BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144517.14 - phase: 0 /pseudo
(56 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK45630.1| PE_PGRS family protein [Mycobacterium tuberculosi... 38 0.082
ref|NP_102641.1| hypothetical protein mll0950 [Mesorhizobium lot... 36 0.24
ref|NP_854515.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2... 36 0.31
ref|XP_641579.1| hypothetical protein DDB0218178 [Dictyostelium ... 36 0.31
ref|YP_177799.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 35 0.41
ref|NP_855014.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2... 35 0.41
ref|NP_853950.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2... 35 0.41
ref|YP_177962.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 34 1.2
gb|AAK47791.1| PE_PGRS family protein [Mycobacterium tuberculosi... 34 1.2
gb|AAK44511.1| PE_PGRS family protein [Mycobacterium tuberculosi... 34 1.2
ref|NP_857177.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2... 33 1.5
ref|NP_854426.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2... 33 1.5
ref|ZP_00263675.1| COG3210: Large exoproteins involved in heme u... 33 1.5
ref|YP_177809.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 33 2.0
ref|NP_855083.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2... 33 2.0
ref|YP_177968.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 33 2.6
ref|YP_177739.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 33 2.6
ref|NP_857061.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2... 33 2.6
ref|NP_854253.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2... 33 2.6
gb|AAK47832.1| PE_PGRS family protein [Mycobacterium tuberculosi... 33 2.6
>gb|AAK45630.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
gi|15840779|ref|NP_335816.1| PE_PGRS family protein
[Mycobacterium tuberculosis CDC1551]
Length = 535
Score = 37.7 bits (86), Expect = 0.082
Identities = 23/49 (46%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGR 55
G G G TAG+GG G G+F G G+GG LGI G GNGG+
Sbjct: 417 GAGGAGGFGETAGDGGA--GGNAGLFNGDGGAGGAGGLGIAGDGGNGGK 463
>ref|NP_102641.1| hypothetical protein mll0950 [Mesorhizobium loti MAFF303099]
gi|14021816|dbj|BAB48427.1| mll0950 [Mesorhizobium loti
MAFF303099]
Length = 3659
Score = 36.2 bits (82), Expect = 0.24
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLR---DGIVGIFVGRLGSGG-IVSLGIEGIV-------G 51
G G G+ G +VT N G +R +G VGIF +G GG +V+ G +GIV G
Sbjct: 2866 GGDTGATGK-GGDVTVTNTGQIRLTGNGSVGIFAQSVGGGGGVVTAGTDGIVQAVAGGSG 2924
Query: 52 NGG 54
NGG
Sbjct: 2925 NGG 2927
>ref|NP_854515.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
gi|31617609|emb|CAD93719.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium bovis AF2122/97]
Length = 831
Score = 35.8 bits (81), Expect = 0.31
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 10 GRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G+ G GG+ I+GI +G G G +LG+ G+ GNGG
Sbjct: 727 GTGGNGGAGGGGGLSSPVILGIGIGGAGGNGGDALGLVGVGGNGG 771
>ref|XP_641579.1| hypothetical protein DDB0218178 [Dictyostelium discoideum]
gi|60469647|gb|EAL67636.1| hypothetical protein
DDB0218178 [Dictyostelium discoideum]
Length = 732
Score = 35.8 bits (81), Expect = 0.31
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G + G+ G G G GG + G+ G+ VG + GG+V G+VG+GG
Sbjct: 230 GGIGGVVGGGGLGNVGGLGGGIVGGVGGVAVGGVAVGGMVGANGGGMVGSGG 281
>ref|YP_177799.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|38490254|emb|CAE55377.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium tuberculosis H37Rv]
gi|7476133|pir||A70770 hypothetical glycine-rich protein
Rv1325c - Mycobacterium tuberculosis (strain H37RV)
gi|1722976|sp|Q10637|PG24_MYCTU Hypothetical PE-PGRS
family protein PE_PGRS24 precursor
Length = 603
Score = 35.4 bits (80), Expect = 0.41
Identities = 22/49 (44%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGR 55
G G G TAG+GG G G+ G G+GG LGI G GNGG+
Sbjct: 485 GAGGAGGFGETAGDGGA--GGNAGLLNGDGGAGGAGGLGIAGDGGNGGK 531
>ref|NP_855014.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
gi|31618110|emb|CAD94221.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium bovis AF2122/97]
Length = 603
Score = 35.4 bits (80), Expect = 0.41
Identities = 22/49 (44%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGR 55
G G G TAG+GG G G+ G G+GG LGI G GNGG+
Sbjct: 485 GAGGAGGFGETAGDGGA--GGNAGLLNGDGGAGGAGGLGIAGDGGNGGK 531
>ref|NP_853950.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
gi|31617042|emb|CAD93150.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium bovis AF2122/97]
Length = 877
Score = 35.4 bits (80), Expect = 0.41
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVG-IFVGRLGSGGIVSLGIEGIVGNGG 54
G + G G GS T NGG DG G IF G G+GG +G G G+GG
Sbjct: 522 GWLFGNGGNGGSGATGTNGGDGGDGGAGGIFFGTGGTGGAGGVGTTGTGGDGG 574
Score = 33.9 bits (76), Expect = 1.2
Identities = 19/52 (36%), Positives = 26/52 (49%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G ++G G GS NGG +G G +G G+GG + GI G+GG
Sbjct: 133 GWLIGNGGAGGSGAAGVNGGAGGNGGAGGLIGNGGAGGAGGVASSGIGGSGG 184
Score = 32.0 bits (71), Expect = 4.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
G+ G G+ GNGG+ G G G+GG + G G GNGG F
Sbjct: 648 GLGGDAGTGGAGGNGGLFGAGGTG------GAGGSLGPGAGGAGGNGGLF 691
>ref|YP_177962.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|38490359|emb|CAE55587.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium tuberculosis H37Rv] gi|7476148|pir||H70846
hypothetical glycine-rich protein Rv3345c - Mycobacterium
tuberculosis (strain H37RV)
Length = 1538
Score = 33.9 bits (76), Expect = 1.2
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRL----GSGGIVSLGIEGIVGNGG 54
+G EGR T GNGG DG GI +G G+GG+ G G GNGG
Sbjct: 1114 IGGEGR-----TGGNGGSGGDGGGGISLGGNGGLGGNGGVSETGFGGAGGNGG 1161
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 10 GRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSL-GIEGIVGNGG 54
G G+ T GNGG + VG G+ G+G + L G +GI NGG
Sbjct: 917 GTVGNPGTGGNGGNGGNAGVGGTGGKAGTGSLTGLDGTDGITPNGG 962
>gb|AAK47791.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
gi|15842940|ref|NP_337977.1| PE_PGRS family protein
[Mycobacterium tuberculosis CDC1551]
Length = 1507
Score = 33.9 bits (76), Expect = 1.2
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRL----GSGGIVSLGIEGIVGNGG 54
+G EGR T GNGG DG GI +G G+GG+ G G GNGG
Sbjct: 1077 IGGEGR-----TGGNGGSGGDGGGGISLGGNGGLGGNGGVSETGFGGAGGNGG 1124
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 10 GRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSL-GIEGIVGNGG 54
G G+ T GNGG + VG G+ G+G + L G +GI NGG
Sbjct: 943 GTVGNPGTGGNGGNGGNAGVGGTGGKAGTGSLTGLDGTDGITPNGG 988
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 6/56 (10%)
Query: 3 GKVVGIEGRFGSEVTAGNG--GMLRDGIVGIFVGRLGSGGIVSLGIE--GIVGNGG 54
G + G++G G GNG GM+ G+ G G G GG V + G GNGG
Sbjct: 972 GSLTGLDGTDGITPNGGNGGAGMINGGLGGF--GGAGGGGAVDVAATTGGAGGNGG 1025
>gb|AAK44511.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
gi|15839660|ref|NP_334697.1| PE_PGRS family protein
[Mycobacterium tuberculosis CDC1551]
Length = 905
Score = 33.9 bits (76), Expect = 1.2
Identities = 19/52 (36%), Positives = 26/52 (49%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G ++G G GS NGG +G G +G G+GG + GI G+GG
Sbjct: 87 GWLIGNGGAGGSGAAGVNGGAGGNGGAGGLIGNGGAGGAGGVASSGIGGSGG 138
>ref|NP_857177.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
gi|31620281|emb|CAD95724.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium bovis AF2122/97]
Length = 1460
Score = 33.5 bits (75), Expect = 1.5
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIV-SLGIEGIVGNGGR 55
G G G+ T G GG G G VG G+GG+V +G GI G GG+
Sbjct: 529 GAGGTGGAGGTGGTGGAAGAGGAGGAVGTGGTGGVVGDVGNAGIGGTGGK 578
>ref|NP_854426.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
gi|31617520|emb|CAD93630.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium bovis AF2122/97]
Length = 909
Score = 33.5 bits (75), Expect = 1.5
Identities = 20/49 (40%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI-VSLGIEGIVGNGG 54
G G G+ G+GG G G+ +G GSGG +LG GI G GG
Sbjct: 427 GNGGNGGASTGGGDGGPGGAGGTGVLIGNGGSGGTGATLGKAGIGGTGG 475
>ref|ZP_00263675.1| COG3210: Large exoproteins involved in heme utilization or adhesion
[Pseudomonas fluorescens PfO-1]
Length = 3487
Score = 33.5 bits (75), Expect = 1.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 12 FGSEVTAGNGGMLRDGIVGIFVG---RLGSGGIVSLGIEGIVGNG 53
FGS V NGG+L+ G+ +G LG+ G+ GI G+ NG
Sbjct: 335 FGSGVLTSNGGILQASNAGLTLGNQINLGASGLTLQGINGMTLNG 379
>ref|YP_177809.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|38490267|emb|CAE55387.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium tuberculosis H37Rv]
gi|7476134|pir||A70900 hypothetical glycine-rich protein
Rv1396c - Mycobacterium tuberculosis (strain H37RV)
Length = 576
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI---VSLGIEGIVGNGG 54
G G G G + T GNGG +G + +G G GG G +G GNGG
Sbjct: 495 GGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAGNDGTPGNGG 549
>ref|NP_855083.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
gi|31618179|emb|CAD94292.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium bovis AF2122/97]
Length = 452
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI---VSLGIEGIVGNGG 54
G G G G + T GNGG +G + +G G GG G +G GNGG
Sbjct: 371 GGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAGNDGTPGNGG 425
>ref|YP_177968.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|38490366|emb|CAE55593.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium tuberculosis H37Rv]
gi|7441235|pir||C70974 hypothetical glycine-rich protein
Rv3388 - Mycobacterium tuberculosis (strain H37RV)
Length = 731
Score = 32.7 bits (73), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEG-IVGNGG 54
G G+ G+ G+ + G+GG +G G G G+GG ++G ++GNGG
Sbjct: 664 GAAGGLAGQIGNGGSGGSGGAGGNGGTGDTAGNGGNGGAGAVGGNAQLIGNGG 716
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 5/57 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG-----IEGIVGNGG 54
G G G G+ +AG GG+ G G G +G+GG G G VGNGG
Sbjct: 388 GGAAGAGGNGGNNTSAGTGGVGASGGTGGNAGLIGAGGHGGAGGAGGNQTGGVGNGG 444
>ref|YP_177739.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|38490206|emb|CAE55300.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium tuberculosis H37Rv] gi|7476123|pir||A70934
hypothetical glycine-rich protein Rv0578c - Mycobacterium
tuberculosis (strain H37RV)
Length = 1306
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/52 (36%), Positives = 25/52 (47%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G +G G G+ AGNGG+ G +G G G+GG+ G V GG
Sbjct: 1144 GSTLGATGATGAAGRAGNGGVGGSGGLGSAFGPGGTGGMGGAGGTSTVSAGG 1195
>ref|NP_857061.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
gi|31620165|emb|CAD95608.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium bovis AF2122/97]
Length = 749
Score = 32.7 bits (73), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEG-IVGNGG 54
G G+ G+ G+ + G+GG +G G G G+GG ++G ++GNGG
Sbjct: 656 GAAGGLAGQIGNGGSGGSGGAGGNGGTGDTAGNGGNGGAGAVGGNAQLIGNGG 708
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 5/57 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG-----IEGIVGNGG 54
G G G G+ +AG GG+ G G G +G+GG G G VGNGG
Sbjct: 380 GGAAGAGGNGGNNTSAGTGGVGASGGTGGNAGLIGAGGHGGAGGAGGNQTGGVGNGG 436
>ref|NP_854253.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
gi|31617347|emb|CAD93455.1| PE-PGRS FAMILY PROTEIN
[Mycobacterium bovis AF2122/97]
Length = 1306
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/52 (36%), Positives = 25/52 (47%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G +G G G+ AGNGG+ G +G G G+GG+ G V GG
Sbjct: 1144 GSTLGATGATGAAGRAGNGGVGGSGGLGSAFGPGGTGGMGGAGGTSTVSAGG 1195
>gb|AAK47832.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
gi|15842981|ref|NP_338018.1| PE_PGRS family protein
[Mycobacterium tuberculosis CDC1551]
Length = 775
Score = 32.7 bits (73), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEG-IVGNGG 54
G G+ G+ G+ + G+GG +G G G G+GG ++G ++GNGG
Sbjct: 708 GAAGGLAGQIGNGGSGGSGGAGGNGGTGDTAGNGGNGGAGAVGGNAQLIGNGG 760
Score = 32.0 bits (71), Expect = 4.5
Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 5/57 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG-----IEGIVGNGG 54
G G G G+ +AG GG+ G G G +G+GG G G VGNGG
Sbjct: 432 GGAAGAGGNGGNNTSAGTGGVGASGGTGGNAGLIGAGGHGGAGGAGGNQTGGVGNGG 488
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.152 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,604,046
Number of Sequences: 2540612
Number of extensions: 4425114
Number of successful extensions: 15116
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 14399
Number of HSP's gapped (non-prelim): 742
length of query: 56
length of database: 863,360,394
effective HSP length: 32
effective length of query: 24
effective length of database: 782,060,810
effective search space: 18769459440
effective search space used: 18769459440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC144517.14