BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144481.12 - phase: 0 /pseudo
(72 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN52800.1| MADS-box protein AGL62 [Arabidopsis thaliana] 103 1e-21
dbj|BAB08227.1| MADS-box protein-like [Arabidopsis thaliana] gi|... 103 1e-21
gb|AAN52794.1| MADS-box protein AGL23 [Arabidopsis thaliana] gi|... 91 8e-18
gb|AAN52795.1| MADS-box protein AGL28 [Arabidopsis thaliana] gi|... 90 1e-17
emb|CAA73304.1| MADS-box protein [Arabidopsis thaliana] 90 1e-17
gb|AAY78694.1| MADS-box family protein [Arabidopsis thaliana] gi... 90 2e-17
gb|AAD23028.1| putative MADS-box protein [Arabidopsis thaliana] ... 90 2e-17
gb|AAN52798.1| MADS-box protein AGL40 [Arabidopsis thaliana] gi|... 87 1e-16
gb|AAO43327.1| putative MADS-box transcription factor [Arabidops... 74 1e-12
gb|AAO43325.1| putative MADS-box transcription factor [Arabidops... 74 1e-12
gb|AAO43323.1| putative MADS-box transcription factor [Arabidops... 74 1e-12
gb|AAO43321.1| putative MADS-box transcription factor [Arabidops... 74 1e-12
gb|AAO43320.1| putative MADS-box transcription factor [Arabidops... 74 1e-12
gb|AAO43326.1| putative MADS-box transcription factor [Arabidops... 73 2e-12
dbj|BAD45640.1| MADS-box protein-like [Oryza sativa (japonica cu... 73 2e-12
ref|XP_450050.1| MADS-box protein-like [Oryza sativa (japonica c... 72 4e-12
gb|AAO43324.1| putative MADS-box transcription factor [Arabidops... 71 8e-12
gb|AAO42470.1| putative MADS-box transcription factor [Arabidops... 71 8e-12
gb|AAM14943.1| MADS-box protein (AGL29) [Arabidopsis thaliana] g... 71 8e-12
ref|NP_914385.1| P0459B04.16 [Oryza sativa (japonica cultivar-gr... 69 2e-11
>gb|AAN52800.1| MADS-box protein AGL62 [Arabidopsis thaliana]
Length = 279
Score = 103 bits (257), Expect = 1e-21
Identities = 47/62 (75%), Positives = 56/62 (89%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
M NESNLQVTFSK +GLFKKASELCTLCGA +A++VFSP KVFSFGHPNVD+VIDR++
Sbjct: 16 MKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFI 75
Query: 61 SS 62
++
Sbjct: 76 NN 77
>dbj|BAB08227.1| MADS-box protein-like [Arabidopsis thaliana]
gi|15239333|ref|NP_200852.1| MADS-box protein (AGL62)
[Arabidopsis thaliana]
Length = 299
Score = 103 bits (257), Expect = 1e-21
Identities = 47/62 (75%), Positives = 56/62 (89%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
M NESNLQVTFSK +GLFKKASELCTLCGA +A++VFSP KVFSFGHPNVD+VIDR++
Sbjct: 16 MKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFI 75
Query: 61 SS 62
++
Sbjct: 76 NN 77
>gb|AAN52794.1| MADS-box protein AGL23 [Arabidopsis thaliana]
gi|15218647|ref|NP_176715.1| MADS-box protein (AGL23)
[Arabidopsis thaliana] gi|3335343|gb|AAC27145.1|
Contains similarity to gb|L46397 MADS box protein
(ZAG3) from Zea mays. [Arabidopsis thaliana]
gi|7487795|pir||T02359 hypothetical protein T8F5.14 -
Arabidopsis thaliana
Length = 226
Score = 90.9 bits (224), Expect = 8e-18
Identities = 43/59 (72%), Positives = 49/59 (82%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
M+ ESNLQVTFSK GLFKKASE CTLC A IA+IVFSP+ KVFSFGHPNVD ++D +
Sbjct: 16 MTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 74
>gb|AAN52795.1| MADS-box protein AGL28 [Arabidopsis thaliana]
gi|15223420|ref|NP_171660.1| MADS-box protein (AGL28)
[Arabidopsis thaliana] gi|25513716|pir||H86145 F22L4.7
protein - Arabidopsis thaliana
gi|8920589|gb|AAF81311.1| Contains strong similarity
(practically identical) to a MADS-box protein from
Arabidopsis thaliana gi|2505875 and contains a SRF-type
transcription factor (DNA-binding and dimerisation)
PF|00319 domain
Length = 247
Score = 90.1 bits (222), Expect = 1e-17
Identities = 43/60 (71%), Positives = 50/60 (82%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
M+NESNLQVTFSK +GLFKK SELCTLC A IA+IVFSPS K +SFGHPNV+ ++D L
Sbjct: 16 MTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSL 75
>emb|CAA73304.1| MADS-box protein [Arabidopsis thaliana]
Length = 244
Score = 90.1 bits (222), Expect = 1e-17
Identities = 43/60 (71%), Positives = 50/60 (82%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
M+NESNLQVTFSK +GLFKK SELCTLC A IA+IVFSPS K +SFGHPNV+ ++D L
Sbjct: 16 MTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSL 75
>gb|AAY78694.1| MADS-box family protein [Arabidopsis thaliana]
gi|30682571|ref|NP_850058.1| MADS-box family protein
[Arabidopsis thaliana]
Length = 264
Score = 89.7 bits (221), Expect = 2e-17
Identities = 42/61 (68%), Positives = 52/61 (84%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ ES+ QVTFSK GLFKKASELCTLCGA I +IVFSP++K FSFGHP+V++V+DRY+
Sbjct: 72 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYV 131
Query: 61 S 61
S
Sbjct: 132 S 132
>gb|AAD23028.1| putative MADS-box protein [Arabidopsis thaliana]
gi|25412255|pir||B84641 probable MADS-box protein
[imported] - Arabidopsis thaliana
Length = 210
Score = 89.7 bits (221), Expect = 2e-17
Identities = 42/61 (68%), Positives = 52/61 (84%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ ES+ QVTFSK GLFKKASELCTLCGA I +IVFSP++K FSFGHP+V++V+DRY+
Sbjct: 18 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYV 77
Query: 61 S 61
S
Sbjct: 78 S 78
>gb|AAN52798.1| MADS-box protein AGL40 [Arabidopsis thaliana]
gi|4006904|emb|CAB16834.1| putative MADS-box protein
[Arabidopsis thaliana] gi|7270607|emb|CAB80325.1|
putative MADS-box protein [Arabidopsis thaliana]
gi|21592306|gb|AAM64257.1| putative MADS-box protein
[Arabidopsis thaliana] gi|15234456|ref|NP_195377.1|
MADS-box protein (AGL40) [Arabidopsis thaliana]
gi|25407742|pir||A85432 probable MADS-box protein
[imported] - Arabidopsis thaliana
Length = 248
Score = 86.7 bits (213), Expect = 1e-16
Identities = 44/59 (74%), Positives = 47/59 (79%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
M NESNLQVTFSK GLFKKASELCTL GA I LIVFSP KVFSFGHP+V +I R+
Sbjct: 16 MENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPSVQELIHRF 74
>gb|AAO43327.1| putative MADS-box transcription factor [Arabidopsis thaliana]
Length = 168
Score = 73.6 bits (179), Expect = 1e-12
Identities = 33/43 (76%), Positives = 38/43 (87%)
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
GLFKKASELCTLC A IA+IVFSP+ KVFSFGHPNVD ++D +
Sbjct: 1 GLFKKASELCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 43
>gb|AAO43325.1| putative MADS-box transcription factor [Arabidopsis thaliana]
Length = 168
Score = 73.6 bits (179), Expect = 1e-12
Identities = 33/43 (76%), Positives = 38/43 (87%)
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
GLFKKASELCTLC A IA+IVFSP+ KVFSFGHPNVD ++D +
Sbjct: 1 GLFKKASELCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 43
>gb|AAO43323.1| putative MADS-box transcription factor [Arabidopsis thaliana]
Length = 168
Score = 73.6 bits (179), Expect = 1e-12
Identities = 33/43 (76%), Positives = 38/43 (87%)
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
GLFKKASELCTLC A IA+IVFSP+ KVFSFGHPNVD ++D +
Sbjct: 1 GLFKKASELCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 43
>gb|AAO43321.1| putative MADS-box transcription factor [Arabidopsis thaliana]
Length = 168
Score = 73.6 bits (179), Expect = 1e-12
Identities = 33/43 (76%), Positives = 38/43 (87%)
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
GLFKKASELCTLC A IA+IVFSP+ KVFSFGHPNVD ++D +
Sbjct: 1 GLFKKASELCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 43
>gb|AAO43320.1| putative MADS-box transcription factor [Arabidopsis thaliana]
Length = 168
Score = 73.6 bits (179), Expect = 1e-12
Identities = 33/43 (76%), Positives = 38/43 (87%)
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
GLFKKASELCTLC A IA+IVFSP+ KVFSFGHPNVD ++D +
Sbjct: 1 GLFKKASELCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHF 43
>gb|AAO43326.1| putative MADS-box transcription factor [Arabidopsis thaliana]
Length = 168
Score = 72.8 bits (177), Expect = 2e-12
Identities = 32/43 (74%), Positives = 38/43 (87%)
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
GLFKKASELCTLC A +A+IVFSP+ KVFSFGHPNVD ++D +
Sbjct: 1 GLFKKASELCTLCDAKLAMIVFSPAGKVFSFGHPNVDVLLDHF 43
>dbj|BAD45640.1| MADS-box protein-like [Oryza sativa (japonica cultivar-group)]
Length = 210
Score = 72.8 bits (177), Expect = 2e-12
Identities = 34/59 (57%), Positives = 42/59 (70%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N QVTFSK NGLFKKASEL TLCGA +A++ FS + VF+FG P VD V+ R+
Sbjct: 20 IDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAFGQPTVDAVVRRF 78
>ref|XP_450050.1| MADS-box protein-like [Oryza sativa (japonica cultivar-group)]
gi|46806648|dbj|BAD17728.1| MADS-box protein-like
[Oryza sativa (japonica cultivar-group)]
gi|46806462|dbj|BAD17598.1| MADS-box protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 210
Score = 72.0 bits (175), Expect = 4e-12
Identities = 34/63 (53%), Positives = 46/63 (72%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ +E QV FSK G FKKASEL LC A +A +VFSP+ K +SFGHP+V+ ++DR+L
Sbjct: 25 IESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSFGHPSVEFLLDRFL 84
Query: 61 SST 63
SS+
Sbjct: 85 SSS 87
>gb|AAO43324.1| putative MADS-box transcription factor [Arabidopsis thaliana]
Length = 168
Score = 70.9 bits (172), Expect = 8e-12
Identities = 32/43 (74%), Positives = 37/43 (85%)
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
GLFKKASELCTLC A IA+IVFSP+ KVFSF HPNVD ++D +
Sbjct: 1 GLFKKASELCTLCDAKIAMIVFSPAGKVFSFDHPNVDVLLDHF 43
>gb|AAO42470.1| putative MADS-box transcription factor [Arabidopsis lyrata]
Length = 166
Score = 70.9 bits (172), Expect = 8e-12
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 17 GLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
GLFKK+SELCTLC A IA+IVFSPS KV+SFGHPNV+ ++D++
Sbjct: 1 GLFKKSSELCTLCDAEIAIIVFSPSGKVYSFGHPNVNVLLDQF 43
>gb|AAM14943.1| MADS-box protein (AGL29) [Arabidopsis thaliana]
gi|3128222|gb|AAC26702.1| MADS-box protein (AGL29)
[Arabidopsis thaliana] gi|15226309|ref|NP_180991.1|
MADS-box family protein [Arabidopsis thaliana]
gi|7487950|pir||T02331 MADS box protein (AGL29)
[imported] - Arabidopsis thaliana
Length = 172
Score = 70.9 bits (172), Expect = 8e-12
Identities = 32/53 (60%), Positives = 41/53 (76%)
Query: 8 QVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
QVTFSK GLFKKASEL TLC A + ++VFSP K FS+G PN+D+V +R++
Sbjct: 18 QVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAERFM 70
>ref|NP_914385.1| P0459B04.16 [Oryza sativa (japonica cultivar-group)]
gi|15290141|dbj|BAB63832.1| MADS-box protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 208
Score = 69.3 bits (168), Expect = 2e-11
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ +E QV FSK G FKKASEL LC A +A +VFSP+ K +SFGHP+V+ +++R+L
Sbjct: 25 IESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSFGHPSVECLLERFL 84
Query: 61 SSTTS 65
++S
Sbjct: 85 PDSSS 89
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,933,484
Number of Sequences: 2540612
Number of extensions: 3355258
Number of successful extensions: 8595
Number of sequences better than 10.0: 1664
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6937
Number of HSP's gapped (non-prelim): 1668
length of query: 72
length of database: 863,360,394
effective HSP length: 48
effective length of query: 24
effective length of database: 741,411,018
effective search space: 17793864432
effective search space used: 17793864432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144481.12