BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144459.10 + phase: 0
(167 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM76973.1| reduced vernalization response 1 [Arabidopsis tha... 92 5e-18
gb|AAR92199.1| reduced vernalization response 1 [Brassica rapa] 89 5e-17
gb|AAQ55453.1| reduced vernalization response 1 [Brassica rapa] 88 1e-16
gb|AAQ89626.1| At4g01580 [Arabidopsis thaliana] gi|7268201|emb|C... 78 1e-13
ref|NP_683415.1| transcriptional factor B3 family protein [Arabi... 77 2e-13
gb|AAP40368.1| unknown protein [Arabidopsis thaliana] gi|2982432... 74 2e-12
dbj|BAB01692.1| unnamed protein product [Arabidopsis thaliana] 74 2e-12
gb|AAX96729.1| B3 DNA binding domain, putative [Oryza sativa (ja... 65 5e-10
emb|CAE02098.2| OSJNBa0020I02.5 [Oryza sativa (japonica cultivar... 60 3e-08
ref|NP_916714.1| P0022F10.13 [Oryza sativa (japonica cultivar-gr... 57 1e-07
dbj|BAB08937.1| unnamed protein product [Arabidopsis thaliana] g... 51 1e-05
ref|XP_463206.1| putative auxin response factor [Oryza sativa (j... 51 1e-05
ref|XP_481619.1| hypothetical protein [Oryza sativa (japonica cu... 50 2e-05
gb|AAD43154.1| Hypothetical Protein [Arabidopsis thaliana] gi|25... 50 3e-05
dbj|BAB08399.1| unnamed protein product [Arabidopsis thaliana] g... 49 7e-05
ref|XP_463207.1| putative auxin response factor [Oryza sativa (j... 48 1e-04
dbj|BAD37802.1| hypothetical protein [Oryza sativa (japonica cul... 47 2e-04
gb|AAN72043.1| Unknown protein [Arabidopsis thaliana] 47 2e-04
gb|AAF30315.1| hypothetical protein [Arabidopsis thaliana] gi|15... 46 3e-04
gb|AAV85708.1| At2g35310 [Arabidopsis thaliana] gi|59958290|gb|A... 46 3e-04
>gb|AAM76973.1| reduced vernalization response 1 [Arabidopsis thaliana]
gi|21734794|gb|AAM76972.1| reduced vernalization
response 1 [Arabidopsis thaliana]
gi|30685150|ref|NP_188529.2| transcriptional factor B3
family protein [Arabidopsis thaliana]
Length = 341
Score = 92.0 bits (227), Expect = 5e-18
Identities = 40/84 (47%), Positives = 60/84 (70%)
Query: 10 RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFI 69
R+PD+F+++F +EL+ +TVPDG VW++ L+K ++F + WQEFV+ YSI G +
Sbjct: 21 RVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLL 80
Query: 70 SFKYEGNSKFSVIIFDATSVEISY 93
F+YEGNS FSV IF+ + EI+Y
Sbjct: 81 IFRYEGNSAFSVYIFNLSHSEINY 104
>gb|AAR92199.1| reduced vernalization response 1 [Brassica rapa]
Length = 329
Score = 89.0 bits (219), Expect = 5e-17
Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 10 RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGEN--VFFCNKWQEFVEYYSIGYGC 67
R+PD+F++RF +EL+ +TVPDG VW++ L+K N ++F + WQEFV+ YSI G
Sbjct: 21 RVPDKFVSRFKDELSVAVALTVPDGHVWRVGLRKADNNNKIWFQDGWQEFVDRYSIRIGY 80
Query: 68 FISFKYEGNSKFSVIIFDATSVEISY 93
+ F+YEGNS FSV I++ EI+Y
Sbjct: 81 LLIFRYEGNSAFSVCIYNLPQSEINY 106
>gb|AAQ55453.1| reduced vernalization response 1 [Brassica rapa]
Length = 329
Score = 87.8 bits (216), Expect = 1e-16
Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 10 RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGEN--VFFCNKWQEFVEYYSIGYGC 67
R+PD+F+++F +EL+ +TVPDG VW++ L+K N ++F + WQEFV+ YSI G
Sbjct: 21 RVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNNNKIWFQDGWQEFVDRYSIRIGY 80
Query: 68 FISFKYEGNSKFSVIIFDATSVEISY 93
+ F+YEGNS FSV I++ EI+Y
Sbjct: 81 LLIFRYEGNSAFSVCIYNLPQSEINY 106
>gb|AAQ89626.1| At4g01580 [Arabidopsis thaliana] gi|7268201|emb|CAB77728.1|
hypothetical protein [Arabidopsis thaliana]
gi|15234250|ref|NP_192068.1| transcriptional factor B3
family protein [Arabidopsis thaliana]
gi|3859591|gb|AAC72857.1| T15B16.18 gene product
[Arabidopsis thaliana] gi|51968808|dbj|BAD43096.1|
hypothetical protein [Arabidopsis thaliana]
gi|7487022|pir||T02015 hypothetical protein T15B16.18 -
Arabidopsis thaliana
Length = 190
Score = 77.8 bits (190), Expect = 1e-13
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 8 MQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGC 67
M RIP F+ G++L+ V T+ P G ++LK+ GE ++F W EF E +SI G
Sbjct: 43 MMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGH 102
Query: 68 FISFKYEGNSKFSVIIFDATSVEISYPFE 96
F+ F+Y+ NS F VIIF+A++ E +YP +
Sbjct: 103 FLLFEYKKNSSFRVIIFNASACETNYPLD 131
>ref|NP_683415.1| transcriptional factor B3 family protein [Arabidopsis thaliana]
Length = 250
Score = 76.6 bits (187), Expect = 2e-13
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 8 MQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGC 67
M ++P F+ RFG +L + T+ P G + +K+ G+ V+F W EF E +S+ G
Sbjct: 47 MMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGH 105
Query: 68 FISFKYEGNSKFSVIIFDATSVEISYPFETPSTNGEPK--------TNYPSSRKRSKVET 119
F+ F YEG+S F V+IFD ++ EI YP + N E T + SS +V
Sbjct: 106 FLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREEVMDDDEQGFTGFESSDDDGEVVD 165
Query: 120 CERLRKKVK 128
+ L KK K
Sbjct: 166 MDELLKKKK 174
>gb|AAP40368.1| unknown protein [Arabidopsis thaliana] gi|29824327|gb|AAP04124.1|
unknown protein [Arabidopsis thaliana]
gi|30685143|ref|NP_188526.2| transcriptional factor B3
family protein [Arabidopsis thaliana]
Length = 209
Score = 73.9 bits (180), Expect = 2e-12
Identities = 35/89 (39%), Positives = 54/89 (60%)
Query: 8 MQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGC 67
M +IP F+ G++L+ V T+ P G ++LK+ GE ++F W EF E +SI G
Sbjct: 43 MMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGH 102
Query: 68 FISFKYEGNSKFSVIIFDATSVEISYPFE 96
F+ F+Y+ NS F VIIF+ ++ E YP +
Sbjct: 103 FLLFEYKENSSFRVIIFNVSACETKYPLD 131
>dbj|BAB01692.1| unnamed protein product [Arabidopsis thaliana]
Length = 193
Score = 73.9 bits (180), Expect = 2e-12
Identities = 35/89 (39%), Positives = 54/89 (60%)
Query: 8 MQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGC 67
M +IP F+ G++L+ V T+ P G ++LK+ GE ++F W EF E +SI G
Sbjct: 43 MMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGH 102
Query: 68 FISFKYEGNSKFSVIIFDATSVEISYPFE 96
F+ F+Y+ NS F VIIF+ ++ E YP +
Sbjct: 103 FLLFEYKENSSFRVIIFNVSACETKYPLD 131
>gb|AAX96729.1| B3 DNA binding domain, putative [Oryza sativa (japonica
cultivar-group)]
Length = 363
Score = 65.5 bits (158), Expect = 5e-10
Identities = 40/134 (29%), Positives = 60/134 (43%), Gaps = 1/134 (0%)
Query: 8 MQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGC 67
MQ+IP F N+ + ++ G W EL E FF + W+EFV SI G
Sbjct: 1 MQKIPSSFNQCLQNQPTGMVSLVDRSGNKWSAELTSDSEGFFFVHGWKEFVRDNSIQCGQ 60
Query: 68 FISFKYEGNSKFSVIIFDATSVEISYPFET-PSTNGEPKTNYPSSRKRSKVETCERLRKK 126
F+ F Y+ S+FSV +F+ + ++ F PS N KT + T E++
Sbjct: 61 FLVFTYDKRSQFSVTVFEPSGIDKISTFSAHPSKNVIIKTESDEGGMVTAAITTEKMAPA 120
Query: 127 VKNMSKYASKRVED 140
+K + KR D
Sbjct: 121 LKENNGITGKRTRD 134
>emb|CAE02098.2| OSJNBa0020I02.5 [Oryza sativa (japonica cultivar-group)]
gi|50923289|ref|XP_472005.1| OSJNBa0020I02.5 [Oryza
sativa (japonica cultivar-group)]
Length = 427
Score = 59.7 bits (143), Expect = 3e-08
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 10 RIPDEFITRF--GNELN-NVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYG 66
RIPD+F+ + G LN N+A I P G+ W++EL K VF W +F+ ++ I G
Sbjct: 156 RIPDKFVRDYITGENLNSNMAIILSPLGKSWRVELDKDQSGVFLGGGWLQFLSFHGISRG 215
Query: 67 CFISFKYEGNSKFSVIIF 84
+ F+YEGN F + +F
Sbjct: 216 DVVIFRYEGNLVFKISVF 233
Score = 34.3 bits (77), Expect = 1.3
Identities = 23/90 (25%), Positives = 38/90 (41%), Gaps = 9/90 (10%)
Query: 6 FLMQRIPDEFITRFGNELNN-------VATITVPDGRVWKMELKKRGENVFFCNK-WQEF 57
F RI DE + G + A + P G+ W + + + G+ F + W EF
Sbjct: 30 FRKMRICDELAAQLGVGVGGGGAPRAATARVASPLGKAWDVGVVRDGDGRAFLGRGWAEF 89
Query: 58 VEYYSIGYGCFISFKYEGNSKFSVIIFDAT 87
+ +G G F+ ++ G +V FD T
Sbjct: 90 AAAHGLGVGWFVVLRH-GGGVLAVEAFDTT 118
>ref|NP_916714.1| P0022F10.13 [Oryza sativa (japonica cultivar-group)]
gi|20160548|dbj|BAB89497.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 402
Score = 57.4 bits (137), Expect = 1e-07
Identities = 23/69 (33%), Positives = 43/69 (61%)
Query: 22 ELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFISFKYEGNSKFSV 81
E + AT+ P GR W + +++ E FF + W +FV+ ++ F+ F+Y+GN++F+
Sbjct: 56 EASMAATLEGPSGRTWLVVIRRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDGNTRFTA 115
Query: 82 IIFDATSVE 90
++FD T+ E
Sbjct: 116 MVFDRTACE 124
>dbj|BAB08937.1| unnamed protein product [Arabidopsis thaliana]
gi|15240157|ref|NP_201499.1| transcriptional factor B3
family protein [Arabidopsis thaliana]
Length = 334
Score = 51.2 bits (121), Expect = 1e-05
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 11 IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGEN----VFFCNKWQEFVEYYSIGYG 66
IP FI L A + GR+W +E K VFF WQ F S+ +G
Sbjct: 25 IPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEERFCVFFTKGWQSFANDQSLEFG 84
Query: 67 CFISFKYEGNSKFSVIIF 84
F+ F Y+G+S+FSV IF
Sbjct: 85 DFLVFSYDGDSRFSVTIF 102
>ref|XP_463206.1| putative auxin response factor [Oryza sativa (japonica
cultivar-group)] gi|28201561|gb|AAO34499.1| putative
auxin response factor [Oryza sativa (japonica
cultivar-group)]
Length = 306
Score = 50.8 bits (120), Expect = 1e-05
Identities = 23/89 (25%), Positives = 44/89 (48%)
Query: 2 VCYHFLMQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYY 61
+ Y + IP+EF+ FG ++ + G + +++ K V + W +V +
Sbjct: 37 IMYMASHKTIPNEFLHNFGGKIPKSIKLETRSGLTFDVQVTKNSGRVVLQSGWASYVSAH 96
Query: 62 SIGYGCFISFKYEGNSKFSVIIFDATSVE 90
+ G F+ FKY G+S+ +IFD++ E
Sbjct: 97 DLKIGDFLVFKYSGDSQLKTLIFDSSGCE 125
>ref|XP_481619.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|38636994|dbj|BAD03253.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|38637418|dbj|BAD03676.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 391
Score = 50.4 bits (119), Expect = 2e-05
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 11 IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
IP EF+ R ++ + + + + + K E V F W +FV+ + + G +
Sbjct: 49 IPKEFVQRLKGDIPEEIQLETHNRNSYTVRVDKSQEKVIFAAGWAQFVKTFDLHMGDSMM 108
Query: 71 FKYEGNSKFSVIIFDATSVE 90
F+++GNS+F VIIFD E
Sbjct: 109 FRFKGNSQFDVIIFDQVGRE 128
>gb|AAD43154.1| Hypothetical Protein [Arabidopsis thaliana] gi|25365928|pir||D96531
hypothetical protein F13F21.9 [imported] - Arabidopsis
thaliana
Length = 210
Score = 49.7 bits (117), Expect = 3e-05
Identities = 38/141 (26%), Positives = 60/141 (41%), Gaps = 29/141 (20%)
Query: 8 MQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGC 67
M ++P F+ RFG +L + T+ P G + +K+ G+ V+F W++
Sbjct: 44 MMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWRD----------- 91
Query: 68 FISFKYEGNSKFSVIIFDATSVEISYPFETPSTNGEPK--------TNYPSSRKRSKVET 119
S F V+IFD ++ EI YP + N E T + SS +V
Sbjct: 92 ---------SCFRVVIFDVSASEIEYPLDDTDDNREEVMDDDEQGFTGFESSDDDGEVVD 142
Query: 120 CERLRKKVKNMSKYASKRVED 140
+ L KK K + K V+D
Sbjct: 143 MDELLKKKKKKPRVNIKLVDD 163
>dbj|BAB08399.1| unnamed protein product [Arabidopsis thaliana]
gi|15238713|ref|NP_197301.1| transcriptional factor B3
family protein [Arabidopsis thaliana]
Length = 307
Score = 48.5 bits (114), Expect = 7e-05
Identities = 30/121 (24%), Positives = 62/121 (50%), Gaps = 8/121 (6%)
Query: 7 LMQRIPDEFITRFGNELNNVATIT-VPDGRVWKMELKKRGENVFFCNK-WQEFVEYYSIG 64
+M+ IP I ++ ++ + VP GR W++++ K + ++ W +FV +G
Sbjct: 33 MMRMIPHHLIRSISDKSSSFKMVLRVPWGRSWQVKISKNPNFHYMEDRGWNQFVNDNGLG 92
Query: 65 YGCFISFKYEGNSKFSVIIFDATSVEISYPFETPSTNG------EPKTNYPSSRKRSKVE 118
+++F +E N F+V IF+A E+ P +T +++ E K+ Y +K ++E
Sbjct: 93 ENEYLTFTHEANMCFNVTIFEADGTEMLRPRKTITSSSGRNKREERKSIYKDVKKEEEIE 152
Query: 119 T 119
+
Sbjct: 153 S 153
>ref|XP_463207.1| putative auxin response factor [Oryza sativa (japonica
cultivar-group)] gi|28201564|gb|AAO34502.1| putative
auxin response factor [Oryza sativa (japonica
cultivar-group)]
Length = 750
Score = 47.8 bits (112), Expect = 1e-04
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 3 CYHFLMQRI---------PDEFITRFGNELNNVATITVPDGRVWKMEL--KKRGENVFFC 51
C HFL + P F F ++ V + P G+ W + + GE V
Sbjct: 29 CKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVAYSDTGELVLRS 88
Query: 52 NKWQEFVEYYSIGYGCFISFKYEGNSKFSVIIFDATSVEISYP 94
W+EFV+ + + F+Y G S F V+IFD + E + P
Sbjct: 89 G-WKEFVDANGVQENDCLLFRYSGVSSFDVLIFDPSGCEKASP 130
Score = 41.6 bits (96), Expect = 0.008
Identities = 23/86 (26%), Positives = 37/86 (42%), Gaps = 2/86 (2%)
Query: 11 IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNK-WQEFVEYYSIGYGCFI 69
+P F F ++ + P G W + + W+EFV+ I G +
Sbjct: 424 VPARFANNFNGHISEEVNLRSPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCL 483
Query: 70 SFKYEG-NSKFSVIIFDATSVEISYP 94
F+Y G +S F V+IFD + E + P
Sbjct: 484 LFRYSGVSSSFDVLIFDPSGCEKASP 509
>dbj|BAD37802.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 393
Score = 47.4 bits (111), Expect = 2e-04
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 10 RIPDEFITRFGNEL----NNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGY 65
+IP++F+ + E + A I P G+ W++EL++ +V + W F+ + +
Sbjct: 157 KIPEKFVQQHLTETYTNNHQNAIIVCPLGKFWRVELQREQPDVLLRDGWAPFLAAHDLSE 216
Query: 66 GCFISFKYEGNSKFSVIIF 84
G + F+YEGN F+V +F
Sbjct: 217 GNILLFRYEGNMVFTVEVF 235
>gb|AAN72043.1| Unknown protein [Arabidopsis thaliana]
Length = 288
Score = 47.0 bits (110), Expect = 2e-04
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 8 MQRIPDEFITRFGN-ELNNVATITVPDGRVWKMELKKRGENVFFCNK--WQEFVEYYSIG 64
M+ +P +F+ F N EL+ I G W++E+ K +F K W++FV ++G
Sbjct: 33 MRALPYDFVRSFSNNELSRKMKIKARWGSSWEVEICKN-PRFYFMEKSGWEKFVSDNALG 91
Query: 65 YGCFISFKYEGNSKFSVIIFDATSVEISYPFETPS 99
F++F ++GN +F+V IF E+ P ++ S
Sbjct: 92 ASEFLTFTHKGNMRFTVNIFMQDGKEVLQPPQSMS 126
>gb|AAF30315.1| hypothetical protein [Arabidopsis thaliana]
gi|15230669|ref|NP_187273.1| transcriptional factor B3
family protein [Arabidopsis thaliana]
Length = 175
Score = 46.2 bits (108), Expect = 3e-04
Identities = 21/77 (27%), Positives = 37/77 (47%)
Query: 8 MQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGC 67
++ IP + L A +T GRVWK+ + + E V+ W+ FV + G
Sbjct: 23 LKLIPRSYYEHLPRRLPKTAILTGTGGRVWKVAMMSKREQVYLARGWENFVADNELKDGE 82
Query: 68 FISFKYEGNSKFSVIIF 84
F++F ++G + V I+
Sbjct: 83 FLTFVFDGYKSYEVSIY 99
>gb|AAV85708.1| At2g35310 [Arabidopsis thaliana] gi|59958290|gb|AAX12855.1|
At2g35310 [Arabidopsis thaliana]
gi|30686380|ref|NP_181074.2| transcriptional factor B3
family protein [Arabidopsis thaliana]
Length = 288
Score = 46.2 bits (108), Expect = 3e-04
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 8 MQRIPDEFITRFGN-ELNNVATITVPDGRVWKMELKKRGENVFFCNK--WQEFVEYYSIG 64
M+ +P +F+ F N EL+ I G W++E+ K +F K W++FV ++G
Sbjct: 33 MRALPYDFVRSFSNNELSRKMKIKARWGSSWEVEICKN-PRFYFMEKSGWEKFVSDNALG 91
Query: 65 YGCFISFKYEGNSKFSVIIFDATSVEISYPFETPS 99
F++F ++GN +F+V IF E+ P ++ S
Sbjct: 92 ASEFLTFTHKGNMRFTVNIFMQDGKEMLQPPQSMS 126
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 295,809,386
Number of Sequences: 2540612
Number of extensions: 11815371
Number of successful extensions: 35309
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 35216
Number of HSP's gapped (non-prelim): 118
length of query: 167
length of database: 863,360,394
effective HSP length: 118
effective length of query: 49
effective length of database: 563,568,178
effective search space: 27614840722
effective search space used: 27614840722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 70 (31.6 bits)
Medicago: description of AC144459.10