BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144538.13 + phase: 0 /pseudo
(1574 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 216 6e-54
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 214 2e-53
gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678... 213 5e-53
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 211 2e-52
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 210 4e-52
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 207 3e-51
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 187 2e-45
gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japon... 171 2e-40
emb|CAB77910.1| putative transposon protein [Arabidopsis thalian... 166 8e-39
ref|NP_909542.1| putative copia-type retrotransposon protein [Or... 166 8e-39
dbj|BAB11308.1| copia-like retroelement pol polyprotein [Arabido... 166 8e-39
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 166 8e-39
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 164 2e-38
emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa (japonica cultivar... 163 5e-38
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 159 9e-37
gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza s... 157 4e-36
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 156 5e-36
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 153 4e-35
ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sati... 153 5e-35
emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar... 152 9e-35
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 216 bits (549), Expect = 6e-54
Identities = 164/583 (28%), Positives = 270/583 (46%), Gaps = 85/583 (14%)
Query: 3 EGGSSNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKK------ 56
EGG NRPP+ +G++Y YWK +M FL+S D+ W V G P D K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 57 KEDWSEEEGKRMLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKET 116
+EDW++EE + L N KA L + + + + C AK+ W+ LK+ HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKIS 125
Query: 117 RIDIGVRKFELFEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRH 176
R+ + KFE +MKE E I + + I N +L + T + VRKILR LP+ +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 177 IVTAITEAKDLKKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFD 236
VTAI EA+D+ +R+++LIGSL+ E+ L D++ KSK +A +N E E ++N D
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGL-SDRAEKKSKNLAFVSNDEGEEDEYDLNTD 244
Query: 237 NQQQELDEEDHQDQIILLTRKLQRMIQRRDQNKR----NFP-----ARKENAKTELDKSQ 287
E + ++LL ++ +++ R D+ ++ N P K K+++ S
Sbjct: 245 --------EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSH 296
Query: 288 ---VTCYGCYKLGHYKNECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDEQADLCLMAK 344
+ C+GC GH ECP ++L+ ++K + E + D D + A
Sbjct: 297 SKGIQCHGCEGYGHIIAECP------THLKKHRKGLSVCQSDTESEQESDSDRD--VNAL 348
Query: 345 SDNEEVNLDPCSSCEKTEHLFDNLFYSSQMLEQECERLRNENLELRKEKEILEKENKDLI 404
+ E D SS +E FD L S + L + E++ + +L+K LE E
Sbjct: 349 TGIFETAED--SSDTDSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAE----- 401
Query: 405 KNIQHSESKEVSENKNNSQKENIILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFDKA 464
+ + +E+SE K E L + + I K ++T +++ + ++
Sbjct: 402 ---KEAHKEEISELKG----EVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQR 454
Query: 465 CIGFKTNQKQKLYENFFIPKKN-------------------KNTCERYKCTYCEKYGHLE 505
+GF + F+P KN K+ ++++C YC KYGH++
Sbjct: 455 GLGFNPKSAGRTTMTEFVPAKNRTGATMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIK 514
Query: 506 PFCFRKRKRLASQKFKNNYTNFHKKETLNNTNHQGPKKIWVPK 548
PFC+ +Q +++ K +WVPK
Sbjct: 515 PFCYHLHPHHGTQ-----------------SSNSRKKMMWVPK 540
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 214 bits (544), Expect = 2e-53
Identities = 164/583 (28%), Positives = 273/583 (46%), Gaps = 83/583 (14%)
Query: 3 EGGSSNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKK------ 56
EGG NRPP+ +G++Y YWK +M FL+S D+ W V G P D K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 57 KEDWSEEEGKRMLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKET 116
+EDW++EE + L N KA L + + + + C AK+ W+ LK+ HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMS 125
Query: 117 RIDIGVRKFELFEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRH 176
R+ + KFE +MKE E I + + I N +L + T + VRKILR LP+ +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 177 IVTAITEAKDLKKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFD 236
VTAI EA+D+ +R+++LIGSL+ E+ L D++ KSK +A +N E E +++ D
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGL-SDRAEKKSKNLAFVSNDEGEEDEYDLDTD 244
Query: 237 NQQQELDEEDHQDQIILLTRKLQRMIQRRDQNKR----NFP-----ARKENAKTELDKSQ 287
E + ++LL ++ +++ R D+ ++ N P K ++++ S
Sbjct: 245 --------EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSH 296
Query: 288 ---VTCYGCYKLGHYKNECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDEQADLCLMAK 344
+ C+GC GH ECP ++L+ ++K + E + D D + A
Sbjct: 297 SKGIQCHGCEGYGHIIAECP------THLKKHRKGLSVCQSDTESEQESDSDRD--VNAL 348
Query: 345 SDNEEVNLDPCSSCEKTEHLFDNLFYSSQMLEQECERLRNENLELRKEKEILEKENKDLI 404
+ E D SS +E FD L S + L + E++ + +L+K LE E
Sbjct: 349 TGIFETAED--SSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAE----- 401
Query: 405 KNIQHSESKEVSENKNNSQKENIILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFDKA 464
+ + +E+SE K E L + +K I K ++T +++ + ++
Sbjct: 402 ---KEAHEEEISELKG----EVGFLNSKLETMKKSIKMLNKGSDTLDEVLLLGKNAGNQR 454
Query: 465 CIGFKTNQKQKLYENFFIPKKN-------------------KNTCERYKCTYCEKYGHLE 505
+GF + F+P KN K+ ++++C YC KYGH++
Sbjct: 455 GLGFNPKFAGRTTMTEFVPAKNRTGTTMSQHLSRHHGTQQKKSKRKKWRCHYCGKYGHIK 514
Query: 506 PFCFRKRKRLASQKFKNNYTNFHKKETLNNTNHQGPKKIWVPK 548
PFC+ + + H ++N + K +WVPK
Sbjct: 515 PFCY--------------HLHGHPHHGTQSSNSR-KKMMWVPK 542
>gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
gag-proteinase polyprotein - soybean retrovirus-like
element
Length = 640
Score = 213 bits (541), Expect = 5e-53
Identities = 157/544 (28%), Positives = 256/544 (46%), Gaps = 67/544 (12%)
Query: 3 EGGSSNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKK------ 56
EGG NRPP+ +GT+Y YWK +M FL+S D+ W V P D K
Sbjct: 6 EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKP 65
Query: 57 KEDWSEEEGKRMLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKET 116
+EDW++EE + L N KA L + + + + C AK+ W+ LK HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMS 125
Query: 117 RIDIGVRKFELFEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRH 176
R+ + KFE +MKE E I + + I N +L + T + VRKILR LP+ +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDM 185
Query: 177 IVTAITEAKDLKKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFD 236
VTAI EA+D+ LR+++LIGSL+ E+ L D++ KSK +A +N E E +++ D
Sbjct: 186 KVTAIEEAQDICNLRVDELIGSLQTFELGL-SDRTEKKSKNLAFVSNDEGEEDEYDLDTD 244
Query: 237 NQQQELDEEDHQDQIILLTRKLQRMIQRRDQNK----RNFP--------ARKENAKTELD 284
E + ++LL ++ +++ R D+ + RN P +K + +
Sbjct: 245 --------EGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSH 296
Query: 285 KSQVTCYGCYKLGHYKNECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDEQADLCLMAK 344
C+GC GH K ECP + +K Q S + D EQ ++ ++ L +
Sbjct: 297 SKGFQCHGCEGYGHIKAECPTHLKK----QRKGLSVCRSDDTESEQESDSDRDVNALTGR 352
Query: 345 SDNEEVNLDPCSSCEKTEHLFDNLFYSSQMLEQECERLRNENLELRKEKEILEKENKDLI 404
++ E + D S E FD L S + L + E++ + +L+K LE E
Sbjct: 353 FESAEDSSDTDS-----EITFDELATSYRELCIKSEKILQQEAQLKKVIANLEAE----- 402
Query: 405 KNIQHSESKEVSENKNNSQKENIILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFDKA 464
+ + +E+SE K E L + + I K ++ +++ +V ++
Sbjct: 403 ---KEAHEEEISELKG----EVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQR 455
Query: 465 CIGFKTNQKQKLYENFFIPKK-------------------NKNTCERYKCTYCEKYGHLE 505
+GF ++ F+P K K+ ++++C YC KYGH++
Sbjct: 456 GLGFNHKSAGRITMTEFVPAKISTGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIK 515
Query: 506 PFCF 509
PFC+
Sbjct: 516 PFCY 519
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 211 bits (536), Expect = 2e-52
Identities = 171/594 (28%), Positives = 274/594 (45%), Gaps = 94/594 (15%)
Query: 3 EGGSSNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDL-----NE-KK 56
EGG NRPP+ +GT+Y YWK +M FL+S D+ W V G P D NE K
Sbjct: 6 EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKP 65
Query: 57 KEDWSEEEGKRMLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKET 116
+EDW++EE + L N KA L + + + + C AK+ W+ LK HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMS 125
Query: 117 RIDIGVRKFELFEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRH 176
R+ + KFE +MKE E I + + I N +L + T + VRKILR LP+ +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDM 185
Query: 177 IVTAITEAKDLKKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFD 236
VTAI EA+D+ +R+++LIGSL+ E+ L D++ KSK +A +N E E +++ D
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGL-SDRTEKKSKNLAFVSNDEGEEDEYDLDTD 244
Query: 237 NQQQELDEEDHQDQIILLTRKLQRMIQRRDQNK----RNFP---------ARKENAKTEL 283
E + ++ L ++ +++ R D+ + RN RK + K
Sbjct: 245 --------EGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNISLDIRKGSEYQRKSDEKPSH 296
Query: 284 DKSQVTCYGCYKLGHYKNECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDEQADLCLMA 343
K + C GC GH K ECP + +K Q S + D EQ ++ ++ L
Sbjct: 297 SKG-IQCRGCEGYGHIKAECPTHLKK----QRKGLSVCRSDDTESEQESDSDRDVNALTG 351
Query: 344 KSDNEEVNLDPCSSCEKTEHLFDNLFYSSQMLEQECERLRNENLELRKEKEILEKENKDL 403
+ ++ E + D S E FD L + L + E++ + +L+K LE E
Sbjct: 352 RFESAEDSSDTDS-----EITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAE---- 402
Query: 404 IKNIQHSESKEVSENKN-----NSQKENIILKENVLKLKNDISNFVKSTETFQKIMGSQV 458
+ + +E+S+ K NS+ EN+ +K+ N S+ + K +G+Q
Sbjct: 403 ----KEAHEEEISKLKGEVGFLNSKLENM---TKSIKMLNKGSDMLDZVLQLGKKVGNQR 455
Query: 459 SVFDKACIGFKTNQKQKLYENFFIPKKN-------------------KNTCERYKCTYCE 499
+GF + F+P KN ++ ++++C YC
Sbjct: 456 G------LGFNHKSAGRTTMTEFVPAKNSTGATMSQHRSRHHGTQQKRSKRKKWRCHYCG 509
Query: 500 KYGHLEPFCFRKRKRLASQKFKNNYTNFHKKETLNNTNHQGPKKIWVPKALLTS 553
KYGH++PFC+ + + H ++ G K +WVPK + S
Sbjct: 510 KYGHIKPFCY--------------HLHGHPHHGTQGSS-SGRKMMWVPKHKIVS 548
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 210 bits (534), Expect = 4e-52
Identities = 168/590 (28%), Positives = 275/590 (46%), Gaps = 87/590 (14%)
Query: 3 EGGSSNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDL-----NE-KK 56
EGG NRPP+ +GT+Y YWK +M FL+S D+ W V G P D NE K
Sbjct: 6 EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKP 65
Query: 57 KEDWSEEEGKRMLLNFKAKLFLTMALSREEYDRVQECKNAKEIW-DTLKVHHEGTSHVKE 115
+EDW++EE + L N KA L + + + + C AK+ + LK HEGTS VK
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKM 125
Query: 116 TRIDIGVRKFELFEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWR 175
+R+ + KFE +MKE E I + + I N +L + T + VRKILR LP+ +
Sbjct: 126 SRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFD 185
Query: 176 HIVTAITEAKDLKKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNF 235
VTAI EA+D+ +R+++LIGSL+ E+ L D++ KSK +A +N E E +++
Sbjct: 186 MKVTAIEEAQDICNMRVDELIGSLQTFELGL-SDRNEKKSKNLAFVSNDEGEEDEYDLDT 244
Query: 236 DNQQQELDEEDHQDQIILLTRKLQRMIQRRDQNK----RNFP---------ARKENAKTE 282
D E + + LL ++ +++ R D+ + RN P +K + K
Sbjct: 245 D--------EGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYHKKSDEKPS 296
Query: 283 LDKSQVTCYGCYKLGHYKNECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDEQADLCLM 342
K + C+GC GH K ECP + +K Q S + D EQ ++ ++ L
Sbjct: 297 HSKG-IQCHGCEGYGHIKAECPTHLKK----QRKGLSVCRSDDTESEQESDSDRDVNALT 351
Query: 343 AKSDNEEVNLDPCSSCEKTEHLFDNLFYSSQMLEQECERLRNENLELRKEKEILEKENKD 402
+ +++E + D E FD L S + L + E++ + +L+K LE E
Sbjct: 352 GRFESDEDSSD-------IEITFDELAISYRKLCIKSEKILQQEAQLKKVIANLEAE--- 401
Query: 403 LIKNIQHSESKEVSENKNNSQKENIILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFD 462
+ + +E+SE K E L + + I K ++ +++ +V +
Sbjct: 402 -----KEAHEEEISELKG----EVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGN 452
Query: 463 KACIGFKTNQKQKLYENFFIPKKN-------------------KNTCERYKCTYCEKYGH 503
+ +GF ++ F+P KN K+ ++++C YC KYGH
Sbjct: 453 QRGLGFNHKSACRITMTEFVPAKNSTGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGH 512
Query: 504 LEPFCFRKRKRLASQKFKNNYTNFHKKETLNNTNHQGPKKIWVPKALLTS 553
++PFC+ + + H +++ G K +WVPK + S
Sbjct: 513 IKPFCY--------------HLHGHPHHGTQSSS-SGRKMMWVPKHKIVS 547
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 207 bits (526), Expect = 3e-51
Identities = 161/584 (27%), Positives = 270/584 (45%), Gaps = 85/584 (14%)
Query: 3 EGGSSNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKK------ 56
EGG NRPP+ +G++Y YWK +M FL+S D+ W V G P D K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 57 KEDWSEEEGKRMLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKET 116
+EDW++EE + L N KA L + + + + C AK+ + LK HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMS 125
Query: 117 RIDIGVRKFELFEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRH 176
R+ + KFE +MKE E I + + I N +L + T + VRKILR LP+ +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 177 IVTAITEAKDLKKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFD 236
VTAI EA+D+ +R+++LIGSL+ E+ L D++ KSK +A +N E E +++ D
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGL-SDRAEKKSKNLAFVSNDEGEEDEYDLDTD 244
Query: 237 NQQQELDEEDHQDQIILLTRKLQRMIQRRDQNKR----NFP-----ARKENAKTELDKSQ 287
E + ++LL ++ +++ R D+ ++ N P K ++++ S
Sbjct: 245 --------EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSH 296
Query: 288 ---VTCYGCYKLGHYKNECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDEQADL-CLMA 343
+ C+GC GH ECP ++L+ ++K + E + D D+ L+
Sbjct: 297 SKGIQCHGCEGYGHIIAECP------THLKKHRKGLSVCQSDTESEQESDSDRDVNALIG 350
Query: 344 KSDNEEVNLDPCSSCEKTEHLFDNLFYSSQMLEQECERLRNENLELRKEKEILEKENKDL 403
+ E + D S E FD L S + L + E++ + +L+K LE E
Sbjct: 351 IFETAEDSSDTDS-----EITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAE---- 401
Query: 404 IKNIQHSESKEVSENKNNSQKENIILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFDK 463
+ + +E+SE K E L + + I K ++T +++ + ++
Sbjct: 402 ----KEAHKEEISELKG----EVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQ 453
Query: 464 ACIGFKTNQKQKLYENFFIPKKN-------------------KNTCERYKCTYCEKYGHL 504
+GF + F+P KN K+ ++++C YC KYGH+
Sbjct: 454 RGLGFNPKSAGRTTMTEFVPAKNRTGATMSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHI 513
Query: 505 EPFCFRKRKRLASQKFKNNYTNFHKKETLNNTNHQGPKKIWVPK 548
+PFC+ + + H ++N + K +WVPK
Sbjct: 514 KPFCY--------------HLHGHPHHGTQSSNSR-KKMMWVPK 542
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 187 bits (476), Expect = 2e-45
Identities = 155/561 (27%), Positives = 255/561 (44%), Gaps = 82/561 (14%)
Query: 25 MELFLQS*DNHMWTVVENGNYIPYDEDL-----NE-KKKEDWSEEEGKRMLLNFKAKLFL 78
M FL+S D+ W V G P D NE K +EDW++EE + L N KA L
Sbjct: 1 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 60
Query: 79 TMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFELFEMKETETIDE 138
+ + + + C AK+ W+ LK HEGTS VK +R+ + KFE +MKE E I E
Sbjct: 61 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHE 120
Query: 139 MYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDLKKLRLEDLIGS 198
+ I N +L + T + VRKILR LP+ + VTAI EA+D+ +R+++LIGS
Sbjct: 121 FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 180
Query: 199 LKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFDNQQQELDEEDHQDQIILLTRKL 258
L+ E+ L D++ KSK +A +N E E +++ D E + ++LL ++
Sbjct: 181 LQTFELGL-SDRTEKKSKNLAFVSNDEGEEDEYDLDTD--------EGLTNAVVLLGKQF 231
Query: 259 QRMIQRRDQNK----RNFP--------ARKENAKTELDKSQVTCYGCYKLGHYKNECPLN 306
+++ R D+ + RN P +K + + + C+GC GH K ECP +
Sbjct: 232 NKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGIQCHGCEGYGHIKAECPTH 291
Query: 307 KRKSSNLQTNQKSFMTTWDEPEEQTNEDEQADLCLMAKSDNEEVNLDPCSSCEKTEHLFD 366
+K Q S + D EQ ++ ++ L + ++ E + D S E FD
Sbjct: 292 LKK----QRKGLSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDS-----EITFD 342
Query: 367 NLFYSSQMLEQECERLRNENLELRKEKEILEKENKDLIKNIQHSESKEVSENKNNSQKEN 426
L S + L + E++ + +L+K LE E + + E+SE K E
Sbjct: 343 ELAISYRELCIKSEKILQQEAQLKKVIANLEAE--------KEAHEDEISELKG----EI 390
Query: 427 IILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFDKACIGFKTNQKQKLYENFFIPKKN 486
L + + I K ++ +++ +V ++ +GF + F+P KN
Sbjct: 391 GFLNSKLENMTKSIKMLNKGSDLLDEVLQLGKNVGNQRGLGFNHKSAGRTTMTEFVPAKN 450
Query: 487 -------------------KNTCERYKCTYCEKYGHLEPFCFRKRKRLASQKFKNNYTNF 527
K+ ++++C YC KYGH++PFC+ + +
Sbjct: 451 STGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCY--------------HLHG 496
Query: 528 HKKETLNNTNHQGPKKIWVPK 548
H +++ G K +WVPK
Sbjct: 497 HPHHGTQSSS-SGRKMMWVPK 516
>gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530636|ref|NP_919620.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042890|gb|AAM08718.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 1627
Score = 171 bits (433), Expect = 2e-40
Identities = 148/560 (26%), Positives = 257/560 (45%), Gaps = 90/560 (16%)
Query: 9 RPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGKRM 68
+ P+F GT+Y WK KM L++ H+W++V+ G I +E + +
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAIT---------GTPLTEIDHCNL 60
Query: 69 LLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFELF 128
LN +A L + S+EE+DRV + A EIW+ L HEGTS K+ ++ ++E F
Sbjct: 61 QLNAQAMNALFNSFSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETF 120
Query: 129 EMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDLK 188
M E++++MYGR +I+N+L+ L +T E +K+LR LP+ + +VT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRALPKKYETLVTMLINS-DMS 179
Query: 189 KLRLEDLIGSLKAHEVL----LQEDKSSNKSKMIALKTNQESLNQELEMNFDNQQQELDE 244
++ L+G + +++ + +++S K IAL+ E D + +++E
Sbjct: 180 RMTPASLLGKINTNDMYKLKKKEMEEASPSKKCIALQAEVE----------DKGKSKVNE 229
Query: 245 --EDHQDQIILLTRKLQRMIQRRDQNKRNFPA-RKENAKTELDKSQVTCYGCYKLGHYKN 301
+D +++I LL R+ ++ RR + R + R+ N + S + C+ C + GH+ +
Sbjct: 230 ANDDLKEEIALLARRFNDLLGRRKERVRGSNSNRRRNRRPNKTLSNLRCFECGEKGHFAS 289
Query: 302 ECP--------LNKRKSSNLQTNQK---------SFMTTWDEPEEQT----NEDEQAD-- 338
+CP +K+KS + +K +F+ WD EE + +E+E D
Sbjct: 290 KCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDA 349
Query: 339 ---------------------LCLMAKSDNEEVNL------DPCS--SCEKTEHLFDNLF 369
LCLMAK ++ +L D C S ++ +F+ L
Sbjct: 350 SSKKKKMAVVVIKEAPTLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELH 409
Query: 370 YSSQMLEQECERLRNENLELRKEKEILEKENKDLI---KNIQHSESKEVSENKNNSQKEN 426
S+ + + L+ ++ L E L+ ++ L K + S S VS + EN
Sbjct: 410 AYSEKEIVKFKALKMDHASLEVLYEELKTSHERLTISHKKLNSSSSSCVSICDASLVVEN 469
Query: 427 IILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFDKACIGF--KTNQKQKLYENFFIPK 484
LKE V KL + T KI+ Q + +K +GF K ++K F+ K
Sbjct: 470 NELKEQVAKLNKSLERCFNGKNTLDKILSEQRCILNKEGLGFIPKKSKKPSHRATRFV-K 528
Query: 485 KNKNTCERYKCTYCEKYGHL 504
N C + YCE GHL
Sbjct: 529 SNGKHCSK----YCE-VGHL 543
>emb|CAB77910.1| putative transposon protein [Arabidopsis thaliana]
gi|4773881|gb|AAD29754.1| putative transposon protein
[Arabidopsis thaliana] gi|25407270|pir||H85055 probable
transposon protein [imported] - Arabidopsis thaliana
Length = 1008
Score = 166 bits (419), Expect = 8e-39
Identities = 141/576 (24%), Positives = 255/576 (43%), Gaps = 88/576 (15%)
Query: 12 LFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPY--DEDLNE--KKKEDWSEEEGKR 67
+ E +Y +WK KM ++ W G P ED + K K+ W++ E +
Sbjct: 15 MLEKGNYGHWKVKMRALIRGLGKEAWIATSIGWKAPVIKGEDGEDVLKTKDQWNDAEEAK 74
Query: 68 MLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFEL 127
N +A + +++ ++ R+Q C++AKE WD L +EGTS VK +RID+ +FE
Sbjct: 75 AKANSRALSLIFNFVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFEN 134
Query: 128 FEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDL 187
M+ETE I+E G+ + I +E +L K + + V+K+LRCLP + TA+ + D
Sbjct: 135 LSMEETENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDT 194
Query: 188 KKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFDNQQQELDEEDH 247
+ E+++G L+A+E+ + K SK +AL + + N+ QEL
Sbjct: 195 DSIDFEEVVGMLQAYELEITSGK-GGYSKGLALAASAKK----------NEIQEL----- 238
Query: 248 QDQIILLTRKLQRMIQRRDQNKRNFPARKENAKTELDKS----QVTCYGCYKLGHYKNEC 303
+D + ++ + R ++R + K+ F R + D+S ++ C+ C GH K EC
Sbjct: 239 KDTMSMMAKDFSRAMRRVE--KKGF-GRNQGTDRYRDRSSKRDEIQCHECQGYGHIKAEC 295
Query: 304 PLNKRKSSN--------------LQTNQKSFMTTWDEPEEQTNEDEQADLC--------- 340
P KRK + + K + E E +N+ + D
Sbjct: 296 PSLKRKDLKCSECNGLGHTKFDCVGSKSKPDKSCSSESESDSNDGDSEDYIKGFVSFVGI 355
Query: 341 ---------LMAKSDNEEVNLDPCSSCEKTEHL---FDNLFYSSQMLEQE---------- 378
A ++E+ + D S EK ++ F L+ S ML +E
Sbjct: 356 IEEKDESSDSEADGEDEDNSADEDSDIEKDVNINEEFRKLYDSWLMLSKEKVAWLEEKLK 415
Query: 379 ----CERLRNE-------NLELRKEKEILEKENKDLIKNIQHSESKEVSENKNNSQKENI 427
E+L+ E N EL ++ + E++N++L + + + N ++I
Sbjct: 416 VQELTEKLKGELTAANQKNSELIQKCSVAEEKNRELSQELSDTRKNIHMLNSGTKDLDSI 475
Query: 428 ILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFDKACIGFKTN----QKQKLYENFFIP 483
+ V K + + T + S+ + K+ GF++N +++Y+N
Sbjct: 476 LAAGRVGKSNFGLGYNGAGSGTKTNFVRSEAAAPTKSQTGFRSNYDAVPARRVYQN-HDH 534
Query: 484 KKNKNTCERYKCTYCEKYGHLEPFCFRKRKRLASQK 519
+++ T Y+C YC ++GH++ +C+R RL K
Sbjct: 535 YQSRRTVTGYECYYCGRHGHIQRYCYRYAARLNKLK 570
>ref|NP_909542.1| putative copia-type retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|27764656|gb|AAO23081.1| putative
copia-type retrotransposon protein [Oryza sativa
(japonica cultivar-group)]
Length = 1183
Score = 166 bits (419), Expect = 8e-39
Identities = 144/595 (24%), Positives = 254/595 (42%), Gaps = 137/595 (23%)
Query: 9 RPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGKRM 68
+ P+F GT+Y WK KM L++ H+W++V+ G I +E + + +
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAIT---------GTPLTEIDHRNL 60
Query: 69 LLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFELF 128
LN +A L +LS+EE+DRV ++ EIW+ L HEGTS K+ ++ ++E F
Sbjct: 61 QLNAQAMNALFNSLSQEEFDRVSNLESTYEIWNKLAEIHEGTSEYKDAKLHFLEIQYETF 120
Query: 129 EMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDLK 188
M E++++MYGR +I+N+L+ L ++ + E +K+LR LP + +VT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGANYNVLEVAQKMLRALPEKYETLVTMLINS-DMS 179
Query: 189 KLRLEDLIGSLKAHEVL----LQEDKSSNKSKMIALKTNQESLNQELEMNFDNQQQELDE 244
++ L L+G + +++ + +++S K I L+ E D + +++E
Sbjct: 180 RMTLASLLGKINTNDMYKLKKKEMEEASPSKKCIVLQAEVE----------DKGKGKVNE 229
Query: 245 --EDHQDQIILLTRKLQRMIQRRDQNKRNFPA-RKENAKTELDKSQVTCYGCYKLGHYKN 301
ED +++I+LL R+ ++ RR + +R + R+ N + S + C+ C + GH+ +
Sbjct: 230 ANEDLEEEIVLLARRFNDLLGRRKERRRGSNSNRRRNRRPNKTLSNLRCFECGEKGHFAS 289
Query: 302 ECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDEQ------------------ADLCLMA 343
+CP + N ++ EE+ +D A LCLMA
Sbjct: 290 KCPSKDDDADNSASSGS---------EEEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMA 340
Query: 344 KSDNEEVNLDPCSSCEKTEHLF-DNLF--------YSSQ-------------MLEQECER 381
K ++ +L S + + +F D L YS + LE E
Sbjct: 341 KGSSKVTSLSDSESDDDCDDVFYDELVSMFEELHAYSEKEIVKFKALKKDHASLEVLYEE 400
Query: 382 LRNENLELRKEKEILEKENKDLIKNIQHS-----------------------ESKEVSEN 418
L+ + L E L++ + +L+ QH S +S +
Sbjct: 401 LKTSHERLTISHEKLKEAHDNLLSTTQHGALIDVGISCDLLDDSATCHIAHVASSSISTS 460
Query: 419 KNN----------------SQKENIILKENVLKLKNDISNFVKSTETFQKIMGSQVSVFD 462
++ S EN LKE V KL ++ K T KI+ Q + +
Sbjct: 461 CDDLVDMPSSSPCVSICDASLVENNELKEQVAKLNKNLERCFKGKNTLDKILSEQRCILN 520
Query: 463 KACIGFKTNQKQKLYENFFIPKKNKNTCERYK---------CTYCEKYGHLEPFC 508
K +G FIPKK K R C+ C + G+L +C
Sbjct: 521 KEGLG-------------FIPKKGKKPSHRASRFVKNNGKYCSKCREVGNLVNYC 562
>dbj|BAB11308.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1013
Score = 166 bits (419), Expect = 8e-39
Identities = 146/583 (25%), Positives = 258/583 (44%), Gaps = 97/583 (16%)
Query: 12 LFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNE----KKKEDWSEEEGKR 67
+ E +Y +WK KM ++ W G P + N K ++ W++ E +
Sbjct: 15 MLEKGNYGHWKVKMRALIRGLGKEAWIATSVGWKAPVVKGENGEDVLKTEDQWTDAEEAK 74
Query: 68 MLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFEL 127
N +A + ++++ ++ R+Q C++AKE WD L +EGTS VK +RID+ +FE
Sbjct: 75 ATANSRALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFEN 134
Query: 128 FEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDL 187
M E+E I+E G+ + I +E +L K + + V+K+LRCLP + TA+ + D
Sbjct: 135 LTMDESENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDT 194
Query: 188 KKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFDNQQQELDEEDH 247
+ E+++G L+A+E+ + K SK +AL + E N+ QEL
Sbjct: 195 DTIDFEEVVGMLQAYELEITSGKGGY-SKGVALAVSSEK----------NEIQEL----- 238
Query: 248 QDQIILLTRKLQRMIQRRDQNKRNFPARKENAKTELDK--------SQVTCYGCYKLGHY 299
+D + ++ + R ++R + KR F AR + + + D+ S++ C+ C GH
Sbjct: 239 KDSMSMMAKNFSRAMKRVE--KRGF-ARNQGSDRDRDRDRDRNSKRSEIQCHECQGYGHI 295
Query: 300 KNECPLNKRKS-----------------SNLQTNQKSFM--TTWDEPEEQTNEDEQADLC 340
K ECP KRK + +S++ + D +E + ED + +
Sbjct: 296 KAECPSLKRKDLKCSECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGFVS 355
Query: 341 LMAKSDNEEVNLDPCSS---CEKTEHLFDNLFYSSQMLEQECERLRNENLELRKEKEILE 397
+ +++ V+ D S CEK E D+ ++ E +L L L KEK I
Sbjct: 356 FVGIIEDDNVSSDSSDSEVGCEKEEISADDESDVEMDVDGEFRKLYENWLVLSKEKVIWL 415
Query: 398 KENKDLIKNIQHSESKEVSENKNNSQKENIILKENVLKLKN-----DISNFVKSTETFQK 452
+E + + I+ + + N+ S+ +ILK + + KN D+S+ K K
Sbjct: 416 EEKVKVQEQIEQLKGELAVANQIKSE---MILKYSAKEEKNRELSQDLSDTRKKIHMLNK 472
Query: 453 IMGSQVSVFDKACIG--------------FKTN----------QKQKLY--ENFFIPKKN 486
S+ +G KTN Q Q ++ ++ +P +
Sbjct: 473 GTKDLDSILAAGRVGKSNFGLGYHGGGSSTKTNFVRSKAAAPTQSQSVFRSKSNSVPARR 532
Query: 487 K----------NTCERYKCTYCEKYGHLEPFCFRKRKRLASQK 519
K T Y+C YC ++GH++ +C+R RL+ K
Sbjct: 533 KYQNQNHYHSQRTVTGYECYYCGRHGHIQRYCYRYAARLSKLK 575
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 166 bits (419), Expect = 8e-39
Identities = 146/583 (25%), Positives = 258/583 (44%), Gaps = 97/583 (16%)
Query: 12 LFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNE----KKKEDWSEEEGKR 67
+ E +Y +WK KM ++ W G P + N K ++ W++ E +
Sbjct: 15 MLEKGNYGHWKVKMRALIRGLGKEAWIATSVGWKAPVVKGENGEDVLKTEDQWTDAEEAK 74
Query: 68 MLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFEL 127
N +A + ++++ ++ R+Q C++AKE WD L +EGTS VK +RID+ +FE
Sbjct: 75 ATANSRALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFEN 134
Query: 128 FEMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDL 187
M E+E I+E G+ + I +E +L K + + V+K+LRCLP + TA+ + D
Sbjct: 135 LTMDESENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDT 194
Query: 188 KKLRLEDLIGSLKAHEVLLQEDKSSNKSKMIALKTNQESLNQELEMNFDNQQQELDEEDH 247
+ E+++G L+A+E+ + K SK +AL + E N+ QEL
Sbjct: 195 DTIDFEEVVGMLQAYELEITSGKGGY-SKGVALAVSSEK----------NEIQEL----- 238
Query: 248 QDQIILLTRKLQRMIQRRDQNKRNFPARKENAKTELDK--------SQVTCYGCYKLGHY 299
+D + ++ + R ++R + KR F AR + + + D+ S++ C+ C GH
Sbjct: 239 KDSMSMMAKNFSRAMKRVE--KRGF-ARNQGSDRDRDRDRDRNSKRSEIQCHECQGYGHI 295
Query: 300 KNECPLNKRKS-----------------SNLQTNQKSFM--TTWDEPEEQTNEDEQADLC 340
K ECP KRK + +S++ + D +E + ED + +
Sbjct: 296 KAECPSLKRKDLKCSECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGFVS 355
Query: 341 LMAKSDNEEVNLDPCSS---CEKTEHLFDNLFYSSQMLEQECERLRNENLELRKEKEILE 397
+ +++ V+ D S CEK E D+ ++ E +L L L KEK I
Sbjct: 356 FVGIIEDDNVSSDSSDSEVGCEKEEISADDESDVEMDVDGEFRKLYENWLVLSKEKVIWL 415
Query: 398 KENKDLIKNIQHSESKEVSENKNNSQKENIILKENVLKLKN-----DISNFVKSTETFQK 452
+E + + I+ + + N+ S+ +ILK + + KN D+S+ K K
Sbjct: 416 EEKVKVQEQIEQLKGELAVANQIKSE---MILKYSAKEEKNRELSQDLSDTRKKIHMLNK 472
Query: 453 IMGSQVSVFDKACIG--------------FKTN----------QKQKLY--ENFFIPKKN 486
S+ +G KTN Q Q ++ ++ +P +
Sbjct: 473 GTKDLDSILAAGRVGKSNFGLGYHGGGSSTKTNFVRSKAAAPTQSQSVFRSKSNSVPARR 532
Query: 487 K----------NTCERYKCTYCEKYGHLEPFCFRKRKRLASQK 519
K T Y+C YC ++GH++ +C+R RL+ K
Sbjct: 533 KYQNQNHYHSQRTVTGYECYYCGRHGHIQRYCYRYAARLSKLK 575
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 164 bits (415), Expect = 2e-38
Identities = 160/674 (23%), Positives = 284/674 (41%), Gaps = 153/674 (22%)
Query: 9 RPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGKRM 68
+ P+F GT+Y WK KM L++ H+W++V+ G I +E + + +
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAIT---------GTPLTEIDHRNL 60
Query: 69 LLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFELF 128
LN +A L +LS+EE+DRV + A EIW+ L HEGTS K+ ++ ++E F
Sbjct: 61 QLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETF 120
Query: 129 EMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDLK 188
M E++++MYGR +I+N+L+ L ++T E +K+LR LP + VT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETFVTMLINS-DMS 179
Query: 189 KLRLEDLIGSLKAHEVLLQEDK----SSNKSKMIALKTNQESLNQELEMNFDNQQQELDE 244
++ L+G + +++ + K +S K IAL+ E D + +++E
Sbjct: 180 RMTPASLLGKINTNDMYKLKKKEIEEASPSKKCIALQAEVE----------DQSKSKVNE 229
Query: 245 --EDHQDQIILLTRKLQRMIQRRDQNKRNFPA-RKENAKTELDKSQVTCYGCYKLGHYKN 301
ED +++++LL R+ ++ RR + R + R++N + S + C+ C + GH+ +
Sbjct: 230 VNEDLEEEMVLLARRFNDLLGRRKERGRGSNSNRRKNRRPNKTLSNLRCFECGEKGHFAS 289
Query: 302 ECP--------LNKRKSSNLQTNQK---------SFMTTWDEPEEQT----NEDEQAD-- 338
+CP +K+KS + +K +F+ WD EE + +E+E D
Sbjct: 290 KCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDA 349
Query: 339 ---------------------LCLMAKSDNEEVNL------DPCS--SCEKTEHLFDNLF 369
LCLMAK ++ +L D C S ++ +F+ L
Sbjct: 350 SSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELH 409
Query: 370 YSSQ--------------MLEQECERLRNENLELRKEKEILEKENKDLIKNIQHS----- 410
S+ LE E L+ + L E L++ + +L+ QH
Sbjct: 410 TYSEKEIVKFKALKKDHASLEVLYEELKTTHERLTISHEKLKEAHDNLLSTTQHGAHIDV 469
Query: 411 ------------------ESKEVSENKNNSQ----------------KENIILKEN---- 432
S +S + +N +++++ N
Sbjct: 470 DISCDLLDDSATCHIAHVASSSISTSCDNLMDMPSPCSSSSSCVSICDASLVVENNELKE 529
Query: 433 -VLKLKNDISNFVKSTETFQKIMGSQVSVFDKACIGF--KTNQKQKLYENFFIPKKNKNT 489
V KL + K T KI+ Q + +K +GF K +K + F+ + K
Sbjct: 530 QVSKLNKSLERCFKGKNTLDKILSEQRCILNKEGLGFIPKKGKKPSHHATRFVKRNGK-- 587
Query: 490 CERYKCTYCEKYGHLEPFCFRKRKRLASQKFKNNYTNFHKKETLNNTNHQG-------PK 542
C+ C + GHL C K + F ++Y + + G
Sbjct: 588 ----YCSKCREVGHLVSDC-PGSKPPKTCMFDSHYMLKKAHDGSIVARYVGSPILGGKKN 642
Query: 543 KIWVPKALLTSTAG 556
IWVPKAL+++ G
Sbjct: 643 AIWVPKALVSNLQG 656
>emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa (japonica cultivar-group)]
gi|38346854|emb|CAD39936.2| OSJNBa0091C12.14 [Oryza
sativa (japonica cultivar-group)]
gi|50921857|ref|XP_471289.1| OSJNBa0091C12.14 [Oryza
sativa (japonica cultivar-group)]
Length = 393
Score = 163 bits (412), Expect = 5e-38
Identities = 117/364 (32%), Positives = 195/364 (53%), Gaps = 40/364 (10%)
Query: 7 SNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGK 66
S++ P F GTDY WK KM++ L+S + +W +VE G + ED KED +E K
Sbjct: 33 SSKAPYFNGTDYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPED---PTKED---DENK 86
Query: 67 RMLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFE 126
N +A + ALS E++RV ++AK IWDTL+ HEGT V+E++++I +FE
Sbjct: 87 HK--NAQAANAILSALSGSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESKVEIFKGQFE 144
Query: 127 LFEMKETETIDEMYGRFTIIMNELRSL-EKDFTIHERVRKILRCLPRSWRHIVTAITEAK 185
F M + E+ +MY R + I+NE++ L KD T V+K++R + +VT I E
Sbjct: 145 RFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRERP 204
Query: 186 DLKKLRLEDLIGSLKAHEVLLQEDK-----------SSNKSKMIALKTNQESLNQELEMN 234
D K L DL+G + AH++L+QE K +S K + +ALK +E E E +
Sbjct: 205 DYKTLTPHDLLGRILAHDILVQESKEVIQYINQSSTTSIKKEDLALKAKEE----EEESH 260
Query: 235 FDNQQQELDEEDHQDQIILLTRKLQRMIQRRDQNKRNFPARKENAKTELDKSQVTCYGCY 294
++E+D+E +++L +K + ++R K N ++ ++K+ S CY C
Sbjct: 261 KSKSKEEIDDE----EMVLFVKKFGKFMRRSGFFKGN-SSKHHSSKSSGRHSARVCYVCK 315
Query: 295 KLGHYKNECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDE-----QADLCLMAKSDNEE 349
+ GH+ +CP + + S+++ ++K DE +E+ + QA L ++ SD+E
Sbjct: 316 EPGHFIADCP-HLKDGSHIKEDKKK-----DEKKEKYKHSKREHYGQAHLGMIFSSDSES 369
Query: 350 VNLD 353
+ D
Sbjct: 370 SSSD 373
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 159 bits (401), Expect = 9e-37
Identities = 152/619 (24%), Positives = 258/619 (41%), Gaps = 159/619 (25%)
Query: 12 LFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGKRMLLN 71
+F GT+Y WK KM L++ H+W++V+ G I + E + + + LN
Sbjct: 1 MFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAITGTPLM---------EIDHRNLQLN 51
Query: 72 FKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFELFEMK 131
+A L +LS+EE+DRV + A EIW+ L HE TS K+ ++ ++E F M
Sbjct: 52 AQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEDTSEYKDAKLHFLKIQYETFSML 111
Query: 132 ETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDLKKLR 191
E++++MYGR +I+N+L+ L ++T E +K+LR LP + +VT + + D+ ++
Sbjct: 112 PHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINS-DMSRMT 170
Query: 192 LEDLIGSLKAHEVLLQEDK----SSNKSKMIALKTNQESLNQELEMNFDNQQQELDE--E 245
L+G + +++ + K +S+ K IAL+ E D + +++E E
Sbjct: 171 PASLLGKINTNDMYKLKKKEMEEASSSKKCIALQAEVE----------DKSKSKVNEVNE 220
Query: 246 DHQDQIILLTRKLQRMIQRRDQNKRNFPA-RKENAKTELDKSQVTCYGCYKLGHYKNECP 304
D +++++LL RK ++ RR + R + R+ N + S + C+ C + GH+ ++CP
Sbjct: 221 DLEEEMVLLARKFNDLLGRRKERGRGSNSNRRRNRRPNKTFSNLRCFECCEKGHFASKCP 280
Query: 305 L--------NKRKSSNLQTNQK---------SFMTTWDEPEEQT----NEDEQAD----- 338
+K+KS + +K +F+ WD EE + +E+E D
Sbjct: 281 SKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSTSSGSEEEGGDDASSK 340
Query: 339 ------------------LCLMAKSDNEEVNL------DPCS--SCEKTEHLFDNLFYSS 372
LCLMAK ++ +L D C S ++ +F+ L S
Sbjct: 341 KKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELHAYS 400
Query: 373 QM--------------LEQECERLRNENLELRKEKEILEKENKDLIKNIQHSESKEV--- 415
+ LE E L+ + L E L++ + +L+ QH +V
Sbjct: 401 EKEIVKFKALKKDHASLEVLYEELKISHERLTISHEKLKEAHDNLLSTTQHGAHIDVGIS 460
Query: 416 -------------------------------SENKNNSQ----------KENIILKENVL 434
S + ++S EN LKE V
Sbjct: 461 CDLLDDNATCHIAHVASSSISTSCDDLMDMPSPSSSSSSCVSICDASFVVENNELKEQVA 520
Query: 435 KLKNDISNFVKSTETFQKIMGSQVSVFDKACIGFKTNQKQKLYENFFIPKKNKNTCERYK 494
KL + K T KI+ Q + +K G FIPKK K R
Sbjct: 521 KLNKSLERCFKGKNTLDKILSEQRFILNKEGFG-------------FIPKKGKKPSHRAT 567
Query: 495 ---------CTYCEKYGHL 504
C+ C + GHL
Sbjct: 568 RFVKSNGKYCSKCREVGHL 586
>gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 157 bits (396), Expect = 4e-36
Identities = 144/526 (27%), Positives = 235/526 (44%), Gaps = 98/526 (18%)
Query: 7 SNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGK 66
S + P F GTDY WK KM++ L+S + +W +VE G + +K ED ++E+ +
Sbjct: 33 SGKAPYFNGTDYAAWKHKMKMHLKSINPSIWRIVEKGYVL--------QKPEDPTKEDDE 84
Query: 67 RMLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFE 126
N +A + ALS E++RV + ++AK IWDTL+ HEGT V+E++++I +FE
Sbjct: 85 NEHKNAQAANVILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRESKVEILKGQFE 144
Query: 127 LFEMKETETIDEMYGRFTIIMNELRSL-EKDFTIHERVRKILRCLPRSWRHIVTAITEAK 185
F M + E+ +MY + I+NE++ L KD T V+K++R + +VT I E
Sbjct: 145 RFVMLDGESPSDMYDHLSKIVNEIKGLGSKDMTDEVVVKKMVRAITLRNSTLVTIIRERP 204
Query: 186 DLKKLRLEDLIGSLKAHEVLLQEDK-----------SSNKSKMIALKTNQESLNQELEMN 234
D K L DL+G + AH++L+QE K +S K + +ALK +E E E
Sbjct: 205 DYKTLTPHDLLGRILAHDMLVQESKEVIQYINQSSTTSIKKEDLALKAKEE----EEESR 260
Query: 235 FDNQQQELDEEDHQDQIILLTRKLQRMIQRRDQNKRNFPARKENAKTELDKSQVTCYGCY 294
++E+D+E ++ L +K + ++R K + N + ++V CY C
Sbjct: 261 KSKSKEEIDDE----EMTLFVKKFGKFMRRSGFFKGSSSKHHSNKLSGRHSARV-CYVCK 315
Query: 295 KLGHYKNECPLNK------------------------------------------RKSSN 312
+ GH+ +CP K SS+
Sbjct: 316 EPGHFIADCPYLKDGSHIKEDKMGEKKDEKKEKHKHSKRERYGQAHLGKIFGSDSESSSS 375
Query: 313 LQTNQKSFMTTWDEPEEQTN--EDEQADLCLMAK-----SDNEEVNLDPCSSCE------ 359
+ +F P N DE A +CLMAK S + N+D S E
Sbjct: 376 DEEGIATFAVKPSSPPRLFNYSSDEDAPICLMAKEPKVPSSLKSFNVDLVSDEEDDVEDE 435
Query: 360 -KTEHLF-----DNLFYSSQML---EQECERLRNENLELRKEKEILEKENKDLIKNIQHS 410
E LF ++L + S++L E + L + L +EKE + +L K + +
Sbjct: 436 VMDEELFKSITKESLPHLSELLGRIEDQYATLERQEALLIREKERSHELKGELAKEREKN 495
Query: 411 ES-----KEVSENKNNSQKENIILKENVLKLKNDISNFVKSTETFQ 451
E+ K+ E+ N + N L+E V L + + ET +
Sbjct: 496 EALVRLYKQTKESHANLEVTNAQLQERVDGLDKAYLSLEEKFETLK 541
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 156 bits (395), Expect = 5e-36
Identities = 145/598 (24%), Positives = 253/598 (42%), Gaps = 139/598 (23%)
Query: 9 RPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGKRM 68
+ P+F GT+Y WK KM L++ H+W++V G I +E + + +
Sbjct: 10 KAPIFNGTNYSTWKIKMSTHLKAMSFHIWSIVYVGFAIT---------GTPLTEIDHRNL 60
Query: 69 LLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFELF 128
LN +A L +LS+EE+DRV + A EIW+ L HEGTS K+ ++ ++E F
Sbjct: 61 QLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETF 120
Query: 129 EMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDLK 188
M E++++MYGR +I+N+L+ L ++T E +K+LR LP + +VT + + D+
Sbjct: 121 YMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINS-DMS 179
Query: 189 KLRLEDLIGSLKAHEVL----LQEDKSSNKSKMIALKTNQESLNQELEMNFDNQQQELDE 244
++ L+G + +++ + +++S K IAL+ E D + +++E
Sbjct: 180 RMTPASLLGKINTNDMYKLKKKEMEEASPSKKCIALQAEVE----------DKSKSKVNE 229
Query: 245 --EDHQDQIILLTRKLQRMIQRRDQNKRNFPA-RKENAKTELDKSQVTCYGCYKLGHYKN 301
ED ++++ILL R+ +++RR + R + R+ N + S + C+ + GH+ +
Sbjct: 230 VNEDLEEEMILLARRFNDLLERRKERGRGSNSNRRRNRRLNKTLSNLRCFEYGEKGHFAS 289
Query: 302 ECP--------LNKRKSSNLQTNQK---------SFMTTWDEPEEQT----NEDEQAD-- 338
+CP +K+KS + +K +F+ WD EE + +E+E D
Sbjct: 290 KCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDA 349
Query: 339 ---------------------LCLMAKSDNEEVNL------DPCS--SCEKTEHLFDNLF 369
LCLMAK ++ +L D C S E+ +F+ L
Sbjct: 350 SSKKKKMVVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYEELVSMFEELH 409
Query: 370 YSSQ--------------MLEQECERLRNENLELRKEKEILEKENKDLIKNIQH------ 409
S+ L+ E L+ N L E L++ + +L+ QH
Sbjct: 410 AYSEKEIVKFKALNKDYASLDVLYEELKTSNERLTISHEKLKEAHDNLLSTTQHGAHIDV 469
Query: 410 --------------------------------------SESKEVSENKNNSQKENIILKE 431
S S VS + EN KE
Sbjct: 470 GISCDLLDDSATCHIAHVASSSISTSCDDLMDMPSPCSSSSSCVSICDASLVVENNEFKE 529
Query: 432 NVLKLKNDISNFVKSTETFQKIMGSQVSVFDKACIGF--KTNQKQKLYENFFIPKKNK 487
V KL + K T KI+ Q + +K +GF K +K + F+ + +
Sbjct: 530 QVAKLNKSLERCFKGKNTLDKILSEQRCILNKEGLGFIPKKGKKPSHHATHFVKRNGR 587
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 153 bits (387), Expect = 4e-35
Identities = 121/467 (25%), Positives = 222/467 (46%), Gaps = 79/467 (16%)
Query: 9 RPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGKRM 68
+ P+F GT+Y WK KM L++ H+W++V+ G I +E + + +
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAIT---------GTPLTEIDHRNL 60
Query: 69 LLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFELF 128
LN +A L +LS+EE+DRV + A EIW+ L HEGTS K+ ++ ++E F
Sbjct: 61 QLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQYETF 120
Query: 129 EMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDLK 188
M E++++MYGR +I+N+L+ L ++T E +K+LR LP + +VT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTMLINS-DMS 179
Query: 189 KLRLEDLIGSLKAHEVL----LQEDKSSNKSKMIALKTNQESLNQELEMNFDNQQQELDE 244
++ L+G + +++ + +++S K IAL+ E + ++N + L+E
Sbjct: 180 RMTPASLLGKINTNDMYKLKKKEMEEASPSKKCIALQAEVEDKGKVNDVN-----KNLEE 234
Query: 245 EDHQDQIILLTRKLQRMI-QRRDQNKRNFPARKENAKTELDKSQVTCYGCYKLGHYKNEC 303
E I LL R+ + +R+++ K + R+ N + S + C+ C + GH+ ++C
Sbjct: 235 E-----IALLARRFNDFLGRRKERGKGSNSNRRRNKRPNKTLSNLRCFECGEKGHFASKC 289
Query: 304 P--------LNKRKSSNLQTNQK---------SFMTTWDEPEEQT----NEDEQAD---- 338
P +K+KS + +K +F+ WD EE + +++E D
Sbjct: 290 PSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEEDGDDASS 349
Query: 339 -------------------LCLMAKSDNEEVNL------DPCS--SCEKTEHLFDNLFYS 371
LCLMAK ++ +L D C S ++ +F+ L
Sbjct: 350 KKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDISYDELVSMFEELHAY 409
Query: 372 SQMLEQECERLRNENLELRKEKEILEKENKDLIKNIQHSESKEVSEN 418
S+ + + L+ ++ L E L+ ++ L I H + KE +N
Sbjct: 410 SEKEIVKFKALKKDHASLEVLYEELKTSHERL--TISHEKLKEAHDN 454
>ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|29126367|gb|AAO66559.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 153 bits (386), Expect = 5e-35
Identities = 111/357 (31%), Positives = 187/357 (52%), Gaps = 22/357 (6%)
Query: 7 SNRPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGK 66
S + P F GTDY WK KM++ L+S + +W +VE G + E N K++D +E +
Sbjct: 33 SGKAPYFNGTDYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPE--NPTKEDDENEHK-- 88
Query: 67 RMLLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFE 126
N +A + ALS E++RV + ++AK IWDTL+ HEGT V+E++++I +FE
Sbjct: 89 ----NAQAANAILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRESKVEILKGQFE 144
Query: 127 LFEMKETETIDEMYGRFTIIMNELRSL-EKDFTIHERVRKILRCLPRSWRHIVTAITEAK 185
F M + E+ +MY R + I+NE++ L KD T V+K++R + +VT I E
Sbjct: 145 RFIMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRERP 204
Query: 186 DLKKLRLEDLIGSLKAHEVLLQEDKS----SNKSKMIALKTNQESLNQELEMNFDNQQQE 241
D K L DL+G + AH++L+QE K N+S +K +L + E +N++ +
Sbjct: 205 DYKTLTPHDLLGRILAHDMLVQESKDVIQYINQSSTTNIKKEDLALKAK-EEEEENRKSK 263
Query: 242 LDEEDHQDQIILLTRKLQRMIQRRDQNKRNFPARKENAKTELDKSQVTCYGCYKLGHYKN 301
E +++ L +K + ++R K N K+ S CY C + GH+
Sbjct: 264 SKAEIDDEEMALFVKKFGKFMRRSGFFKGGSSKHYSN-KSSGRHSARMCYVCKEPGHFIA 322
Query: 302 ECPLNKRKSSNLQTNQKSFMTTWDEPEEQTNEDE-----QADLCLMAKSDNEEVNLD 353
+CP + + S+++ ++K DE +E+ + QA L ++ SD+E + D
Sbjct: 323 DCP-HLKDGSHIKEDKKKGEKK-DEKKEKHKYSKWEHYGQAHLGMIFGSDSESSSSD 377
>emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar-group)]
gi|50923981|ref|XP_472351.1| OSJNBb0014D23.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1475
Score = 152 bits (384), Expect = 9e-35
Identities = 122/469 (26%), Positives = 221/469 (47%), Gaps = 81/469 (17%)
Query: 9 RPPLFEGTDYYYWKGKMELFLQS*DNHMWTVVENGNYIPYDEDLNEKKKEDWSEEEGKRM 68
+ P+F GT+Y WK KM L++ ++W++V+ G I +E + + +
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFYIWSIVDVGFAIT---------GTPLTEIDHRNL 60
Query: 69 LLNFKAKLFLTMALSREEYDRVQECKNAKEIWDTLKVHHEGTSHVKETRIDIGVRKFELF 128
LN +A L +LS+EE+DRV + A EIW+ L HEGTS K+ ++ ++E F
Sbjct: 61 QLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETF 120
Query: 129 EMKETETIDEMYGRFTIIMNELRSLEKDFTIHERVRKILRCLPRSWRHIVTAITEAKDLK 188
M E++++MYGR +I+N+L+ L ++T E +K+LR L + +VT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALSEKYETLVTMLINS-DMS 179
Query: 189 KLRLEDLIGSLKAHEVLLQEDK----SSNKSKMIALKTNQESLNQELEMNFDNQQQELDE 244
++ L+G + +++ + K +S K IAL+ E D + +++E
Sbjct: 180 RMTPASLLGKINTNDMYKLKKKEMKEASPSKKCIALQAEVE----------DKSKSKVNE 229
Query: 245 --EDHQDQIILLTRKLQRMIQRRDQNKRNFPA-RKENAKTELDKSQVTCYGCYKLGHYKN 301
ED +++++LL RK ++ RR + R + R+ N + S + C+ C + GH+ +
Sbjct: 230 VNEDLEEEMVLLARKFNDLLGRRKERGRGSNSNRRRNRRPNKTLSNLRCFECGEKGHFAS 289
Query: 302 ECP--------LNKRKSSNLQTNQK---------SFMTTWDEP---------EEQTNEDE 335
+CP +K+KS + +K +F+ WD EEQ ++D
Sbjct: 290 KCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGFEEQCSDDA 349
Query: 336 Q------------------ADLCLMAKSDNEEVNL------DPCS--SCEKTEHLFDNLF 369
A LCLMAK ++ +L D C S ++ +F+ L
Sbjct: 350 SSKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVSYDELVSMFEELH 409
Query: 370 YSSQMLEQECERLRNENLELRKEKEILEKENKDLIKNIQHSESKEVSEN 418
S+ + + L+ ++ L E L+ ++ L I H + KE +N
Sbjct: 410 AYSEKEIVKFKALKKDHASLEVLYEELKTSHERL--TISHEKLKEAHDN 456
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.355 0.157 0.539
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,168,095,805
Number of Sequences: 2540612
Number of extensions: 82400863
Number of successful extensions: 751332
Number of sequences better than 10.0: 5202
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 5372
Number of HSP's that attempted gapping in prelim test: 695872
Number of HSP's gapped (non-prelim): 35481
length of query: 1574
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1432
effective length of database: 502,593,490
effective search space: 719713877680
effective search space used: 719713877680
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 82 (36.2 bits)
Medicago: description of AC144538.13