BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144477.8 + phase: 0 /pseudo
(879 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 284 8e-75
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 281 5e-74
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 268 6e-70
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 267 1e-69
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 267 1e-69
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 263 1e-68
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 263 1e-68
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 261 5e-68
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 261 7e-68
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 261 7e-68
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 261 7e-68
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 261 9e-68
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 255 4e-66
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 254 1e-65
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 252 3e-65
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 252 4e-65
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 251 6e-65
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 250 2e-64
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 250 2e-64
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 249 2e-64
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 284 bits (727), Expect = 8e-75
Identities = 135/297 (45%), Positives = 191/297 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV R I N + A E+ HY+ + KGK G A+KLD+SK YD ++W +LR +M ++ F
Sbjct: 887 AFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGF 946
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
DQWV +M CV +V Y + +NG+ QI P RGLRQGDPLSPYLFIIC EGLSAL++K
Sbjct: 947 HDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKA 1006
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+A G+I G+K+C + P I+HL FADD + R + A ++R +L+ YE A GQ +N K
Sbjct: 1007 QADGKIEGIKVCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDK 1066
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S + S N L + + S L + +YLGLP IG+S++ F +IK ++W +I
Sbjct: 1067 SSVLFSPNTLQSDRMEVRSALCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQG 1126
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
W K LSKAG+E+L+K V Q+IPTY MS F LCDEI +++ +WW + +++
Sbjct: 1127 WQEKLLSKAGKEILVKAVAQAIPTYAMSCFDLTKGLCDEINSMISKWWWSQNDKENK 1183
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 281 bits (720), Expect = 5e-74
Identities = 134/291 (46%), Positives = 184/291 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E+ HYM++K G+ G A KLD+SK YD ++WS+L +M K+ F
Sbjct: 740 AFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGF 799
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
WV IM CV TV Y + VNG++ P RGLRQGDPLSPYLF++C EG SAL+ K
Sbjct: 800 HTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKT 859
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E G ++G++IC AP +SHLLFADD + R N +A +++ IL YE GQ +N K
Sbjct: 860 EEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDK 919
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S + S N + + + L +Q KYLGLP +GRS+ FS++K+RIW++I
Sbjct: 920 SAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQG 979
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGH 349
W K LS+AG+E+LIK V Q IPT+ M F LCD+I +++ +WW +
Sbjct: 980 WKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSN 1030
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 268 bits (685), Expect = 6e-70
Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E+ H +++ K A+K D+SK YD ++W+++ ++ KM F
Sbjct: 323 AFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGF 382
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM C+ TV Y VL+NG IIP RGLRQGDPLSPYLFI+C E L A +RK
Sbjct: 383 CEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKA 442
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E + I G+K+ +P +SHLLFADD F + N +Q + IL YE GQ +N K
Sbjct: 443 ERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSK 502
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V ++ +I ILG+ + G G YLGLP +G SK FSF++DR+ +IN
Sbjct: 503 SSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRING 562
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS+K LSK G+EV+IK V ++P Y MS F P ++ ++ + FWW S G SRG+
Sbjct: 563 WSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWS-SNGDSRGM 620
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 267 bits (683), Expect = 1e-69
Identities = 140/331 (42%), Positives = 196/331 (58%), Gaps = 6/331 (1%)
Query: 38 CQSFSKLVEISIG*MHLR*SIAFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDI 97
CQ K++ I H AFV GR I DN + A E+ H +++ K A+K D+
Sbjct: 372 CQRLKKILPSLISETHS----AFVEGRLISDNILIAQEMFHGLRTNPSCKGKFMAIKTDM 427
Query: 98 SKTYDMIDWSYLRGVMTKMRFSDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGD 157
SK YD ++W+++ ++ KM F ++W+ WIM C+ TV Y VL+NG I+P RGLRQGD
Sbjct: 428 SKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGD 487
Query: 158 PLSPYLFIICVEGLSALVRKDEARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQAS 217
PLSPYLFI+C E L A +RK E I G+K+ +P +SHLLFA+D F + N +Q
Sbjct: 488 PLSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCKANKEQCG 547
Query: 218 KMRAILSTYERAYGQAVNLQKSEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMI 277
+ IL YE GQ +N KS I V + I S LG+ + G G YLGLP +
Sbjct: 548 VILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGSYLGLPESL 607
Query: 278 GRSKKSTFSFIKDRIWKKINLWSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDE 337
G SK FSF++DR+ +IN WS+K LSK G+EV+IK V+ +PTY MS F P ++ +
Sbjct: 608 GGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSK 667
Query: 338 IERIMNSFWWGHSGGQSRGLTGFLGINCLCT 368
+ + FWW S G+SRG+ ++ N LC+
Sbjct: 668 LTSAVAKFWWS-SDGESRGM-HWMAWNKLCS 696
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 267 bits (683), Expect = 1e-69
Identities = 133/298 (44%), Positives = 185/298 (61%)
Query: 58 IAFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMR 117
IAFV R I DN + A E+ H++K+K +G G A+K +SK YD ++W +L +M K+
Sbjct: 995 IAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVEWGFLEKMMLKLG 1054
Query: 118 FSDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRK 177
F WV +M CV +V Y + VNG+ QI P GLRQGDP+SPYLF IC EG S L+
Sbjct: 1055 FDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFICAEGFSTLLNA 1114
Query: 178 DEARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQ 237
E RG+++ +K+C NAP I+HLLFADD L +T+ A+ ++ +LS YER G+ +N +
Sbjct: 1115 AEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSLYERCSGETINKE 1174
Query: 238 KSEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKIN 297
KS I SRN+ L + V KYLGLP +GRSK T S++K+R+WKKI
Sbjct: 1175 KSSIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTSSYLKERVWKKIQ 1234
Query: 298 LWSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
W K LS+AG++VLIK V Q+IP + MS F LCDEI ++ F+W +++
Sbjct: 1235 GWKEKLLSRAGKDVLIKAVAQAIPAFAMSCFNLTKGLCDEITSLICRFFWAQQERENK 1292
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 263 bits (673), Expect = 1e-68
Identities = 132/314 (42%), Positives = 186/314 (59%), Gaps = 3/314 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E H+++ + A KLD+SK YD +DW +L M K+ F
Sbjct: 1153 AFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGF 1212
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ WVKWIM C+ V Y V +NG +++ P RGLRQGDPLSP+LF+ +GLS L+ +
Sbjct: 1213 AHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEK 1272
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+G +N + IC +AP + HLLFADD LFF+ DQA M+ +L TY GQ +N K
Sbjct: 1273 VDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSK 1332
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
I ++ T V N I L + KYLG P+ GR K F +++R+WK+I L
Sbjct: 1333 CSIMFGQSSPTAVQNQIKQTLQISNSF-EDKYLGFPTPEGRMTKGKFQSLQERLWKRIML 1391
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGLT 358
W K LS G+E+LIK VLQ++P Y M LF P S+C+E+ +++ +FWWG G R T
Sbjct: 1392 WGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRR--T 1449
Query: 359 GFLGINCLCTRMME 372
+ +CL + ++
Sbjct: 1450 HWKSWDCLIAQKLK 1463
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 263 bits (673), Expect = 1e-68
Identities = 132/314 (42%), Positives = 186/314 (59%), Gaps = 3/314 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E H+++ + A KLD+SK YD +DW +L M K+ F
Sbjct: 1110 AFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGF 1169
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ WVKWIM C+ V Y V +NG +++ P RGLRQGDPLSP+LF+ +GLS L+ +
Sbjct: 1170 AHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEK 1229
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+G +N + IC +AP + HLLFADD LFF+ DQA M+ +L TY GQ +N K
Sbjct: 1230 VDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSK 1289
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
I ++ T V N I L + KYLG P+ GR K F +++R+WK+I L
Sbjct: 1290 CSIMFGQSSPTAVQNQIKQTLQISNSF-EDKYLGFPTPEGRMTKGKFQSLQERLWKRIML 1348
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGLT 358
W K LS G+E+LIK VLQ++P Y M LF P S+C+E+ +++ +FWWG G R T
Sbjct: 1349 WGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRR--T 1406
Query: 359 GFLGINCLCTRMME 372
+ +CL + ++
Sbjct: 1407 HWKSWDCLIAQKLK 1420
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 261 bits (668), Expect = 5e-68
Identities = 126/289 (43%), Positives = 180/289 (61%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR+I DN + EI+H+++ K A+K D+SK YD I W++L+ V+ ++ F
Sbjct: 480 AFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGF 539
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
D+W++W+M CV TV+Y L+NG ++P RGLRQGDPLSPYLFI+C E LS L RK
Sbjct: 540 HDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKA 599
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ +G + G+++ +P ++HLLFADD F +TN + IL YE A GQ++NL K
Sbjct: 600 QEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAK 659
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I S + + L + G GKYLGLP GR K+ FS I DRI ++ +
Sbjct: 660 SAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHS 719
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
WS + LS AG+++L+K VL S+P+Y M F P SLC +I+ ++ FWW
Sbjct: 720 WSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWW 768
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 261 bits (667), Expect = 7e-68
Identities = 127/302 (42%), Positives = 187/302 (61%), Gaps = 3/302 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV G++I DN + A E++H +KS+ + + G A+K DISK YD ++W++L VM ++ F
Sbjct: 901 AFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGF 960
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ +WVKWIM CV +V+Y VL+NG +I P RG+RQGDPLSPYLF+ C E LS ++RK
Sbjct: 961 APRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKA 1020
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E +I+G+KI + ISHLLFADD F R + ++ I YE A GQ +N K
Sbjct: 1021 EVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAK 1080
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I + + T + +LG+ V G GKYLGLP +GR K F +I ++ ++
Sbjct: 1081 SSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEG 1140
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGLT 358
W+ LS AG+E++IK + ++P Y M+ F P +C+EI ++ +FWWG ++ G
Sbjct: 1141 WAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWGK---ENEGDL 1197
Query: 359 GF 360
GF
Sbjct: 1198 GF 1199
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 261 bits (667), Expect = 7e-68
Identities = 125/289 (43%), Positives = 184/289 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR + DN M A E++H +K++ + + A+K D+SK YD ++W++L M F
Sbjct: 901 AFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGF 960
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S+ W+KWIM V++VNY VLVNG I P RG+RQGDPLSPYLFI+C + L+ L++
Sbjct: 961 SETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNR 1020
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
A G+I G++I N P ++HL FADD F ++NV ++ + YE GQ +N+ K
Sbjct: 1021 VAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSK 1080
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V T N + +ILG+Q G GKYLGLP GR K+ F++I +R+ K+ +
Sbjct: 1081 SMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSS 1140
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
WS+K LS AG+E+++K V S+P Y MS F P+++ EIE ++ +FWW
Sbjct: 1141 WSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWW 1189
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 261 bits (667), Expect = 7e-68
Identities = 125/289 (43%), Positives = 184/289 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR + DN M A E++H +K++ + + A+K D+SK YD ++W++L M F
Sbjct: 921 AFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGF 980
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S+ W+KWIM V++VNY VLVNG I P RG+RQGDPLSPYLFI+C + L+ L++
Sbjct: 981 SETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNR 1040
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
A G+I G++I N P ++HL FADD F ++NV ++ + YE GQ +N+ K
Sbjct: 1041 VAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSK 1100
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V T N + +ILG+Q G GKYLGLP GR K+ F++I +R+ K+ +
Sbjct: 1101 SMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSS 1160
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
WS+K LS AG+E+++K V S+P Y MS F P+++ EIE ++ +FWW
Sbjct: 1161 WSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWW 1209
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 261 bits (666), Expect = 9e-68
Identities = 123/297 (41%), Positives = 184/297 (61%), Gaps = 1/297 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I D+ + A E +H ++ K K FALK+D+ K YD ++W+YL G ++K+ F
Sbjct: 555 AFVPGRLITDSALVAYECLHTIR-KQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGF 613
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S W+ +M CV +V Y V +NG++ ++P RG+RQGDP+SPYLF++C EGLS L+ K
Sbjct: 614 SQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKK 673
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E GE+ G+K + P ISHLLFADD F + + ++ L +Y A GQ +NL K
Sbjct: 674 EVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHK 733
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S IF + V ++ S L V + YLG+P+ IG + + F F+ +RIWK++N
Sbjct: 734 SSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNG 793
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
W+ + LS+AG E ++K V Q+IP Y MS F PVS+C++++ + WWG G+ +
Sbjct: 794 WTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKK 850
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 255 bits (652), Expect = 4e-66
Identities = 130/297 (43%), Positives = 177/297 (58%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV R+ DN + E +HY+KS K+ A+K ++SK YD I+W +++ VM +M F
Sbjct: 365 AFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGF 424
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
W+ WI+ C+ TV+Y L+NG + P RGLRQGDPLSP+LFIIC E LS L RK
Sbjct: 425 HQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKA 484
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G + G+++ P ++HLLFADD F R+++ IL YE A GQ +N K
Sbjct: 485 QLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSK 544
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I SR + ILG+Q+V G GKYLGLP M GR K+ F+ I DRI ++
Sbjct: 545 SAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLS 604
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
WSS+ LS AG+ ++K VL S+PTY MS F VSLC I+ + FWW S + +
Sbjct: 605 WSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADKKK 661
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 254 bits (648), Expect = 1e-65
Identities = 124/297 (41%), Positives = 181/297 (60%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E H + + + ALKLD+SK YD +DW +L G + K+ F
Sbjct: 527 AFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGF 586
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ W KWIM CV +V Y V +NG+++ P RGLR+GDPL+PYLF+ +GLS ++++
Sbjct: 587 GNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRR 646
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+I +K+C +AP +SHLLFADD LFF+ V QA++++ L YER GQ +N ++
Sbjct: 647 RDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKE 706
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
+ S + I ++L V+ K LGLP+ GR K F IK+R K++
Sbjct: 707 CSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTD 766
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
WS + LS AG+E LIK V Q++PTY M +F P C+E E+++ +FWWGH G+ +
Sbjct: 767 WSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKK 823
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 252 bits (644), Expect = 3e-65
Identities = 128/299 (42%), Positives = 182/299 (60%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E++H + S K + A+K DISK YD ++W +L M + F
Sbjct: 539 AFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGF 598
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+D W++ IM CV++V Y VL+NG +IIP RGLRQGDPLSPYLF+IC E L +++
Sbjct: 599 ADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSA 658
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E + +I G+K+ AP ISHLLFADD + + N + ++ I+ Y A GQ VN K
Sbjct: 659 EQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLK 718
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I+ +++ + LG++ G G YLGLP SK +T S++KDR+ KK+
Sbjct: 719 SSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLG 778
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
W S LS G+E+L+K V ++PTY MS F P ++C +IE +M FWW + + RGL
Sbjct: 779 WQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNK-KEGRGL 836
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 252 bits (643), Expect = 4e-65
Identities = 121/285 (42%), Positives = 181/285 (63%), Gaps = 1/285 (0%)
Query: 66 ILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRFSDQWVKW 125
I DN + A E+IH + +K K + A KLDI+K +D I+W ++ +M +M FS++W W
Sbjct: 2 ITDNILIAHELIHSLHTK-KLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60
Query: 126 IMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKDEARGEIN 185
IM C+ T Y +L+NG + +IIP RG+RQGDP+SPYL+++C EGLSAL++ +++
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLH 120
Query: 186 GVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQKSEIFCSR 245
G K N P ISHLLFA D +F + +++ + +L YE+A GQAVN QKS I +
Sbjct: 121 GFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGK 180
Query: 246 NVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINLWSSKSLS 305
+ ++ +LG+ G G+YLGLP +GR+K + FSFI + +K++ W +K LS
Sbjct: 181 GLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLS 240
Query: 306 KAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHS 350
AG+EVLIK ++ +IPTY MS F P+ L +I M FWW ++
Sbjct: 241 PAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNT 285
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 251 bits (642), Expect = 6e-65
Identities = 127/299 (42%), Positives = 179/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A EI+H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 160 AFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 219
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
D+W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L++
Sbjct: 220 CDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVK 279
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G+I GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 280 ASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 339
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + ++L + G GKYLGLP GR KK F++I DR+ ++
Sbjct: 340 SLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTAS 399
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS+K LS AG+E+L+K V ++P Y MS F P + EIE ++ +FWW RG+
Sbjct: 400 WSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWW-EKASNKRGI 457
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 250 bits (638), Expect = 2e-64
Identities = 125/299 (41%), Positives = 180/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A E++H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 921 AFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 980
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L+
Sbjct: 981 CNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGR 1040
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G++ GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 1041 ASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 1100
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + + IL + G GKYLGLP GR KK F +I DR+ K+ +
Sbjct: 1101 SMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTST 1160
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS++ LS AG+E+++K V ++P Y MS F P + EIE ++ +FWW + Q RG+
Sbjct: 1161 WSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGI 1218
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 250 bits (638), Expect = 2e-64
Identities = 125/299 (41%), Positives = 180/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A E++H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 695 AFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 754
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L+
Sbjct: 755 CNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGR 814
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G++ GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 815 ASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 874
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + + IL + G GKYLGLP GR KK F +I DR+ K+ +
Sbjct: 875 SMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTST 934
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS++ LS AG+E+++K V ++P Y MS F P + EIE ++ +FWW + Q RG+
Sbjct: 935 WSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGI 992
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 249 bits (637), Expect = 2e-64
Identities = 118/289 (40%), Positives = 182/289 (62%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + E++H++++ K A+K D+SK YD ++W +L+ V+ + F
Sbjct: 434 AFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGF 493
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
W+ W++ CV +V+Y L+NG +++P RGLRQGDPLSP LFI+C E LS L +
Sbjct: 494 HSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRA 553
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ ++ GV++ N P ++HLLFADD F +++ + +K+ ILS Y +A GQ++N K
Sbjct: 554 QRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHK 613
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S + S +V + IL ++ GTGKYLGLP GR K+ F I D+I +K +
Sbjct: 614 SSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHS 673
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
W+S+ LS+AG++V++K VL S+P Y MS F P +LC +I+ ++ FWW
Sbjct: 674 WASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWW 722
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.354 0.159 0.546
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,227,058,540
Number of Sequences: 2540612
Number of extensions: 44480112
Number of successful extensions: 194900
Number of sequences better than 10.0: 826
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 193453
Number of HSP's gapped (non-prelim): 1071
length of query: 879
length of database: 863,360,394
effective HSP length: 137
effective length of query: 742
effective length of database: 515,296,550
effective search space: 382350040100
effective search space used: 382350040100
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 80 (35.4 bits)
Medicago: description of AC144477.8