALRYNPADHHVHR 222
Query: 234 AAMQLLEKFEELYRPIQEKFDEKSFDDELQASSWNHVEPERERERVKKKDNPIPIPPPVA 293
A LL FE LY+ +A SW E +R + P+ +PPP
Sbjct: 223 YASNLLATFEGLYK---------------EALSWFEQECQRLEPPM-----PLALPPP-- 260
Query: 294 KRQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPLKQPKPKARDPNKREMNV 353
P P P+ Q+P R R +PKPKAR+PNKREM+
Sbjct: 261 ---------------PQPPVPMPM-QAPPRIGGGGR--------RPKPKAREPNKREMSD 296
Query: 354 EEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTN 413
EEKHKL + + LP EKM V+QI++KRN G+ +ELD + +D ETLWELDR V N
Sbjct: 297 EEKHKLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVN 356
Query: 414 WKKMVSKIKRQALMDNNNVPSNKGNGELPDREKV------------DATPPSEGKKQKKI 461
KK +SK +R M+ + V + D +V D+ + K+ ++
Sbjct: 357 CKKALSKSRRTVAMNGDAVDATAIVPTEDDTVQVNVHHQPSVVEIGDSENDTPEKRVSEV 416
Query: 462 DTVDEDVDIGDDMPANDFPPVEIEKDKDMGGTGGRASSSSSGSSSSGSGDSSSSETS 518
D VDE VDIGD+MP ++ VEIE+D + + +S S SGSS+S DS SS S
Sbjct: 417 DMVDEYVDIGDEMPTANYQSVEIERDAQVASS---SSGSDSGSSASSDSDSRSSGDS 470
>ref|NP_849601.1| DNA-binding bromodomain-containing protein [Arabidopsis thaliana]
gi|15221424|ref|NP_172113.1| DNA-binding
bromodomain-containing protein [Arabidopsis thaliana]
gi|25406905|pir||A86198 hypothetical protein [imported]
- Arabidopsis thaliana gi|8844128|gb|AAF80220.1|
Contains similarity to a Ring3 protein from Homo sapiens
gi|133157 and contains a bromodomain PF|00439. EST
gb|F14211 comes from this gene. [Arabidopsis thaliana]
Length = 766
Score = 236 bits (602), Expect = 1e-60
Identities = 164/412 (39%), Positives = 228/412 (54%), Gaps = 60/412 (14%)
Query: 127 GNKRPFPAEKELKRSKS-------EVG-------SAMKACGQILQKLMKTKIGWIFSSPV 172
G+K P PAE K+SKS +VG K C +L++LMK K GW+F++PV
Sbjct: 388 GDKLP-PAESN-KKSKSSSKKQGGDVGHGFGAGTKVFKNCSALLERLMKHKHGWVFNAPV 445
Query: 173 DPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVN 232
D L L DY+ II+HPMDLGT+KS L KN Y +P EFA+DV+LTF NA+TYNP+G DV+
Sbjct: 446 DVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPREFAEDVRLTFHNAMTYNPEGQDVH 505
Query: 233 TAAMQLLEKFEELYRPIQEKFDEKSFDDELQASSWNHVEPERERERVKKKDNPIPIPPPV 292
A+ LL+ FEE + I E ++ E++ + E ++ + P PPP+
Sbjct: 506 LMAVTLLQIFEERWAVI-----EADYNREMRFVT--GYEMNLPTPTMRSRLGPTMPPPPI 558
Query: 293 AKRQELLPEPASTSNQPSTSNP---PPLAQSPVRTPSPTRALPVKPLKQPKPKARDPNKR 349
R + + A SN+ T+ P P A RTP+ LK KPKA +PNKR
Sbjct: 559 NVRNTI--DRADWSNRQPTTTPGRTPTSATPSGRTPA---------LK--KPKANEPNKR 605
Query: 350 EMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDR 409
+M EEK KL LQ LPP+K++ +VQI+ KRN ++ +EIE+D+++VD ETLWELDR
Sbjct: 606 DMTYEEKQKLSGHLQNLPPDKLDAIVQIVNKRNTAVKLRDEEIEVDIDSVDPETLWELDR 665
Query: 410 LVTNWKKMVSKIKRQALMDNNNVPSNKGNGELPDREKVDATPPSEGKKQKKIDTVDEDVD 469
VTN+KK +SK KR+A EL + + +A S+ ++ E
Sbjct: 666 FVTNYKKGLSKKKRKA--------------ELAIQARAEAERNSQ-QQMAPAPAAHEFSR 710
Query: 470 IGDDMPANDFP---PVEIEKDKDMGGTGGRASSSSSGSSSSGSGDSSSSETS 518
G + P P ++EK + R+SSSSS SSSS S DS S +S
Sbjct: 711 EGGNTAKKTLPTPLPSQVEKQNN---ETSRSSSSSSSSSSSSSSDSDSDSSS 759
>gb|AAV84477.1| At1g73150 [Arabidopsis thaliana] gi|15219397|ref|NP_177458.1|
DNA-binding bromodomain-containing protein [Arabidopsis
thaliana] gi|12324313|gb|AAG52122.1| hypothetical
protein; 61711-63380 [Arabidopsis thaliana]
gi|5903104|gb|AAD55662.1| Highly similar to non
intermediate filament IFA binding protein [Arabidopsis
thaliana] gi|25406254|pir||D96757 hypothetical protein
T18K17.19 [imported] - Arabidopsis thaliana
Length = 461
Score = 235 bits (599), Expect = 3e-60
Identities = 172/488 (35%), Positives = 240/488 (48%), Gaps = 64/488 (13%)
Query: 46 SDDASSINRRSNDVVTNHS--------QYVTFNVSSYSKSELNELRNCFVTELEQIRQLQ 97
SD + +RS V N + Q + ++SS SK E+ L+ ELE++R L
Sbjct: 19 SDSGNKSQKRSKPTVANSNSLGLEDNHQMMKISLSSISKLEVRNLKRKLQAELEEVRSLI 78
Query: 98 TRIESGELKSRSSHNGGGSAKKSANKKFSGNKRPFPAEKELKRSKSEVGSAMKACGQILQ 157
R+E N K+AN G A+K + +K+C +L
Sbjct: 79 KRLEPQGNNFAPVPN---KKLKTANGGKKGGVHGAAADKGTVQ-------ILKSCNNLLT 128
Query: 158 KLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLT 217
KLMK K GWIF++PVD V L LHDY +IIK PMDLGTVK++L+K+ Y +P EFA+DV+LT
Sbjct: 129 KLMKHKSGWIFNTPVDVVTLGLHDYHNIIKEPMDLGTVKTRLSKSLYKSPLEFAEDVRLT 188
Query: 218 FKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFDEKSFDDELQASSWNHVEPERERE 277
F NA+ YNP GHDV A LL FEE + P++ +++ R+++
Sbjct: 189 FNNAMLYNPVGHDVYHMAEILLNLFEEKWVPLETQYELLI----------------RKQQ 232
Query: 278 RVKKKDNPIPIPPPVAKRQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTRAL--PVKP 335
V+ D P+ E LP PA T PS S PPP RT ++ PVKP
Sbjct: 233 PVRDIDFHAPVSTN-THNVEALPLPAPT---PSLSPPPPPKVVENRTLERAESMTNPVKP 288
Query: 336 LKQP----KPKARDPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDE 391
P K R++ +EK +L LQ LP +K+E VVQII+KR L Q DE
Sbjct: 289 AVLPVVPEKLVEEASANRDLTFDEKRQLSEDLQDLPYDKLEAVVQIIKKRTPELSQQDDE 348
Query: 392 IELDMEAVDTETLWELDRLVTNWKKMVSKIKRQALMDNNNVPSNKGNGELPDREKVDATP 451
IELD++++D ETLWEL R VT +K+ +SK K + +D+ + N V
Sbjct: 349 IELDIDSLDLETLWELFRFVTEYKESLSKKKEEQGLDSERDAESFHNSVHESNTLVTGLE 408
Query: 452 PSEGKKQKKI-DTVDEDVDIGDDMPANDFPPVEIEKDKDMGGTGGRASSSSSGSSSSGSG 510
S+ + + TV ++V++G G + +SSS SGS SSGS
Sbjct: 409 SSKVTELGHVASTVRQEVNVG-------------------GSSSSNSSSSGSGSGSSGSD 449
Query: 511 DSSSSETS 518
SS S
Sbjct: 450 SDSSGHES 457
>ref|NP_913322.1| putative PSTVd RNA-biding protein [Oryza sativa (japonica
cultivar-group)]
Length = 507
Score = 231 bits (590), Expect = 4e-59
Identities = 154/371 (41%), Positives = 192/371 (51%), Gaps = 42/371 (11%)
Query: 63 HSQYVTFNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNGGGSAKK--- 119
H + VTF++SS S + ELR EL Q+R R+ S + SS
Sbjct: 51 HVRTVTFSLSS-SPAARRELRRRLTAELAQVRATCKRLSSLPAPAPSSALSATDPSTPLP 109
Query: 120 -----SANKKFSGNKRPFPAEKELKRSKSEVGSAMKACGQILQKLMKTKIGWIFSSPVDP 174
S +K GN P R K K+CG +L +LMK K W+F++PVD
Sbjct: 110 PHPPVSKHKSKKGNPSSNPGLSAEARRKL-YAPVFKSCGALLARLMKHKHSWVFNTPVDA 168
Query: 175 VALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTA 234
AL LHDY II PMDLGTVKS+LA Y +P EFA DV+LTF+NA+ YNPKG DV+
Sbjct: 169 SALGLHDYHTIITKPMDLGTVKSRLAAGHYKSPREFAGDVRLTFQNAMRYNPKGQDVHFM 228
Query: 235 AMQLLEKFEELYRPIQEKFDEKSFDDELQASSWNHVEPERERERVKKKDNPIPIPPPVAK 294
A QLL FEE + PE E E + P P P A
Sbjct: 229 AEQLLNMFEEKW-------------------------PEIEAEVAQLSPQP-PTPSSAAP 262
Query: 295 RQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTRALPVKPLKQPKPKARDPNKREMNVE 354
R+ P+ S S+ A TP +P KPKAR+PNKREM
Sbjct: 263 RK---PKEIDNSKVLERSDSTVHAAGMEATPKQNTG---RPPVLKKPKAREPNKREMTFW 316
Query: 355 EKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTNW 414
EK +L LQ LPPEK++ VVQII+KRN L Q DEIE+D+++ D ETLWELDR VTN+
Sbjct: 317 EKQRLSNNLQELPPEKLDNVVQIIKKRNLSLSQHDDEIEVDIDSFDVETLWELDRFVTNY 376
Query: 415 KKMVSKIKRQA 425
KK +SK KR+A
Sbjct: 377 KKSISKNKRKA 387
>gb|AAN13019.1| unknown protein [Arabidopsis thaliana] gi|18394534|ref|NP_564037.1|
DNA-binding bromodomain-containing protein [Arabidopsis
thaliana]
Length = 487
Score = 219 bits (557), Expect = 2e-55
Identities = 171/521 (32%), Positives = 245/521 (46%), Gaps = 73/521 (14%)
Query: 19 GGGAGFMGKVPYANPNPNPKFKRNQSPSDDASSINRRSNDVVTNHSQYVT-FNVSSYSKS 77
GGGA K +++ PK S + + + SN + ++ ++SS SK
Sbjct: 8 GGGASKTKKHKWSSSQNRPK-PMGVSRQERSVPLVSPSNSFASEDDHHMLKISLSSISKL 66
Query: 78 ELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNGG--GSAKKSANKKFSGNKRPFPAE 135
E+ L+ +EL+++R L R + S G G +KK G K A+
Sbjct: 67 EVRNLKRKLKSELDEVRSLIKRFDPEANPGGSMAKSGVVGRSKKVKTGNGGGKKSGHGAD 126
Query: 136 KELKRSKSEVGSAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTV 195
K + K C +L KLMK K W+F+ PVD L LHDY +I+K PMDLGTV
Sbjct: 127 KGTVQ-------IFKNCNSLLTKLMKHKSAWVFNVPVDAKGLGLHDYHNIVKEPMDLGTV 179
Query: 196 KSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFDE 255
K+KL K+ Y +P +FA+DV+LTF NA+ YNP GHDV A LL FE+ + I+ ++D
Sbjct: 180 KTKLGKSLYKSPLDFAEDVRLTFNNAILYNPIGHDVYRFAELLLNMFEDKWVSIEMQYD- 238
Query: 256 KSFDDELQASSWNHVEPERERERVKKKDNPIPIP-PPVAKRQELLPEPASTSNQPSTSNP 314
R+ +D P P P +A E LP + PS S+P
Sbjct: 239 -----------------NLHRKFKPTRDIEFPAPAPSIAPIVEPLP---AIVPSPSPSSP 278
Query: 315 PPLAQSPVRTP---------SPTRALPVKP---LKQPKPKARDP---NKREMNVEEKHKL 359
PP PV P + +PV+P + P+ + N R++ +EEK +L
Sbjct: 279 PPPPPPPVAAPVLENRTWEREESMTIPVEPEAVITAPEKAEEEEAPVNNRDLTLEEKRRL 338
Query: 360 GLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTNWKKMVS 419
LQ LP +K+E VVQII+K N L Q DEIELD++++D TLWEL R VT +K+ +S
Sbjct: 339 SEELQDLPYDKLETVVQIIKKSNPELSQKDDEIELDIDSLDINTLWELYRFVTGYKESLS 398
Query: 420 KIKRQALMDNNNVPSNKGNGELPDREKV-----DATPPSEGKKQKKIDTVDEDVDIGDDM 474
K K +A G G D E V + T G ++ + I
Sbjct: 399 K-KNEA----------HGFGSERDAESVHNSIQEPTTLVSGTTTSRV--TESGKAIRTSS 445
Query: 475 PANDFPPVEIEKDKDMGGTGGRASSSSSGSSSSGSGDSSSS 515
PA +++ G + +SSS SGS SS + SSS
Sbjct: 446 PAR-------QENNASGSSSSNSSSSDSGSCSSDTDSDSSS 479
>gb|AAL07107.1| unknown protein [Arabidopsis thaliana]
Length = 487
Score = 218 bits (554), Expect = 5e-55
Identities = 171/521 (32%), Positives = 244/521 (46%), Gaps = 73/521 (14%)
Query: 19 GGGAGFMGKVPYANPNPNPKFKRNQSPSDDASSINRRSNDVVTNHSQYVT-FNVSSYSKS 77
GGGA K +++ PK S + + + SN + ++ ++SS SK
Sbjct: 8 GGGASKTKKHKWSSSQNRPK-PMGVSRQERSVPLVSPSNSFASEDDHHMLKISLSSISKL 66
Query: 78 ELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNGG--GSAKKSANKKFSGNKRPFPAE 135
E+ L+ +EL+++R L R + S G G +KK G K A+
Sbjct: 67 EVRNLKRKLKSELDEVRSLIKRFDPEANPGGSMAKSGVVGRSKKVKTGNGGGKKSGHGAD 126
Query: 136 KELKRSKSEVGSAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTV 195
K + K C +L KLMK K W+F+ PVD L LHDY +I+K PMDLGTV
Sbjct: 127 KGTVQ-------IFKNCNSLLTKLMKHKSAWVFNVPVDAKGLGLHDYHNIVKEPMDLGTV 179
Query: 196 KSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFDE 255
K KL K+ Y +P +FA+DV+LTF NA+ YNP GHDV A LL FE+ + I+ ++D
Sbjct: 180 KIKLGKSLYKSPLDFAEDVRLTFNNAILYNPIGHDVYRFAELLLNMFEDKWVSIEMQYD- 238
Query: 256 KSFDDELQASSWNHVEPERERERVKKKDNPIPIP-PPVAKRQELLPEPASTSNQPSTSNP 314
R+ +D P P P +A E LP + PS S+P
Sbjct: 239 -----------------NLHRKFKPTRDIEFPAPAPSIAPIVEPLP---AIVPSPSPSSP 278
Query: 315 PPLAQSPVRTP---------SPTRALPVKP---LKQPKPKARDP---NKREMNVEEKHKL 359
PP PV P + +PV+P + P+ + N R++ +EEK +L
Sbjct: 279 PPPPPPPVAAPVLENRTWEREESMTIPVEPEAVITAPEKAEEEEAPVNNRDLTLEEKRRL 338
Query: 360 GLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTNWKKMVS 419
LQ LP +K+E VVQII+K N L Q DEIELD++++D TLWEL R VT +K+ +S
Sbjct: 339 SEELQDLPYDKLETVVQIIKKSNPELSQKDDEIELDIDSLDINTLWELYRFVTGYKESLS 398
Query: 420 KIKRQALMDNNNVPSNKGNGELPDREKV-----DATPPSEGKKQKKIDTVDEDVDIGDDM 474
K K +A G G D E V + T G ++ + I
Sbjct: 399 K-KNEA----------HGFGSERDAESVHNSIQEPTTLVSGTTTSRV--TESGKAIRTSS 445
Query: 475 PANDFPPVEIEKDKDMGGTGGRASSSSSGSSSSGSGDSSSS 515
PA +++ G + +SSS SGS SS + SSS
Sbjct: 446 PAR-------QENNASGSSSSNSSSSDSGSCSSDTDSDSSS 479
>pir||H86312 F2H15.2 protein - Arabidopsis thaliana gi|9665057|gb|AAF97259.1|
Contains similarity to female sterile homeotic-related
protein Frg-1 from Mus musculus gb|AF045462 and contains
a bromodomain PF|00439. [Arabidopsis thaliana]
Length = 440
Score = 212 bits (540), Expect = 2e-53
Identities = 147/421 (34%), Positives = 210/421 (48%), Gaps = 48/421 (11%)
Query: 19 GGGAGFMGKVPYANPNPNPKFKRNQSPSDDASSINRRSNDVVTNHSQYVT-FNVSSYSKS 77
GGGA K +++ PK S + + + SN + ++ ++SS SK
Sbjct: 8 GGGASKTKKHKWSSSQNRPK-PMGVSRQERSVPLVSPSNSFASEDDHHMLKISLSSISKL 66
Query: 78 ELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNGG--GSAKKSANKKFSGNKRPFPAE 135
E+ L+ +EL+++R L R + S G G +KK G K A+
Sbjct: 67 EVRNLKRKLKSELDEVRSLIKRFDPEANPGGSMAKSGVVGRSKKVKTGNGGGKKSGHGAD 126
Query: 136 KELKRSKSEVGSAMKACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTV 195
K + K C +L KLMK K W+F+ PVD L LHDY +I+K PMDLGTV
Sbjct: 127 KGTVQ-------IFKNCNSLLTKLMKHKSAWVFNVPVDAKGLGLHDYHNIVKEPMDLGTV 179
Query: 196 KSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFDE 255
K+KL K+ Y +P +FA+DV+LTF NA+ YNP GHDV A LL FE+ + I+ ++D
Sbjct: 180 KTKLGKSLYKSPLDFAEDVRLTFNNAILYNPIGHDVYRFAELLLNMFEDKWVSIEMQYD- 238
Query: 256 KSFDDELQASSWNHVEPERERERVKKKDNPIPIP-PPVAKRQELLPEPASTSNQPSTSNP 314
R+ +D P P P +A E LP + PS S+P
Sbjct: 239 -----------------NLHRKFKPTRDIEFPAPAPSIAPIVEPLP---AIVPSPSPSSP 278
Query: 315 PPLAQSPVRTP---------SPTRALPVKP---LKQPKPKARDP---NKREMNVEEKHKL 359
PP PV P + +PV+P + P+ + N R++ +EEK +L
Sbjct: 279 PPPPPPPVAAPVLENRTWEREESMTIPVEPEAVITAPEKAEEEEAPVNNRDLTLEEKRRL 338
Query: 360 GLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTNWKKMVS 419
LQ LP +K+E VVQII+K N L Q DEIELD++++D TLWEL R VT +K+ +S
Sbjct: 339 SEELQDLPYDKLETVVQIIKKSNPELSQKDDEIELDIDSLDINTLWELYRFVTGYKESLS 398
Query: 420 K 420
K
Sbjct: 399 K 399
>ref|XP_473936.1| OSJNBb0085C12.13 [Oryza sativa (japonica cultivar-group)]
gi|38345711|emb|CAD41833.2| OSJNBb0085C12.13 [Oryza
sativa (japonica cultivar-group)]
gi|38344163|emb|CAE03494.2| OSJNBa0053K19.2 [Oryza
sativa (japonica cultivar-group)]
Length = 299
Score = 197 bits (501), Expect = 7e-49
Identities = 127/331 (38%), Positives = 172/331 (51%), Gaps = 60/331 (18%)
Query: 150 KACGQILQKLMKTKIGWIFSSPVDPVALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAE 209
K C QIL KL K K F++PV+ L L DY +IK PMDLGTV++ LA Y + +
Sbjct: 3 KRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDD 62
Query: 210 FADDVKLTFKNALTYNPKGHDVNTAAMQLLEKFEELYRPIQEKFDEKSFDDELQASSWNH 269
FA D++LTF NAL YNP GH+V+T A LL FE++Y+ F+++
Sbjct: 63 FAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQE------------- 109
Query: 270 VEPERERERVKKKDNPIPIPPPVAKRQELLPEPASTSNQPSTSNPPPLAQSPVRTPSPTR 329
+K + P+P+PPP EL P A +P N
Sbjct: 110 ---------LKILEPPMPVPPP-----ELPPAKAPAQVKPRAGN---------------- 139
Query: 330 ALPVKPLKQPKPKARDPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDG 389
+K K KAR+PNKREM +EEK+ L +GL+ LP EKM V+QI+RKRNG+ E G
Sbjct: 140 ------VKMRKTKAREPNKREMTLEEKNLLRVGLESLPEEKMHNVLQIVRKRNGNPELVG 193
Query: 390 DEIELDMEAVDTETLWELDRLVTNWKKMVSKIKRQALMDNNNVP------SNKG----NG 439
EIELD++ +D ET WELDR V +KK ++K +R A+++ N +N NG
Sbjct: 194 GEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNGENADVIDASVANDSDMLVNG 253
Query: 440 ELPDR-EKVDATPPSEGKKQKKIDTVDEDVD 469
+ D T E K KI T E +D
Sbjct: 254 STATMVDNGDVTMAIESKDPDKITTQAEQLD 284
>ref|XP_479904.1| putative bromodomain-containing protein [Oryza sativa (japonica
cultivar-group)] gi|42407711|dbj|BAD08859.1| putative
bromodomain-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 791
Score = 170 bits (430), Expect = 1e-40
Identities = 158/497 (31%), Positives = 221/497 (43%), Gaps = 72/497 (14%)
Query: 69 FNVSSYSKSELNELRNCFVTELEQIRQLQTRIESGELKSRSSHNGGGSAK---------- 118
F + S S+ +L ELEQ++ LQ+R+ L+ + GG+A
Sbjct: 73 FMLPRMSPSDKKDLEMRLRKELEQVKALQSRLF---LRPAAVSMNGGAASASGDVVAKRN 129
Query: 119 ----KSANKKFSGNKRPFPAEKELKRSKSEVGSAMKACGQILQKLMKTKIGWIFSSPVDP 174
K +N SG P A + RS + A K CG +L+ L K + F +PVD
Sbjct: 130 DAKLKRSNSVQSGRGVPPSAATPVVRS-ANYAEAFKQCGNLLKNLFKHQWAGPFLAPVDV 188
Query: 175 VALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPAEFADDVKLTFKNALTYNPKGHDVNTA 234
V LN+ DYFDIIK PMDLGT++ KL YSTP +FA DV+LTF NA+TYNP G+DVN
Sbjct: 189 VQLNIPDYFDIIKKPMDLGTIEKKLNAGMYSTPWDFAADVRLTFDNAVTYNPVGNDVNLM 248
Query: 235 AMQLLEKFEELYRPIQEKFDEKSFDDELQASSWNHVEPERERERVKK----KDNPIP--- 287
L FE ++ I++K S DD+ EP ++ VKK KD P
Sbjct: 249 GKTLKCIFETRWKFIEKKL--PSLDDKFSVRR----EPS-QKGAVKKDTIEKDYPSEKKH 301
Query: 288 IPPPVAKRQELLPEPAST--SNQPSTSNPPPLAQSPVRTP--SPTRALPVKPLKQPKPKA 343
V K+ E AST + QP PL Q + P + + + QP
Sbjct: 302 STKGVHKKDMFKKEDASTKPALQPKKRKASPLVQGSLEIPVVEADKVIDDAQVVQPSKVI 361
Query: 344 RD-----------------PNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHL- 385
D +K M +K++L + LQ VV IR HL
Sbjct: 362 DDAQVVQAFKVIDDAQVVQASKEIMTDRQKYELSVRLQSYGGLIPNHVVDFIR---SHLP 418
Query: 386 ---EQDGDEIELDMEAVDTETLWELDRLVTNWKKMVSKIKRQALMDNNNVPSNKGNGELP 442
E D DE+ELDM + TL+EL +L+ ++ ++ N + K
Sbjct: 419 DDNEGDEDELELDMNVLSDSTLFELQKLLDDYDRV-----------NQSGNPTKDEHREV 467
Query: 443 DREKVDATPPSEGKKQKKIDTVDEDVDI-GDDMPANDFPPVEIEKDKDMGGTGGRASSSS 501
+ E S ++ + V+EDVDI G+D+P +PP E + + SSSS
Sbjct: 468 EFESEYGLSNSSMHHEEGNELVEEDVDIGGNDLPPLTYPPAVFESETAERSSKHSTSSSS 527
Query: 502 SGSSSSGSGDSSSSETS 518
S S S S DS SS +S
Sbjct: 528 SSDSESSSSDSDSSSSS 544
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.310 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,027,068,181
Number of Sequences: 2540612
Number of extensions: 49717257
Number of successful extensions: 379954
Number of sequences better than 10.0: 3372
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 2294
Number of HSP's that attempted gapping in prelim test: 345687
Number of HSP's gapped (non-prelim): 20948
length of query: 559
length of database: 863,360,394
effective HSP length: 133
effective length of query: 426
effective length of database: 525,458,998
effective search space: 223845533148
effective search space used: 223845533148
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 78 (34.7 bits)
Medicago: description of AC144564.17