Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144515.9 + phase: 0 
         (207 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB5...   188  7e-47
gb|AAT39964.1| putative gag polyprotein [Solanum demissum]            100  3e-20
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]                    100  4e-20
gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum...    99  1e-19
gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum]                     98  1e-19
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]                     97  3e-19
gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum]            63  6e-09
gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabid...    43  0.005
gb|AAL75973.1| putative gypsy-type retrotransposon RIRE2 [Zea mays]    43  0.005
gb|AAL75981.1| putative gag-pol precursor -orf1 [Zea mays]             43  0.006
ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japon...    41  0.019
gb|AAL75984.1| putative prpol [Zea mays]                               41  0.019
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]                        41  0.024
gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabid...    40  0.054
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||...    39  0.071
ref|XP_471249.1| OSJNBa0056L23.9 [Oryza sativa (japonica cultiva...    39  0.071
ref|XP_475727.1| putative polyprotein [Oryza sativa (japonica cu...    39  0.092
gb|AAT75246.1| putative gag-pol precursor [Oryza sativa (japonic...    39  0.092
emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|A...    39  0.12
emb|CAE05585.1| OSJNBa0032N05.13 [Oryza sativa (japonica cultiva...    39  0.12

>pir||T09671 RPE15 protein - alfalfa (fragment) gi|840619|gb|AAB50037.1| RPE15
           gene product
          Length = 219

 Score =  188 bits (478), Expect = 7e-47
 Identities = 92/135 (68%), Positives = 109/135 (80%), Gaps = 7/135 (5%)

Query: 64  AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFE 123
           AAAR++P LDEEE+TQTFLKTLKK++ ERMI++APNNFS+MVTMGTRLEEAVR+GIIV E
Sbjct: 13  AAARVSPRLDEEELTQTFLKTLKKEHKERMIVSAPNNFSDMVTMGTRLEEAVREGIIVLE 72

Query: 124 KAESSVNASKRYGNGHHKKKET-EVGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQHP 182
           K E S +A K+YGNGHHK+KE+ +VGMVS           P+NA Q+P  Y Y+  SQHP
Sbjct: 73  KGECSASAPKKYGNGHHKRKESKKVGMVSGNHD------TPVNATQLPLPYQYMQISQHP 126

Query: 183 FFPPFYHQYPLPPGQ 197
           FFPPFY QYPLPPGQ
Sbjct: 127 FFPPFYQQYPLPPGQ 141


>gb|AAT39964.1| putative gag polyprotein [Solanum demissum]
          Length = 421

 Score =  100 bits (249), Expect = 3e-20
 Identities = 59/194 (30%), Positives = 99/194 (50%), Gaps = 21/194 (10%)

Query: 4   AAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
           A++W+      + HT+D+LA  F   + +N  + P+R  L ++ +K  E+FREYA RWR 
Sbjct: 244 ASKWFIDQDIANWHTWDDLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWRE 303

Query: 64  AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFE 123
            AAR+ P + E EM   FL+  + DY   ++ A    F+E++ +G  +E  ++ G IV +
Sbjct: 304 QAARVKPPMKELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVENGIKSGKIVSQ 363

Query: 124 KAESSVNASKRYGNGH---HKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQ 180
            A  +   +   G+G+    K++E    +VSA                 P +Y    ++Q
Sbjct: 364 AALKATTQALPNGSGNIGGKKRREDVATVVSA-----------------PRTYAQDNHTQ 406

Query: 181 HPFFPPFYHQYPLP 194
           H +FPP   QY +P
Sbjct: 407 H-YFPPQIPQYLVP 419


>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
          Length = 1814

 Score = 99.8 bits (247), Expect = 4e-20
 Identities = 60/189 (31%), Positives = 94/189 (48%), Gaps = 4/189 (2%)

Query: 6   EWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAA 65
           +WY  L +D +  + +L  AF   Y  N  + P+R  L+SL QK  ESF+EYAQRWR  A
Sbjct: 218 DWYMELKRDSIRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELA 277

Query: 66  ARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKA 125
           AR+ P + E E+T  F+ TL+  +++RM      +FS++V  G R E  ++ G I     
Sbjct: 278 ARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFVSFSDVVICGERTESLIKTGKI----Q 333

Query: 126 ESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQHPFFP 185
           ++  ++SK+   G  +++E E   V     Q+ +    + A  +P   P     Q    P
Sbjct: 334 DAGSSSSKKPFAGAPRRREGETNAVQYRRDQNRSQRCQVAAVTIPAPQPRQQQQQRVQQP 393

Query: 186 PFYHQYPLP 194
               Q   P
Sbjct: 394 QQQQQQQRP 402


>gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum demissum]
          Length = 1784

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 19/197 (9%)

Query: 4   AAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
           A+EW+      + HT+D LA  F   + +N  + P+R  L ++ +K  E+FREYA RWR 
Sbjct: 736 ASEWFIDQDIANWHTWDNLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWRE 795

Query: 64  AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFE 123
            AAR+  ++ E EM   FL+  + DY   ++ A    F E++ +G  +E  ++ G IV +
Sbjct: 796 QAARVKLSMKESEMIDVFLQAQEPDYFHYLLSAVGKTFVEVIKVGEMVENGIKSGKIVSQ 855

Query: 124 KAESSVNASKRYGNGH--HKKKETEVGMVSAGA-------GQSMAT----------VAPI 164
            A  +   + + G+G+   KK+  +V  V  GA       G+S A+          ++PI
Sbjct: 856 AALKATTQALQNGSGNIGGKKRREDVATVGNGAKDEFTPIGESYASLFQKLRTLNVLSPI 915

Query: 165 NAAQMPPSYPYVPYSQH 181
                 P    + YSQH
Sbjct: 916 ERKMSNPPPRNLDYSQH 932


>gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum]
          Length = 1105

 Score = 98.2 bits (243), Expect = 1e-19
 Identities = 60/189 (31%), Positives = 92/189 (47%), Gaps = 4/189 (2%)

Query: 6   EWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAA 65
           +WY  L +D +  + +L  AF   Y  N  + P+R  L+SL QK  ESF+EYAQRWR  A
Sbjct: 218 DWYMELKRDSIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELA 277

Query: 66  ARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKA 125
           AR+ P + E E+T  F+ TL+  +++RM      +FS++V  G R E  ++ G I     
Sbjct: 278 ARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----Q 333

Query: 126 ESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYVPYSQHPFFP 185
           +   ++SK+   G  +++E E  +V     Q+        A  +P   P     Q    P
Sbjct: 334 DVGSSSSKKPFAGAPRRREGETNVVQHRRDQNRIEYRQAAAVTIPAPQPRQQQQQRVQQP 393

Query: 186 PFYHQYPLP 194
               Q   P
Sbjct: 394 QQQQQQQRP 402


>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
          Length = 2262

 Score = 97.1 bits (240), Expect = 3e-19
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 4/169 (2%)

Query: 6   EWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAA 65
           +WY  L  D +  + +L  AF   Y  N  + P+R  L+SL QK  ESF+EYAQRWR  A
Sbjct: 217 DWYMELKSDSIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELA 276

Query: 66  ARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKA 125
           AR+ P + E E+T  F+ TL+  +++RM      +FS++V  G R E  ++ G I     
Sbjct: 277 ARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----Q 332

Query: 126 ESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYP 174
           +   ++SK+   G  +++E E   V     Q+        A  +P   P
Sbjct: 333 DVGSSSSKKPFAGAPRRREGETNAVQHRRDQNRIEYRQAAAVTIPAPQP 381


>gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum]
          Length = 1716

 Score = 62.8 bits (151), Expect = 6e-09
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 16/99 (16%)

Query: 38  PNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAA 97
           P+R  L  + QK  ES+RE+A RWR  AAR+ P + E+E+ + F++  K           
Sbjct: 299 PDRYSLEKMKQKSTESYREFAYRWRKEAARVRPPMSEKEIVEVFVRVAK----------- 347

Query: 98  PNNFSEMVTMGTRLEEAVRDGIIVFEKA--ESSVNASKR 134
              F+E+V +G  +E+ +R G IV+  A  ESS+   K+
Sbjct: 348 ---FAEIVKIGETIEDGLRTGKIVYVAASPESSILLKKK 383


>gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
           gi|25354975|pir||C84493 probable Athila retroelement
           ORF1 protein [imported] - Arabidopsis thaliana
          Length = 929

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 56/240 (23%), Positives = 90/240 (37%), Gaps = 60/240 (25%)

Query: 7   WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAA 66
           W  +L K+ + T+D+   AF + +  N+R    R  +   + K+ ESF E  +R++G   
Sbjct: 134 WEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLRNEISGFTLKQNESFCEAWERFKGYQ- 192

Query: 67  RITPALDEEEMTQTFLKTLKKDYVE--RMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEK 124
             T          + L TL +  +   RM++   +N       G  L++ + +G  + E 
Sbjct: 193 --TKCPHHGFSQASLLNTLYRGVLPKIRMLLDTASN-------GNFLKKDIEEGWELVEN 243

Query: 125 -AESSVNASKRYGNG----------HHKK----------------------KETEVGMVS 151
            A+S  N ++ YG            HH++                       E E   V 
Sbjct: 244 LAQSGGNYNEDYGRSIYTSSNTDDKHHREMKALNDKLDKIIQMQQKHVHFISEDEPFQVQ 303

Query: 152 AGAGQSMATVA---------PINAAQMPPSYPYVPYSQHPFFPP------FYHQYPLPPG 196
            G     A +          P  AA   P+ P+VPY+Q   F P       Y Q   PPG
Sbjct: 304 EGENDQCAEIRYVHNQGPSLPSAAAAAEPTKPFVPYNQSLGFVPKQQFQGGYQQQQPPPG 363


>gb|AAL75973.1| putative gypsy-type retrotransposon RIRE2 [Zea mays]
          Length = 1082

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 39/179 (21%), Positives = 71/179 (38%), Gaps = 12/179 (6%)

Query: 2   EDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQR 60
           + A  W   L    +  +D+L  AF  ++   T ++P   + LRS  Q+  ES R+Y +R
Sbjct: 578 DTARAWLEHLPPGQISNWDDLVQAFAGNFQ-GTYVRPGNSWDLRSCRQQPGESLRDYIRR 636

Query: 61  WRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGII 120
           +      +    D + +      T  +D V ++    P   SE++ + T+          
Sbjct: 637 FSKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRASELMDIATKFASGQEAVEA 696

Query: 121 VFEK--------AESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPP 171
           +F K        +E +  AS   G     KK+++    +A A   +   A     + PP
Sbjct: 697 IFRKDKQPQGRPSEEAPEASTPRGAKKKGKKKSQAKRDAADA--DLVAAAEYKNPRKPP 753


>gb|AAL75981.1| putative gag-pol precursor -orf1 [Zea mays]
          Length = 1066

 Score = 42.7 bits (99), Expect = 0.006
 Identities = 44/201 (21%), Positives = 80/201 (38%), Gaps = 13/201 (6%)

Query: 2   EDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQR 60
           + A  W   L    +  +D+L  AF  ++   T ++P   + LRS  Q+  ES R+Y +R
Sbjct: 430 DTARAWLEHLPPGQISNWDDLVQAFAGNFQ-GTYVRPGNSWDLRSCRQQPGESLRDYIRR 488

Query: 61  WRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGII 120
           +      +    D + +      T  +D V ++    P   SE++ + T+          
Sbjct: 489 FSKQRTELPNITDSDVIGAFLAGTTFRDLVSKLGRKTPTRASELMDIATKFASGQEAVEA 548

Query: 121 VFEK--------AESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPS 172
           +F K        +E +  AS   G     KK+++    +A A   +   A     + PP 
Sbjct: 549 IFRKDKQPQGRPSEGAPEASAPRGAKKKGKKKSQSKRDAADA--DLVAAAEYKNPRKPPG 606

Query: 173 YPYVPYSQHPFFPPFYHQYPL 193
              + + +    P  YHQ P+
Sbjct: 607 GANL-FDKMLKEPCPYHQGPV 626


>ref|NP_909551.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
           gi|27764661|gb|AAO23086.1| putative gag-pol precursor
           [Oryza sativa (japonica cultivar-group)]
          Length = 971

 Score = 41.2 bits (95), Expect = 0.019
 Identities = 36/170 (21%), Positives = 68/170 (39%), Gaps = 19/170 (11%)

Query: 4   AAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
           A  WY +L  + ++++++L   F  ++         ++ L  + Q+  ES REY +R+  
Sbjct: 418 ARSWYFNLPANSIYSWEQLRDVFVLNFRGTYEEPKTQQHLLGIRQRPGESIREYMRRFSQ 477

Query: 64  AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFE 123
           A  ++    +   +       L+ +   ++    P     +V         + DG   F 
Sbjct: 478 ARCQVEDITEASVINAASAGLLEGELTRKIANKEPQTLEHLVR--------IIDG---FA 526

Query: 124 KAESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSY 173
           K+E     SKR      +  +TE    S  A Q+ A V P    Q P ++
Sbjct: 527 KSEED---SKR-----RQAIQTEYDKASIAAAQAQAQVKPPRQGQAPMTW 568


>gb|AAL75984.1| putative prpol [Zea mays]
          Length = 1850

 Score = 41.2 bits (95), Expect = 0.019
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 2   EDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQR 60
           + A  W   L    +  +D+L  AF  ++   T ++P   + LRS  Q+  ES R+Y +R
Sbjct: 578 DTARAWLEHLPPGQISNWDDLVQAFAGNFQ-GTYVRPGNSWDLRSCRQQPGESLRDYIRR 636

Query: 61  WRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGII 120
           +      +    D + +      T  +D V ++    P   SE++ + T+          
Sbjct: 637 FSKQRTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTRASELMDIATKFASGQEAVEA 696

Query: 121 VFEK 124
           +F K
Sbjct: 697 IFRK 700


>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
          Length = 1397

 Score = 40.8 bits (94), Expect = 0.024
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 3   DAAEWYT-SLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRW 61
           +A  WY  ++S+ D  ++ +L +     +G N +L+   + L  +  K+  S  EY QR+
Sbjct: 172 EALSWYNWAISRGDFVSWLKLKSGLMLRFG-NLKLRGPSQSLFCI--KQTGSVAEYVQRF 228

Query: 62  RGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIV 121
              ++++   LD++++   FL  L  +  E + +  P N  EMV +   +E +V   ++ 
Sbjct: 229 EDLSSQVG-GLDDQKLEGIFLNGLTGEMQELVHMHKPQNLPEMVAVARSMETSVMRRVVQ 287

Query: 122 FEKAESSVNASKRYG 136
            E     ++  +R G
Sbjct: 288 KELQLVKLDEKRRKG 302


>gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
           gi|25354976|pir||E84475 probable Athila retroelement
           ORF1 protein [imported] - Arabidopsis thaliana
          Length = 750

 Score = 39.7 bits (91), Expect = 0.054
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 7   WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAA 66
           W  +L ++ + T+D+   AF + +  N+R    R  +   +QK+ ESF E  +R++G   
Sbjct: 102 WEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLRNEISGFTQKQNESFCEAWERFKGYQT 161

Query: 67  RIT-PALDEEEMTQTFLKTLKKDYVERMIIAAPNNF-SEMVTMGTRLEE--AVRDGIIVF 122
           +   P   +  +  T  + +       +  A+  NF ++ V  G  L E  A  DG    
Sbjct: 162 KCPHPGFKQASLLSTLYRGVLPKLRMLLDTASNGNFLNKDVEKGWELVENLAQSDG-NYN 220

Query: 123 EKAESSVNASKRYGNGHHKK 142
           E  + S++ S    + HH++
Sbjct: 221 ENYDKSISTSSESDDKHHRE 240


>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
           F5M15.26 [imported] - Arabidopsis thaliana
          Length = 1838

 Score = 39.3 bits (90), Expect = 0.071
 Identities = 25/125 (20%), Positives = 54/125 (43%)

Query: 4   AAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
           A  W++ L  + + +F +L ++F  HY      + +   L S+SQ  +ES R +  R++ 
Sbjct: 267 AHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKL 326

Query: 64  AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFE 123
               IT   +   +           + + + + AP+   + +   +R  E   + +I+  
Sbjct: 327 VVTNITVPDEAAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELEEEKLILAR 386

Query: 124 KAESS 128
           K  S+
Sbjct: 387 KHNST 391


>ref|XP_471249.1| OSJNBa0056L23.9 [Oryza sativa (japonica cultivar-group)]
           gi|38347264|emb|CAE05311.2| OSJNBa0056L23.9 [Oryza
           sativa (japonica cultivar-group)]
          Length = 836

 Score = 39.3 bits (90), Expect = 0.071
 Identities = 49/206 (23%), Positives = 86/206 (40%), Gaps = 24/206 (11%)

Query: 2   EDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQR 60
           + A  W   L +  + ++ EL   F +++   T  +P  +F L ++ QK  ES R+Y +R
Sbjct: 403 DSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQFDLYNVIQKSGESLRDYIRR 461

Query: 61  WRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGII 120
           +     +I+   D+  +   F K ++ + +       P       T+    E+A      
Sbjct: 462 FSEQCNKISDITDDV-IIAAFTKGIRHEELVGKFGRKPPK-----TVKLMFEKANE---- 511

Query: 121 VFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQ--MPPSYPYVPY 178
            + KAE +V ASK+ G+    KK+T     + G G   +  + +N     M    P+ P 
Sbjct: 512 -YAKAEDAVIASKQSGSSWKPKKDTP----ATGGGGRSSKRSRVNTFDKIMNSQCPHHPK 566

Query: 179 SQHP-----FFPPFYHQYPLPPGQNS 199
           S H       +  F  QY     +NS
Sbjct: 567 SNHAAKDCFVYKQFAEQYTKTTRKNS 592


>ref|XP_475727.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
           gi|50080332|gb|AAT69666.1| putative polyprotein [Oryza
           sativa (japonica cultivar-group)]
          Length = 973

 Score = 38.9 bits (89), Expect = 0.092
 Identities = 35/146 (23%), Positives = 64/146 (42%), Gaps = 15/146 (10%)

Query: 2   EDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQR 60
           + A  W   L +D + ++ EL   F +++   T  +P   F L ++ QK  ES R+Y +R
Sbjct: 485 DSAWSWLHGLPRDTIGSWAELRDHFIANFQ-GTFERPGTHFDLYNIVQKSGESLRDYIRR 543

Query: 61  WRGAAARITPALDEEEMTQTFLKTLK-KDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGI 119
           +     +I+   D+  +   F K ++ +D V++     P    +M               
Sbjct: 544 FSEQRNKISDITDDV-IIAAFTKGIRHEDLVDKFGRKPPKTVKQMFEKANE--------- 593

Query: 120 IVFEKAESSVNASKRYGNGHHKKKET 145
             + KAE ++  SK+ G     KK+T
Sbjct: 594 --YAKAEDAITTSKQSGTTWKPKKDT 617


>gb|AAT75246.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
          Length = 1512

 Score = 38.9 bits (89), Expect = 0.092
 Identities = 35/146 (23%), Positives = 64/146 (42%), Gaps = 15/146 (10%)

Query: 2   EDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQR 60
           + A  W   L +  + ++ EL   F +++   T  +P  +F L ++ QK  ES R+Y +R
Sbjct: 430 DSAQSWLNGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQFDLYNVVQKSGESLRDYIRR 488

Query: 61  WRGAAARITPALDEEEMTQTFLKTLK-KDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGI 119
           +     +I+   D+  +   F K ++ +D V +     P    +M               
Sbjct: 489 FSEQRNKISDITDDV-IIAAFTKGIRHEDLVGKFGCKPPRTVKQMFEKANE--------- 538

Query: 120 IVFEKAESSVNASKRYGNGHHKKKET 145
             + KAE ++ ASK+ G     KK+T
Sbjct: 539 --YAKAEDAITASKQSGTTWKPKKDT 562


>emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|AAD48078.1| contains
           similarity to retrotransposons; may be a pseudogene
           [Arabidopsis thaliana] gi|25354718|pir||C85079
           hypothetical protein AT4g08050 [imported] - Arabidopsis
           thaliana
          Length = 1428

 Score = 38.5 bits (88), Expect = 0.12
 Identities = 21/57 (36%), Positives = 30/57 (51%)

Query: 7   WYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 63
           W  +LS D + T+D+   AF S +  N R    R  +   SQK  ESF E  +R++G
Sbjct: 102 WEKNLSHDSITTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTGESFCEAWERFKG 158


>emb|CAE05585.1| OSJNBa0032N05.13 [Oryza sativa (japonica cultivar-group)]
          Length = 371

 Score = 38.5 bits (88), Expect = 0.12
 Identities = 47/168 (27%), Positives = 73/168 (42%), Gaps = 25/168 (14%)

Query: 4   AAEWYTSLSKDDVH----TFDELAAAFK-SHYGFNTRLKPNREFLRSLSQKKEESFREYA 58
           A+EW+  +  +       T+ E   AFK +H          REF R+L QK + +  EY 
Sbjct: 109 ASEWWDHIRMNRAEGQPITWAEFTEAFKKTHIPAGVVALKKREF-RALKQK-DHTVAEYL 166

Query: 59  QRWRGAAARITP--ALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAV- 115
             +    AR  P     +EE  + FL+ LK +    +I     +F E+V    RLE+   
Sbjct: 167 HEFN-RLARYAPEDVRTDEERQEKFLEGLKDELSVMLISHDYEDFQELVDKAIRLEDKKN 225

Query: 116 -----RDGIIVFEKAESSVNASKRYGNGHHKKKETEVG-MVSAGAGQS 157
                + G IVF++A+ S        +   + K  ++G   S G GQS
Sbjct: 226 RMDNRKRGRIVFQEAQDS--------SQRQRIKPLQIGESFSTGQGQS 265


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.317    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 356,806,899
Number of Sequences: 2540612
Number of extensions: 13720011
Number of successful extensions: 55406
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 55299
Number of HSP's gapped (non-prelim): 243
length of query: 207
length of database: 863,360,394
effective HSP length: 122
effective length of query: 85
effective length of database: 553,405,730
effective search space: 47039487050
effective search space used: 47039487050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)


Medicago: description of AC144515.9