BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144541.11 - phase: 0
(322 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM97107.1| ATP-dependent Clp protease proteolytic subunit (C... 409 e-113
dbj|BAD43698.1| ClpP protease complex subunit ClpR3 [Arabidopsis... 408 e-112
dbj|BAD44446.1| ClpP protease complex subunit ClpR3 [Arabidopsis... 408 e-112
pir||D86223 hypothetical protein [imported] - Arabidopsis thalia... 279 7e-74
ref|NP_682549.1| ATP-dependent Clp protease proteolytic subunit ... 195 1e-48
ref|ZP_00158493.2| COG0740: Protease subunit of ATP-dependent Cl... 185 1e-45
dbj|BAB76057.1| ATP-dependent Clp protease proteolytic subunit [... 183 7e-45
gb|AAK39833.1| ATP-dependent Clp protease proteolytic subunit [G... 172 9e-42
ref|ZP_00324252.1| COG0740: Protease subunit of ATP-dependent Cl... 172 2e-41
ref|NP_441889.1| ATP-dependent Clp protease proteolytic subunit ... 168 2e-40
emb|CAE20490.1| Clp protease proteolytic subunit [Prochlorococcu... 167 3e-40
ref|ZP_00514879.1| Peptidase S14, ClpP [Crocosphaera watsonii WH... 167 3e-40
ref|YP_172282.1| ATP-dependent Clp protease proteolytic subunit ... 167 5e-40
gb|AAN18141.1| At1g49970/F2J10_5 [Arabidopsis thaliana] gi|53605... 166 7e-40
emb|CAE08163.1| ATP-dependent Clp protease proteolytic subunit 4... 165 1e-39
gb|AAN15369.1| unknown protein [Arabidopsis thaliana] gi|1969885... 165 2e-39
gb|AAQ00431.1| Protease subunit of ATP-dependent Clp protease [P... 164 4e-39
gb|AAM65035.1| ATP-dependent Clp protease proteolytic subunit Cl... 163 6e-39
gb|AAL23932.1| hypothetical protein [Cyanothece sp. PCC 8801] 163 6e-39
ref|NP_893430.1| Clp protease proteolytic subunit [Prochlorococc... 160 4e-38
>gb|AAM97107.1| ATP-dependent Clp protease proteolytic subunit (ClpR3), putative
[Arabidopsis thaliana] gi|18390982|ref|NP_563836.1|
ATP-dependent Clp protease proteolytic subunit, putative
[Arabidopsis thaliana] gi|25083963|gb|AAN72143.1|
ATP-dependent Clp protease proteolytic subunit (ClpR3),
putative [Arabidopsis thaliana]
gi|51971739|dbj|BAD44534.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51971625|dbj|BAD44477.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51971381|dbj|BAD44355.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51971379|dbj|BAD44354.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51971032|dbj|BAD44208.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51969858|dbj|BAD43621.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51969856|dbj|BAD43620.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51969676|dbj|BAD43530.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51968816|dbj|BAD43100.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51968776|dbj|BAD43080.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
gi|51968388|dbj|BAD42886.1| ClpP protease complex
subunit ClpR3 [Arabidopsis thaliana]
Length = 330
Score = 409 bits (1052), Expect = e-113
Identities = 221/333 (66%), Positives = 264/333 (78%), Gaps = 22/333 (6%)
Query: 1 MATCFRVPISMPTSMPASSTRFTP-----------TRLRTLR-TVNAISKSKIPF---NP 45
MA+C + SM + +P SS+ F+P L+T R A + +KIP NP
Sbjct: 1 MASCLQA--SMNSLLPRSSS-FSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINP 57
Query: 46 NDPFLSKLASVAESSPETLFNPSSSPDNLPFLDIFDSPQLMATPAQLERSASYSQQRRPK 105
DPFLS LAS+A +SPE L N + D P+LDIFDSPQLM++PAQ+ERS +Y++ R P+
Sbjct: 58 KDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHR-PR 116
Query: 106 RPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADG 165
PPPDLPS+LL+GRIVYIGMPLVPAVTELV+AELM+LQW+ PKEPIYIYINSTGTTR DG
Sbjct: 117 TPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDG 176
Query: 166 ETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQP 225
ETV MESEGFAIYD++MQ+K E++TV +GAA+GQACLLLSAGTKG+R+M PHAKAMIQQP
Sbjct: 177 ETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQP 236
Query: 226 RVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSYYMDALLAKEF 285
RVPSSGL PASDVLI AKEV+ NRD LV+LL+KHT NS ETV+NVM+R YYMDA AKEF
Sbjct: 237 RVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEF 296
Query: 286 GVIDKILWRGQEKIMAD-VPSRDDRENGTAGAK 317
GVID+ILWRGQEKI+AD VPS + +N AG K
Sbjct: 297 GVIDRILWRGQEKIIADVVPSEEFDKN--AGIK 327
>dbj|BAD43698.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
Length = 315
Score = 408 bits (1049), Expect = e-112
Identities = 214/307 (69%), Positives = 251/307 (81%), Gaps = 8/307 (2%)
Query: 16 PASSTRFTPTRLRTLR-TVNAISKSKIPF---NPNDPFLSKLASVAESSPETLFNPSSSP 71
P SS L+T R A + +KIP NP DPFLS LAS+A +SPE L N +
Sbjct: 9 PLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDPFLSTLASIAANSPEKLLNRPVNA 68
Query: 72 DNLPFLDIFDSPQLMATPAQLERSASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPAV 131
D P+LDIFDSPQLM++PAQ+ERS +Y++ R P+ PPPDLPS+LL+GRIVYIGMPLVPAV
Sbjct: 69 DVPPYLDIFDSPQLMSSPAQVERSVAYNEHR-PRTPPPDLPSMLLDGRIVYIGMPLVPAV 127
Query: 132 TELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTV 191
TELV+AELM+LQW+ PKEPIYIYINSTGTTR DGETV MESEGFAIYD++MQ+K E++TV
Sbjct: 128 TELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTV 187
Query: 192 ALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDT 251
+GAA+GQACLLLSAGTKG+R+M PHAKAMIQQPRVPSSGL PASDVLI AKEV+ NRD
Sbjct: 188 CVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRDI 247
Query: 252 LVKLLAKHTENSEETVSNVMKRSYYMDALLAKEFGVIDKILWRGQEKIMAD-VPSRDDRE 310
LV+LL+KHT NS ETV+NVM+R YYMDA AKEFGVID+ILWRGQEKI+AD VPS + +
Sbjct: 248 LVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRILWRGQEKIIADVVPSEEFDK 307
Query: 311 NGTAGAK 317
N AG K
Sbjct: 308 N--AGIK 312
>dbj|BAD44446.1| ClpP protease complex subunit ClpR3 [Arabidopsis thaliana]
Length = 330
Score = 408 bits (1048), Expect = e-112
Identities = 220/333 (66%), Positives = 264/333 (79%), Gaps = 22/333 (6%)
Query: 1 MATCFRVPISMPTSMPASSTRFTP-----------TRLRTLR-TVNAISKSKIPF---NP 45
MA+C + SM + +P SS+ F+P L+T R A + +KIP NP
Sbjct: 1 MASCLQA--SMNSLLPRSSS-FSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINP 57
Query: 46 NDPFLSKLASVAESSPETLFNPSSSPDNLPFLDIFDSPQLMATPAQLERSASYSQQRRPK 105
DPFLS LAS+A +SPE L N + D P+LDIFDSPQLM++PAQ+ERS +Y++ R P+
Sbjct: 58 KDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHR-PR 116
Query: 106 RPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADG 165
PPPDLPS+LL+GRIVYIGMPLVPAVTELV+AELM+LQW+ PKEPIYIYINSTGTTR DG
Sbjct: 117 TPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDG 176
Query: 166 ETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQP 225
ETV MESEGFAIYD++MQ+K E++TV +GAA+GQACLLLSAGTKG+R+M PHAKAMIQ+P
Sbjct: 177 ETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQRP 236
Query: 226 RVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSYYMDALLAKEF 285
RVPSSGL PASDVLI AKEV+ NRD LV+LL+KHT NS ETV+NVM+R YYMDA AKEF
Sbjct: 237 RVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEF 296
Query: 286 GVIDKILWRGQEKIMAD-VPSRDDRENGTAGAK 317
GVID+ILWRGQEKI+AD VPS + +N AG K
Sbjct: 297 GVIDRILWRGQEKIIADVVPSEEFDKN--AGIK 327
>pir||D86223 hypothetical protein [imported] - Arabidopsis thaliana
gi|2342674|gb|AAB70396.1| Similar to ATP-dependent Clp
protease (gb|D90915). EST gb|N65461 comes from this
gene. [Arabidopsis thaliana]
Length = 292
Score = 279 bits (714), Expect = 7e-74
Identities = 169/320 (52%), Positives = 207/320 (63%), Gaps = 64/320 (20%)
Query: 1 MATCFRVPISMPTSMPASSTRFTP-----------TRLRTLR-TVNAISKSKIPF---NP 45
MA+C + SM + +P SS+ F+P L+T R A + +KIP NP
Sbjct: 1 MASCLQA--SMNSLLPRSSS-FSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINP 57
Query: 46 NDPFLSKLASVAESSPETLFNPSSSPDNLPFLDIFDSPQLMATPAQLERSASYSQQRRPK 105
DPFLS LAS+A +SPE L N + D P+LDIFDSPQLM++PAQ+ERS +Y+ + RP+
Sbjct: 58 KDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYN-EHRPR 116
Query: 106 RPPPDLPSLLLNGRIVYIGMP---------LVPAVTELVIAELMFLQWMAPKEPIYIYIN 156
PPPDLPS+LL+GRIVYIGMP LVPAVTELV+AELM+LQW+ PKEPIYIYIN
Sbjct: 117 TPPPDLPSMLLDGRIVYIGMPTDDDIFCFQLVPAVTELVVAELMYLQWLDPKEPIYIYIN 176
Query: 157 STGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTP 216
STGTTR DGETV +TV +GAA+GQACLLLSAGTKG+R+M P
Sbjct: 177 STGTTRDDGETV--------------------HTVCVGAAIGQACLLLSAGTKGKRFMMP 216
Query: 217 HAKAMIQQPRVPSSGLRPASDVLIH-----AKEVMVNRDTLVKLLAKHTENSEETVSNVM 271
HAK G D I +V+ NRD LV+LL+KHT NS ETV+NVM
Sbjct: 217 HAK-----------GEESEFDYFIFLIPVMQLQVITNRDILVELLSKHTGNSVETVANVM 265
Query: 272 KRSYYMDALLAKEFGVIDKI 291
+R YYMDA AKEFGVID++
Sbjct: 266 RRPYYMDAPKAKEFGVIDRV 285
>ref|NP_682549.1| ATP-dependent Clp protease proteolytic subunit 3
[Thermosynechococcus elongatus BP-1]
gi|22295485|dbj|BAC09311.1| ATP-dependent Clp protease
proteolytic subunit 3 [Thermosynechococcus elongatus
BP-1]
Length = 218
Score = 195 bits (496), Expect = 1e-48
Identities = 101/197 (51%), Positives = 138/197 (69%), Gaps = 2/197 (1%)
Query: 96 ASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYI 155
A+Y + PPPDLPSLLL RIVY+GMPLVPAVTEL+IAEL++LQ+ P++PI IYI
Sbjct: 10 AAYYGDAYYRTPPPDLPSLLLKERIVYLGMPLVPAVTELIIAELLYLQYDDPEKPIRIYI 69
Query: 156 NSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMT 215
NSTGT+R DGE V E+E FAI D M +K ++T+ +G A+G A +LLSAGTKG R
Sbjct: 70 NSTGTSRYDGEPVGFETEAFAICDTMRYIKPPVHTICIGQAMGMAAMLLSAGTKGCRASL 129
Query: 216 PHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSY 275
PHA ++ Q + + G A+D+ I AKEV+ N+ +V++LA++T E ++ M R
Sbjct: 130 PHATIVLHQTKSYAQG--QATDIQIRAKEVLANKAMMVEILAQNTGQPPERITRDMDRLL 187
Query: 276 YMDALLAKEFGVIDKIL 292
YM +AKE+G+ID+IL
Sbjct: 188 YMTPQMAKEYGIIDRIL 204
>ref|ZP_00158493.2| COG0740: Protease subunit of ATP-dependent Clp proteases [Anabaena
variabilis ATCC 29413]
Length = 220
Score = 185 bits (470), Expect = 1e-45
Identities = 94/196 (47%), Positives = 134/196 (67%), Gaps = 2/196 (1%)
Query: 96 ASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYI 155
A Y + PPPDLPSLLL RIVY+GMPLVPAVTEL++A+L++LQ P +PI IYI
Sbjct: 11 APYYGDNSYRTPPPDLPSLLLKERIVYLGMPLVPAVTELIVAQLLYLQSDDPDKPIKIYI 70
Query: 156 NSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMT 215
NSTGT+ GE + E+E FAIYD M +K I+T+ +G+A+G A +LLSAGTKG R
Sbjct: 71 NSTGTSGYSGEPIGFETEAFAIYDTMKYIKPPIHTICIGSAMGMAAMLLSAGTKGCRASL 130
Query: 216 PHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSY 275
P+A ++ QP+ + G A+D+ I A+EV+VN+ ++V + A+ T + E ++ M R
Sbjct: 131 PNASIILHQPKSYAQG--QATDIQIRAREVLVNKGSMVDIFARTTGQAPEKITKDMDRLL 188
Query: 276 YMDALLAKEFGVIDKI 291
YM AK++G+ID++
Sbjct: 189 YMTPYQAKDYGLIDRV 204
>dbj|BAB76057.1| ATP-dependent Clp protease proteolytic subunit [Nostoc sp. PCC
7120] gi|17231850|ref|NP_488398.1| ATP-dependent Clp
protease proteolytic subunit [Nostoc sp. PCC 7120]
Length = 220
Score = 183 bits (464), Expect = 7e-45
Identities = 93/196 (47%), Positives = 133/196 (67%), Gaps = 2/196 (1%)
Query: 96 ASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYI 155
A Y + PPPDLPSLLL RIVY+GMPLVPAVTEL++A+L++LQ P +PI IYI
Sbjct: 11 APYYGDSSYRTPPPDLPSLLLKERIVYLGMPLVPAVTELIVAQLLYLQSDDPDKPIKIYI 70
Query: 156 NSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMT 215
NSTGT+ GE + E+E FAIYD M +K I+T+ +G+A+G A +LLSAGTKG R
Sbjct: 71 NSTGTSGYSGEPIGFETEAFAIYDTMKYIKPPIHTICIGSAMGMAAMLLSAGTKGCRASL 130
Query: 216 PHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSY 275
P + ++ QP+ + G A+D+ I A+EV+VN+ ++V + A+ T + E ++ M R
Sbjct: 131 PSSSIILHQPKSYAQG--QATDIQIRAREVLVNKGSMVDIFARTTGQAPEKITKDMDRLL 188
Query: 276 YMDALLAKEFGVIDKI 291
YM AK++G+ID++
Sbjct: 189 YMTPYQAKDYGLIDRV 204
>gb|AAK39833.1| ATP-dependent Clp protease proteolytic subunit [Guillardia theta]
gi|25289870|pir||F90087 ATP-dependent Clp protease
proteolytic subunit [imported] - Guillardia theta
nucleomorph gi|13812146|ref|NP_113273.1| ATP-dependent
Clp protease proteolytic subunit [Guillardia theta]
Length = 254
Score = 172 bits (437), Expect = 9e-42
Identities = 87/186 (46%), Positives = 125/186 (66%), Gaps = 2/186 (1%)
Query: 107 PPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADGE 166
PPPDLPSLLL+ RIVY+GMPLVPAVTEL++AE ++LQ+ ++P+Y+Y+NSTGT+ DG
Sbjct: 56 PPPDLPSLLLHNRIVYLGMPLVPAVTELIVAEFLYLQYENSEKPVYMYLNSTGTSNPDGS 115
Query: 167 TVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPR 226
+ E+E FAI D M +K ++T+ +G A G +LLS+G G+R P+A MI QP
Sbjct: 116 SAGFETEAFAIADTMNYIKPPVHTICVGQAFGTCAMLLSSGEPGQRAALPNATIMIHQPT 175
Query: 227 VPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSYYMDALLAKEFG 286
+ G ASD+ I A+EV+ NR ++LA+ + S E V R+ Y+ + A E+G
Sbjct: 176 SRARG--QASDIAIKAREVLYNRKQCFEILAETSGQSLEKVMKDASRTKYLSPMEAVEYG 233
Query: 287 VIDKIL 292
+ID+IL
Sbjct: 234 IIDRIL 239
>ref|ZP_00324252.1| COG0740: Protease subunit of ATP-dependent Clp proteases
[Trichodesmium erythraeum IMS101]
Length = 229
Score = 172 bits (435), Expect = 2e-41
Identities = 91/217 (41%), Positives = 139/217 (63%), Gaps = 12/217 (5%)
Query: 86 MATPAQLERSASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELV 135
M +P + +++SY + PPPDL SL+L RIVY+G+PL + VT+L+
Sbjct: 1 MKSPIKAVQTSSYYGDVSFRTPPPDLESLMLKERIVYLGLPLFSSDEVKRNVGIDVTQLI 60
Query: 136 IAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGA 195
IA+L++LQ+ P++PIY YINSTGT+ G+ + E+E FAI D M +K I+T+ +G
Sbjct: 61 IAQLLYLQFDNPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMSYVKPPIHTICIGQ 120
Query: 196 AVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKL 255
A+G A ++LSAGTKG R PHA ++ Q + + G A+D+ I AKEV+VN+ T + +
Sbjct: 121 AMGTAAMILSAGTKGYRASLPHATIVLNQAKTGARG--QATDISIRAKEVLVNKTTFLDI 178
Query: 256 LAKHTENSEETVSNVMKRSYYMDALLAKEFGVIDKIL 292
L+K+T S E ++ R YM +AKE+G+ID++L
Sbjct: 179 LSKNTGQSVEKIAKDTDRMLYMTPEIAKEYGLIDQVL 215
>ref|NP_441889.1| ATP-dependent Clp protease proteolytic subunit [Synechocystis sp.
PCC 6803] gi|1653655|dbj|BAA18567.1| ATP-dependent Clp
protease proteolytic subunit [Synechocystis sp. PCC
6803] gi|18202351|sp|P74466|CLPR_SYNY3 Putative
ATP-dependent Clp protease proteolytic subunit-like
(Endopeptidase Clp-like)
Length = 225
Score = 168 bits (426), Expect = 2e-40
Identities = 88/207 (42%), Positives = 135/207 (64%), Gaps = 12/207 (5%)
Query: 96 ASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELVIAELMFLQWM 145
+SY K PPPDL SLLL RIVY+GMPL + VT+L+IA+L++LQ+
Sbjct: 8 SSYYGDMAFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFD 67
Query: 146 APKEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLS 205
P +PIY YINSTGT+ G+ V E+E FAI D + +K ++T+ +G A+G A ++LS
Sbjct: 68 DPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILS 127
Query: 206 AGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEE 265
+GTKG R PHA ++ Q R + G A+D+ I AKEV+ N+ T++++L+ +T ++E
Sbjct: 128 SGTKGYRASLPHATIVLNQNRTGAQG--QATDIQIRAKEVISNKQTMLEILSLNTGQTQE 185
Query: 266 TVSNVMKRSYYMDALLAKEFGVIDKIL 292
++ M R++Y+ AKE+G+ID++L
Sbjct: 186 KLAKDMDRTFYLTPAQAKEYGLIDRVL 212
>emb|CAE20490.1| Clp protease proteolytic subunit [Prochlorococcus marinus str. MIT
9313] gi|33862588|ref|NP_894148.1| Clp protease
proteolytic subunit [Prochlorococcus marinus str. MIT
9313]
Length = 223
Score = 167 bits (424), Expect = 3e-40
Identities = 90/205 (43%), Positives = 130/205 (62%), Gaps = 12/205 (5%)
Query: 98 YSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELVIAELMFLQWMAP 147
Y + + PPPDLPSLLL RIVY+G+PL VTEL+IA+L++L++ P
Sbjct: 8 YGESTVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDNP 67
Query: 148 KEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAG 207
++PIY YINSTGT+ G+ V E+E FAI D + +K ++T+ +G A+G A ++LSAG
Sbjct: 68 EKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAG 127
Query: 208 TKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETV 267
TKG R PHA ++ QPR + G A+D+ I AKEV+ N+ ++K+LA +T S E +
Sbjct: 128 TKGHRAALPHASIVLHQPRSGAQG--QATDIQIRAKEVLHNKQAMLKILASNTGRSIEQL 185
Query: 268 SNVMKRSYYMDALLAKEFGVIDKIL 292
S R Y+ A E+G+ID+IL
Sbjct: 186 SKDSDRMSYLTPGDAVEYGIIDRIL 210
>ref|ZP_00514879.1| Peptidase S14, ClpP [Crocosphaera watsonii WH 8501]
gi|67856473|gb|EAM51714.1| Peptidase S14, ClpP
[Crocosphaera watsonii WH 8501]
Length = 226
Score = 167 bits (424), Expect = 3e-40
Identities = 87/207 (42%), Positives = 134/207 (64%), Gaps = 12/207 (5%)
Query: 96 ASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELVIAELMFLQWM 145
A Y + PPPDL SLLL RI+Y+G+PL + VT+L+IA+L++LQ+
Sbjct: 8 AGYYGDTNFRTPPPDLESLLLKERIIYLGLPLFSSDEIKQQVGIDVTQLIIAQLLYLQFD 67
Query: 146 APKEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLS 205
P++PIY YINSTGT+ G+ + E+E FAI D M +K I+T+ +G A+G A ++LS
Sbjct: 68 NPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMNYIKPPIHTICIGQAMGTAAMILS 127
Query: 206 AGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEE 265
AGTKG R PHA ++ Q R + G A+D+ I AKEV+ N+ T++ +LA++T + E
Sbjct: 128 AGTKGCRASLPHATIVLNQNRSGAQG--QATDIQIRAKEVLQNKQTMLTILAENTGQTAE 185
Query: 266 TVSNVMKRSYYMDALLAKEFGVIDKIL 292
++ + R++Y+ AKE+G+ID++L
Sbjct: 186 KIAKDIDRTFYLTPAKAKEYGLIDRVL 212
>ref|YP_172282.1| ATP-dependent Clp protease proteolytic subunit [Synechococcus
elongatus PCC 6301] gi|7264063|emb|CAB81780.1|
ATP-dependent Clp protease proteolytic subunit
[Synechococcus elongatus PCC 7942]
gi|56686540|dbj|BAD79762.1| ATP-dependent Clp protease
proteolytic subunit [Synechococcus elongatus PCC 6301]
gi|46130571|ref|ZP_00165498.2| COG0740: Protease subunit
of ATP-dependent Clp proteases [Synechococcus elongatus
PCC 7942] gi|18203214|sp|Q9L4P4|CLPR_SYNP7 Putative
ATP-dependent Clp protease proteolytic subunit-like
(Endopeptidase Clp-like)
Length = 228
Score = 167 bits (422), Expect = 5e-40
Identities = 87/211 (41%), Positives = 134/211 (63%), Gaps = 13/211 (6%)
Query: 105 KRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELVIAELMFLQWMAPKEPIYIY 154
+ PPPDLPSLLL RI+Y+GMPL + VTEL+IA+L++L++ P++PIY Y
Sbjct: 19 RTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFY 78
Query: 155 INSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYM 214
INSTGT+ G+ + E+E FAI D M +K ++T+ +G A+G A ++LS GT G R
Sbjct: 79 INSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRAS 138
Query: 215 TPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRS 274
PHA ++ QPR + G ASD+ I AKEV+ N+ T++++ A++T + ++ R
Sbjct: 139 LPHATIVLNQPRTGAQG--QASDIQIRAKEVLANKRTMLEIFARNTGQDPDRLARDTDRM 196
Query: 275 YYMDALLAKEFGVIDKILWRGQEKIMADVPS 305
YM A E+G+ID++L ++ + A +PS
Sbjct: 197 LYMTPAQAVEYGLIDRVL-DSRKDLPAPLPS 226
>gb|AAN18141.1| At1g49970/F2J10_5 [Arabidopsis thaliana] gi|5360595|dbj|BAA82069.1|
nClpP5 [Arabidopsis thaliana] gi|8569101|gb|AAF76446.1|
Identical to nClpP5 from Arabidopsis thaliana
gb|AB022330 and contains prenyltransferase PF|00432 and
CLP protease PF|00574 domains. ESTs gb|H76908,
gb|AA605567, gb|T21932, gb|T22976 come from this gene
gi|18402863|ref|NP_564560.1| ATP-dependent Clp protease
proteolytic subunit (ClpR1) (nClpP5) [Arabidopsis
thaliana] gi|15010752|gb|AAK74035.1| At1g49970/F2J10_5
[Arabidopsis thaliana] gi|25453549|pir||T52451
endopeptidase Clp chain P extended inactive homolog
clpP5 [similarity] - Arabidopsis thaliana
Length = 387
Score = 166 bits (421), Expect = 7e-40
Identities = 87/189 (46%), Positives = 123/189 (65%), Gaps = 1/189 (0%)
Query: 103 RPKRPPPDLPSLLLNGRIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTR 162
RP+ PPDLPSLLL+ RI Y+GMP+VPAVTEL++A+ M+L + P +PIY+YINS GT
Sbjct: 164 RPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQN 223
Query: 163 ADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMI 222
ETV E+E +AI D + K+++ T+ G A GQA +LLS G KG R + PH+ +
Sbjct: 224 EKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKL 283
Query: 223 QQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRSYYMDALLA 282
P+V S A D+ I AKE+ N + ++LLAK T S+E ++ +KR Y+ A A
Sbjct: 284 YLPKVNRSS-GAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQAA 342
Query: 283 KEFGVIDKI 291
++G+ DKI
Sbjct: 343 IDYGIADKI 351
>emb|CAE08163.1| ATP-dependent Clp protease proteolytic subunit 4 [Synechococcus sp.
WH 8102] gi|33866182|ref|NP_897741.1| ATP-dependent Clp
protease proteolytic subunit 4 [Synechococcus sp. WH
8102]
Length = 222
Score = 165 bits (418), Expect = 1e-39
Identities = 86/205 (41%), Positives = 130/205 (62%), Gaps = 12/205 (5%)
Query: 98 YSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELVIAELMFLQWMAP 147
Y + PPPDLPSLLL RIVY+G+PL VTEL+IA+L+FL++ P
Sbjct: 8 YGDSAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQMGIDVTELIIAQLLFLEFDNP 67
Query: 148 KEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAG 207
++PIY YINSTGT+ G+ + E+E FAI D + +K ++T+ +G A+G A ++LSAG
Sbjct: 68 EKPIYFYINSTGTSWYSGDAIGFETEAFAICDTLRYVKPPVHTICIGQAMGTAAVILSAG 127
Query: 208 TKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETV 267
TKG+R PH+ ++ QPR + G A+D+ I AKEV+ N+ ++++L+ +T S E +
Sbjct: 128 TKGQRAALPHSSIVLHQPRSGAQG--QATDIQIRAKEVLHNKQAMLEILSTNTGRSVEEL 185
Query: 268 SNVMKRSYYMDALLAKEFGVIDKIL 292
S R Y+ A E+G+ID++L
Sbjct: 186 SKDSDRMSYLTPAQAVEYGLIDRVL 210
>gb|AAN15369.1| unknown protein [Arabidopsis thaliana] gi|19698857|gb|AAL91164.1|
unknown protein [Arabidopsis thaliana]
Length = 305
Score = 165 bits (417), Expect = 2e-39
Identities = 107/282 (37%), Positives = 158/282 (55%), Gaps = 9/282 (3%)
Query: 13 TSMPASSTRFTPTRLRTLRTVNAISKSK-IPFNPNDPFLSKLASVAESSPETLFNPSSSP 71
T++ A ++ P+ R LR+ S S + + ++ FLS + SS L
Sbjct: 12 TTLRARTSAIIPSSTRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSD--LCGAKLRA 69
Query: 72 DNLPFLDIFDSPQLMATPAQLERSASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPAV 131
++L L+ S + +S+ ++PPPDL S L RIVY+GM LVP+V
Sbjct: 70 ESLNPLNFSSSKPKRGVVTMV---IPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSV 126
Query: 132 TELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTV 191
TEL++AE ++LQ+ K+PIY+YINSTGTT+ +GE + ++E FAIYD M +K I T+
Sbjct: 127 TELILAEFLYLQYEDEKKPIYLYINSTGTTK-NGEKLGYDTEAFAIYDVMGYVKPPIFTL 185
Query: 192 ALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDT 251
+G A G+A LLL+AG KG R P + MI+QP G A+DV I KE+ +
Sbjct: 186 CVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQG--QATDVEIARKEIKHIKTE 243
Query: 252 LVKLLAKHTENSEETVSNVMKRSYYMDALLAKEFGVIDKILW 293
+VKL +KH S E + MKR Y A E+G+IDK+++
Sbjct: 244 MVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVY 285
>gb|AAQ00431.1| Protease subunit of ATP-dependent Clp protease [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33240836|ref|NP_875778.1| Protease subunit of
ATP-dependent Clp protease [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 221
Score = 164 bits (414), Expect = 4e-39
Identities = 87/205 (42%), Positives = 130/205 (62%), Gaps = 12/205 (5%)
Query: 98 YSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELVIAELMFLQWMAP 147
Y + PPPDLPSLLL RIVY+G+PL VTEL+IA+L+FL++ P
Sbjct: 8 YGDSAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLFLEFDNP 67
Query: 148 KEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAG 207
++PIY YINSTGT+ G+ + E+E FAI D + +K I+T+ +G A+G A ++LS G
Sbjct: 68 EKPIYFYINSTGTSWHTGDAIGFETEAFAICDTISYIKPPIHTICIGQAMGTAAVILSGG 127
Query: 208 TKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETV 267
+KG R PHA ++ QPR +SG A+D+ I AKEV+ N+ ++++L+K+T S +
Sbjct: 128 SKGHRAALPHASIVLHQPRSGASG--QATDIQIRAKEVIHNKQAMLEILSKNTGKSVSQL 185
Query: 268 SNVMKRSYYMDALLAKEFGVIDKIL 292
S R Y++ A E+G+ID++L
Sbjct: 186 SKDSDRMSYLNPHEAVEYGLIDRVL 210
>gb|AAM65035.1| ATP-dependent Clp protease proteolytic subunit ClpR4, putative
[Arabidopsis thaliana] gi|26450085|dbj|BAC42162.1|
putative ClpP protease complex subunit ClpR4
[Arabidopsis thaliana] gi|18414804|ref|NP_567521.1|
ATP-dependent Clp protease proteolytic subunit, putative
[Arabidopsis thaliana]
Length = 305
Score = 163 bits (413), Expect = 6e-39
Identities = 106/282 (37%), Positives = 158/282 (55%), Gaps = 9/282 (3%)
Query: 13 TSMPASSTRFTPTRLRTLRTVNAISKSK-IPFNPNDPFLSKLASVAESSPETLFNPSSSP 71
T++ A ++ P+ R LR+ S S + + ++ FLS + SS L
Sbjct: 12 TTLRARTSAIIPSSTRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSD--LCGAKLRA 69
Query: 72 DNLPFLDIFDSPQLMATPAQLERSASYSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPAV 131
++L L+ S + +S+ ++PPPDL S L RIVY+GM LVP+V
Sbjct: 70 ESLNPLNFSSSKPKRGVVTMV---IPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSV 126
Query: 132 TELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTV 191
TEL++AE ++LQ+ ++PIY+YINSTGTT+ +GE + ++E FAIYD M +K I T+
Sbjct: 127 TELILAEFLYLQYEDEEKPIYLYINSTGTTK-NGEKLGYDTEAFAIYDVMGYVKPPIFTL 185
Query: 192 ALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDT 251
+G A G+A LLL+AG KG R P + MI+QP G A+DV I KE+ +
Sbjct: 186 CVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQG--QATDVEIARKEIKHIKTE 243
Query: 252 LVKLLAKHTENSEETVSNVMKRSYYMDALLAKEFGVIDKILW 293
+VKL +KH S E + MKR Y A E+G+IDK+++
Sbjct: 244 MVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVY 285
>gb|AAL23932.1| hypothetical protein [Cyanothece sp. PCC 8801]
Length = 226
Score = 163 bits (413), Expect = 6e-39
Identities = 84/198 (42%), Positives = 129/198 (64%), Gaps = 12/198 (6%)
Query: 105 KRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELVIAELMFLQWMAPKEPIYIY 154
+ PPPDL SL+L RI+Y+GMPL + VT+L+IA+L++LQ+ P +PIY Y
Sbjct: 17 RTPPPDLESLMLKERIIYLGMPLFSSDDVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFY 76
Query: 155 INSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYM 214
INSTGT+ G+ + E+E FAI D M +K I+T+ +G A+G A ++LSAGTKG R
Sbjct: 77 INSTGTSWYTGDAIGFETEAFAICDTMNYVKPPIHTICIGQAMGTAAMILSAGTKGCRAS 136
Query: 215 TPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETVSNVMKRS 274
PHA ++ Q R + G A+D+ I AKEV+ N+ T++++ +K+T E ++ R+
Sbjct: 137 LPHATIVLNQNRSGARG--QATDIQIRAKEVLSNKQTMLEIFSKNTGQPVEKIAKDTDRT 194
Query: 275 YYMDALLAKEFGVIDKIL 292
+Y+ AKE+G+ID++L
Sbjct: 195 FYLTPQQAKEYGLIDRVL 212
>ref|NP_893430.1| Clp protease proteolytic subunit [Prochlorococcus marinus subsp.
pastoris str. CCMP1986] gi|33640237|emb|CAE19772.1| Clp
protease proteolytic subunit [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 220
Score = 160 bits (406), Expect = 4e-38
Identities = 86/205 (41%), Positives = 131/205 (62%), Gaps = 12/205 (5%)
Query: 98 YSQQRRPKRPPPDLPSLLLNGRIVYIGMPLVPA----------VTELVIAELMFLQWMAP 147
Y + + PPPDLPSLLL RIVY+G+PL VTEL+IA+L++L++ P
Sbjct: 8 YGENTAMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDDP 67
Query: 148 KEPIYIYINSTGTTRADGETVAMESEGFAIYDAMMQMKTEINTVALGAAVGQACLLLSAG 207
+PIY YINSTGT+ G+ V E+E FAI D + +K I+T+ +G A+G A ++LS+G
Sbjct: 68 DKPIYFYINSTGTSWYTGDAVGFETEAFAICDTINYIKPPIHTICIGQAMGTAAVILSSG 127
Query: 208 TKGRRYMTPHAKAMIQQPRVPSSGLRPASDVLIHAKEVMVNRDTLVKLLAKHTENSEETV 267
TKG R PHA ++ QP + G A+D+ I A+EV+ N+ +++++L+++T S E +
Sbjct: 128 TKGHRAALPHASIVLHQPISGARG--QATDIQIRAEEVLKNKKSMLEILSRNTGKSIEEL 185
Query: 268 SNVMKRSYYMDALLAKEFGVIDKIL 292
S R Y++ A ++GVID+IL
Sbjct: 186 SKDSDRMSYLNPQEALDYGVIDRIL 210
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,964,683
Number of Sequences: 2540612
Number of extensions: 22284187
Number of successful extensions: 67934
Number of sequences better than 10.0: 558
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 66514
Number of HSP's gapped (non-prelim): 595
length of query: 322
length of database: 863,360,394
effective HSP length: 128
effective length of query: 194
effective length of database: 538,162,058
effective search space: 104403439252
effective search space used: 104403439252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)
Medicago: description of AC144541.11